CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR723668	Rhizobium sp. Khangiran2 chromosome 1	0 crisprs	csa3,DEDDh,WYL,cas3	0	0	5	0
NZ_LR723669	Rhizobium sp. Khangiran2 plasmid 2	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1181090 : 1194303

Sinorhizobium_phage(20.0%)

integrase,tail,transposase

attL 1179669:1179683|attR 1198817:1198831

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1179669:1179683	attL	NA	NA	NA	NA
WP_152341905.1\|1181090_1182026_-\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	5.9e-53	40.0
WP_152339821.1\|1182522_1183050_-	hypothetical protein	A0A068C9C1	Rhizobium_phage	2.7e-23	42.2
WP_152339822.1\|1183046_1183250_-	hypothetical protein	NA	NA	NA	NA
WP_152339823.1\|1183355_1184524_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.9e-38	37.1
WP_152339824.1\|1184602_1186375_+\|tail	phage tail tape measure protein	A0A088FV68	Escherichia_phage	3.6e-35	36.5
WP_152339825.1\|1186374_1186809_+\|tail	phage tail protein	A0A0A8IL04	Aurantimonas_phage	5.3e-33	49.7
WP_152339826.1\|1186812_1187040_+\|tail	tail protein X	NA	NA	NA	NA
WP_152339827.1\|1187042_1188224_+	late control D family protein	A0A0A8ILC1	Aurantimonas_phage	1.9e-88	52.0
WP_152339828.1\|1188332_1190267_+	acyltransferase family protein	A0A1R3Y5Q6	Salmonella_virus	2.6e-63	36.1
WP_152339829.1\|1190481_1191495_+	peptidoglycan-binding protein	A0A076G6J8	Sinorhizobium_phage	1.2e-86	55.6
WP_152339830.1\|1191496_1192024_+	hypothetical protein	A0A223W0D2	Agrobacterium_phage	1.4e-56	66.3
WP_152339831.1\|1192020_1192479_+	hypothetical protein	NA	NA	NA	NA
WP_152339832.1\|1192478_1192832_+	hypothetical protein	NA	NA	NA	NA
WP_152339834.1\|1193256_1194303_+	ATP-dependent DNA ligase	A0A068CDF3	Rhizobium_phage	6.5e-117	61.7
1198817:1198831	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1641948 : 1651707

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152340149.1\|1641948_1644870_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.2
WP_152340150.1\|1645122_1645668_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.4e-46	76.3
WP_152340151.1\|1645709_1646342_-	NAAT family transporter	NA	NA	NA	NA
WP_152340152.1\|1646566_1649383_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.4e-96	33.2
WP_052638394.1\|1649657_1649837_-	hypothetical protein	NA	NA	NA	NA
WP_142587617.1\|1650062_1650557_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.2e-24	35.3
WP_152340153.1\|1650577_1651144_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.2e-46	54.9
WP_152340154.1\|1651191_1651707_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.7e-46	60.0

DBSCAN-SWA_3

1855039 : 1863918

uncultured_Mediterranean_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172973696.1\|1855039_1856539_-	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	3.6e-12	31.7
WP_152340297.1\|1856719_1857373_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	NA	NA	NA
WP_152340298.1\|1857369_1858146_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.6e-27	31.7
WP_152340299.1\|1858145_1859429_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.3e-95	45.8
WP_152340300.1\|1859483_1860308_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.5e-44	40.7
WP_152340301.1\|1860304_1860976_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_152340302.1\|1861008_1861215_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	3.1e-07	55.2
WP_152340303.1\|1861245_1862355_-	ATP-binding cassette domain-containing protein	Q6GZ03	Mycoplasma_phage	6.6e-11	28.2
WP_152340304.1\|1862405_1863122_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.2e-39	45.0
WP_152341932.1\|1863111_1863918_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	9.6e-36	35.2

DBSCAN-SWA_4

2327639 : 2337637

Escherichia_virus(33.33%)

protease,tail,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152340618.1\|2327639_2328176_-\|tail	phage tail tape measure protein	C0LP53	Escherichia_virus	1.0e-09	38.8
WP_172973611.1\|2328389_2328548_+	hypothetical protein	NA	NA	NA	NA
WP_152341956.1\|2328658_2328871_+	hypothetical protein	NA	NA	NA	NA
WP_152340619.1\|2329222_2329888_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_152340620.1\|2329868_2330216_+	DUF861 domain-containing protein	NA	NA	NA	NA
WP_152340621.1\|2330307_2330595_-	hypothetical protein	NA	NA	NA	NA
WP_152340622.1\|2330808_2331042_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_152340623.1\|2331038_2331389_-	gene transfer agent family protein	NA	NA	NA	NA
WP_077547759.1\|2331388_2331796_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_152340624.1\|2331834_2332254_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_152340625.1\|2332250_2332583_-\|head	phage head closure protein	NA	NA	NA	NA
WP_172973612.1\|2334649_2335267_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.3e-29	47.3
WP_152340626.1\|2335314_2335632_-	hypothetical protein	NA	NA	NA	NA
WP_172973613.1\|2335821_2336145_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_152340627.1\|2336128_2336392_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_152340628.1\|2336461_2337637_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.3e-62	37.6

DBSCAN-SWA_5

2709337 : 2800244

Leptospira_phage(23.53%)

integrase,transposase

attL 2714795:2714813|attR 2805692:2805710

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152339823.1\|2709337_2710506_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.9e-38	37.1
WP_172973630.1\|2710557_2710836_-	hypothetical protein	NA	NA	NA	NA
WP_152341980.1\|2711366_2713061_+	PAS domain S-box protein	A0A2H4J162	uncultured_Caudovirales_phage	3.5e-11	33.9
WP_152340906.1\|2713629_2714820_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.8e-14	30.4
2714795:2714813	attL	NA	NA	NA	NA
WP_152339823.1\|2715874_2717042_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.9e-38	37.1
WP_152340907.1\|2717916_2718171_+	hypothetical protein	A0A076G717	Sinorhizobium_phage	9.1e-09	47.5
WP_152340908.1\|2718689_2718926_+	hypothetical protein	NA	NA	NA	NA
WP_152340909.1\|2720046_2721474_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.5e-52	29.5
WP_152340910.1\|2721620_2722928_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_152340911.1\|2722979_2725628_-	cadherin-like domain-containing protein	NA	NA	NA	NA
WP_152340912.1\|2725642_2727382_-	type I secretion system permease/ATPase	A0A1M7XV31	Cedratvirus	5.3e-07	22.2
WP_172973631.1\|2727451_2734630_-	heme peroxidase	NA	NA	NA	NA
WP_172973632.1\|2735218_2736340_+	hypothetical protein	NA	NA	NA	NA
WP_152340915.1\|2736326_2736986_+	response regulator	NA	NA	NA	NA
WP_152340916.1\|2737375_2738683_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_152340911.1\|2738734_2741383_-	cadherin-like domain-containing protein	NA	NA	NA	NA
WP_152340912.1\|2741397_2743137_-	type I secretion system permease/ATPase	A0A1M7XV31	Cedratvirus	5.3e-07	22.2
WP_152340917.1\|2743206_2753127_-	hypothetical protein	NA	NA	NA	NA
WP_152340918.1\|2753369_2754761_+	hypothetical protein	NA	NA	NA	NA
WP_152340919.1\|2754794_2755463_-	response regulator	NA	NA	NA	NA
WP_152340920.1\|2755660_2756677_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.9e-44	33.6
WP_152340921.1\|2756689_2758546_-	hypothetical protein	NA	NA	NA	NA
WP_172973633.1\|2758555_2760787_-	phosphotransferase	NA	NA	NA	NA
WP_172973634.1\|2760932_2761757_-	glycoside hydrolase family 16 protein	M1I0P8	Acanthocystis_turfacea_Chlorella_virus	6.8e-21	29.0
WP_152340924.1\|2761776_2762889_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_172973635.1\|2763059_2764040_+	hypothetical protein	NA	NA	NA	NA
WP_152340926.1\|2764062_2764371_-	hypothetical protein	NA	NA	NA	NA
WP_172973636.1\|2764516_2766085_-	sel1 repeat family protein	NA	NA	NA	NA
WP_152340928.1\|2766074_2767976_-	SEL1-like repeat protein	NA	NA	NA	NA
WP_152340929.1\|2767987_2768806_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_152340930.1\|2768798_2771006_-	glycosyltransferase	NA	NA	NA	NA
WP_152340931.1\|2771014_2771836_-	glycosyltransferase	A0A0N9P7Z4	Sulfolobales_Virus_YNP2	4.6e-17	32.4
WP_152340932.1\|2773870_2774428_-	HNH endonuclease	A0A2P0PAN1	Pectobacterium_phage	1.3e-20	43.1
WP_152340933.1\|2774790_2774898_-\|transposase	transposase	NA	NA	NA	NA
WP_172973637.1\|2774974_2775415_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	S5WIU1	Leptospira_phage	1.6e-13	38.0
WP_152340935.1\|2775731_2776190_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	2.9e-21	48.1
WP_152339823.1\|2776269_2777437_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.9e-38	37.1
WP_152340936.1\|2777464_2778052_-	hypothetical protein	NA	NA	NA	NA
WP_172973638.1\|2779173_2779338_+	hypothetical protein	NA	NA	NA	NA
WP_152341981.1\|2780096_2782382_+	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	2.2e-45	38.1
WP_152340937.1\|2782378_2783746_+	2-keto-D-gluconate dehydrogenase	NA	NA	NA	NA
WP_152340938.1\|2784856_2786569_-	AAA family ATPase	NA	NA	NA	NA
WP_172973639.1\|2786568_2791296_-	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_152340940.1\|2792503_2797630_-	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	1.2e-54	38.3
WP_152340941.1\|2798141_2800244_+\|integrase	integrase	NA	NA	NA	NA
2805692:2805710	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage