CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR699010	Lachnoanaerobaculum umeaense isolate MGYG-HGUT-02522 chromosome 1	10 crisprs	cas3HD,csx1,WYL,cas6,cas3,DEDDh,cas2,cas1,csm3gr7,csx19,cas10,csx20,csa3,csm5gr7,csm4gr5,csm2gr11,csm6	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR699010_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_1

335505-335648

Orphan

Consensus_repeat	Method
CCATCCGGTCTGCATCTTACCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LR699010_1

>merge|NZ_LR699010|1|335505-335648|CRISPRCasFinder
CCAACCAGTTTGCATAGCACCTGAGTCGGTCATAAAATATTTGCTGTTTCCATCATTGATCCAACCGGTTTGCATTTTACCGGTATTGTCCATATAGTACAATAGACCACGGTCATTTACCCAACCGGTCAACATCTTACCGTT

>NZ_LR699010|1|1|335505-335648|CRISPRCasFinder
CCAACCAGTTTGCATAGCACCTG	AGTCGGTCATAAAATATTTGCTGTTTCCATCATTGAT
CCAACCGGTTTGCATTTTACCGG	TATTGTCCATATAGTACAATAGACCACGGTCATTTAC
CCAACCGGTCAACATCTTACCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111523859.1\|334237_334993_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111523856.1\|330796_331936_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111523863.1\|338826_339240_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111523865.1\|340314_340830_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|349951
NZ_LR699010.1\|WP_111523857.1\|332068_333421_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|367119
NZ_LR699010.1\|WP_111523861.1\|336986_338183_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_LR699010.1\|WP_111523864.1\|339236_339965_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_LR699010.1\|WP_111523866.1\|340817_341351_+\|ATP-synthase-F1-subunit-delta	unknown	unknown	gnl\|CDD\|365949
NZ_LR699010.1\|WP_111523858.1\|333420_334026_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|132928
NZ_LR699010.1\|WP_111523854.1\|328531_329497_+\|prenyltransferase	unknown	unknown	gnl\|CDD\|139690
NZ_LR699010.1\|WP_111523867.1\|341396_342896_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_LR699010.1\|WP_111523851.1\|326496_327072_+\|CDP-archaeol-synthase	unknown	unknown	gnl\|CDD\|235207
NZ_LR699010.1\|WP_111523862.1\|338540_338834_+\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_LR699010.1\|WP_007594440.1\|340044_340302_+\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|184068
NZ_LR699010.1\|WP_111523853.1\|327678_328554_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|179097
NZ_LR699010.1\|WP_111523850.1\|326134_326500_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260132
NZ_LR699010.1\|WP_111523868.1\|342908_343775_+\|ATP-synthase-F1-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_LR699010.1\|WP_111523869.1\|343814_345206_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_LR699010.1\|WP_111523852.1\|327073_327670_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224104
NZ_LR699010.1\|WP_111523855.1\|329511_330609_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111523866.1\|340817_341351_+\|ATP-synthase-F1-subunit-delta	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	3.02459e-38
NZ_LR699010.1\|WP_111523865.1\|340314_340830_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|349951	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b. Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.	5.05423e-29
NZ_LR699010.1\|WP_111523857.1\|332068_333421_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|367119	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.	2.17551e-28
NZ_LR699010.1\|WP_111523861.1\|336986_338183_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.32832e-28
NZ_LR699010.1\|WP_111523864.1\|339236_339965_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.26796e-47
NZ_LR699010.1\|WP_111523858.1\|333420_334026_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|132928	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	5.19105e-48
NZ_LR699010.1\|WP_111523854.1\|328531_329497_+\|prenyltransferase	gnl\|CDD\|139690	PRK13592, ubiA, prenyltransferase; Provisional.	1.32595e-102
NZ_LR699010.1\|WP_111523867.1\|341396_342896_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_LR699010.1\|WP_111523851.1\|326496_327072_+\|CDP-archaeol-synthase	gnl\|CDD\|235207	PRK04032, PRK04032, CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase.	1.49102e-13
NZ_LR699010.1\|WP_007594440.1\|340044_340302_+\|ATP-synthase-F0-subunit-C	gnl\|CDD\|184068	PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional.	1.05737e-25
NZ_LR699010.1\|WP_111523862.1\|338540_338834_+\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	1.37009e-13
NZ_LR699010.1\|WP_111523850.1\|326134_326500_+\|diacylglycerol-kinase	gnl\|CDD\|260132	cd14263, DAGK_IM_like, Integral membrane diacylglycerol kinase and similar enzymes. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of substrates such as diacylglycerol to phosphatidic acid or of undecaprenol to undecaprenyl phosphate. They are not related other cytosolic or membrane-associated kinases, including the eukaryotic diacylglycerol kinases.	5.18383e-27
NZ_LR699010.1\|WP_111523868.1\|342908_343775_+\|ATP-synthase-F1-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	5.85037e-119
NZ_LR699010.1\|WP_111523869.1\|343814_345206_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_LR699010.1\|WP_111523852.1\|327073_327670_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	1.69689e-20
NZ_LR699010.1\|WP_111523855.1\|329511_330609_+\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	7.57227e-173
NZ_LR699010.1\|WP_111523853.1\|327678_328554_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|179097	PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional.	2.00328e-52

>NZ_LR699010.1|WP_111523859.1|334237_334993_+|hypothetical-protein
MSKKSGNHEPTESRAFKLTELTKYLVKMYKLPTKDKASLDEYTGDGLRGYRKQIERILKNTKVNGKSLYDICTPDDGGPRKISVSDFNKHCFPQWSDYLKNGKNEYDKEVLEREEKIYERAKIIQENAEYDDVYDNESEEIFIYSEEELEKHAMKLMIEGIFEAVCGEFDWRKLKYDLENKEYYLHPWNVEKIYPEEYFDGSELWNEEDGIFYTIPYEKLREDGRKTREPLEKSMENLKSYKNYIKDKDNE
>NZ_LR699010.1|WP_111523858.1|333420_334026_-|ATP-dependent-Clp-protease-proteolytic-subunit
MSFTTLLKTNCGISQVSLETRFFDKRCININGDITDILALDFTDKILELNLESDQPITILINSLGGEINSGLLMYDAIVGSKAPIRMICRGRAYSMGAILFACANERYMLPNSELMLHQPILGGNVAGNASSIKSISDSMLETKRKLNGLLSKHTGKTEEEIDIATSFDHYFLPDEAIGFNLCDKVIDFAKIIDLIKEEEW
>NZ_LR699010.1|WP_111523857.1|332068_333421_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MYRKTDRVVLGDGKDCIFSSDTNVTGINNNVMVVGGSGSGKTVSIAEPFLLESNNRNIITSVTKRRIVKKYTPLLEERGYKVWDLDFVHPENGNVSYDPLNYIKSYQDIIFIARAIVQANVDINNKNLDLYWYESATSLFVAIISYILIEYDDPDFSDVLEMVDKLSYSEKDGTIVTNYDSDFELLQKYNPLNMASVNWMSFKRLPVRTAGCVFSFLNTALATVFTPELRKMFKMKNRVNFNDFTKEKSALFITSSPVNPSLNSFINMFYAHTFKELFEIGEMQDSGVLPIPIHFLADDFATGCPVPLFDQYISIFREKGISVTLLIQSESQLSSLYGYQSSTTIINNCDTYVYMGSNDLATAKNISDRAGIMPEDCLSMKLGKQIIFRRGLKPIFCKRYNVFKNKKYQEITNKFKDSHVDKIVIKDRHSFIKELKRTAKKSEDSCIVDV
>NZ_LR699010.1|WP_111523856.1|330796_331936_-|hypothetical-protein
MKKKLFTLFLLSFLISSLSGCQSSKDSNTSSVAQESESLSKQEPSKEEKTTASSESDLTQASVDDKLSISESIYFPYENLNELTINEKTDKDSLKNIISKLPEIAEYIQLSDVELSNDSSTITIKYDEFYEGAIASRLYDIDLTPPGIDENPLYSSPYIFPRLDNNALLLIIANDSISYVNYEISVPEEFFDSKPLTLELARENFTKHLGDISDAREDKSLYDILLDHDNAIFANRIHLNGVVLGSEEEVLIKRYKEPNEKNGNNYIYLSEDSTITFRLEKGKTEDNLLTVTKISVRPLKKIIYEQFFPLSIGLLPEQNGDLSKSRVVGYLGEPRIKTSDTYYYRLTSGLSDYLYFTYDDNENVIEYGMVREELASKNH
>NZ_LR699010.1|WP_111523855.1|329511_330609_+|UDP-galactopyranose-mutase
MKYDFLVVGAGLFGAIFAYEAKKRGKSVLVIDKRNHIAGNIYTENVDGINVHKYGAHIFHTSNKKIWEYVNNFAEFNNYINAPVAIYKDELYNLPFNMNTFSKLWNIKTPDEAKAIIEKQRQESGITDPKNLEEQAISLVGKDVYEKLIKGYTEKQWGRDAKELPAFIIKRLPLRFTFDNNYFNDRYQGIPIGGYTGIVEKLLEGIEVRANTEYRDFIKENPDIADKTVYTGMIDEFFDYKLGVLEYRRVYFEDERLDTDNYQGNAVVNYTERDVKFTRIIEHKHFEYGNQDFTIISKEYPTEWQKGEEPYYPINNEKNNALYESYVELSKSRPEIIFGGRLGAYKYYDMDKVVEAALECVEKNL
>NZ_LR699010.1|WP_111523854.1|328531_329497_+|prenyltransferase
MERLKRLRVYFNEMFPLIPRLCLGYIVFLEIYFIVLLNHGVTGKKLLLFDKVKGQSDLISYFIQHDVIGVIIGGFTIFSFLLWLRIADDFKDYELDCRLFASRPLPSGRVHKDDLRIFAIILIGITIFINILFMRNFIFCLILYSYGSLMAVWFFQKHKIAKSLPLALVTHNPVQIILNIYVISYAIMKYKLPIFDITNLMAIMTLYFPALIWEISRKIRAPKEETEYVTYSKLFGYKKCVDFVFVLTWLDILTNVVLVWNLNKISVVAILANTVWCSMKFIEYKKNPTKYRIVSKVERYTYIQESMMIATIVIYLIVGKI
>NZ_LR699010.1|WP_111523853.1|327678_328554_+|phosphatidylserine-decarboxylase
MKIIDRRSGKIIKEEEDSAKIIGFLYHSFFGRLFLKLFFARPYFSKLLSIYYKSPLSKNKIKSFIKKYNLDRGLLQRNFKSFANFFSRKEKINVDNEGFLATASGKLRVFKIGYDGKLYLGNKKLSIMIKGNVYNTDKLLKAPLPDWARGGYLLLYRLSLCDYHRYIYPLTGRCEKRKEISGRLESVRRDAAYWRAFAENKRVLEYWKTNSGDMLHMEIGAMLVGHIHNHKKICFHKGEEKGFFSYGGSSIVEIVGREIEVDRDILENSKRNLETKIRIGERIGYGKVKKA
>NZ_LR699010.1|WP_111523852.1|327073_327670_+|CDP-alcohol-phosphatidyltransferase-family-protein
MKRIFLGVYHPSVILTYIGVLISIFGILFAESLYLATILLMLAGLCDAFDGIFARMYKRTEFEENFGVQIDSFADLISFGLFPAKIYISFFSKNIYISFVLVSFYILAVIIRLSYFNCKGSEDKLYFTGLAVTYSAFFISLYVVIAKYIESFLALPIECLYIFLILVFLWNKKIRKPNLYIRIAFLILAIVFIALLLI
>NZ_LR699010.1|WP_111523851.1|326496_327072_+|CDP-archaeol-synthase
MIISLYISMLPVILGGVFNMLFVKIKALDFLRIPIDGGKSLNGKRVFGDSKSLLGFIGMVLGTSIAAIIWGVFLKYMRLEHYNLIYKNYPNTVYFNLLSGALFGFAYMIFELPNSFIKRRFDIDATTRGRFPANMVTFVYDQIDSMIGVMLVLAIFAGLRFPQYILAVLLGGITHVAVNMILILFKVRKYL
>NZ_LR699010.1|WP_111523850.1|326134_326500_+|diacylglycerol-kinase
MKNKTFLKSIHCAIEGLIFALKTEKNYKYYIVIDIIFFLLDFFVFKPDKAGWFAYILTSAAVYGMECINTSIEHISDFISEEVHSEIKVIKDMGAAGVLCFGIAFFAVQIIECINYLGVVL
>NZ_LR699010.1|WP_111523861.1|336986_338183_-|cell-wall-binding-protein
MKHTIRKMLLTGALSGLLSLSTISAIYAAGWKSDNGTWTYIDEDGQTHKSWLQSSSGYYYMDLSNGVMTTGWKKIDSKWYYFKSNGIMATGWFKVGNEWFYTLSNGSLVQGSWLKSDSNYYYLRGSGAMATGWRQMDGAWYYFKPDGRAAFGWTKVGDKTYYFSGSAKMYTSWNEIDGIYYYFNADGSMKTGWINDGTHKYYMEEAEGENHGKMSFGFKKIAGTSYYFNEKGHMITGWVKLNDKYYYFESDGKMVAGKSITIEGKEYTFDANGVCTNISGTPSSVTNAISETKKAEGKEGSNAKATTETSKASTETSGSATLVPAPSEDKKESTQPTVPASTAGEPKKTDTTEDPKTKNPSETVKAKSPADETQKNPSNGSSSKDEVGLKPGETSGPK
>NZ_LR699010.1|WP_111523862.1|338540_338834_+|AtpZ/AtpI-family-protein
MEALRYLSLISQVGFTMVTPILLCTFIGIKLEQRFEFPFTLIFIILGVISGCMSGFKLIMNTIKKMDKKKIEADLQEQENSFASPKRESRIFKNKDE
>NZ_LR699010.1|WP_111523863.1|338826_339240_+|hypothetical-protein
MSKETKRTCLYMGMGVLLYEIILSLVSIPFAKLMKYSIYSMELGILVGTILVIGMVIDMGISTEDSLYGGSPSFAQRKIMIHSLLRKVALFIVVAIFWNSRYINALAIVISVFGLKSGAYMYPLFKKIFEKERKEET
>NZ_LR699010.1|WP_111523864.1|339236_339965_+|F0F1-ATP-synthase-subunit-A
MSLSILAESAAGSKNLDFMIHGLYEYKLFGQKLYLTTTTVSLLIVVLLITVFAIFANRAIKAVDPYNAPSGFVNFLECGIEALEGMTETILGANKDRFLNYIGTIFIFIFVSNFSGLLGLRNPTADYGVTFLLGLFTFLIVNFQGIKNRKLKHFTSLFEPIPLLFPINVIGEIANPISISLRLFANVLSGVLIMGLWYGMMPIFLKVGVPSFLHLYTDVFSGALQTYVFCMLSMVYINDKLE
>NZ_LR699010.1|WP_007594440.1|340044_340302_+|ATP-synthase-F0-subunit-C
MNMTGQDFIFGCSAIGAGLAMIAGIGPGVGQGIAAGHGAAAVGRNPGARADITSTMLLGQAVAETTGLYGLVVAMILMFVKPFGA
>NZ_LR699010.1|WP_111523865.1|340314_340830_+|F0F1-ATP-synthase-subunit-B
MERLIGFDPQLLADSAITGFAVLFLFFILSYLLFDPAKEMLKKRRERVAGDLESAKDAKAKADALKAEYEERLASFQKQADAILEDARKRAKDRENEIIEEAKAEARRITDRANNEIELAKKKAMEEVKSNIVDVASIIASKAVNSAMNVEVQDRLVEETLKEIGDGTWQN
>NZ_LR699010.1|WP_111523866.1|340817_341351_+|ATP-synthase-F1-subunit-delta
MAKLVSKVYGDAYVSVVSEKNNLIDALEEIKSVKNIFTENNEIMGLLDSPKMDDEEKIDFVKGIFENHISVDSLGFLLTIIEKKRQAELLSILEYVIDCIKELLLIGKATITTALPLDDAKKDKIVDELLKSSHYKSLEAEYVVDESIIGGIVIRIGDRVVDSSVKTRIDKMRKMLS
>NZ_LR699010.1|WP_111523867.1|341396_342896_+|F0F1-ATP-synthase-subunit-alpha
MNLRPEEISSVIKEQINKYSTKLEVSDVGTVIQVADGIARIHGLAKAMQGELLEFPGDVYGMVLNLEEDNVGAVLLGDKKNISEGDTVKTTGRVVEVPVGDALTGRVVNALGQPIDGKGPITSDTFRRIERVAHGVIERKSVDTPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTSIAVDTIINQKGQNVHCIYVAIGQKASTVASIVKTFEDYGAMDYTTVVVSTASDLAPLQYIAPYSGCAIGEEWMERGEDVLVVYDDLTKHAAAYRTLSLLLKRPPGREAYPGDVFYLHSRLLERASRLSEDLGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIYLETEMFNAGFRPAINAGLSVSRVGGSAQIKAMKKIAGPIRLELAQYRELASFAQFGSELDEATKNQLAQGERIREILKQPNYKPMPVEYQIIIIFAATRKLLLDVPTDKILEFEEKLFKFVESKHPEIAAEIRDKKEISDDLAKKLTDVINECKKA
>NZ_LR699010.1|WP_111523868.1|342908_343775_+|ATP-synthase-F1-subunit-gamma
MASMKEIKRRRAAIQNTAQITKAMKLVATVKLQKARAKAEASKPYFTMMYQTIASMLEKSENITHKYLKKNEGGKTGVLVVTGNRGLAGGYNNAVSRQVINEFESKNTLIYSVGKKGRDALLHKGFEVEGDFSEIVEEPLYNDAADITKVMLDDYESGKLSEIYVIYTNFKNTVVHDPVLLKLLPLSKEDLLQPETEVSEGPRALMNYSPNEDEVLDAIIPKYISSVIYGGLMQSVASENGARMTAMDSATSNAEELIDKLGLQYNRARQGAITQELTEIVAGANAIE
>NZ_LR699010.1|WP_111523869.1|343814_345206_+|F0F1-ATP-synthase-subunit-beta
MAEPNIGKITQIIGAVLDIKFSRGHLPQINEAIKIDTADGVLTVEVAQHLGDDIVRTIAMGSTDGLVRGMEARATGAPISVPVGENTLGRIFNVLGEAIDKKEPPKVDEYLPIHRKAPSFEEQSTQTEILETGIKVVDLLCPYQKGGKIGLFGGAGVGKTVLIQELIRNIATEHGGYSVFTGVGERTREGNDLYHEMTDSGVINKTTMVFGQMNEPPGARMRVGLTGLTMAEYFRDQGGKDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQAVYVPADDLTDPAPANTFAHLDATTVLDRSIVEMGIYPAVDPLGSTSRILSPHIVGEEHYQVAQRVQEVLQKYKELQDIIAMLGMDELSEDDKLTVARARKIQRFLSQPFFVATQFTGIDGKYVPLSETIRGFREILEGKHDDIPEQYFLNAGTIDEVVERASK

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Crispr_ID: NZ_LR699010_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_2

335745-336007

Orphan

Consensus_repeat	Method
CCATCCGGTCTGCATCTTACCGG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_LR699010_2

>merge|NZ_LR699010|2|335745-336007|CRISPRCasFinder
CCATCCGGTCTGCATCTTACCGGTATTGTCCATATAATATCTTTGACTACCGGAGTCTACCCATCCGGTCTGCATTTTACCGGCATTATCCATAAAATACCAGACATTGTTATCCTTTACCCAACCGGTAGCCATAATACCTGAAGGATATAGGAAGTAATTATCTTTTCCTTCTATAAGCCAACCGGTTTGCATTTTACCGTCTTTGTCAGCGTAGTATTTTTTACTGCTGTCAGTAAACCAGCCTGTAAGCATTTTTCCGT

>NZ_LR699010|2|2|335745-336007|CRISPRCasFinder
CCATCCGGTCTGCATCTTACCGG	TATTGTCCATATAATATCTTTGACTACCGGAGTCTAC
CCATCCGGTCTGCATTTTACCGG	CATTATCCATAAAATACCAGACATTGTTATCCTTTAC
CCAACCGGTAGCCATAATACCTG	AAGGATATAGGAAGTAATTATCTTTTCCTTCTATAAG
CCAACCGGTTTGCATTTTACCGT	CTTTGTCAGCGTAGTATTTTTTACTGCTGTCAGTAAA
CCAGCCTGTAAGCATTTTTCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111523859.1\|334237_334993_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111523856.1\|330796_331936_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111523863.1\|338826_339240_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111523865.1\|340314_340830_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|349951
NZ_LR699010.1\|WP_111523857.1\|332068_333421_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|367119
NZ_LR699010.1\|WP_111523861.1\|336986_338183_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_LR699010.1\|WP_111523864.1\|339236_339965_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_LR699010.1\|WP_111523866.1\|340817_341351_+\|ATP-synthase-F1-subunit-delta	unknown	unknown	gnl\|CDD\|365949
NZ_LR699010.1\|WP_111523858.1\|333420_334026_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|132928
NZ_LR699010.1\|WP_111523854.1\|328531_329497_+\|prenyltransferase	unknown	unknown	gnl\|CDD\|139690
NZ_LR699010.1\|WP_111523867.1\|341396_342896_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_LR699010.1\|WP_111523851.1\|326496_327072_+\|CDP-archaeol-synthase	unknown	unknown	gnl\|CDD\|235207
NZ_LR699010.1\|WP_111523862.1\|338540_338834_+\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_LR699010.1\|WP_007594440.1\|340044_340302_+\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|184068
NZ_LR699010.1\|WP_111523853.1\|327678_328554_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|179097
NZ_LR699010.1\|WP_111523850.1\|326134_326500_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260132
NZ_LR699010.1\|WP_111523868.1\|342908_343775_+\|ATP-synthase-F1-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_LR699010.1\|WP_111523869.1\|343814_345206_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_LR699010.1\|WP_111523852.1\|327073_327670_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224104
NZ_LR699010.1\|WP_111523855.1\|329511_330609_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111523866.1\|340817_341351_+\|ATP-synthase-F1-subunit-delta	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	3.02459e-38
NZ_LR699010.1\|WP_111523865.1\|340314_340830_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|349951	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b. Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.	5.05423e-29
NZ_LR699010.1\|WP_111523857.1\|332068_333421_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|367119	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.	2.17551e-28
NZ_LR699010.1\|WP_111523861.1\|336986_338183_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.32832e-28
NZ_LR699010.1\|WP_111523864.1\|339236_339965_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.26796e-47
NZ_LR699010.1\|WP_111523858.1\|333420_334026_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|132928	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	5.19105e-48
NZ_LR699010.1\|WP_111523854.1\|328531_329497_+\|prenyltransferase	gnl\|CDD\|139690	PRK13592, ubiA, prenyltransferase; Provisional.	1.32595e-102
NZ_LR699010.1\|WP_111523867.1\|341396_342896_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_LR699010.1\|WP_111523851.1\|326496_327072_+\|CDP-archaeol-synthase	gnl\|CDD\|235207	PRK04032, PRK04032, CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase.	1.49102e-13
NZ_LR699010.1\|WP_007594440.1\|340044_340302_+\|ATP-synthase-F0-subunit-C	gnl\|CDD\|184068	PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional.	1.05737e-25
NZ_LR699010.1\|WP_111523862.1\|338540_338834_+\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	1.37009e-13
NZ_LR699010.1\|WP_111523850.1\|326134_326500_+\|diacylglycerol-kinase	gnl\|CDD\|260132	cd14263, DAGK_IM_like, Integral membrane diacylglycerol kinase and similar enzymes. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of substrates such as diacylglycerol to phosphatidic acid or of undecaprenol to undecaprenyl phosphate. They are not related other cytosolic or membrane-associated kinases, including the eukaryotic diacylglycerol kinases.	5.18383e-27
NZ_LR699010.1\|WP_111523868.1\|342908_343775_+\|ATP-synthase-F1-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	5.85037e-119
NZ_LR699010.1\|WP_111523869.1\|343814_345206_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_LR699010.1\|WP_111523852.1\|327073_327670_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	1.69689e-20
NZ_LR699010.1\|WP_111523855.1\|329511_330609_+\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	7.57227e-173
NZ_LR699010.1\|WP_111523853.1\|327678_328554_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|179097	PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional.	2.00328e-52

>NZ_LR699010.1|WP_111523859.1|334237_334993_+|hypothetical-protein
MSKKSGNHEPTESRAFKLTELTKYLVKMYKLPTKDKASLDEYTGDGLRGYRKQIERILKNTKVNGKSLYDICTPDDGGPRKISVSDFNKHCFPQWSDYLKNGKNEYDKEVLEREEKIYERAKIIQENAEYDDVYDNESEEIFIYSEEELEKHAMKLMIEGIFEAVCGEFDWRKLKYDLENKEYYLHPWNVEKIYPEEYFDGSELWNEEDGIFYTIPYEKLREDGRKTREPLEKSMENLKSYKNYIKDKDNE
>NZ_LR699010.1|WP_111523858.1|333420_334026_-|ATP-dependent-Clp-protease-proteolytic-subunit
MSFTTLLKTNCGISQVSLETRFFDKRCININGDITDILALDFTDKILELNLESDQPITILINSLGGEINSGLLMYDAIVGSKAPIRMICRGRAYSMGAILFACANERYMLPNSELMLHQPILGGNVAGNASSIKSISDSMLETKRKLNGLLSKHTGKTEEEIDIATSFDHYFLPDEAIGFNLCDKVIDFAKIIDLIKEEEW
>NZ_LR699010.1|WP_111523857.1|332068_333421_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MYRKTDRVVLGDGKDCIFSSDTNVTGINNNVMVVGGSGSGKTVSIAEPFLLESNNRNIITSVTKRRIVKKYTPLLEERGYKVWDLDFVHPENGNVSYDPLNYIKSYQDIIFIARAIVQANVDINNKNLDLYWYESATSLFVAIISYILIEYDDPDFSDVLEMVDKLSYSEKDGTIVTNYDSDFELLQKYNPLNMASVNWMSFKRLPVRTAGCVFSFLNTALATVFTPELRKMFKMKNRVNFNDFTKEKSALFITSSPVNPSLNSFINMFYAHTFKELFEIGEMQDSGVLPIPIHFLADDFATGCPVPLFDQYISIFREKGISVTLLIQSESQLSSLYGYQSSTTIINNCDTYVYMGSNDLATAKNISDRAGIMPEDCLSMKLGKQIIFRRGLKPIFCKRYNVFKNKKYQEITNKFKDSHVDKIVIKDRHSFIKELKRTAKKSEDSCIVDV
>NZ_LR699010.1|WP_111523856.1|330796_331936_-|hypothetical-protein
MKKKLFTLFLLSFLISSLSGCQSSKDSNTSSVAQESESLSKQEPSKEEKTTASSESDLTQASVDDKLSISESIYFPYENLNELTINEKTDKDSLKNIISKLPEIAEYIQLSDVELSNDSSTITIKYDEFYEGAIASRLYDIDLTPPGIDENPLYSSPYIFPRLDNNALLLIIANDSISYVNYEISVPEEFFDSKPLTLELARENFTKHLGDISDAREDKSLYDILLDHDNAIFANRIHLNGVVLGSEEEVLIKRYKEPNEKNGNNYIYLSEDSTITFRLEKGKTEDNLLTVTKISVRPLKKIIYEQFFPLSIGLLPEQNGDLSKSRVVGYLGEPRIKTSDTYYYRLTSGLSDYLYFTYDDNENVIEYGMVREELASKNH
>NZ_LR699010.1|WP_111523855.1|329511_330609_+|UDP-galactopyranose-mutase
MKYDFLVVGAGLFGAIFAYEAKKRGKSVLVIDKRNHIAGNIYTENVDGINVHKYGAHIFHTSNKKIWEYVNNFAEFNNYINAPVAIYKDELYNLPFNMNTFSKLWNIKTPDEAKAIIEKQRQESGITDPKNLEEQAISLVGKDVYEKLIKGYTEKQWGRDAKELPAFIIKRLPLRFTFDNNYFNDRYQGIPIGGYTGIVEKLLEGIEVRANTEYRDFIKENPDIADKTVYTGMIDEFFDYKLGVLEYRRVYFEDERLDTDNYQGNAVVNYTERDVKFTRIIEHKHFEYGNQDFTIISKEYPTEWQKGEEPYYPINNEKNNALYESYVELSKSRPEIIFGGRLGAYKYYDMDKVVEAALECVEKNL
>NZ_LR699010.1|WP_111523854.1|328531_329497_+|prenyltransferase
MERLKRLRVYFNEMFPLIPRLCLGYIVFLEIYFIVLLNHGVTGKKLLLFDKVKGQSDLISYFIQHDVIGVIIGGFTIFSFLLWLRIADDFKDYELDCRLFASRPLPSGRVHKDDLRIFAIILIGITIFINILFMRNFIFCLILYSYGSLMAVWFFQKHKIAKSLPLALVTHNPVQIILNIYVISYAIMKYKLPIFDITNLMAIMTLYFPALIWEISRKIRAPKEETEYVTYSKLFGYKKCVDFVFVLTWLDILTNVVLVWNLNKISVVAILANTVWCSMKFIEYKKNPTKYRIVSKVERYTYIQESMMIATIVIYLIVGKI
>NZ_LR699010.1|WP_111523853.1|327678_328554_+|phosphatidylserine-decarboxylase
MKIIDRRSGKIIKEEEDSAKIIGFLYHSFFGRLFLKLFFARPYFSKLLSIYYKSPLSKNKIKSFIKKYNLDRGLLQRNFKSFANFFSRKEKINVDNEGFLATASGKLRVFKIGYDGKLYLGNKKLSIMIKGNVYNTDKLLKAPLPDWARGGYLLLYRLSLCDYHRYIYPLTGRCEKRKEISGRLESVRRDAAYWRAFAENKRVLEYWKTNSGDMLHMEIGAMLVGHIHNHKKICFHKGEEKGFFSYGGSSIVEIVGREIEVDRDILENSKRNLETKIRIGERIGYGKVKKA
>NZ_LR699010.1|WP_111523852.1|327073_327670_+|CDP-alcohol-phosphatidyltransferase-family-protein
MKRIFLGVYHPSVILTYIGVLISIFGILFAESLYLATILLMLAGLCDAFDGIFARMYKRTEFEENFGVQIDSFADLISFGLFPAKIYISFFSKNIYISFVLVSFYILAVIIRLSYFNCKGSEDKLYFTGLAVTYSAFFISLYVVIAKYIESFLALPIECLYIFLILVFLWNKKIRKPNLYIRIAFLILAIVFIALLLI
>NZ_LR699010.1|WP_111523851.1|326496_327072_+|CDP-archaeol-synthase
MIISLYISMLPVILGGVFNMLFVKIKALDFLRIPIDGGKSLNGKRVFGDSKSLLGFIGMVLGTSIAAIIWGVFLKYMRLEHYNLIYKNYPNTVYFNLLSGALFGFAYMIFELPNSFIKRRFDIDATTRGRFPANMVTFVYDQIDSMIGVMLVLAIFAGLRFPQYILAVLLGGITHVAVNMILILFKVRKYL
>NZ_LR699010.1|WP_111523850.1|326134_326500_+|diacylglycerol-kinase
MKNKTFLKSIHCAIEGLIFALKTEKNYKYYIVIDIIFFLLDFFVFKPDKAGWFAYILTSAAVYGMECINTSIEHISDFISEEVHSEIKVIKDMGAAGVLCFGIAFFAVQIIECINYLGVVL
>NZ_LR699010.1|WP_111523861.1|336986_338183_-|cell-wall-binding-protein
MKHTIRKMLLTGALSGLLSLSTISAIYAAGWKSDNGTWTYIDEDGQTHKSWLQSSSGYYYMDLSNGVMTTGWKKIDSKWYYFKSNGIMATGWFKVGNEWFYTLSNGSLVQGSWLKSDSNYYYLRGSGAMATGWRQMDGAWYYFKPDGRAAFGWTKVGDKTYYFSGSAKMYTSWNEIDGIYYYFNADGSMKTGWINDGTHKYYMEEAEGENHGKMSFGFKKIAGTSYYFNEKGHMITGWVKLNDKYYYFESDGKMVAGKSITIEGKEYTFDANGVCTNISGTPSSVTNAISETKKAEGKEGSNAKATTETSKASTETSGSATLVPAPSEDKKESTQPTVPASTAGEPKKTDTTEDPKTKNPSETVKAKSPADETQKNPSNGSSSKDEVGLKPGETSGPK
>NZ_LR699010.1|WP_111523862.1|338540_338834_+|AtpZ/AtpI-family-protein
MEALRYLSLISQVGFTMVTPILLCTFIGIKLEQRFEFPFTLIFIILGVISGCMSGFKLIMNTIKKMDKKKIEADLQEQENSFASPKRESRIFKNKDE
>NZ_LR699010.1|WP_111523863.1|338826_339240_+|hypothetical-protein
MSKETKRTCLYMGMGVLLYEIILSLVSIPFAKLMKYSIYSMELGILVGTILVIGMVIDMGISTEDSLYGGSPSFAQRKIMIHSLLRKVALFIVVAIFWNSRYINALAIVISVFGLKSGAYMYPLFKKIFEKERKEET
>NZ_LR699010.1|WP_111523864.1|339236_339965_+|F0F1-ATP-synthase-subunit-A
MSLSILAESAAGSKNLDFMIHGLYEYKLFGQKLYLTTTTVSLLIVVLLITVFAIFANRAIKAVDPYNAPSGFVNFLECGIEALEGMTETILGANKDRFLNYIGTIFIFIFVSNFSGLLGLRNPTADYGVTFLLGLFTFLIVNFQGIKNRKLKHFTSLFEPIPLLFPINVIGEIANPISISLRLFANVLSGVLIMGLWYGMMPIFLKVGVPSFLHLYTDVFSGALQTYVFCMLSMVYINDKLE
>NZ_LR699010.1|WP_007594440.1|340044_340302_+|ATP-synthase-F0-subunit-C
MNMTGQDFIFGCSAIGAGLAMIAGIGPGVGQGIAAGHGAAAVGRNPGARADITSTMLLGQAVAETTGLYGLVVAMILMFVKPFGA
>NZ_LR699010.1|WP_111523865.1|340314_340830_+|F0F1-ATP-synthase-subunit-B
MERLIGFDPQLLADSAITGFAVLFLFFILSYLLFDPAKEMLKKRRERVAGDLESAKDAKAKADALKAEYEERLASFQKQADAILEDARKRAKDRENEIIEEAKAEARRITDRANNEIELAKKKAMEEVKSNIVDVASIIASKAVNSAMNVEVQDRLVEETLKEIGDGTWQN
>NZ_LR699010.1|WP_111523866.1|340817_341351_+|ATP-synthase-F1-subunit-delta
MAKLVSKVYGDAYVSVVSEKNNLIDALEEIKSVKNIFTENNEIMGLLDSPKMDDEEKIDFVKGIFENHISVDSLGFLLTIIEKKRQAELLSILEYVIDCIKELLLIGKATITTALPLDDAKKDKIVDELLKSSHYKSLEAEYVVDESIIGGIVIRIGDRVVDSSVKTRIDKMRKMLS
>NZ_LR699010.1|WP_111523867.1|341396_342896_+|F0F1-ATP-synthase-subunit-alpha
MNLRPEEISSVIKEQINKYSTKLEVSDVGTVIQVADGIARIHGLAKAMQGELLEFPGDVYGMVLNLEEDNVGAVLLGDKKNISEGDTVKTTGRVVEVPVGDALTGRVVNALGQPIDGKGPITSDTFRRIERVAHGVIERKSVDTPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTSIAVDTIINQKGQNVHCIYVAIGQKASTVASIVKTFEDYGAMDYTTVVVSTASDLAPLQYIAPYSGCAIGEEWMERGEDVLVVYDDLTKHAAAYRTLSLLLKRPPGREAYPGDVFYLHSRLLERASRLSEDLGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIYLETEMFNAGFRPAINAGLSVSRVGGSAQIKAMKKIAGPIRLELAQYRELASFAQFGSELDEATKNQLAQGERIREILKQPNYKPMPVEYQIIIIFAATRKLLLDVPTDKILEFEEKLFKFVESKHPEIAAEIRDKKEISDDLAKKLTDVINECKKA
>NZ_LR699010.1|WP_111523868.1|342908_343775_+|ATP-synthase-F1-subunit-gamma
MASMKEIKRRRAAIQNTAQITKAMKLVATVKLQKARAKAEASKPYFTMMYQTIASMLEKSENITHKYLKKNEGGKTGVLVVTGNRGLAGGYNNAVSRQVINEFESKNTLIYSVGKKGRDALLHKGFEVEGDFSEIVEEPLYNDAADITKVMLDDYESGKLSEIYVIYTNFKNTVVHDPVLLKLLPLSKEDLLQPETEVSEGPRALMNYSPNEDEVLDAIIPKYISSVIYGGLMQSVASENGARMTAMDSATSNAEELIDKLGLQYNRARQGAITQELTEIVAGANAIE
>NZ_LR699010.1|WP_111523869.1|343814_345206_+|F0F1-ATP-synthase-subunit-beta
MAEPNIGKITQIIGAVLDIKFSRGHLPQINEAIKIDTADGVLTVEVAQHLGDDIVRTIAMGSTDGLVRGMEARATGAPISVPVGENTLGRIFNVLGEAIDKKEPPKVDEYLPIHRKAPSFEEQSTQTEILETGIKVVDLLCPYQKGGKIGLFGGAGVGKTVLIQELIRNIATEHGGYSVFTGVGERTREGNDLYHEMTDSGVINKTTMVFGQMNEPPGARMRVGLTGLTMAEYFRDQGGKDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQAVYVPADDLTDPAPANTFAHLDATTVLDRSIVEMGIYPAVDPLGSTSRILSPHIVGEEHYQVAQRVQEVLQKYKELQDIIAMLGMDELSEDDKLTVARARKIQRFLSQPFFVATQFTGIDGKYVPLSETIRGFREILEGKHDDIPEQYFLNAGTIDEVVERASK

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Crispr_ID: NZ_LR699010_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_3

678498-678589

Orphan

Consensus_repeat	Method
ATTAGAATATGACCAGAATGGAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR699010_3

>merge|NZ_LR699010|3|678498-678589|CRISPRCasFinder
ATTAGAATATGACCAGAATGGAATGCAAAGTTTGTGTGTGTTATTATTCACTCTTATCACCTTTATAATTAGAATATGACCAAAATGGAATG

>NZ_LR699010|3|3|678498-678589|CRISPRCasFinder
ATTAGAATATGACCAGAATGGAATG	CAAAGTTTGTGTGTGTTATTATTCACTCTTATCACCTTTATA
ATTAGAATATGACCAAAATGGAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111525201.1\|684323_684677_+\|DUF3796-domain-containing-protein	unknown	unknown	gnl\|CDD\|372251
NZ_LR699010.1\|WP_111525200.1\|685172_685916_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LR699010.1\|WP_111525212.1\|671701_672793_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270381
NZ_LR699010.1\|WP_111525205.1\|680539_681310_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_LR699010.1\|WP_111525213.1\|670900_671689_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_LR699010.1\|WP_111525211.1\|672927_673275_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898
NZ_LR699010.1\|WP_111525199.1\|686011_686920_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NZ_LR699010.1\|WP_111525208.1\|674845_676345_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_LR699010.1\|WP_162902542.1\|689308_689458_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223014
NZ_LR699010.1\|WP_111525214.1\|670082_670904_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_LR699010.1\|WP_081457417.1\|676411_676627_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111525261.1\|668465_668999_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339
NZ_LR699010.1\|WP_111525198.1\|686930_687695_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NZ_LR699010.1\|WP_111525209.1\|674398_674815_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111525206.1\|678637_680530_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
NZ_LR699010.1\|WP_111525195.1\|689459_689912_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_LR699010.1\|WP_111525196.1\|688616_689288_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_LR699010.1\|WP_111525215.1\|669013_670090_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_LR699010.1\|WP_111525207.1\|676610_677081_+\|DUF5071-domain-containing-protein	unknown	unknown	gnl\|CDD\|213039
NZ_LR699010.1\|WP_111525197.1\|687691_688597_+\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111525201.1\|684323_684677_+\|DUF3796-domain-containing-protein	gnl\|CDD\|372251	pfam12676, DUF3796, Protein of unknown function (DUF3796). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.	3.60391e-05
NZ_LR699010.1\|WP_111525200.1\|685172_685916_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.64572e-10
NZ_LR699010.1\|WP_111525212.1\|671701_672793_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270381	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This group represents the periplasmic substrate-binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.34136e-137
NZ_LR699010.1\|WP_111525205.1\|680539_681310_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.88085e-90
NZ_LR699010.1\|WP_111525213.1\|670900_671689_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.17349e-72
NZ_LR699010.1\|WP_111525211.1\|672927_673275_-\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	0.00145516
NZ_LR699010.1\|WP_111525199.1\|686011_686920_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	1.65044e-103
NZ_LR699010.1\|WP_111525208.1\|674845_676345_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	1.93617e-37
NZ_LR699010.1\|WP_162902542.1\|689308_689458_+\|hypothetical-protein	gnl\|CDD\|223014	PHA03231, PHA03231, glycoprotein BALF4; Provisional.	0.00805115
NZ_LR699010.1\|WP_111525214.1\|670082_670904_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	6.94342e-73
NZ_LR699010.1\|WP_111525261.1\|668465_668999_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	7.69477e-27
NZ_LR699010.1\|WP_111525198.1\|686930_687695_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	3.72106e-105
NZ_LR699010.1\|WP_111525195.1\|689459_689912_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	4.81101e-24
NZ_LR699010.1\|WP_111525206.1\|678637_680530_+\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	0.00698871
NZ_LR699010.1\|WP_111525196.1\|688616_689288_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	3.11665e-62
NZ_LR699010.1\|WP_111525215.1\|669013_670090_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.02059e-163
NZ_LR699010.1\|WP_111525207.1\|676610_677081_+\|DUF5071-domain-containing-protein	gnl\|CDD\|213039	cd11743, Cthe_2751_like, Uncharacterized protein domain similar to Clostridium thermocellum 2751. Cthe_2751 has been found to form homodimers. Based on structural similarity to other families, a role in processing nucleic acids was suggested, though interactions with DNA could not be demonstrated.	0.000107316
NZ_LR699010.1\|WP_111525197.1\|687691_688597_+\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	5.92828e-171

>NZ_LR699010.1|WP_111525207.1|676610_677081_+|DUF5071-domain-containing-protein
MSAVIDNLISKEEYNIYENRNISDENLEELAVLFQMEGNNLEDYLYLGNYKSKFCWFNILHIIEKMKYSMKIRYIPFLIRLLQDANWPAFEYAVSLLFSYNKSDLIPFIEDALWKAYKSDDGMWISGIDILLEHIPIKPSEFENPKTYGLLKYGDF
>NZ_LR699010.1|WP_081457417.1|676411_676627_+|hypothetical-protein
MTTMEAVNATGVLEAVIDRPNHVSVRPVNPLEMMEWINSRPTAKENPYYLTKILASISIRDNGGPCNVSSD
>NZ_LR699010.1|WP_111525208.1|674845_676345_+|leucine-rich-repeat-domain-containing-protein
MVKNKILTKYVILTLLICSLIVLYLIITNLEYKIVVRDNTFIGIKDGIFKKKSDIVDFDIPYGVVSIGAFAFSSCDNLQSVNLPETVNSVDNYAFFECKKLQEIKLSSNLESIGDMSFYNCETLKYIELPNTLNEIGSSSFAECKNLKKIILPDSLESIGEFAFENCTNLREVKMSDSVSKVGENIFEGTEFINSLKPDEYGCIYLGNLLLKANDTKEYVKIKDSTKAIAAKAFINNIRIKNVDLPLGLIEIEDSTFEGCRTLESVIIPQGVKYLGEYAFLNSGLKRVVLPAGLEEISYGAFKDCYNLVEINLPSSIIDIKGGSFYGTKYLDSIKEDEYGCKYKENILLEYTGKSAEKIEIKAGTRLIAGSAFNNAESIKEVYIPKSVDHIGRYTFTKCHNLEKVEFEEDGKLTTVNGHSFDLCSNLKEIKLPKNIKTISEYAFFACGIETLRIPEKVEDMDLWAIAQCLSLKRIELPKSLKGKYYYPDYRPKIDLVFY
>NZ_LR699010.1|WP_111525209.1|674398_674815_+|hypothetical-protein
MSVGLGSNEKIIADLSAIIGKLAGPSSLALSVISLFLATLPKPFLERLRFELDKNQYSFIKITLFDVNPSTEEIVGGYNIDDFKIEKISDYENKVMDIYGEKYWIGEFGMISKIKPNPNSNKSIDEQIRDNIKKYSMR
>NZ_LR699010.1|WP_111525211.1|672927_673275_-|VOC-family-protein
MRKIEIKSLVSVFKVSNIEKSIAWYKNWLGEPDVIPMDGVAEYQLSSNSWLQLSCEEKDSIETSSIVVGVEDINQTKKTLDECGIKTSEIIDYEVVLVFDVFDIDGNKITFAKEV
>NZ_LR699010.1|WP_111525212.1|671701_672793_+|ABC-transporter-substrate-binding-protein
MKKKFVSIMTLMSMLSVAVLSGCGKSDAGAKAGSAGELYVYNWGEYIDESVVEEFEKETGIKVVYDMFETNEEMYPVLEAGGVVYDVVCPSDYMIEKMIQNDMLAEINFNNVPNIKNIDTKYMDMAKSFDPENKYAVPYTWGTVGILYNTSMVDDEITSWSDLWNPKYQGNILMQDSVRDAFMVGEKMLGYSMNTTDKAELEKVKEKLIEQKPLVQAYVIDQVRDKMIGGEAAIGVIYSGEMLYVQNEVANSGEDFELKYVIPKEGTNLWIDAWVIPKNAKNKENAEKWIDFLNRPEIAKKNFEYITYPTPNKAAFELLDKELQENTALFPTDDMLKNSEVFKYLGDEGDSLYNDLWKEVKGK
>NZ_LR699010.1|WP_111525213.1|670900_671689_+|ABC-transporter-permease
MIYSKIRKVLGDFYLVFILIFLYAPIATLMILSFNASKSRNRWGGFTFDWYGELFKSATIMSAFRNTLVIAFLSALIATIIGTVAAIGINNMRKVPKTVVMAVNNIPMLNADIVTGISLMLGFIAFGISLGFKTILISHITFNIPYVILSVMPKLKQTERVTYEAALDLGATPIMAFFKVVFPDIFPGVISGFLLAFTMSLDDFIITHFTKGAGINTISTLVYSEVRRGIKPSLYALSTIIFATVLILLIVSNIAQNKIKKR
>NZ_LR699010.1|WP_111525214.1|670082_670904_+|ABC-transporter-permease
MNKDLRKVLSFPYILWMIGFTIIPLSLIFIYGLTDRSGSFTVANVLSIFAKDHFKALLLSIILSIVSTAICLVMAFPLALTLKSKKLNKGSLIVFIFILPMWMNFLLRTLAWLSLLEKNGIINTILNFLHLPNLNIINTPSAIILGMVYNYLPFMVLPIYNVLEKIDDNTINAARDLGANTMQTLTKVIIPLSIPGIVSGITMVFVPALTTFVISNILGGSKVLLIGNVIEQEFTKGSNWNLGSGLSLVMMIFILISMAFIAKYDKDGEGMSV
>NZ_LR699010.1|WP_111525215.1|669013_670090_+|ABC-transporter-ATP-binding-protein
MSTSLIDLENISKSFDGEIVLDDLNLSIKENSFVTLLGPSGCGKTTTLRIIGGFVQADTGRVIFDGKDISNLPPNKRNLNTVFQKYALFPHMSIAENIAFGLKIKNKSKAYIDDKIKYALKLVNLSGYENRNINLLSGGQQQRIAIARAIVNEPKVLLLDEPLGALDLKLRQDMQYELIRLKNELGITFVYVTHDQEEALTMSDTIVVMNQGYIQQMGTPEQIYNEPENAFVADFIGESNIIGGTMVQDKLVDIFGAKFACVDVGFGINKPVDVVIRPEDIDLVEPEKGTLVGRVTHLIFKGVHYEMEVTTPNGYEWLVHSTDMFPVGKEVGISVDPFDIQIMNKPESEDEEAVGVNE
>NZ_LR699010.1|WP_111525261.1|668465_668999_+|helix-turn-helix-domain-containing-protein
MEIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENDITSPSIATLLDILQCLGVEIKDFFDEEAETQVVFTEEDYFIKEDKELNNTIKWIIPNAQKNMMEPILQTIEPGGLTYPDNPHDGEEFGYILSGTVEIHRGNDVYLAKKGEAFYFTSDKKHYISSKRGARLIWVSTPPNF
>NZ_LR699010.1|WP_111525206.1|678637_680530_+|ABC-transporter-permease
MLYTLILKNMKSKYKDYIFYLVSSVIAVAGYIIISSYLNAMREVVKIENIKIMNSEISTLKWISYVFLLISLCFIIYTFLNYTKKKSRDYAIFIILGQKKSNLFKCIIIELLATYIVSMILGSMIGASFYYGSIYFFRKVFLYEFPMVIYPIKSYIFIYMIYFALYFISALCIYIKIRKMKLNDLLIEEQRADTLAKKGWYRFVFGIILSILSLYVILIQQGDIILRTFSSILLISIGLYFIFLSMAFPILQLLRGETKLYYKNFLFISNFVFRFNKFSKIIYFSLLSGIILLIFIGANIYNNIYANTVESYQMMYPNDFVIESYSVPNTLIESLKNSKIPMDISELEVSEIKNNQNIGNIRCVDIERYNTFRNKNWTLKSGEIIGIDLKLEEDFEALNGDSFISIYTINGQQFDYSIKSRYWENIFGVFENYGNEYLFLMNHRDYEDISRHGQNKHIIFVNAKEHGDQNRIKQVLNDYEQQDEMKVRIYEKDKYVEINRNVILCMLIVFVLVAIVITIFKNSAIYINTFSQIDYLSEKYKAYYIMGMNKKTIANTATRELQLPFLIPVILACILSMMYLYILSGVNRVEQRSQIYTFFAIFIVGYLTLEYIYYKILKKQFISYILRRLG
>NZ_LR699010.1|WP_111525205.1|680539_681310_+|ABC-transporter-ATP-binding-protein
MNEVIKAVDLTKIYNKRDKKKRGEISVNLNQVLNGVSLEVYHGDFISIMGKSGCGKTTLLKILGGIEEATTGRAIVGDINLSSCSDEILSDVRQKIVGFVFQEFYLVDSLTLKENILLPLYISNKPYREIESLILENAKRFEIEKILDKYPTEVSGGEKQRTAICRAIINEPKIILADEPTGNLDSINSEIVIKYFERLNLEENRTILMVTHDPTIASYSKKVLLMKDGAIVKQIEKENGEDKKNFIQRIVEIMDY
>NZ_LR699010.1|WP_111525201.1|684323_684677_+|DUF3796-domain-containing-protein
MENLENKKVYRFKKFLGFLGLLGFLGFLGFVFDNVAFFHFFSFYCFFSYFFVNDTQSIKNKDDKRHTLYRGILAVIFTANIVITNSGYIHDKYSAMTILISVAFAIAVIVDTIIGRS
>NZ_LR699010.1|WP_111525200.1|685172_685916_-|GNAT-family-N-acetyltransferase
MNIIKRRVLSEDMINQINSIVEAQDKEQHLPLYFDFSDERCAYYLCYENENLMSVLALFEIDTNVYEVIAFTDINNRKKGYFKSLLDHLSNDLKSGAKVSFLCERNYTPAIATADRLSLIYDCTETMMELDLSTYVIEKKLDIDIFEDDDDIYYIYYRDEEIGSFNFYTFSFDINDIYFHSFNIYDEYRNKGLGKLSMMAIISFIKNLGKTKIHLQLLLENKPAYKIYTDLGFCISSEISYYKKFIQ
>NZ_LR699010.1|WP_111525199.1|686011_686920_+|orotidine-5'-phosphate-decarboxylase
MIAKLIEKIKQTNAPICVGLDPLISHIPDYILEEKIKKYGKSTKAIGEAFFEFNKEIIDKTYDLIPSVKPQIAMYEEFGIEGMIAYQKSVEYAKEKGLLVIGDAKRGDIGSTSLAYAKAHIGVSDILGEKIVGFNTDFVTVNPYLGTDGVKPFIDVCNSEDKGIFVLVKTSNPSSGEFQDQLIDGIPLYELVAKKTCEWGAMSMDGNYSNVGAVVGATYPKMSAILREKMPNTFFLVPGYGAQGGTAEDLKPCFNKDGLGAVVNSSRGIIAAYKQEKYSVMEFGDAARAAVKDMIVDINRVL
>NZ_LR699010.1|WP_111525198.1|686930_687695_+|dihydroorotate-dehydrogenase-electron-transfer-subunit
MTKIMDNGKVLSQDELSKDIYSIWIKTNIAKTTRPGQFVNVYTKDPSKILPRPISICEVGKDSIRLVYRVTGESAGTKEFSSLKSGDTIKVLGPLGNGFPIDSKSTILIGGGIGIPPMLETAKQIDGEKIIVLGFRDSDTFLTEELESYGRVYIATEDGSIGTKGNVLDVIRENNLSAKRILACGPTPMLRAIKKYVSESNIECFLSLEEKMACGIGACLACTCKSSDIDSHSKVKNKRVCTEGPVFIASEVEL
>NZ_LR699010.1|WP_111525197.1|687691_688597_+|dihydroorotate-dehydrogenase
MTNIKVKIAGVEFKNPVTVASGTFGHGEEFADLVDINRLGAVTTKGVANIPWEGNPTPRIAEVYGGMLNAIGLQNPGVDTFIERDLKFLKEKDTKIIVNVCGRSIEDYIETVERLSTEDVDMFEINISCPNVSHGGIAFGTNVDSVSEITKQIKTHSKKPIIMKLSPNVTDITEIARAAEAAGSDALSLINTITGMKIDINKRCFAIANRTGGMSGPAIKPIALRMVYQVANAVNIPIIGMGGISGTEDAIEFILAGATMVSVGTANFINPNASIEVAEGIEKYLENNGFNDINEIIGLVK
>NZ_LR699010.1|WP_111525196.1|688616_689288_+|orotate-phosphoribosyltransferase
MENYKKEFIDFMIDCEVLKFGDFVTKSGRNTPFFVNTGFYRSGAQLSKLGKYYAEAIRGAFGDNFDILFGPAYKGIPLSVATSMALSEEGVDVKYCSNRKEVKDHGDTGILLGSPIKDGDKIVIIEDVTTAGTSIEETLPVIKAQGNVDVLGLVVSVDRCERGQGEKSALVEISEKYGIKTTAIVTMNEVVEYLYNKEVGGRVIIDDKLKAAIDEYYKIYGVK
>NZ_LR699010.1|WP_162902542.1|689308_689458_+|hypothetical-protein
MEKTYKLMKFCGGAGIAIGIVMIVVGVATGVMSIVNGARLLAGKNYIEF
>NZ_LR699010.1|WP_111525195.1|689459_689912_+|VanZ-family-protein
MNKLENKFRFIGMILFIIYLLMLLYFLFFAEAFGRGMAVEAHGCNTTPFLEIKRYINNFDKLGMITVINLGGNVLAFMPFGFFRPIIGRRKNSFFRTLIQGCVFSCVVEIIQLLTNVGSFDVDDIILNTFGVFLGYIVFILWKFIIWRRK

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Crispr_ID: NZ_LR699010_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_4

829118-829219

Orphan

Consensus_repeat	Method
TATATAGGAGGAATTGCAGGTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR699010_4

>merge|NZ_LR699010|4|829118-829219|CRISPRCasFinder
TATATAGGAGGAATTGCAGGTTATAGTGAAAATCTTATAAAAGATTCTTATATGCTTGGAGATGTAAGAGGAATGGACTATATAGGAGGAATTGCAGGTATT

>NZ_LR699010|4|4|829118-829219|CRISPRCasFinder
TATATAGGAGGAATTGCAGGTTAT	AGTGAAAATCTTATAAAAGATTCTTATATGCTTGGAGATGTAAGAGGAATGGAC
TATATAGGAGGAATTGCAGGTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111525649.1\|840701_842081_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
NZ_LR699010.1\|WP_119808251.1\|813848_815237_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_LR699010.1\|WP_111525659.1\|824784_827121_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|223964
NZ_LR699010.1\|WP_111525661.1\|820848_821646_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_LR699010.1\|WP_111525662.1\|819673_820708_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_LR699010.1\|WP_111525650.1\|839217_840705_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NZ_LR699010.1\|WP_111525654.1\|832674_833028_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237019
NZ_LR699010.1\|WP_111525665.1\|817193_817847_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_LR699010.1\|WP_111525664.1\|817848_818901_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568
NZ_LR699010.1\|WP_111525663.1\|818917_819673_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_LR699010.1\|WP_111525648.1\|842061_844293_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_LR699010.1\|WP_111525653.1\|833215_834379_+\|NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|223140
NZ_LR699010.1\|WP_162902593.1\|815295_817011_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_LR699010.1\|WP_111525459.1\|811329_813510_+\|alpha-galactosidase	unknown	unknown	gnl\|CDD\|307952
NZ_LR699010.1\|WP_111525660.1\|821953_824533_+\|selenium-dependent-xanthine-dehydrogenase	unknown	unknown	gnl\|CDD\|132354
NZ_LR699010.1\|WP_111525651.1\|837504_839175_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_LR699010.1\|WP_111525657.1\|830275_830926_+\|lipolytic-enzyme,-G-D-S-L	unknown	unknown	gnl\|CDD\|238877
NZ_LR699010.1\|WP_111525655.1\|831842_832628_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|223422
NZ_LR699010.1\|WP_111525652.1\|834546_837483_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_LR699010.1\|WP_111525656.1\|830922_831834_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111525649.1\|840701_842081_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	2.12102e-133
NZ_LR699010.1\|WP_119808251.1\|813848_815237_+\|ISNCY-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.97783e-08
NZ_LR699010.1\|WP_111525659.1\|824784_827121_+\|MMPL-family-transporter	gnl\|CDD\|223964	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only].	2.54058e-59
NZ_LR699010.1\|WP_111525661.1\|820848_821646_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.01618e-25
NZ_LR699010.1\|WP_111525662.1\|819673_820708_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.06043e-82
NZ_LR699010.1\|WP_111525650.1\|839217_840705_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	3.1324e-164
NZ_LR699010.1\|WP_111525654.1\|832674_833028_-\|hypothetical-protein	gnl\|CDD\|237019	PRK11907, PRK11907, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase.	0.00282813
NZ_LR699010.1\|WP_111525665.1\|817193_817847_-\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	4.90878e-26
NZ_LR699010.1\|WP_111525664.1\|817848_818901_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.56188e-45
NZ_LR699010.1\|WP_111525663.1\|818917_819673_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.21683e-103
NZ_LR699010.1\|WP_111525648.1\|842061_844293_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_LR699010.1\|WP_111525653.1\|833215_834379_+\|NAD(P)H-hydrate-epimerase	gnl\|CDD\|223140	COG0062, COG0062, Uncharacterized conserved protein [Function unknown].	1.81612e-43
NZ_LR699010.1\|WP_162902593.1\|815295_817011_+\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.79486e-25
NZ_LR699010.1\|WP_111525459.1\|811329_813510_+\|alpha-galactosidase	gnl\|CDD\|307952	pfam02065, Melibiase, Melibiase. Glycoside hydrolase families GH27, GH31 and GH36 form the glycoside hydrolase clan GH-D. Glycoside hydrolase family 36 can be split into 11 families, GH36A to GH36K. This family includes enzymes from GH36A-B and GH36D-K and from GH27.	6.88973e-172
NZ_LR699010.1\|WP_111525660.1\|821953_824533_+\|selenium-dependent-xanthine-dehydrogenase	gnl\|CDD\|132354	TIGR03311, Se_dep_XDH, selenium-dependent xanthine dehydrogenase. Members of this protein resemble conventional xanthine dehydrogenase enzymes, which depend on molybdenum cofactor - molybdopterin bound to molybdate with two sulfur atoms as ligands. But all members of this family occur in species that contain markers for the biosynthesis of enzymes with a selenium-containing form of molybdenum cofactor. The member of this family from Enterococcus faecalis has been shown to act as a xanthine dehydrogenenase, and its activity if dependent on SelD (selenophosphate synthase), selenium, and molybdenum. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_LR699010.1\|WP_111525651.1\|837504_839175_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_LR699010.1\|WP_111525657.1\|830275_830926_+\|lipolytic-enzyme,-G-D-S-L	gnl\|CDD\|238877	cd01839, SGNH_arylesterase_like, SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	1.49595e-65
NZ_LR699010.1\|WP_111525655.1\|831842_832628_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|223422	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism].	4.42566e-88
NZ_LR699010.1\|WP_111525652.1\|834546_837483_+\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.03577e-161
NZ_LR699010.1\|WP_111525656.1\|830922_831834_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.22301e-32

>NZ_LR699010.1|WP_111525659.1|824784_827121_+|MMPL-family-transporter
MFEKIASFIVNKRKAFLVFFILATVFGVFSSSWVKVSEKLSDYLPQTSETKQGLDIMEESFTTFGTAKVMVYNVDYDRALEVSKEMEEIKGVSRVDFYDKTDDDYENKDIEDYYKDFSALYTISFDDVEDSKLVQEAIVKVRELVSPYDNVVYTTIDKDDAKNLNEDMKVIFVLVIIIIIAVLLFTSQTYMEIMIFMLTFGVAIVLNIGTNFIFGRISFVTKAVGVVLQLALAIDYAIILFHRFMEERKEHKPKHALIKALAKAIPEISSSSLTTMAGMVALMTMQFQIGMDLGQVLLKSIIFSMLAVFAFMPALIMMFEKQIEKSMHQNFVPNIESIGMGIIKLKRIILPLFVVLIAGGIILSNKTGYIFDVNSIESDKKTEYLDAKERIEEQFGKSNIMAIVIPKEDYLREAALLNEVSTIQGVKSVTGLANIEVGNNGEYVLTDSLNPRELAEVADVDVDLVKAAYRFYALKNEQYGAFMNSIDSYKIPIINMVDFLYEQIEDGGLDIDEDTISDIEDIHKSITDARKQLESEKYSRILLIWDKPLEGKDTFESIDTVRNIAVKYYDEAYVVGDSSSDYDISKSFGGDNLRISIITALLVGVILLFTFQNAALPFILVLTIQGSIWINFSLPYLTGENMFFLSYLIVSSIQMGATIDYAIVITSRYLALREEISDRDTVISRTLNEAFPTIITSGSIMAASGFVIGNITSNPTISSLGKTLGKGVVISMLMVMVVLPVLLYTFDFIIDKTSFSRKINEEENKREDEEENSIITEP
>NZ_LR699010.1|WP_111525660.1|821953_824533_+|selenium-dependent-xanthine-dehydrogenase
MYSFTVNGKLVETEKEVSLLRFLRDDLKLKSIKDGCSQGACGTCTIIIDGKATRACVMTTKRAEGMNIVSVEGLSDFEKEAFVYAFGSKGAVQCGFCIPGMVMSGKALIDRNPNPTENDIKEAIKGNVCRCTGYKKIIEGIDLAAQILRGDKKIDEELEKGDDFGVGSNAFRIDVRDKVLGIGEYVDDMELKDMLHVSAVRTKYPRARVLDIDFSEALALEGVVAVYTAEDVPNNKVGHIQQDWDVMIAKGDVTRCMGDAICLVVAESEEILKKAKALVKVEYEVLEPVRNITEAMAEGAGKVHPNGNLCQSRHVKRGDAKEAIANSKYTITETFDTPFTEHAFLEPECAIALPYKDGVKIYSTDQSVFDTRKEVAIMFGWDPSKVVVENKLVGGGFGGKEDVSVQHIAALCAYKLGRTVKAKFSRDESLAFHPKRHAMHGTFTLGCDENGIFTGLDCDIYFDTGAYASLCGPVLERACTHAVGPYCYQNHDIRGFGYYTNNPPAGAFRGFGVCQSEFALESIIDLLAEKVGISPWEIRYRNAIEPGKVLPNGQIADCSTALKETLEAVKEAYEANYPNVGLACAMKNAGVGVGLPDTGRAKLVVNDGVIEIYCGASDIGQGCATIFIQMAAETLNLPKSKFKNMGCNSELDPDSGTTSGSRQTLISGEAIRRVSLELKKDLDAAGGDLNKLNGKDYYAEYFEPTDKLGADVPFPKSHVAYGFATHLVVLDEDGKVKKVYAAHDSGKVVNPISIQGQIEGGVLMSLGYALTEDFKLQDCVPKSKYGTLGLMRATDIPEIEAIYVEKEELLGVAYGSKGIGEIATIPTAPAVQNAYYKRDGKLRPKLPMDDTYYTNKKKK
>NZ_LR699010.1|WP_111525661.1|820848_821646_+|helix-turn-helix-domain-containing-protein
MKDTKFLLDCQREYSSRKYLITGISLQEKEKGKHISYDTTHSAFIYTLEGEAEIYFNDKSFTATPNVVVHGAKNQKISFDIRSNEPFVHLNIYYDPEMPWHGYSDIMNSVYEISNFRQEVSIELLSKLKASVERSSFDDQVHNNMIAQQLILSSFGYSMINKEILQIEKAVELMEKSYNKNLRLEDLADIAGMNKAHFSYTFNKIYHIRPIDYLIRLRLRKAVNLLLSGMSVTETAINVGYRDPLYFSRLYKKYFGIPPSQTLKK
>NZ_LR699010.1|WP_111525662.1|819673_820708_-|iron-ABC-transporter-permease
MSKTKKDFKFIILLTVLFIALLLSVLIGISLGAVRISLKDTFNILLNSVSGTQNIDDLSKSTIAIVLNMRVPRVIMGIFVGAGLAICGTIMQTTANNPISEPYILGISAGATFGATFFIILGLKSLTGIGAFSGSIISTAVVLFIASIGKKITTTSLILSGAVVNALFSAFSNFIISIGANSDSMMTIKFWTMGSLASASWEDTELLIAVIVISFIFFFSQYRVLNAMLMGDEVAVTLGINLHKYRFIYMIFISMITGILVSKCGIIGFVGLITPHISRILVGTDHKKILPLSTLLGSLFILWSDILARCLIDKAELPIGIFTSLVGGPFFIYIVVKNQRGGQR
>NZ_LR699010.1|WP_111525663.1|818917_819673_-|ABC-transporter-ATP-binding-protein
MDLKCTDISYSIKDKIILNNVSIGISGNKFYSILGPNGCGKTTLLKTIYRILKPSSGIILLNNKNIEHIRLKDSAKEMAVVAQFNEINFDCNVKDMVMLGRTPHIGFMQTERQKDYDIVEDALRKVGMLDKSERSYLSLSGGEKQRVALARAIAQNPSLLLLDEPTNHLDIKYKIEILQIIKDLNINVLAVLHDIQLACKYSDHIYLMKGGEVRYEGSPKSTITNKSMKDVYDIDCKISWADDNQALIEYI
>NZ_LR699010.1|WP_111525664.1|817848_818901_-|ABC-transporter-substrate-binding-protein
MKKIFNIAIGTFISLALIGCASTTDNSSANSTLAQTTVAESTSLAESSTADEKKSSETVYPVSITTYDADGKEITQVFEKSPERIITNNLSSTEILIDLGLQDKIVGMLNPDNEITDDYAAAISAIPHIGDKKSVSKEVVLSNNPDIIIGRNMMFSDKSLGTIDSWNENGIPVYTQKSSVSNMKQSLENVIEDIRNIGIIFNVQEKANTYADELEKKVSAVVTSDNNNSGELKNALIMCAYNDSTFGAYKSALQESILNTLGYTNVATGTSDLTLENLVTMAPEVIIYVTSDRNKEMDTNAVELMKNNSVLSDVPAIANDKIMTISYDEFMDYGASSIKALEDINTFLNK
>NZ_LR699010.1|WP_111525665.1|817193_817847_-|alpha/beta-hydrolase
MFKTELNLPKNYDKTKSYPLILLNDGEIFRLNALKDKAIIIGLKAVNRLDAFTPYPAKNIRPGIPDFGGSADKYHRLVFETFLPEVLSEYNIDHERIVYGGYSLGGLAAVYSLSTVDIPGIVFSLCGSFWYPNFIKYCKDTDFKNKKASVYLLNGKNEGDKHNNILENAPKIATDLHSIIKEKIMDVTSVFDNYGHHENLESRYSNLCIWLSEKLKV
>NZ_LR699010.1|WP_162902593.1|815295_817011_+|IS1182-family-transposase
MTQKINFSFYELSLPDDDPVYTLKKVMEDLDFSGLLANCSDKGRTGYNPIMMYAVITYANMRGIRSIDRIVDLCERDIAFIWLTQGRKPKRDAFYEFKSKKLTSDILDDLNYQFMRRLQKEGFVTLKELFIDGTKIEANANRYTFVWRGSINYHLAGLLDSIDKLYSDYNSFLQDNGFGEKYELGNAQMFVIDGIDRVRDIIEKNRKRKITKHKKLSNNRIIEIDNCSPIEILKLQKNLMTIADGEGIVFVNGKGKRKPKLQQFYEELEHCGQRLMHYKECFEIMGKDRNSYSKTDLEATFMRMKEDHMLNGQLKPAYNVQIAVENYFIVHSYVSNDRTDYNTLIPVLEKHKEAFGEVLEEVTADSGYCSEKNLLYLKENKIDSYIKLQDHEKRKTRAYSKDIGKYYNMKTMVFEDEQVYICHDGRELRHINTEKKEQNGYTQTYEVYGCSDCSGCEHKSKCLYKYNPDKDIDKNKVMKINEVWEELREKSHANIQSEKGILKRQIRSIQTEGHFGDIKENEDFRRFNYRTSDKVYKEFMLFAIGRNINKYHRFLYAKLKKFEGKLQEKTA
>NZ_LR699010.1|WP_119808251.1|813848_815237_+|ISNCY-family-transposase
MDEQRKYDVIKGLVDHPDTANKDRAALILGCTKRHINRMIQGYIKYGKAFFIHGNRGKKPATTICPDIRSQVLDLYRTKYYEANFEHYTELLKKHEGISISSSSVMSILESEYILSPKATKAKRRRIKQTLRAKKEAATSKRELSQIQANLVAVEDAHSRRPRCAYFGELLQMDATPYEWVPGQIWHLHLAIDDASGVVTGAWFDTQETLNGYYHVFEQILTDYGIPYKFLTDKRTVFTYKKKGALSDDKDTYTQFAYACKQLGTQLESSSVPQAKGRIERLNQTLQSRLPIEFRLAGVTDIHKANEFIYHYIKEFNEKFALPLYGIKSVFETQPSKEKINLTLAVLTERTVDAGHAIQFEKKFYKMIDNKGLQTHYRKGTKVMLIKAFDKSMFACVNDKDIYALEEIPAHEHKSKDLDADYKQPKPRKPYIPPMNHPWRLDAFNKFAHSQPHRIEEDIKSA
>NZ_LR699010.1|WP_111525459.1|811329_813510_+|alpha-galactosidase
MSIKLNGNLITLSTKNTSYQMKIDDLGYLFHTWYGERIEDSDDMSYRISSIDRGFSGNPYETMDRSYSLDVYPQEYPTFGSGDYRADCIQVINPDGTNIVELKYDSYEIKKGKYDLPGLPAFFWNEEEGESLKVNLIDKVSGVRVELLYGVLEKYDIITRAVKIVNTSVNELKIEKALSACIDMVDGDFDLIHFHGKHAMEREFERSPLLHGKMVLESKRGTSSHQQNPFAILAKKDATETFGECVGFAFVYSGSFIIEAEIDQVNQTRLVVGLHPEQFEYILNAGEELVLPEVAFTYSNAGFEKMTHSFHDAVRQNLQQGKFVHTHRPILINNWEATYFDFNADKIFDIASKAKSLGIELLVMDDGWFGERYDDARGLGDWYVNEEKLGSSLKELVDRINAIDMKFGIWFEPEMINEDTRLYREHPDFMIRVPNRKGVKGREQFILDFTRKDVRDYIKDMMVKILDNANIEYIKWDMNRSLSAVYSAKLPVKNMGEFHYRYVLGLYDLLGELTKKYPNIMFEGCSGGGGRYDLGMLYYHPQIWLSDDTDAIERLKIQYGSSFAYPIGSAGAHVSASPNHQTTRKTPFETRATVAMAGTFGYELDLNKVSEKEQEQVKSQVKDYIKYDELIHEGDYYRITSPYDKSRVTAWQVLSKDKKFGLLSAVVQAVEANESNIYIYPRGLESEAYYEIAGEKRRGKVWMKGGVLIPRIKEEYESFRFEIKRV
>NZ_LR699010.1|WP_111525657.1|830275_830926_+|lipolytic-enzyme,-G-D-S-L
MKKRVVIFGDSNTWGYDAVTGGRFNEEIRWPMVAAKILGNEYRILEEGLCGRTTCLEDPFNEGLSGLTYILPCLQTHSPLDMLVVMLGTNDCKQRFSLTAANIALGMRRLVKKAMEAEVWRDNPNILVIAPGPILKECELSEVGKNMGVCSDKSYEIAKEYELIAKELGVGFFDSSKCVEMNDIDFMHLTADSHIALAKEVSVIIKNTLENKELKA
>NZ_LR699010.1|WP_111525656.1|830922_831834_+|LysR-family-transcriptional-regulator
MTLTQLKYAIEVANAGSINKAAGNLFITQPSLSSAIAELESEIGIKLFSRNNRGIFLTPAGNEFVGYARQVVEQFDLIEAKYISNQKLKKKFSVSMQHYTFAVSAFVNLVKQFGMDEYEFAVHETKTYDVINDVKTFKSEIGILYLNDFNKNILTKLFKDSNVIFTPLMKCSIYVYLYKKHPLANKSKIKMEELMDYPCLSFDQGEYNSFYFAEEVLSTYEYHKLIKANDRATLLNLMVGLNGYTLCSGIICEELNGDEYMAVKLDSDEKMTIGYIIRKDITMSELGKKYLEEMSKFQDKVLE
>NZ_LR699010.1|WP_111525655.1|831842_832628_+|pyrroline-5-carboxylate-reductase
MRLGVIGFGNMGSAIAKGFVSKKAMDITNIGVFDTYDKTRENAHREGFSIYNDEIELIKHSDAVLIAVKPIHAKVLFEKIAKDIEDKLIVSIVAGLESTTIKSWIGCDKRVLRIMPNTPAIVGEGVFALDSDSNARDDEKKTLESMFSAIGLVEWVEERLFPVVTGLSGGGPAYVAMFIEALADAGVLHGLKRDVAIKMATKTVLGSAAQILETGIHPAVLKDMVCSPAGTTIEGVKALEDYSFRAGVIEAVSAATLKSKK
>NZ_LR699010.1|WP_111525654.1|832674_833028_-|hypothetical-protein
MLKLKLFSIAAVAMLAFTACGSSAPKADASSAVESAASEASSAMESAASEASSGVEAGKDEASSAVESAASEASSALESGMSEAASVMESAGVDASSLANDAANMASSAAEAATKGN
>NZ_LR699010.1|WP_111525653.1|833215_834379_+|NAD(P)H-hydrate-epimerase
MIRFEKIDENTKNLEEIKQLYQDAFPFEERVPFYIMVLVGNDRGVEFLSIYDDDIWLGFIHTLVGDELSYIFYFAIENSLRQSGYGSRILKEYKKMHPRLSLAIEPIEESDNIRQRKRRLEFYKNNGFEILDTKVVEMGVEFELMGAKGMEIKESDYKKLVKKFFDSFSQKKVLSVKEMRDADRYTIENFIDSKELMYRAGEAIFYVGDWNIGDKVLIVAGSGNNAGDGYVVADLLNIEEIDVEILLIKDKFSEDGKYYFDICRQKGIKYSILDEHMDYKILLDKFNSYDYILDCIYGTGFIGEVKEPVYSLIKAINDSQASVVSADINSGMNGDTGESNICVDSDLTVSIGFLKKGLITSEASKHIGELVNMDIGIIIEMDKNQAE
>NZ_LR699010.1|WP_111525652.1|834546_837483_+|DNA-translocase-FtsK
MASRKQTRKSNSRSKANKKIDNNGQMDFLNSEILMIALFCVSLVLFLSHFGLMGILGKYLKIFQLGLFGVLGYAVPMFVFIGGAFLLSNLGSSVAKIKFIGVVLAILTIDTLISLIGIPSLKQFGIIRFYTEGWYGGFIGGILGLIISSILGKIGAIIFFIALFIISIVILTGKSFVSVVKAGGQKTISRAKSDMAKAIEQRKQKKQQIVYEEDDDDVFEEIDIDKNSEGYIEELLEYDKRSNRGRIDLGAIDFSKRKLKHVVDLPENKKNDPIGGLFEGKNNKDFGKTVTDKSVVDTNYQSVEEEVAVPQESVIINKRSDTFYGNIKRGNDESGFENDIDEDMLRRANEILARKDEIDIYEQPISTIRITDDDSHDDFIKAEEKSDYSRDSIEFIKDYDDDELENDYNKYDKSESYIEEPTYSAAIQSKNEDIQETQAVSNTLVSNDGERTLVTAGGKVIVSDTSALQKKMEEQRANSPQGKIRNEIAKNVQRPYTYPSTYLLKKNTNDNESLSDSEYRNTAITLQETLASFDVNVTVEDISVGPSVTLYELKPEQGVKVSKVLSLANDIKLALAASDIRIEAPIPGKSAIGIEVPNKQKQTVYLRELFESRAFRNGTESIGFAVGKDISGKVIVSDIAKMPHVLIAGATGSGKSVCINTLIMSIIYKYSPEDVKLIMVDPKVVELSVYNGIPHLLIPVVTEPKKAASALNWAVAEMGERYKKFAATGVRDLTAYNKRIDEARKRGDIEGLPEKLPKIVIIIDELADLMMVANNEVEDAIVRLAQLARACGIHLVIATQRPSVNVITGIIKANIPSRIAFAVSSGIDSRTILDSNGAEKLLGKGDMLFAPYGASNPIRVQGAFVSDEEVSAVVDFLKNQGMQTRYDEDTIKHIEESEKTSNGGNEVSDRDELFEAAGRYIIEKDRASIGNLQRNFKIGFNRAARIMDQLASAGVVGDEAGTKRREILMNMDEFLDVL
>NZ_LR699010.1|WP_111525651.1|837504_839175_+|formate--tetrahydrofolate-ligase
MLTDIEIARSIKMKNIADVAGEYGISADDLEMYGKYKAKLSEEYLKAHENGKKGKLVLVTAINPTPAGEGKTTTLVGLGQAFKEMGKNAVIALREPSLGPCFGVKGGAAGGGYAQVVPMDELNLHFTGDFHAITSANNLLAAMLDNHIQHGNLLGIDTSAIIHKRCIDMNDRVLRNIVVGLGNKTDGVVREDHFVISVASEIMAILCLSKDMDDLKERLSNIIVAYNFKGDPVFARDLRAVGAMAALLKDAIKPNIVQTLNHSLALVHGGPFANIAHGCNSIRATKIAMGMADIALTEAGFGADLGAEKFFDIKCRQAGFAPDCVVIVATVRAIKYNGGVAKEDLSNENLEALKKGIVNLEKHIENIKLFGVPVVVTLNNFISDTKAEIEFIREFCESRNCEFAISKVWEEGGKGGIELAQKVLYTLENKESKFIPLYPDDMGLEDKLYTIATKIYGAKNVTYSPAAKKALDRAKALGFDKFPVCVAKNQYSLSDDPKKLGRPQDFDINVREVYVNAGAGFVVAITGNIMTMPGLPKVPAAEAVDVDENGNIVGLF
>NZ_LR699010.1|WP_111525650.1|839217_840705_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MKLIGNAKELDIEILSGELIDDFSDLVFNTKKIVKDCLFVCIKGARFDTHDVIDEIVEQGAKAVIVEKNIKRDDICVIKVADTRVALARLSAAFFSHPANKMKIIGITGTKGKTTSSHMLKKLLEQNAKVGLIGTNGITIGNTHRATLNTTPESYELHKTFKECLDAGCKYVVMEVSSQAVKMKRIDGIRFDTGIFTNISPDHIGPDEHKDFDEYLMYKSLFFKQCDRTIVNIEDEHSDFVLKQSTSVEKYTFGKGGDFEAKNVEYISNKDFLGTKIDINCSNDVVDKYSIAKEVKDIYVGIPGEFNVSNAISSLAAAIICGVKADNLKLALKDSRVNGRMEVAYTSHDFNVVIDYAHNAISTESLIYTLRHYNPKRLVIVFGSGGNRSKDRRYSMGEICGKLADFSIVTADNSRYEKTEDIIADIISKLEPTGGKYITIPDRREAIYYSIENAKQGDLIAIIGKGHEDYQEINGVRTHFLDREVVDECLEKMNR
>NZ_LR699010.1|WP_111525649.1|840701_842081_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MKKISLKELADATGGEIISGNEKAIFSNIVIDSRQVDKNSLFVPIVGEKNDAHKFLDSVYEMGCRVAISSKRDIFLREDFNIVLVDDTTKALQSLGKYIRNKLTLPLVGVTGSVGKTTTREMVALALSDLKVFKTPNNFNSQVGVPITLSRINDEEIGVIELGMSQFGEMEKIAEIVKSDCALVTNIGTAHIENLHTRENIRSEKFHIMDGMKEGSVVFLNADNDLLENPPKREGIIYKYFSAKGNTDCDFYATDIVFENAIPKFTAHIGENTVRVNLHVFGEHQISNALVALAVADHYKLSIESAAKHLEEFRGFAHRQELIKLKGLTIIDDTYNASPDSMKASISILEGFKANRKIAILADMKELGADERKLHREIGDFINENVKPDAVFTVGELAKEILLNIDPYVFTKSFDDNDSLEKFISEYFKDGDVCLLKGSNSMKLFDVVEKIKKYEKFIC
>NZ_LR699010.1|WP_111525648.1|842061_844293_+|primosomal-protein-N'
MKNLFADIIISNTNVDRPFTYIIPQSLGDSVSLGCPVLIELRRKVKKGYVINIRENTDLDISKLKPIIAVSERELSTDENLLQLAIWLKHRYGVSFAKAISTVMPVKSKAEEKLNNEIFLNIELDRIDSLKEELIKLRKTAWARLLEELKTKQSLPQSYVNKELKITSTVIRRMVEEGYISVGMKIKKNNPLQPVLRSLGIEKFTEIVKSKEYVLNEEQEIAINTFKSDFDNNKRFSYLLHGITGSGKTLVFINMIKYVIEKGFKAIVLIPEISLTYQTVFRMAEHFGDRVAIINSKLSKNERYYQFDRIKNDDADVIIGPRSAIFAPIKKLGLIVIDEEHDSAYKNENVPTFNVRDVAEKLAEITNASLLLASATPTPETYNRAVNGEIKLLKLKTRAKNTALPKVSIVDMRDELKRGNRSIFSEKLRTLIEDRLKKHEQVMLFMNRRGYSSFVSCRSCGEAIKCKHCDVSMTLHNTNRLVCHYCGYSIELPHICPNCGSRYIANFGTGTQKLEAMTREEFPDARVIRMDTDSTSKKNSVNDMIRSFAKGDADILIGTQMIVKGHDFSNVTLVGIMAADTSLYVSNYNSAQRTFELLTQAAGRAGRAKDGEAVIQTYKPENYAIVAAAAQDYKKYFENEIAYRKMVGYPPECHMLTVMFSSKRDMELNKCANEIVKKIKAISEFKKTVVIGPTEPSISRVKDYYRKLVYIKNVKYDILLDIQEKIEENLSLYKNVGAVYDFN

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Crispr_ID: NZ_LR699010_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_5

1537755-1538541

TypeIII

Consensus_repeat	Method
GTAAGTACCTTACCTATAAGGAATGGAAAC	PILER-CR
GTAAGTACCTTACCTATAAGGAATGGAAAC	CRISPRCasFinder
GTAAGTACCTTACCTATAAGGAATGGAAAC	CRT

11 spacers

cas2,cas1,csm3gr7,csx19,cas10

The CRISPR arrays of NZ_LR699010_5

>merge|NZ_LR699010|5|1537755-1538541|PILER-CR,CRISPRCasFinder,CRT
GTAAGTACCTTACCTATAAGGAATGGAAACAATCCAAACCACCTATTAAGGATCACAGCAATAACAGGGTAAGTACCTTACCTATAAGGAATGGAAACAAGCTTGTCCAACCATTGAAGTCTATATTCATATTGGCGTAAGTACCTTACCTATAAGGAATGGAAACATATAGCTAAAATATTTTGAATAATACTAGCTATAAGTAAGTACCTTACCTATAAGGAATGGAAACTCAGCTACCGGAAACAACTTCCTTGCTTCTTCTTGATTGTAAGTACCTTACCTATAAGGAATGGAAACTATTCCAGAACCTGCGAGTAGCTCGTCCCAAGTGATCGTGAGTACCTTACCTATAAGGAATGGAAACTATATGATATTGTCGGAGTTATTATCACGGACATAATAACTCGTGAGTACCTTACCTATAAGGAATGGAAACAGATTTACTTTAGCCATTTCCTTATCGGTCTTTTGAAGCCCCTTTCCGTAAGTACCTTACCTATAAGGAATGGAAACAGAGCTAGTAACAAATATCTGCATTATCGGCACTTTTATTGTAAGTACCTTACCTATAAGGAATGGAAACAGTCACTATGTTGCTGAGGCTTTCATTCATCCCTAGTAAGTACATTACCTATAAGGAATGGAAACAAAAATCATCTTTTCCCTTAACTGCTGGAAATTTCTCTTCGTAAGTACCTTACCTATAAGGAATGGAAACATAAGTATCATGGTGAATACATTTGACGGTGTAATCGTAAGTACCTTACCTATAAGGAACACTCCC

>NZ_LR699010|5|1|1537755-1538475|PILER-CR
GTAAGTACCTTACCTATAAGGAATGGAAAC	AATCCAAACCACCTATTAAGGATCACAGCAATAACAGG
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAGCTTGTCCAACCATTGAAGTCTATATTCATATTGGC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATATAGCTAAAATATTTTGAATAATACTAGCTATAA
GTAAGTACCTTACCTATAAGGAATGGAAAC	TCAGCTACCGGAAACAACTTCCTTGCTTCTTCTTGATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TATTCCAGAACCTGCGAGTAGCTCGTCCCAAGTGATC
GTGAGTACCTTACCTATAAGGAATGGAAAC	TATATGATATTGTCGGAGTTATTATCACGGACATAATAACTC
GTGAGTACCTTACCTATAAGGAATGGAAAC	AGATTTACTTTAGCCATTTCCTTATCGGTCTTTTGAAGCCCCTTTCC
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGAGCTAGTAACAAATATCTGCATTATCGGCACTTTTATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTCACTATGTTGCTGAGGCTTTCATTCATCCCTA
GTAAGTACATTACCTATAAGGAATGGAAAC	AAAAATCATCTTTTCCCTTAACTGCTGGAAATTTCTCTTC
GTAAGTACCTTACCTATAAGGAATGGAAAC

>NZ_LR699010|5|5|1537755-1538541|CRISPRCasFinder
GTAAGTACCTTACCTATAAGGAATGGAAAC	AATCCAAACCACCTATTAAGGATCACAGCAATAACAGG
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAGCTTGTCCAACCATTGAAGTCTATATTCATATTGGC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATATAGCTAAAATATTTTGAATAATACTAGCTATAA
GTAAGTACCTTACCTATAAGGAATGGAAAC	TCAGCTACCGGAAACAACTTCCTTGCTTCTTCTTGATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TATTCCAGAACCTGCGAGTAGCTCGTCCCAAGTGATC
GTGAGTACCTTACCTATAAGGAATGGAAAC	TATATGATATTGTCGGAGTTATTATCACGGACATAATAACTC
GTGAGTACCTTACCTATAAGGAATGGAAAC	AGATTTACTTTAGCCATTTCCTTATCGGTCTTTTGAAGCCCCTTTCC
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGAGCTAGTAACAAATATCTGCATTATCGGCACTTTTATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTCACTATGTTGCTGAGGCTTTCATTCATCCCTA
GTAAGTACATTACCTATAAGGAATGGAAAC	AAAAATCATCTTTTCCCTTAACTGCTGGAAATTTCTCTTC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATAAGTATCATGGTGAATACATTTGACGGTGTAATC
GTAAGTACCTTACCTATAAGGAACACTCCC

>NZ_LR699010|5|1|1537755-1538541|CRT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AATCCAAACCACCTATTAAGGATCACAGCAATAACAGG
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAGCTTGTCCAACCATTGAAGTCTATATTCATATTGGC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATATAGCTAAAATATTTTGAATAATACTAGCTATAA
GTAAGTACCTTACCTATAAGGAATGGAAAC	TCAGCTACCGGAAACAACTTCCTTGCTTCTTCTTGATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TATTCCAGAACCTGCGAGTAGCTCGTCCCAAGTGATC
GTGAGTACCTTACCTATAAGGAATGGAAAC	TATATGATATTGTCGGAGTTATTATCACGGACATAATAACTC
GTGAGTACCTTACCTATAAGGAATGGAAAC	AGATTTACTTTAGCCATTTCCTTATCGGTCTTTTGAAGCCCCTTTCC
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGAGCTAGTAACAAATATCTGCATTATCGGCACTTTTATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTCACTATGTTGCTGAGGCTTTCATTCATCCCTA
GTAAGTACATTACCTATAAGGAATGGAAAC	AAAAATCATCTTTTCCCTTAACTGCTGGAAATTTCTCTTC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATAAGTATCATGGTGAATACATTTGACGGTGTAATC
GTAAGTACCTTACCTATAAGGAACACTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111524234.1\|1525610_1526678_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_LR699010.1\|WP_111524247.1\|1540907_1542413_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111526036.1\|1547877_1548186_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_LR699010.1\|WP_111524243.1\|1538874_1540794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_LR699010.1\|WP_111524238.1\|1532261_1533992_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR699010.1\|WP_111524240.1\|1535818_1536658_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_LR699010.1\|WP_111526031.1\|1555215_1556952_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NZ_LR699010.1\|WP_111524241.1\|1536681_1537359_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_LR699010.1\|WP_111526033.1\|1551268_1552786_-\|CRISPR-associated-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NZ_LR699010.1\|WP_111526134.1\|1544091_1545666_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_LR699010.1\|WP_111524239.1\|1533981_1535718_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR699010.1\|WP_111524233.1\|1524733_1525534_-\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_LR699010.1\|WP_111524237.1\|1530381_1532247_-\|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_LR699010.1\|WP_172621796.1\|1529672_1530413_-\|DUF2344-domain-containing-protein	unknown	unknown	gnl\|CDD\|378393
NZ_LR699010.1\|WP_111526035.1\|1548739_1550749_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NZ_LR699010.1\|WP_111524235.1\|1526690_1528292_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_LR699010.1\|WP_111526034.1\|1550751_1551288_-\|hypothetical-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NZ_LR699010.1\|WP_111524242.1\|1538605_1538866_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_LR699010.1\|WP_111524236.1\|1528687_1529698_-\|ribonuclease-E/G	unknown	unknown	gnl\|CDD\|378414
NZ_LR699010.1\|WP_111526032.1\|1552799_1555268_-\|CRISPR-associated-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111524234.1\|1525610_1526678_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	8.99831e-89
NZ_LR699010.1\|WP_111526035.1\|1548739_1550749_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	7.03794e-45
NZ_LR699010.1\|WP_111526036.1\|1547877_1548186_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	1.50141e-13
NZ_LR699010.1\|WP_111524243.1\|1538874_1540794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	3.92021e-102
NZ_LR699010.1\|WP_111524238.1\|1532261_1533992_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.10941e-173
NZ_LR699010.1\|WP_111524240.1\|1535818_1536658_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	5.97993e-100
NZ_LR699010.1\|WP_111524241.1\|1536681_1537359_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	2.93632e-139
NZ_LR699010.1\|WP_111526033.1\|1551268_1552786_-\|CRISPR-associated-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.27528e-12
NZ_LR699010.1\|WP_111526134.1\|1544091_1545666_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.9554e-40
NZ_LR699010.1\|WP_111524239.1\|1533981_1535718_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.11244e-143
NZ_LR699010.1\|WP_111524233.1\|1524733_1525534_-\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	3.8161e-07
NZ_LR699010.1\|WP_111524237.1\|1530381_1532247_-\|TIGR03960-family-B12-binding-radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0
NZ_LR699010.1\|WP_172621796.1\|1529672_1530413_-\|DUF2344-domain-containing-protein	gnl\|CDD\|378393	pfam10105, DUF2344, Uncharacterized protein conserved in bacteria (DUF2344). This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function. This domain is distantly related to tRNA pseudouridine synthases, suggesting this family may carry out a function related to RNA modification. But this family appears to lack the catalytic aspartate found in pseudouridine synthases.	1.46615e-71
NZ_LR699010.1\|WP_111524235.1\|1526690_1528292_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	6.05865e-108
NZ_LR699010.1\|WP_111526034.1\|1550751_1551288_-\|hypothetical-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	1.96776e-11
NZ_LR699010.1\|WP_111524242.1\|1538605_1538866_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.4007e-25
NZ_LR699010.1\|WP_111524236.1\|1528687_1529698_-\|ribonuclease-E/G	gnl\|CDD\|378414	pfam10150, RNase_E_G, Ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs.	1.18933e-62
NZ_LR699010.1\|WP_111526032.1\|1552799_1555268_-\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	3.93303e-09

>NZ_LR699010.1|WP_111524241.1|1536681_1537359_-|uracil-DNA-glycosylase
MSELTGEWKEVLSAEFRKPYYRSLYEFVKEEYSKYIIYPPADKIFEALHLTALSDIKVVILGQDPYHGENQAHGLSFSVPKSQKKIPPSLVNIYKELQDDVGTYIPNNGNLLKWSKQGVLLLNTILTVRAHKAFSHQGKGWENFTDAIIKIINDTDRPIVFMLWGSAAISKSKMLNNPKHLVLKSVHPSPLSAYRGFFGCKHFSKANEFLLKNNISPIDWQIENV
>NZ_LR699010.1|WP_111524240.1|1535818_1536658_-|undecaprenyl-diphosphate-phosphatase
MNILEILKVIIIGIVEGITEWLPISSTGHIVLVEQLFQLNASKEFKAMFEVVIQLGAILAVVVMYFRKLNPFSKSKSPKKRRLAMELWTKIIIACLPAAMLGLLIDDWVEEHLLNGFVIAMALIIYGVLFIMIENSNKKREYSIRNVNAIDYQTALSIGFFQVLALVPGTSRSGATIIGGMILGATRSVSAEFSFFLSIPIMFGASFLKLAKFGLHYTVAEVVYLLLGMFVSFIVSIFSINFLLNWIKKNDFKFFGYYRIGLGIIVLVWYFVSTLMKMK
>NZ_LR699010.1|WP_111524239.1|1533981_1535718_-|ABC-transporter-ATP-binding-protein
MLRLIRYLKEYKLESVLAPLFKLLEAAFELLVPLVIARIIDIGIVNKDSKYVINMGILLVSLAMIGLTSAIIAQYFSAKAATGFGTKLRDDLFAHILSFSHAETDVLGRDTLVTRVTNDSDQVQNGVNRFFRLVLRSPFIVAGAFIMSFHIDAKMSLIAFTVIVILAIIVAFIMSKSIELYRNVQRKLDKVLGKTGENLTGIRVIRAFSKESSEILEYNNATKDLYNDQVLVGNISALLNPLTYVVVNLGIVAILQTGAIQVNIGNLTTGQVVALINYMSQILVELVKFANLIILLSKASACAKRINEIFDIKSSISGGSDELNLKDFDGEIIAFENVGFVYPKSKEEALSDITFSVKKGETIGIIGGTGSGKSSLINLIPRFYDISRGSIKLAGRDIKEYSLESIRKNVALVEQKSRLFRGNIRNNLLWGDAKASDKALYEAADIAQAMDVINSKEGKLDSEVAMYGNNFSGGQKQRLSIARSLVKKAGILILDDSSSALDYATDSRLRKAIREIENVTTLIVSQRIVSIKNSDRIIVLDDGRIVGIGTHDELLENSPIYKEIYNSQIMAKEDSDEE
>NZ_LR699010.1|WP_111524238.1|1532261_1533992_-|ABC-transporter-ATP-binding-protein
MKNNKNTLKRILNLLSPYKFRMAVSLILAVVIVLTTLYLPILTGRAVDTIVGKGNVDFERLIKIIFIMIIMMCVTAVAQWCMTAINNGVAYHMVRDIRNQAFNKIMRLPISYVDSTSHGEIINRIINDVDQFSEGLLMGFAQFFTGILTIVLTIIILFTINVYVTLVVLLVTPLAMLVAGFIAKNTYKHFKSQSEKRARMTGIVDEMIAGLSTVKNFTMENQIENEFKESDEELRVASQNAIFISAIAFPATRFVNSLVYAGVAISGALLVITGNMSVGQLTSVLSYATQYTKPFNEISGVVTELQNSFACAARVFSLIDEEEILPDKDVNNVIKDVEGNVEVSHVYFSYDKSKKLIEDLNLDVKAGQRIAIVGPTGSGKSTIINLLMRFYDIDSGSIKIEGKDIGDITRKSIRENFGMVLQETWLKNASIRDNIAFGKPDATFEEIEAAAKEAYADSFIKRLPDGYDTIVTEGGENLSAGQRQLLCIARIMLVLPPMLILDEATSSIDTMTEARISKAFDKMMMGRTSFVVAHRLSTIKNADMILVLKDGHIIEQGNHNELMDMKGFYYELNNAV
>NZ_LR699010.1|WP_111524237.1|1530381_1532247_-|TIGR03960-family-B12-binding-radical-SAM-protein
MRKLALSDDILLSVDKPARYIGGELNSRDKSLENVDIRFVMCFPDVYEIGMSHIGMQIIYDMLNRREDTFCERLFSPWVDLDKVLREKNIPLFSLESQENVKDADILGITLQYEMCYTNILQILELSQIPMYAKDRGEEYPIVIGGGPCSYNPEPLAPFFDIFYIGEGEVVYDALLDLYKECKKNKLSKHEFLRKAAKLDGMYVPEFYDVSYKEDGTIESFTPKHEDVPSVVHRVVVQNMDEVSYLSKPVVPFIKVTQDRVVLEIMRGCIRGCRFCQAGNVYRPQRERSLEYLINYAKTMLDITGAEEISLSSLSSSDYSQLDKLLNFLLEYTKERGINISLPSLRIDAFSLDVMSKVQDVKKSSLTFAPEAGTQRLRDVINKGITEEDILNGSMEAFKGGWNKVKLYFMLGLPTETEEDIKGIPQLCEKIAEHYYSIPKDQRIGKVSITASSSFFVPKPFTPFQWAKMETEEEYLRRAHLVKDTFREQLNQKSMKYQYHDAEVTLLEGLMARGDRKIADVIVNAYKNGAMYDSWSDQFNMEYWLMAYEQTCIDPTFYTLRERDIDEIFPWDFIDAGVTKNFLIREWKTAHEDKISPNCRQQCLGCGARKYNGGVCLESAN
>NZ_LR699010.1|WP_172621796.1|1529672_1530413_-|DUF2344-domain-containing-protein
MEVFVLKVRIKFEKTEQMRFIGHLDLMRYFQKAMRRADIPIKYSEGFSPHQIMSFGAPLSMGVSGLGEYMDIELKEGSHISSSEAIKRLNDMMCTGMKVTKFLQIPDNSKPAMALMDTADFKAEFKTEVLETDIREAIDKLMSKESILLTKVSKKKKKNQFGKFVEVETTSVVDIKSFIYKLDAIENGVFMHLSQGSTNNIKPAAVMDFLYEEGLPQAKRNEYYLYRLDMYTEEGKALDEYGCEII
>NZ_LR699010.1|WP_111524236.1|1528687_1529698_-|ribonuclease-E/G
MSTDVKLSKLLITRYRNKLFAISYNDNKPNEIEYIEDTSLLGSIHIGKVKKIAKNINAAFVEIEFNSERQMVYFDMAELKHLIFADEKEHNCLHEGDDILIKISKLPIKNKLPGATANLLGSEVPEKILARKNYIKAPGMLYAGSEDYIDVIKDRLKYAEFDIVTDIREIYEGIVSFFEENHKEMLNRVRFYEDSMISLNKLYSIDTLFSESLNKKAWLKDGGYLYIESTEALTVVDVNTGKNVQKKDAGIIKLNTNLEAIKETARQLRLRNISGIIIIDLINTTDKSEIDLIYHTMKEYLKEDRLNTVAIDITKLCLFEITRRKRKPSLEEIMKR
>NZ_LR699010.1|WP_111524235.1|1526690_1528292_-|MBL-fold-metallo-hydrolase
MKLEFIGADHEVTGSCHYVEVGEKKFLVDYGMEQGVNVYENAPLPVPPAQIDYLFVTHAHIDHTGMIPQLVARGFKGEIYASTATMELCKIMLRDCAHIQAEELKWKNRKAERAGRQKEVAIYEMADVEAAIKLFRGVNYSEKIDVDENISIRFIDAGHILGSASIEVWLREDNESRKIVFSGDIGNFNKPLIRDPEYIKDADYVLMESTYGDRFHEDGADHVSDLAKIIEETLDRGGNVVIPAFAVGRTQELLYFMRQIKQNNLVKNRRDFPVYVDSPLAIEATNVFKDNLLDCYDEETKALVESGINPIAFPNLKMTVSSDESMAINLDKMPKVIISASGMCDAGRIRHHLKHNLWRSECSVVFAGYQAFGTLGRTLQDNVSEVRLFGENISVHAHIETLKSISSHADKNGLIKWISAFEEKPKEVFIVHGDDRVCESFSNELKTKYGINSSAPFSGSVFDLITGEWIKQTKGVAVVASKDTREQESSVYLRLLGAGERLLRIIKENKHGANKDLAKFADQINDLSKKWEI
>NZ_LR699010.1|WP_111524234.1|1525610_1526678_-|FAD:protein-FMN-transferase
MKKFNKKTVIVVAAVIIGLFVLAIAGKNTSMKSVANNFDLTLDKKNSEEPLTDTTFALDTFITVSIYEGGNEDILKGSMEFIRNYEMVFSATNPLAELYKLNHREKGAMSVEVSDDLAFLIDRALYYCKISGGSFDITTEPLKELWDFNAEEPELPSDESIKEQLPKVDYMRVAVDGNTIKFTSDDTRIDLGAIAKGYIADKTKEYLIEMGVNSAIINLGGNVLCVGKKPSGENFTIGLQKPYADRNETVALLTVDDESVVSSGVYERHFVIDGKNYHHILNPKTGYPYDNGLVEVSILTKSSTDADALSTTCFSLGVEEGVKLLDSIPDTYGYFILSDYSIIYSEGAKEQLAEP
>NZ_LR699010.1|WP_111524233.1|1524733_1525534_-|SseB-family-protein
MVRREVLASIPKAVNLYMILSDFTRLPYVYCDDESFDDVAFFFDEKEKADKKSEELLANKQQNSVVELNQEGILRTFTCLVVAGVNAIKYNYQGEDFIVQLDEIIKVSDFSELPPEKRPIENRSLQLTMLYFGQEIRANIGNPNIPELRELEEEMMVNILKARFIVPVREVEVDGETQMHMLMLKINNEGGNVIPIFTDNIEFDKMPGDENVKKTIIDTKNLINFPLPPGCDGYLINPMGVSMPVNTGVLRNLRNMEIVSKDKKEE
>NZ_LR699010.1|WP_111524242.1|1538605_1538866_+|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNAKRDPKVMKTLRKYLTHEQRSVFEGLITPGRLKHLKEELKRIVDVSEDCINIYSLETLRYSKKESIGKQVYHGNIL
>NZ_LR699010.1|WP_111524243.1|1538874_1540794_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKLTMADIFIPEQIEEALSHLSTKKDTCGIDGLYLSELRDDWNINGARYLSLLRDGKYKPGIVQIYEIINYTGKRRSISSFNSVDRLILRCLATSLEKYYDSIFSACSFAFRPGLGVDKAVASFVSNLNKGLDKVVVIDIKHYFDSIPIDRLEMILKRIIDDKILISLFHKFLYCRISEENIIKTKNKGILQGSPISPFLGNLYLSLLDTQLESMQIPFCRYCDDISMFFSSFEEAKEGYTKVIDILKNDLEMDINSQKSGIYEGIKQNYLGYSFTKNKKQNQILAIKKKKAPPQIYQHWSTTAIQRIDRNYHIINNGILNRKDFTILFENDRGKKYLPVEATESLNVYSSVIFSSDFFKYIGGKKISVNIFDKYGELAGTFSPPESLHGGLTMLKQAAIYLDEDKRKLIARKLEIASLHNMRSNLKYYERHHSHENLKNGIKAFSEWITEMNEATDVPMLLTIEARARQLYYSLFHEIIDDPAFRFTKRTRRPPRDPLNALISFGNMFLYNRIATEIQKTSLDIRIGFVHATNRRSQSLNLDIADLFKPLIVDRAIFTIINRHMIHASEHFEKTEDGGIYLNKEGKQIFINELENKVYQKQTEENQPRTYDTRIREEIHKIFRFVCYDEKYKPFKYN
>NZ_LR699010.1|WP_111524247.1|1540907_1542413_-|hypothetical-protein
MERGDSFQGVGNDGKDITIDDCKSQGESVVRYFLKLMPSDDEVDIVMLCSRKTLEKDEKNGIDNKGNIYSAVSYLIERIDRSPEKGKHKINYKVIKLYKNELPVEHRLQEMDDIDPSIPLMPATKEEEIHFPEDELGAISEAAEFIRYKKLQEKRSFRLYIDTHGGLRDVVLSLSAVISLLSVGESIRPKLISGINMALARIEDQSATFNIFNFFSGINDFLHFGNADILSEYFDMKKDVSYLAGADPIVQKTAKQIVKHMQKISLGAQMSDPKAFLEGLKELGNEFEKNGGSSLKGTTLGIFEKKIKDEYGSLLTNPNILDLIIWCIDHGLIQQALTFIESMLPYYYWDKKLLYFDKEQLKKFDEDAYIAFNRYIGRLRFNQQKSNKELNFFAYHLLENTGEYDVTWARPRNTTLRYYHPEDAAKGEDLEAKSKWINYDNYGNVKMEDFRNKVVPLLQSHRILKIIRNSFNHGNSEYRVSLPKLKMFIINYISDLKKAKK
>NZ_LR699010.1|WP_111526134.1|1544091_1545666_-|IS1182-family-transposase
MKNLPNTYCNSKQGYLPLFFSDCLDLLDPVLTFDRLIGGIDLNKYLTDIPEYITGRRRYNPVNMLKTVLFGFMTSGYCSLRKLEDNCKVNIRFMYLMDNRTPSYRTFGYFINKILKDKIENIFNDINHAIFNEEHVDLQHLYIDGSKFEANANKYTWVWKKATEKFRYKLYEKITAEIDEINAEIAWSGVQITTNTEYVPDYLNEIVEQLVLLWELDTSTFVYGSGKRKSKEQRHYEHLTTFCHKLQEYIQKIEISGTDRNSYSKTDTSATFMRIKTDYMGNDQLLPAYNVQIGVADEYIAVVDVNHYRSDMDCFVPLMEHFKQTYGFYPKYPVADAGYGSYNNYIFCEQNGIEKYMKFPMFKKETKDRKYHEDPFRAVNFRIDEQGVMRCPNDKAFHFLCRKDVRGNQYGRKEELYECEDCSGCPYAKKCKKTDKNRTVRINQELTSMHREVIENLESIHGALLRMNRSIQAEGTFGIMKSDRWYKRIVRRGIHSVKLEVLLVAIGHNLYKYQKKKTRNRTSA
>NZ_LR699010.1|WP_111526036.1|1547877_1548186_-|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MNKNTLIQFRIDHDLKIDAENICNQLGIDLTTVLKMCLKQIIIQKGIPFSVHLPDDGEKYHSDSNVNDSKRQGIDKKSDKDFEIDIRGINEEVESIRKENRI
>NZ_LR699010.1|WP_111526035.1|1548739_1550749_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MPKNENKQNGKDEKNSKIKYKYEISNKKFFINPYTFLKGNKKVNREEKEQEVGNHTGVFVCRIYPKTPLLIPDVFKKKEIVDRKEKNTKNKEIKHFSYPFFRLGDNPVIPGSSIRGPLRSVYEALTDSCYSTARSGQYITARTKSPFLPGLLIKTNGKWELYSATRYLLPIKEYGARPFDNGKIFKYKEVIDNHGGSVYFEGDEHTENIRGRSILQYRVLHTSIVKKPGYELGYYYIGEYINGKKYESIFKKVDLKSNNSKLIENCFEQLKEIKKKYMDEKINQKFVSSREPGNKDHHGGYKQVDLKKFEEANDAVLPIWYKKNTNKDKKVEYYFSLANIGRFRYETSMDKILGKQDDGRMPCHDVKKLCKTCSLFGMVGDEEGFGSHIRITDAIFDGNIDEAIKEYKLTELRTPHPSYLPFYADVKDYSLGYDAAECNIKGRKFYRHFIPDYKGLGKLDPQKIDSKMEGIGEGSFRFKVYFENLTQEQLDELATLLCLGENNKDGNLCFKLGHGKPLGFGSAKIVIESLEERIFNHYIIDKNKGDKNNYEYKKKIYSDLKKWNIHKESGSEEEISKIQESIKAMRSILDITVFTNLDANTKVAYPYVLDKRKDKSQKLAINDLASSKWFSENLKLGGDSPKYSLKWSSTDIDKQKLPVMELMEDEKKK
>NZ_LR699010.1|WP_111526034.1|1550751_1551288_-|hypothetical-protein
MENTKIEKNDKKTILDKIKNVFSNCGDNTFFVAQYTDKFDIGIWNENTIENTNKLLELRVFDKDKEWKLFRSDIGKDFSYRFQGEEDNKGEGVDYFDEVQLLDIDTSKECKKSELMKTTAGGEYNLPKDISDLDRAAISVRHYFGVDNESGQAFIRDYRLVDFESAKKRDYSKNLKGV
>NZ_LR699010.1|WP_111526033.1|1551268_1552786_-|CRISPR-associated-protein
MGKIIKKHYLKITFQLESPLCIGSGRNDITDQDILRDARGIPYIPGSAVAGVIREACDEAIDESGLKYYFGYAHINKGKNDESVESSIIESKIIFYDATLVDDGKNKKRELLYRISQRDGVALNEYKSAKKQAKFDWEILEGDCKFQTFIEISEEESDDEIAAEEMLINIAKVWKEADIRFGAKTTRGFGKICNVDIIRRSFELVKNSDNGKGNIEDWLEFDAFDNKSWEDNDSYEKISSDFKKYNEWKLKEKKKLSLRLKLQGGISIRRYSTQCSEEESSPDQEQMTTIKFNNKKSSDQDQVESQKSIEEIAIIPGTTWAGAIGHRMEELIEGSKVTKFKRSEKDIQSYHYFGAANDKDKEKSNIYFGESRLTGGEFKIMSRNAIDRFLGSTAEGALFTEKIYIGGETTLDISFGDPYNTAVVYSDDFIKALAATLTDLHEGYLAVGGATSVGRGVFSITHINGDEFDTVKQEDGENHPVFDKLYNTLKTLLEKKEARDGKHKN
>NZ_LR699010.1|WP_111526032.1|1552799_1555268_-|CRISPR-associated-protein
MIWDMEKLKKGRKKMQNKKQGEIHITLYSDLCSGNGYSYYGTIDSEAEHDEFGLPFIPARRLKGCLRECAELLSDSGLWGKSNDESGDTEKYTDPLNYLFGVSADDGTKGIRIENAYISEYEQIKKDLKLIKENKQIQKYISPDEVLDIFSDVKAQTKMENGVADDNSLRFTRIIHQFSPFNKENRLEFIAKVEYPEGQEDKLKQICKALRHIGMNRNRGLGCVKCEFKAEDEAANIKDENLIAENEADNVKCKIQIAKDMVINENSDQKLNITIFFENLGPMIISGDDKNTTLNYIPGKAVLGALAGTYLSEAGHSADDEEFVHLFLNGDTIYSDFNISDGVHIFAPAPSFLNKMKKSKKYVNSLRYSEKQVSDNKDYDTDNKDYDPANGNQPKKLKGKYIYLEINKDNRKVFEHEPKQRVIYHHRRGNDALLYSQTALKEGQIFGGNIICNTKDYKLLLGLLKNTNFSFGKSKTAQYGKCRIIEGLVDELFKKDTKFQVKKDELIYVSLASKGIFLDECGYTQESKKVYQIIGEQLGLLNKEADISKKIGEIQGEEKDYPFCSIQSAMIYGYSGVWNLRKPPIAGIESGSTFIYRAVEDKDIDKYYVGERNLEGFGKVNLYREDLLPYELNIEVKNSNTENNDTKTDNIENIDNTLKNLSEGVREILKQSLYKVLYQNMLERILTEMANDSFKLRMSPSTIGRVNLMVKETLPKNEKEANDKYKDFVKRVASIKRDTEREEALKIVGRFLGSVPSKEKEDADLDIKKMIGESLDQDSNSENVRLLCKLTDKKEVNAHISSLWGELMLELLANQKYLKKFN
>NZ_LR699010.1|WP_111526031.1|1555215_1556952_-|hypothetical-protein
MEEKGYVLCMYDIRGKQEFIYRSSKLKEIVGASLIIRDLFEDYLYDAAKTCRDNINKESKVKEEYKDEDAIFRYDPNKEKLDKFSFKQFEERMDGNQYIGEIVYDGGGNFLLLYKDENAMKKTTEIFTKKILKEIGTLKVVATYIGDISKDNYHSDDLKNPGDYERLYQKHRLRESTALYTLPYGSLPIVQTEPTSSLPLTYMYDNAPADSSASEKKYVKYSTETNAKLKKYWKEASNPGYEMGETVLDNIVAETKGEDSMLAIFYIDGNAMGAKVQACLNGKKNYDDCVNLLREFSKKIQKTFIDDRKVDMLKTDETKSSDKKNYKSRILIGAGDEMTIICKADESYETIKEYLSKIPSPYSSCAGAAIFHSHTPFADAYRIAEQCCEDTCKNYMKKNGLTLANLMDFEYCQGGIGFSLKDIREENGDDNNSRPWLVESEVEEKVSYHYKPVKNKNLPSWEKGKTEEERSNKEKINKLKDLLSLQKVEDFHTNLSLLGRTNIKGLAIPVSLSETALRTELRRIIAHMSKDKKEKMGFKSDADIVEYFVENKKLLKDLVRMYDMGYGKAKEGEEENAK

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Crispr_ID: NZ_LR699010_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_6

1543201-1543930

TypeIII

Consensus_repeat	Method
GTAAGTACCTTACCTATAAGGAATGGAAAC	CRISPRCasFinder
GTAAGTACCTTACCTATAAGGAATGGAAAC	PILER-CR

9 spacers

cas1,cas2,csm3gr7,csx19,cas10,csx20,csx1

The CRISPR arrays of NZ_LR699010_6

>merge|NZ_LR699010|6|1543201-1543930|CRISPRCasFinder,PILER-CR
GTAAGTACCTTACCTATAAGGAATGGAAACTTAATAGACCGCCTTCTATTTCTGTCTTGACTGTGACATACTTTTCTGTAAGTACCTTACCTATAAGGAATGGAAACTTATCAGCACGTTCGTTTAATTCAACACCGGTGTGAGCTTGAACTTTTATGAAATGTAAGTACCTTACCTATAAGGAATGGAAACTGGTAGCGTTACACACCTGTCCAACTGTTACGGCGGTAAGTACCTTACCTATAAGGAATGGAAACAATATTTTTACACAGACTGTTCATATAATCTTGGGTGGTAAGTACCTTACCTATAAGGAATGGAAACGATTTCTCAATAATTATTATGAAATTATGAATTTTCCGTAAGAAATAAGGTAAGTACCTTACCTATAAGGAATGGAAACATAATCTTCACTTTTCTTAGTCTTAGGCATAATTACCGTAAGTACCTTACCTATAAGGAATGGAAACATTTTGGAATAAGTTGCGTCTGAGCATAAACTTTTATATATATCCTGAACAAGTAAGTACCTTACCTATAAGGAATGGAAACAAAACCTATGCACTTTAGTTCATAATATCACCCGAAGCTTGCTGCTGGTAAGTACCTTACCTATAAGGAATGGAAACATTACTGATTTTTCATATTGAAGTTCAGCGAGATTACAGATAATTTTTACTGTATTTTCATCCATAGAAATGTAAGTACCTTACCTATAAGGAATGGAAAC

>NZ_LR699010|6|6|1543201-1543930|CRISPRCasFinder
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTAATAGACCGCCTTCTATTTCTGTCTTGACTGTGACATACTTTTCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTATCAGCACGTTCGTTTAATTCAACACCGGTGTGAGCTTGAACTTTTATGAAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TGGTAGCGTTACACACCTGTCCAACTGTTACGGCG
GTAAGTACCTTACCTATAAGGAATGGAAAC	AATATTTTTACACAGACTGTTCATATAATCTTGGGTG
GTAAGTACCTTACCTATAAGGAATGGAAAC	GATTTCTCAATAATTATTATGAAATTATGAATTTTCCGTAAGAAATAAG
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATAATCTTCACTTTTCTTAGTCTTAGGCATAATTACC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATTTTGGAATAAGTTGCGTCTGAGCATAAACTTTTATATATATCCTGAACAA
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAAACCTATGCACTTTAGTTCATAATATCACCCGAAGCTTGCTGCTG
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATTACTGATTTTTCATATTGAAGTTCAGCGAGATTACAGATAATTTTTACTGTATTTTCATCCATAGAAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC

>NZ_LR699010|6|2|1543363-1543752|PILER-CR
GTAAGTACCTTACCTATAAGGAATGGAAAC	TGGTAGCGTTACACACCTGTCCAACTGTTACGGCG
GTAAGTACCTTACCTATAAGGAATGGAAAC	AATATTTTTACACAGACTGTTCATATAATCTTGGGTG
GTAAGTACCTTACCTATAAGGAATGGAAAC	GATTTCTCAATAATTATTATGAAATTATGAATTTTCCGTAAGAAATAAG
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATAATCTTCACTTTTCTTAGTCTTAGGCATAATTACC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATTTTGGAATAAGTTGCGTCTGAGCATAAACTTTTATATATATCCTGAACAA
GTAAGTACCTTACCTATAAGGAATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111524247.1\|1540907_1542413_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111524243.1\|1538874_1540794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_LR699010.1\|WP_111524238.1\|1532261_1533992_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR699010.1\|WP_111524240.1\|1535818_1536658_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_LR699010.1\|WP_111526031.1\|1555215_1556952_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NZ_LR699010.1\|WP_111524241.1\|1536681_1537359_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_LR699010.1\|WP_111526033.1\|1551268_1552786_-\|CRISPR-associated-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NZ_LR699010.1\|WP_111526134.1\|1544091_1545666_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_LR699010.1\|WP_111524239.1\|1533981_1535718_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR699010.1\|WP_111526035.1\|1548739_1550749_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NZ_LR699010.1\|WP_111524237.1\|1530381_1532247_-\|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_LR699010.1\|WP_172621796.1\|1529672_1530413_-\|DUF2344-domain-containing-protein	unknown	unknown	gnl\|CDD\|378393
NZ_LR699010.1\|WP_111526102.1\|1561250_1562756_-\|hypothetical-protein	csx1	pfam09455_csx1_CAS-III	unknown
NZ_LR699010.1\|WP_119808267.1\|1559308_1561063_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_LR699010.1\|WP_111526030.1\|1557006_1557363_-\|hypothetical-protein	csx20	cls000118_csx20_CAS-I:CAS-III	unknown
NZ_LR699010.1\|WP_111526036.1\|1547877_1548186_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_LR699010.1\|WP_111526034.1\|1550751_1551288_-\|hypothetical-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NZ_LR699010.1\|WP_111524242.1\|1538605_1538866_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_LR699010.1\|WP_111524236.1\|1528687_1529698_-\|ribonuclease-E/G	unknown	unknown	gnl\|CDD\|378414
NZ_LR699010.1\|WP_111526032.1\|1552799_1555268_-\|CRISPR-associated-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111524243.1\|1538874_1540794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	3.92021e-102
NZ_LR699010.1\|WP_111524238.1\|1532261_1533992_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.10941e-173
NZ_LR699010.1\|WP_111524240.1\|1535818_1536658_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	5.97993e-100
NZ_LR699010.1\|WP_111524239.1\|1533981_1535718_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.11244e-143
NZ_LR699010.1\|WP_111524241.1\|1536681_1537359_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	2.93632e-139
NZ_LR699010.1\|WP_111526033.1\|1551268_1552786_-\|CRISPR-associated-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.27528e-12
NZ_LR699010.1\|WP_111526134.1\|1544091_1545666_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.9554e-40
NZ_LR699010.1\|WP_111526036.1\|1547877_1548186_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	1.50141e-13
NZ_LR699010.1\|WP_111526035.1\|1548739_1550749_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	7.03794e-45
NZ_LR699010.1\|WP_111524237.1\|1530381_1532247_-\|TIGR03960-family-B12-binding-radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0
NZ_LR699010.1\|WP_172621796.1\|1529672_1530413_-\|DUF2344-domain-containing-protein	gnl\|CDD\|378393	pfam10105, DUF2344, Uncharacterized protein conserved in bacteria (DUF2344). This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function. This domain is distantly related to tRNA pseudouridine synthases, suggesting this family may carry out a function related to RNA modification. But this family appears to lack the catalytic aspartate found in pseudouridine synthases.	1.46615e-71
NZ_LR699010.1\|WP_119808267.1\|1559308_1561063_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	9.84216e-27
NZ_LR699010.1\|WP_111526034.1\|1550751_1551288_-\|hypothetical-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	1.96776e-11
NZ_LR699010.1\|WP_111524242.1\|1538605_1538866_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.4007e-25
NZ_LR699010.1\|WP_111524236.1\|1528687_1529698_-\|ribonuclease-E/G	gnl\|CDD\|378414	pfam10150, RNase_E_G, Ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs.	1.18933e-62
NZ_LR699010.1\|WP_111526032.1\|1552799_1555268_-\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	3.93303e-09

>NZ_LR699010.1|WP_111524247.1|1540907_1542413_-|hypothetical-protein
MERGDSFQGVGNDGKDITIDDCKSQGESVVRYFLKLMPSDDEVDIVMLCSRKTLEKDEKNGIDNKGNIYSAVSYLIERIDRSPEKGKHKINYKVIKLYKNELPVEHRLQEMDDIDPSIPLMPATKEEEIHFPEDELGAISEAAEFIRYKKLQEKRSFRLYIDTHGGLRDVVLSLSAVISLLSVGESIRPKLISGINMALARIEDQSATFNIFNFFSGINDFLHFGNADILSEYFDMKKDVSYLAGADPIVQKTAKQIVKHMQKISLGAQMSDPKAFLEGLKELGNEFEKNGGSSLKGTTLGIFEKKIKDEYGSLLTNPNILDLIIWCIDHGLIQQALTFIESMLPYYYWDKKLLYFDKEQLKKFDEDAYIAFNRYIGRLRFNQQKSNKELNFFAYHLLENTGEYDVTWARPRNTTLRYYHPEDAAKGEDLEAKSKWINYDNYGNVKMEDFRNKVVPLLQSHRILKIIRNSFNHGNSEYRVSLPKLKMFIINYISDLKKAKK
>NZ_LR699010.1|WP_111524243.1|1538874_1540794_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKLTMADIFIPEQIEEALSHLSTKKDTCGIDGLYLSELRDDWNINGARYLSLLRDGKYKPGIVQIYEIINYTGKRRSISSFNSVDRLILRCLATSLEKYYDSIFSACSFAFRPGLGVDKAVASFVSNLNKGLDKVVVIDIKHYFDSIPIDRLEMILKRIIDDKILISLFHKFLYCRISEENIIKTKNKGILQGSPISPFLGNLYLSLLDTQLESMQIPFCRYCDDISMFFSSFEEAKEGYTKVIDILKNDLEMDINSQKSGIYEGIKQNYLGYSFTKNKKQNQILAIKKKKAPPQIYQHWSTTAIQRIDRNYHIINNGILNRKDFTILFENDRGKKYLPVEATESLNVYSSVIFSSDFFKYIGGKKISVNIFDKYGELAGTFSPPESLHGGLTMLKQAAIYLDEDKRKLIARKLEIASLHNMRSNLKYYERHHSHENLKNGIKAFSEWITEMNEATDVPMLLTIEARARQLYYSLFHEIIDDPAFRFTKRTRRPPRDPLNALISFGNMFLYNRIATEIQKTSLDIRIGFVHATNRRSQSLNLDIADLFKPLIVDRAIFTIINRHMIHASEHFEKTEDGGIYLNKEGKQIFINELENKVYQKQTEENQPRTYDTRIREEIHKIFRFVCYDEKYKPFKYN
>NZ_LR699010.1|WP_111524242.1|1538605_1538866_+|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNAKRDPKVMKTLRKYLTHEQRSVFEGLITPGRLKHLKEELKRIVDVSEDCINIYSLETLRYSKKESIGKQVYHGNIL
>NZ_LR699010.1|WP_111524241.1|1536681_1537359_-|uracil-DNA-glycosylase
MSELTGEWKEVLSAEFRKPYYRSLYEFVKEEYSKYIIYPPADKIFEALHLTALSDIKVVILGQDPYHGENQAHGLSFSVPKSQKKIPPSLVNIYKELQDDVGTYIPNNGNLLKWSKQGVLLLNTILTVRAHKAFSHQGKGWENFTDAIIKIINDTDRPIVFMLWGSAAISKSKMLNNPKHLVLKSVHPSPLSAYRGFFGCKHFSKANEFLLKNNISPIDWQIENV
>NZ_LR699010.1|WP_111524240.1|1535818_1536658_-|undecaprenyl-diphosphate-phosphatase
MNILEILKVIIIGIVEGITEWLPISSTGHIVLVEQLFQLNASKEFKAMFEVVIQLGAILAVVVMYFRKLNPFSKSKSPKKRRLAMELWTKIIIACLPAAMLGLLIDDWVEEHLLNGFVIAMALIIYGVLFIMIENSNKKREYSIRNVNAIDYQTALSIGFFQVLALVPGTSRSGATIIGGMILGATRSVSAEFSFFLSIPIMFGASFLKLAKFGLHYTVAEVVYLLLGMFVSFIVSIFSINFLLNWIKKNDFKFFGYYRIGLGIIVLVWYFVSTLMKMK
>NZ_LR699010.1|WP_111524239.1|1533981_1535718_-|ABC-transporter-ATP-binding-protein
MLRLIRYLKEYKLESVLAPLFKLLEAAFELLVPLVIARIIDIGIVNKDSKYVINMGILLVSLAMIGLTSAIIAQYFSAKAATGFGTKLRDDLFAHILSFSHAETDVLGRDTLVTRVTNDSDQVQNGVNRFFRLVLRSPFIVAGAFIMSFHIDAKMSLIAFTVIVILAIIVAFIMSKSIELYRNVQRKLDKVLGKTGENLTGIRVIRAFSKESSEILEYNNATKDLYNDQVLVGNISALLNPLTYVVVNLGIVAILQTGAIQVNIGNLTTGQVVALINYMSQILVELVKFANLIILLSKASACAKRINEIFDIKSSISGGSDELNLKDFDGEIIAFENVGFVYPKSKEEALSDITFSVKKGETIGIIGGTGSGKSSLINLIPRFYDISRGSIKLAGRDIKEYSLESIRKNVALVEQKSRLFRGNIRNNLLWGDAKASDKALYEAADIAQAMDVINSKEGKLDSEVAMYGNNFSGGQKQRLSIARSLVKKAGILILDDSSSALDYATDSRLRKAIREIENVTTLIVSQRIVSIKNSDRIIVLDDGRIVGIGTHDELLENSPIYKEIYNSQIMAKEDSDEE
>NZ_LR699010.1|WP_111524238.1|1532261_1533992_-|ABC-transporter-ATP-binding-protein
MKNNKNTLKRILNLLSPYKFRMAVSLILAVVIVLTTLYLPILTGRAVDTIVGKGNVDFERLIKIIFIMIIMMCVTAVAQWCMTAINNGVAYHMVRDIRNQAFNKIMRLPISYVDSTSHGEIINRIINDVDQFSEGLLMGFAQFFTGILTIVLTIIILFTINVYVTLVVLLVTPLAMLVAGFIAKNTYKHFKSQSEKRARMTGIVDEMIAGLSTVKNFTMENQIENEFKESDEELRVASQNAIFISAIAFPATRFVNSLVYAGVAISGALLVITGNMSVGQLTSVLSYATQYTKPFNEISGVVTELQNSFACAARVFSLIDEEEILPDKDVNNVIKDVEGNVEVSHVYFSYDKSKKLIEDLNLDVKAGQRIAIVGPTGSGKSTIINLLMRFYDIDSGSIKIEGKDIGDITRKSIRENFGMVLQETWLKNASIRDNIAFGKPDATFEEIEAAAKEAYADSFIKRLPDGYDTIVTEGGENLSAGQRQLLCIARIMLVLPPMLILDEATSSIDTMTEARISKAFDKMMMGRTSFVVAHRLSTIKNADMILVLKDGHIIEQGNHNELMDMKGFYYELNNAV
>NZ_LR699010.1|WP_111524237.1|1530381_1532247_-|TIGR03960-family-B12-binding-radical-SAM-protein
MRKLALSDDILLSVDKPARYIGGELNSRDKSLENVDIRFVMCFPDVYEIGMSHIGMQIIYDMLNRREDTFCERLFSPWVDLDKVLREKNIPLFSLESQENVKDADILGITLQYEMCYTNILQILELSQIPMYAKDRGEEYPIVIGGGPCSYNPEPLAPFFDIFYIGEGEVVYDALLDLYKECKKNKLSKHEFLRKAAKLDGMYVPEFYDVSYKEDGTIESFTPKHEDVPSVVHRVVVQNMDEVSYLSKPVVPFIKVTQDRVVLEIMRGCIRGCRFCQAGNVYRPQRERSLEYLINYAKTMLDITGAEEISLSSLSSSDYSQLDKLLNFLLEYTKERGINISLPSLRIDAFSLDVMSKVQDVKKSSLTFAPEAGTQRLRDVINKGITEEDILNGSMEAFKGGWNKVKLYFMLGLPTETEEDIKGIPQLCEKIAEHYYSIPKDQRIGKVSITASSSFFVPKPFTPFQWAKMETEEEYLRRAHLVKDTFREQLNQKSMKYQYHDAEVTLLEGLMARGDRKIADVIVNAYKNGAMYDSWSDQFNMEYWLMAYEQTCIDPTFYTLRERDIDEIFPWDFIDAGVTKNFLIREWKTAHEDKISPNCRQQCLGCGARKYNGGVCLESAN
>NZ_LR699010.1|WP_172621796.1|1529672_1530413_-|DUF2344-domain-containing-protein
MEVFVLKVRIKFEKTEQMRFIGHLDLMRYFQKAMRRADIPIKYSEGFSPHQIMSFGAPLSMGVSGLGEYMDIELKEGSHISSSEAIKRLNDMMCTGMKVTKFLQIPDNSKPAMALMDTADFKAEFKTEVLETDIREAIDKLMSKESILLTKVSKKKKKNQFGKFVEVETTSVVDIKSFIYKLDAIENGVFMHLSQGSTNNIKPAAVMDFLYEEGLPQAKRNEYYLYRLDMYTEEGKALDEYGCEII
>NZ_LR699010.1|WP_111524236.1|1528687_1529698_-|ribonuclease-E/G
MSTDVKLSKLLITRYRNKLFAISYNDNKPNEIEYIEDTSLLGSIHIGKVKKIAKNINAAFVEIEFNSERQMVYFDMAELKHLIFADEKEHNCLHEGDDILIKISKLPIKNKLPGATANLLGSEVPEKILARKNYIKAPGMLYAGSEDYIDVIKDRLKYAEFDIVTDIREIYEGIVSFFEENHKEMLNRVRFYEDSMISLNKLYSIDTLFSESLNKKAWLKDGGYLYIESTEALTVVDVNTGKNVQKKDAGIIKLNTNLEAIKETARQLRLRNISGIIIIDLINTTDKSEIDLIYHTMKEYLKEDRLNTVAIDITKLCLFEITRRKRKPSLEEIMKR
>NZ_LR699010.1|WP_111526134.1|1544091_1545666_-|IS1182-family-transposase
MKNLPNTYCNSKQGYLPLFFSDCLDLLDPVLTFDRLIGGIDLNKYLTDIPEYITGRRRYNPVNMLKTVLFGFMTSGYCSLRKLEDNCKVNIRFMYLMDNRTPSYRTFGYFINKILKDKIENIFNDINHAIFNEEHVDLQHLYIDGSKFEANANKYTWVWKKATEKFRYKLYEKITAEIDEINAEIAWSGVQITTNTEYVPDYLNEIVEQLVLLWELDTSTFVYGSGKRKSKEQRHYEHLTTFCHKLQEYIQKIEISGTDRNSYSKTDTSATFMRIKTDYMGNDQLLPAYNVQIGVADEYIAVVDVNHYRSDMDCFVPLMEHFKQTYGFYPKYPVADAGYGSYNNYIFCEQNGIEKYMKFPMFKKETKDRKYHEDPFRAVNFRIDEQGVMRCPNDKAFHFLCRKDVRGNQYGRKEELYECEDCSGCPYAKKCKKTDKNRTVRINQELTSMHREVIENLESIHGALLRMNRSIQAEGTFGIMKSDRWYKRIVRRGIHSVKLEVLLVAIGHNLYKYQKKKTRNRTSA
>NZ_LR699010.1|WP_111526036.1|1547877_1548186_-|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MNKNTLIQFRIDHDLKIDAENICNQLGIDLTTVLKMCLKQIIIQKGIPFSVHLPDDGEKYHSDSNVNDSKRQGIDKKSDKDFEIDIRGINEEVESIRKENRI
>NZ_LR699010.1|WP_111526035.1|1548739_1550749_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MPKNENKQNGKDEKNSKIKYKYEISNKKFFINPYTFLKGNKKVNREEKEQEVGNHTGVFVCRIYPKTPLLIPDVFKKKEIVDRKEKNTKNKEIKHFSYPFFRLGDNPVIPGSSIRGPLRSVYEALTDSCYSTARSGQYITARTKSPFLPGLLIKTNGKWELYSATRYLLPIKEYGARPFDNGKIFKYKEVIDNHGGSVYFEGDEHTENIRGRSILQYRVLHTSIVKKPGYELGYYYIGEYINGKKYESIFKKVDLKSNNSKLIENCFEQLKEIKKKYMDEKINQKFVSSREPGNKDHHGGYKQVDLKKFEEANDAVLPIWYKKNTNKDKKVEYYFSLANIGRFRYETSMDKILGKQDDGRMPCHDVKKLCKTCSLFGMVGDEEGFGSHIRITDAIFDGNIDEAIKEYKLTELRTPHPSYLPFYADVKDYSLGYDAAECNIKGRKFYRHFIPDYKGLGKLDPQKIDSKMEGIGEGSFRFKVYFENLTQEQLDELATLLCLGENNKDGNLCFKLGHGKPLGFGSAKIVIESLEERIFNHYIIDKNKGDKNNYEYKKKIYSDLKKWNIHKESGSEEEISKIQESIKAMRSILDITVFTNLDANTKVAYPYVLDKRKDKSQKLAINDLASSKWFSENLKLGGDSPKYSLKWSSTDIDKQKLPVMELMEDEKKK
>NZ_LR699010.1|WP_111526034.1|1550751_1551288_-|hypothetical-protein
MENTKIEKNDKKTILDKIKNVFSNCGDNTFFVAQYTDKFDIGIWNENTIENTNKLLELRVFDKDKEWKLFRSDIGKDFSYRFQGEEDNKGEGVDYFDEVQLLDIDTSKECKKSELMKTTAGGEYNLPKDISDLDRAAISVRHYFGVDNESGQAFIRDYRLVDFESAKKRDYSKNLKGV
>NZ_LR699010.1|WP_111526033.1|1551268_1552786_-|CRISPR-associated-protein
MGKIIKKHYLKITFQLESPLCIGSGRNDITDQDILRDARGIPYIPGSAVAGVIREACDEAIDESGLKYYFGYAHINKGKNDESVESSIIESKIIFYDATLVDDGKNKKRELLYRISQRDGVALNEYKSAKKQAKFDWEILEGDCKFQTFIEISEEESDDEIAAEEMLINIAKVWKEADIRFGAKTTRGFGKICNVDIIRRSFELVKNSDNGKGNIEDWLEFDAFDNKSWEDNDSYEKISSDFKKYNEWKLKEKKKLSLRLKLQGGISIRRYSTQCSEEESSPDQEQMTTIKFNNKKSSDQDQVESQKSIEEIAIIPGTTWAGAIGHRMEELIEGSKVTKFKRSEKDIQSYHYFGAANDKDKEKSNIYFGESRLTGGEFKIMSRNAIDRFLGSTAEGALFTEKIYIGGETTLDISFGDPYNTAVVYSDDFIKALAATLTDLHEGYLAVGGATSVGRGVFSITHINGDEFDTVKQEDGENHPVFDKLYNTLKTLLEKKEARDGKHKN
>NZ_LR699010.1|WP_111526032.1|1552799_1555268_-|CRISPR-associated-protein
MIWDMEKLKKGRKKMQNKKQGEIHITLYSDLCSGNGYSYYGTIDSEAEHDEFGLPFIPARRLKGCLRECAELLSDSGLWGKSNDESGDTEKYTDPLNYLFGVSADDGTKGIRIENAYISEYEQIKKDLKLIKENKQIQKYISPDEVLDIFSDVKAQTKMENGVADDNSLRFTRIIHQFSPFNKENRLEFIAKVEYPEGQEDKLKQICKALRHIGMNRNRGLGCVKCEFKAEDEAANIKDENLIAENEADNVKCKIQIAKDMVINENSDQKLNITIFFENLGPMIISGDDKNTTLNYIPGKAVLGALAGTYLSEAGHSADDEEFVHLFLNGDTIYSDFNISDGVHIFAPAPSFLNKMKKSKKYVNSLRYSEKQVSDNKDYDTDNKDYDPANGNQPKKLKGKYIYLEINKDNRKVFEHEPKQRVIYHHRRGNDALLYSQTALKEGQIFGGNIICNTKDYKLLLGLLKNTNFSFGKSKTAQYGKCRIIEGLVDELFKKDTKFQVKKDELIYVSLASKGIFLDECGYTQESKKVYQIIGEQLGLLNKEADISKKIGEIQGEEKDYPFCSIQSAMIYGYSGVWNLRKPPIAGIESGSTFIYRAVEDKDIDKYYVGERNLEGFGKVNLYREDLLPYELNIEVKNSNTENNDTKTDNIENIDNTLKNLSEGVREILKQSLYKVLYQNMLERILTEMANDSFKLRMSPSTIGRVNLMVKETLPKNEKEANDKYKDFVKRVASIKRDTEREEALKIVGRFLGSVPSKEKEDADLDIKKMIGESLDQDSNSENVRLLCKLTDKKEVNAHISSLWGELMLELLANQKYLKKFN
>NZ_LR699010.1|WP_111526031.1|1555215_1556952_-|hypothetical-protein
MEEKGYVLCMYDIRGKQEFIYRSSKLKEIVGASLIIRDLFEDYLYDAAKTCRDNINKESKVKEEYKDEDAIFRYDPNKEKLDKFSFKQFEERMDGNQYIGEIVYDGGGNFLLLYKDENAMKKTTEIFTKKILKEIGTLKVVATYIGDISKDNYHSDDLKNPGDYERLYQKHRLRESTALYTLPYGSLPIVQTEPTSSLPLTYMYDNAPADSSASEKKYVKYSTETNAKLKKYWKEASNPGYEMGETVLDNIVAETKGEDSMLAIFYIDGNAMGAKVQACLNGKKNYDDCVNLLREFSKKIQKTFIDDRKVDMLKTDETKSSDKKNYKSRILIGAGDEMTIICKADESYETIKEYLSKIPSPYSSCAGAAIFHSHTPFADAYRIAEQCCEDTCKNYMKKNGLTLANLMDFEYCQGGIGFSLKDIREENGDDNNSRPWLVESEVEEKVSYHYKPVKNKNLPSWEKGKTEEERSNKEKINKLKDLLSLQKVEDFHTNLSLLGRTNIKGLAIPVSLSETALRTELRRIIAHMSKDKKEKMGFKSDADIVEYFVENKKLLKDLVRMYDMGYGKAKEGEEENAK
>NZ_LR699010.1|WP_111526030.1|1557006_1557363_-|hypothetical-protein
MINFTNHPYEMWDDAQKRAASEFGDIKEIPFPAVDPSATEEDLDNLAEEYREKVLALKDPMILLQGEFTLSFRLVQLLKKDGLKVVAACSERRVHEWRDDDGKYHKEMLFEFVQFRRY
>NZ_LR699010.1|WP_119808267.1|1559308_1561063_-|IS1182-family-transposase
MLTVNYYNDFFEIGQQKINFSFYELSLPDDDPVYTLKKVMEDLDFSGLLANCSDKGRTGYNPIMMYAVITYANMRGIRSIDRIVDLCERDIAFIWLTQGRKPKRDAFYEFKSKKLTSDILDDLNYQFMRRLQKEGFVTLKELFIDGTKIEANANRYTFVWRGSINYHLAGLLDSIDKLYSDYNSFLQDNGFGEKYELGNAQMFVIDGIDRVRDIIEKNRKRKITKHKKLSNNRIIEIDNCSPIEILKLQKNLMTIADGEGIVFVNGKGKRKPKLQQLYEELEHCGQRLMHYKECFEIMGKDRNSYSKTDLEATFMRMKEDHMLNGQLKPAYNVQIAVENYFIVHSYVSNDRTDYNALIPVLEKHKEAFGEVLEEVTADSGYCSEKNLLYLKENKIDSYIKLQDHEKRKTRAYSKDIGKYYNMKTMVFEDEQVYICHDGRELRHINTEKKKQNGYTQTYEVYGCSDCSGCEHKSKCLYKYNPDKDVDKNKVMKINEVWEELREKSHANIQSEKGILKRQTRSIQTEGHFGDIKENEDFRRFNYRSSDKVYKEFMLFAIGRNINKYHRFLYAKLKKFEGKPQEKTA
>NZ_LR699010.1|WP_111526102.1|1561250_1562756_-|hypothetical-protein
MDKGDYFRGIGNDGKDVIINDCRSQGESVVRYFLEIMPSDEEVDIVMLCSRKTLEMDERNGTYKKGNIYSAVSYLKERIERSPEKGKHKINYKIIKLYKNKLPNEHRLQEADDIDPSIPLMPANKEEESFFPEDEIGAISRAVEYIHYKKLQEKKTFKLYIDTHGGLRDIVFSMSAVNSLLYVGEAIRPKLISGINMASARIENQSEKFNVFNFFSGINEFLHFGNADILSEYVDIKSDFSYLTGADPSVQKIAKQIVKDMQKISYGVQMSDPRAFMEGLKELGNEFEKSSESNLKNTPFGILEQKIKDEYGSLLTNPNILDLIIWCVEHGLIQQALTFVESMLPYYYWDKKLLYFDKEQLKRFDEDENMAFNRYISRFRFNQQKTNKEMNFFAYHLLENTGEYEVTWARPRSTTLRYYHPESAAKGEDLEAKSRWIYNDNYGNVKLEDFRNKVLPLLQSHRILKIIRSSFNHGNLEYRISLPKLKRFILNYISELKKAKK

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Crispr_ID: NZ_LR699010_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_7

1545736-1547779

TypeIII

Consensus_repeat	Method
GTAAGTACCTTACCTATAAGGAATGGAAAC	CRT
GTAAGTACCTTACCTATAAGGAATGGAAAC	PILER-CR
GTAAGTACCTTACCTATAAGGAATGGAAAC	CRISPRCasFinder
GTAAGTACCTTACCTATAAGGAATGGAAAC	PILER-CR

28 spacers

cas1,cas2,csm3gr7,csx19,cas10,csx20,csx1

The CRISPR arrays of NZ_LR699010_7

>merge|NZ_LR699010|7|1545736-1547779|CRT,PILER-CR,CRISPRCasFinder,PILER-CR
TATTTCACAGCCCCTATAAGGAATGGAAACCTTAATTTCTAAAACACTTGTTGCCATATTTGCTCCTGTAAGTACCTTACCTATAAGGAATGGAAACAATAATTATTCTTCTTTAGCTGTAGATGTAAAGAGATTGTAAGTACCTTACCTATAAGGAATGGAAACTTGATGGTCTAACACTCATAACTAACACCTCTTATTATTGTAAGTACCTTACCTATAAGGAATGGAAACTAAAAGGCTTAGGGTATTCATTTTTGGAGCTTTCAAAGCTGTAAGTACCTTACCTATAAGGAATGGAAACCTTCTGCCTTAGCGGCATTGGCCGTGATTACGCTCACGATATAATAGTAAGTACCTTACCTATAAGGAATGGAAACCAGGCTTATAAAGGAAAAGTCGATTAGTAACTTCCCAAATGTAAGTACCTTACCTATAAGGAATGGAAACACAAGGAATTCTGCCTTTTCTAAATCATTCTTTTCCTTGTAAGTACCTTACCTATAAGGAATGGAAACGATATTATTGAAGTGATTACTGATAAAATTGGCTCCGGAGTATTGAAACCTGCTAATGTAAGTACCTTACCTATAAGGAATGGAAACTTGTTTGTTAACAAAATTATCATCATTATCATCATCATTATGTAAGTACCTTACCTATAAGGAATGGAAACATTCTCTCATTGTTGTTCTTGAATGCATTGCCTATTACGTAAGTACCTTACCTATAAGGAATGGAAACTATACATTGTCCCATTACTTCCAACTAATTCAAACTTAAACGTAAGTACCTTACCTATAAGGAATGGAAACAAAACCAAGTCTCCTTTCCTACTACATAATCGGATGCAAAATACTGAGTAAGTACCTTACCTATAAGGAATGGAAACCATAGCCGTATACAGAAATAGGTGAGTAGTTGCCGAATGTAAGTACCTTACCTATAAGGAATGGAAACAAAGGGTAACGTTGTACACCTAAGTAACCTTTTACTTTCATGTAAGTACCTTACCTATAAGGAATGGAAACTCTTTGTACTTACTTATAAACTCAAATATGAATTTAAAGTGTAAGTACCTTACCTATAAGGAATGGAAACAGTTGAAAAAGAAAAGATTTACTAGCCTTCCTGACCTGTAAGTACCTTACCTATAAGGAATGGAAACAGTCGTCTTCGGATCCGATGATTCCCTTTTTGAAACTGTAAGTACCTTACCTATAAGGAATGGAAACGCCATCGGTATCGATGATAAGATTGTGACTCCAATAGTCACTGTAAGTACCTTACCTATAAGGAATGGAAACAAGATGATTTTGATATATCTGATGATAAATCTGATGGTAAGTACCTTACCTATAAGGAATGGAAACTTTGTTACCCATTTTGATGCATCACTATATAATTCTTTGTTTTTTTTCGTAAGTACCTTACCTATAAGGAATGGAAACACTATTACATATTCGTTTCTTTTTCATTTTTTTATCTCCTTTAAAAGAGTAAGTACCTTACCTATAAGGAATGGAAACTTATCAATCATTCCATCTTTATCCAAAGCTATCTTAGTAAGTACCTTACCTATAAGGAATGGAAACACGCCCTTTTTATTTCTTTTCATATATCTCTCCTTTGTAAGTACCTTACCTATAAGGAATGGAAACTTTTATGCCTGTAAGATATGTTGAGAATATTGATGCCGCCATTACAATCCAGTAAGTACCTTACCTATAAGGAATGGAAACGAAAATACTTATATACTTTTTGTCGTATCGATTCTATGTCTTCTGTAAGTACCTTACCTATAAGGAATGGAAACAGTTAGGACAAGCTACTGATACAGAGTAGAATTCTCTGTCGTCACTGTAAGTACCTTACCTATAAGGAATGGAAACTAATTATAATAGCTATTATGTTGCTTGGGACTTCATTAATCCCGTAAGTACCTTACCTATAAGGAATGGAAACATTTATAGAGGCTAGTTTCAGATAAGCAAGATCATTCTTAAAAGGCAAAGTAAGTACCTTTCCTATAAGGAATACCTTT

>NZ_LR699010|7|2|1545736-1547779|CRT
TATTTCACAGCCCCTATAAGGAATGGAAAC	CTTAATTTCTAAAACACTTGTTGCCATATTTGCTCCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AATAATTATTCTTCTTTAGCTGTAGATGTAAAGAGATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTGATGGTCTAACACTCATAACTAACACCTCTTATTATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TAAAAGGCTTAGGGTATTCATTTTTGGAGCTTTCAAAGCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	CTTCTGCCTTAGCGGCATTGGCCGTGATTACGCTCACGATATAATA
GTAAGTACCTTACCTATAAGGAATGGAAAC	CAGGCTTATAAAGGAAAAGTCGATTAGTAACTTCCCAAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACAAGGAATTCTGCCTTTTCTAAATCATTCTTTTCCTT
GTAAGTACCTTACCTATAAGGAATGGAAAC	GATATTATTGAAGTGATTACTGATAAAATTGGCTCCGGAGTATTGAAACCTGCTAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTGTTTGTTAACAAAATTATCATCATTATCATCATCATTAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATTCTCTCATTGTTGTTCTTGAATGCATTGCCTATTAC
GTAAGTACCTTACCTATAAGGAATGGAAAC	TATACATTGTCCCATTACTTCCAACTAATTCAAACTTAAAC
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAAACCAAGTCTCCTTTCCTACTACATAATCGGATGCAAAATACTGA
GTAAGTACCTTACCTATAAGGAATGGAAAC	CATAGCCGTATACAGAAATAGGTGAGTAGTTGCCGAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAAGGGTAACGTTGTACACCTAAGTAACCTTTTACTTTCAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TCTTTGTACTTACTTATAAACTCAAATATGAATTTAAAGT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTTGAAAAAGAAAAGATTTACTAGCCTTCCTGACCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTCGTCTTCGGATCCGATGATTCCCTTTTTGAAACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	GCCATCGGTATCGATGATAAGATTGTGACTCCAATAGTCACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAGATGATTTTGATATATCTGATGATAAATCTGATG
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTTGTTACCCATTTTGATGCATCACTATATAATTCTTTGTTTTTTTTC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACTATTACATATTCGTTTCTTTTTCATTTTTTTATCTCCTTTAAAAGA
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTATCAATCATTCCATCTTTATCCAAAGCTATCTTA
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACGCCCTTTTTATTTCTTTTCATATATCTCTCCTTT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTTTATGCCTGTAAGATATGTTGAGAATATTGATGCCGCCATTACAATCCA
GTAAGTACCTTACCTATAAGGAATGGAAAC	GAAAATACTTATATACTTTTTGTCGTATCGATTCTATGTCTTCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTTAGGACAAGCTACTGATACAGAGTAGAATTCTCTGTCGTCACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TAATTATAATAGCTATTATGTTGCTTGGGACTTCATTAATCCC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATTTATAGAGGCTAGTTTCAGATAAGCAAGATCATTCTTAAAAGGCAAA
GTAAGTACCTTTCCTATAAGGAATACCTTT

>NZ_LR699010|7|3|1545803-1546185|PILER-CR
GTAAGTACCTTACCTATAAGGAATGGAAAC	AATAATTATTCTTCTTTAGCTGTAGATGTAAAGAGATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTGATGGTCTAACACTCATAACTAACACCTCTTATTATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TAAAAGGCTTAGGGTATTCATTTTTGGAGCTTTCAAAGCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	CTTCTGCCTTAGCGGCATTGGCCGTGATTACGCTCACGATATAATA
GTAAGTACCTTACCTATAAGGAATGGAAAC	CAGGCTTATAAAGGAAAAGTCGATTAGTAACTTCCCAAAT
GTAAGTACCTTACCTATAAGGAATGGAAACACAAGGAATTCTGCCTTTTCTAAATCATTCTTTTCCTTGTAAGTACCTTACCTATAAGGAATGGAAACGATATTATTGAAGTGATTACTGATAAAATTGGCTCCGGAGTATTGAAACCTGCTAATGTAAGTACCTTACCTATAAGGAATGGAAAC	TTGTTTGTTAACAAAATTATCATCATTATCATCATCATTAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATTCTCTCATTGTTGTTCTTGAATGCATTGCCTATTAC
GTAAGTACCTTACCTATAAGGAATGGAAAC	TATACATTGTCCCATTACTTCCAACTAATTCAAACTTAAAC
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAAACCAAGTCTCCTTTCCTACTACATAATCGGATGCAAAATACTGA
GTAAGTACCTTACCTATAAGGAATGGAAAC	CATAGCCGTATACAGAAATAGGTGAGTAGTTGCCGAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAAGGGTAACGTTGTACACCTAAGTAACCTTTTACTTTCAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TCTTTGTACTTACTTATAAACTCAAATATGAATTTAAAGT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTTGAAAAAGAAAAGATTTACTAGCCTTCCTGACCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTCGTCTTCGGATCCGATGATTCCCTTTTTGAAACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	GCCATCGGTATCGATGATAAGATTGTGACTCCAATAGTCACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAGATGATTTTGATATATCTGATGATAAATCTGATG
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTTGTTACCCATTTTGATGCATCACTATATAATTCTTTGTTTTTTTTC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACTATTACATATTCGTTTCTTTTTCATTTTTTTATCTCCTTTAAAAGA
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTATCAATCATTCCATCTTTATCCAAAGCTATCTTA
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACGCCCTTTTTATTTCTTTTCATATATCTCTCCTTT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTTTATGCCTGTAAGATATGTTGAGAATATTGATGCCGCCATTACAATCCA
GTAAGTACCTTACCTATAAGGAATGGAAAC	GAAAATACTTATATACTTTTTGTCGTATCGATTCTATGTCTTCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTTAGGACAAGCTACTGATACAGAGTAGAATTCTCTGTCGTCACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TAATTATAATAGCTATTATGTTGCTTGGGACTTCATTAATCCC


>NZ_LR699010|7|7|1545803-1547779|CRISPRCasFinder
GTAAGTACCTTACCTATAAGGAATGGAAAC	AATAATTATTCTTCTTTAGCTGTAGATGTAAAGAGATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTGATGGTCTAACACTCATAACTAACACCTCTTATTATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TAAAAGGCTTAGGGTATTCATTTTTGGAGCTTTCAAAGCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	CTTCTGCCTTAGCGGCATTGGCCGTGATTACGCTCACGATATAATA
GTAAGTACCTTACCTATAAGGAATGGAAAC	CAGGCTTATAAAGGAAAAGTCGATTAGTAACTTCCCAAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACAAGGAATTCTGCCTTTTCTAAATCATTCTTTTCCTT
GTAAGTACCTTACCTATAAGGAATGGAAAC	GATATTATTGAAGTGATTACTGATAAAATTGGCTCCGGAGTATTGAAACCTGCTAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTGTTTGTTAACAAAATTATCATCATTATCATCATCATTAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATTCTCTCATTGTTGTTCTTGAATGCATTGCCTATTAC
GTAAGTACCTTACCTATAAGGAATGGAAAC	TATACATTGTCCCATTACTTCCAACTAATTCAAACTTAAAC
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAAACCAAGTCTCCTTTCCTACTACATAATCGGATGCAAAATACTGA
GTAAGTACCTTACCTATAAGGAATGGAAAC	CATAGCCGTATACAGAAATAGGTGAGTAGTTGCCGAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAAGGGTAACGTTGTACACCTAAGTAACCTTTTACTTTCAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TCTTTGTACTTACTTATAAACTCAAATATGAATTTAAAGT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTTGAAAAAGAAAAGATTTACTAGCCTTCCTGACCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTCGTCTTCGGATCCGATGATTCCCTTTTTGAAACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	GCCATCGGTATCGATGATAAGATTGTGACTCCAATAGTCACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAGATGATTTTGATATATCTGATGATAAATCTGATG
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTTGTTACCCATTTTGATGCATCACTATATAATTCTTTGTTTTTTTTC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACTATTACATATTCGTTTCTTTTTCATTTTTTTATCTCCTTTAAAAGA
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTATCAATCATTCCATCTTTATCCAAAGCTATCTTA
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACGCCCTTTTTATTTCTTTTCATATATCTCTCCTTT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTTTATGCCTGTAAGATATGTTGAGAATATTGATGCCGCCATTACAATCCA
GTAAGTACCTTACCTATAAGGAATGGAAAC	GAAAATACTTATATACTTTTTGTCGTATCGATTCTATGTCTTCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTTAGGACAAGCTACTGATACAGAGTAGAATTCTCTGTCGTCACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TAATTATAATAGCTATTATGTTGCTTGGGACTTCATTAATCCC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATTTATAGAGGCTAGTTTCAGATAAGCAAGATCATTCTTAAAAGGCAAA
GTAAGTACCTTTCCTATAAGGAATACCTTT

>NZ_LR699010|7|4|1546311-1547700|PILER-CR
	AATAATTATTCTTCTTTAGCTGTAGATGTAAAGAGATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTGATGGTCTAACACTCATAACTAACACCTCTTATTATT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TAAAAGGCTTAGGGTATTCATTTTTGGAGCTTTCAAAGCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	CTTCTGCCTTAGCGGCATTGGCCGTGATTACGCTCACGATATAATA
GTAAGTACCTTACCTATAAGGAATGGAAAC	CAGGCTTATAAAGGAAAAGTCGATTAGTAACTTCCCAAAT
GTAAGTACCTTACCTATAAGGAATGGAAACACAAGGAATTCTGCCTTTTCTAAATCATTCTTTTCCTTGTAAGTACCTTACCTATAAGGAATGGAAACGATATTATTGAAGTGATTACTGATAAAATTGGCTCCGGAGTATTGAAACCTGCTAATGTAAGTACCTTACCTATAAGGAATGGAAAC	TTGTTTGTTAACAAAATTATCATCATTATCATCATCATTAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	ATTCTCTCATTGTTGTTCTTGAATGCATTGCCTATTAC
GTAAGTACCTTACCTATAAGGAATGGAAAC	TATACATTGTCCCATTACTTCCAACTAATTCAAACTTAAAC
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAAACCAAGTCTCCTTTCCTACTACATAATCGGATGCAAAATACTGA
GTAAGTACCTTACCTATAAGGAATGGAAAC	CATAGCCGTATACAGAAATAGGTGAGTAGTTGCCGAAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAAGGGTAACGTTGTACACCTAAGTAACCTTTTACTTTCAT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TCTTTGTACTTACTTATAAACTCAAATATGAATTTAAAGT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTTGAAAAAGAAAAGATTTACTAGCCTTCCTGACCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTCGTCTTCGGATCCGATGATTCCCTTTTTGAAACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	GCCATCGGTATCGATGATAAGATTGTGACTCCAATAGTCACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AAGATGATTTTGATATATCTGATGATAAATCTGATG
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTTGTTACCCATTTTGATGCATCACTATATAATTCTTTGTTTTTTTTC
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACTATTACATATTCGTTTCTTTTTCATTTTTTTATCTCCTTTAAAAGA
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTATCAATCATTCCATCTTTATCCAAAGCTATCTTA
GTAAGTACCTTACCTATAAGGAATGGAAAC	ACGCCCTTTTTATTTCTTTTCATATATCTCTCCTTT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TTTTATGCCTGTAAGATATGTTGAGAATATTGATGCCGCCATTACAATCCA
GTAAGTACCTTACCTATAAGGAATGGAAAC	GAAAATACTTATATACTTTTTGTCGTATCGATTCTATGTCTTCT
GTAAGTACCTTACCTATAAGGAATGGAAAC	AGTTAGGACAAGCTACTGATACAGAGTAGAATTCTCTGTCGTCACT
GTAAGTACCTTACCTATAAGGAATGGAAAC	TAATTATAATAGCTATTATGTTGCTTGGGACTTCATTAATCCC
GTAAGTACCTTACCTATAAGGAATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111524247.1\|1540907_1542413_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111524243.1\|1538874_1540794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_LR699010.1\|WP_111524238.1\|1532261_1533992_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR699010.1\|WP_111524240.1\|1535818_1536658_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_LR699010.1\|WP_111526031.1\|1555215_1556952_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NZ_LR699010.1\|WP_111524241.1\|1536681_1537359_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_LR699010.1\|WP_111526097.1\|1563176_1563581_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111526033.1\|1551268_1552786_-\|CRISPR-associated-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NZ_LR699010.1\|WP_111526134.1\|1544091_1545666_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_LR699010.1\|WP_111524239.1\|1533981_1535718_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LR699010.1\|WP_111526035.1\|1548739_1550749_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NZ_LR699010.1\|WP_111524237.1\|1530381_1532247_-\|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_LR699010.1\|WP_172621796.1\|1529672_1530413_-\|DUF2344-domain-containing-protein	unknown	unknown	gnl\|CDD\|378393
NZ_LR699010.1\|WP_111526102.1\|1561250_1562756_-\|hypothetical-protein	csx1	pfam09455_csx1_CAS-III	unknown
NZ_LR699010.1\|WP_111526030.1\|1557006_1557363_-\|hypothetical-protein	csx20	cls000118_csx20_CAS-I:CAS-III	unknown
NZ_LR699010.1\|WP_119808267.1\|1559308_1561063_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_LR699010.1\|WP_111526034.1\|1550751_1551288_-\|hypothetical-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NZ_LR699010.1\|WP_111524242.1\|1538605_1538866_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_LR699010.1\|WP_111526036.1\|1547877_1548186_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_LR699010.1\|WP_111526032.1\|1552799_1555268_-\|CRISPR-associated-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111524243.1\|1538874_1540794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	3.92021e-102
NZ_LR699010.1\|WP_111524238.1\|1532261_1533992_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.10941e-173
NZ_LR699010.1\|WP_111524240.1\|1535818_1536658_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	5.97993e-100
NZ_LR699010.1\|WP_111524241.1\|1536681_1537359_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	2.93632e-139
NZ_LR699010.1\|WP_111526033.1\|1551268_1552786_-\|CRISPR-associated-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.27528e-12
NZ_LR699010.1\|WP_111526134.1\|1544091_1545666_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.9554e-40
NZ_LR699010.1\|WP_111524239.1\|1533981_1535718_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.11244e-143
NZ_LR699010.1\|WP_111526035.1\|1548739_1550749_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	7.03794e-45
NZ_LR699010.1\|WP_111524237.1\|1530381_1532247_-\|TIGR03960-family-B12-binding-radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0
NZ_LR699010.1\|WP_172621796.1\|1529672_1530413_-\|DUF2344-domain-containing-protein	gnl\|CDD\|378393	pfam10105, DUF2344, Uncharacterized protein conserved in bacteria (DUF2344). This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function. This domain is distantly related to tRNA pseudouridine synthases, suggesting this family may carry out a function related to RNA modification. But this family appears to lack the catalytic aspartate found in pseudouridine synthases.	1.46615e-71
NZ_LR699010.1\|WP_119808267.1\|1559308_1561063_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	9.84216e-27
NZ_LR699010.1\|WP_111526034.1\|1550751_1551288_-\|hypothetical-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	1.96776e-11
NZ_LR699010.1\|WP_111524242.1\|1538605_1538866_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.4007e-25
NZ_LR699010.1\|WP_111526036.1\|1547877_1548186_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	1.50141e-13
NZ_LR699010.1\|WP_111526032.1\|1552799_1555268_-\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	3.93303e-09

>NZ_LR699010.1|WP_111526134.1|1544091_1545666_-|IS1182-family-transposase
MKNLPNTYCNSKQGYLPLFFSDCLDLLDPVLTFDRLIGGIDLNKYLTDIPEYITGRRRYNPVNMLKTVLFGFMTSGYCSLRKLEDNCKVNIRFMYLMDNRTPSYRTFGYFINKILKDKIENIFNDINHAIFNEEHVDLQHLYIDGSKFEANANKYTWVWKKATEKFRYKLYEKITAEIDEINAEIAWSGVQITTNTEYVPDYLNEIVEQLVLLWELDTSTFVYGSGKRKSKEQRHYEHLTTFCHKLQEYIQKIEISGTDRNSYSKTDTSATFMRIKTDYMGNDQLLPAYNVQIGVADEYIAVVDVNHYRSDMDCFVPLMEHFKQTYGFYPKYPVADAGYGSYNNYIFCEQNGIEKYMKFPMFKKETKDRKYHEDPFRAVNFRIDEQGVMRCPNDKAFHFLCRKDVRGNQYGRKEELYECEDCSGCPYAKKCKKTDKNRTVRINQELTSMHREVIENLESIHGALLRMNRSIQAEGTFGIMKSDRWYKRIVRRGIHSVKLEVLLVAIGHNLYKYQKKKTRNRTSA
>NZ_LR699010.1|WP_111524247.1|1540907_1542413_-|hypothetical-protein
MERGDSFQGVGNDGKDITIDDCKSQGESVVRYFLKLMPSDDEVDIVMLCSRKTLEKDEKNGIDNKGNIYSAVSYLIERIDRSPEKGKHKINYKVIKLYKNELPVEHRLQEMDDIDPSIPLMPATKEEEIHFPEDELGAISEAAEFIRYKKLQEKRSFRLYIDTHGGLRDVVLSLSAVISLLSVGESIRPKLISGINMALARIEDQSATFNIFNFFSGINDFLHFGNADILSEYFDMKKDVSYLAGADPIVQKTAKQIVKHMQKISLGAQMSDPKAFLEGLKELGNEFEKNGGSSLKGTTLGIFEKKIKDEYGSLLTNPNILDLIIWCIDHGLIQQALTFIESMLPYYYWDKKLLYFDKEQLKKFDEDAYIAFNRYIGRLRFNQQKSNKELNFFAYHLLENTGEYDVTWARPRNTTLRYYHPEDAAKGEDLEAKSKWINYDNYGNVKMEDFRNKVVPLLQSHRILKIIRNSFNHGNSEYRVSLPKLKMFIINYISDLKKAKK
>NZ_LR699010.1|WP_111524243.1|1538874_1540794_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKLTMADIFIPEQIEEALSHLSTKKDTCGIDGLYLSELRDDWNINGARYLSLLRDGKYKPGIVQIYEIINYTGKRRSISSFNSVDRLILRCLATSLEKYYDSIFSACSFAFRPGLGVDKAVASFVSNLNKGLDKVVVIDIKHYFDSIPIDRLEMILKRIIDDKILISLFHKFLYCRISEENIIKTKNKGILQGSPISPFLGNLYLSLLDTQLESMQIPFCRYCDDISMFFSSFEEAKEGYTKVIDILKNDLEMDINSQKSGIYEGIKQNYLGYSFTKNKKQNQILAIKKKKAPPQIYQHWSTTAIQRIDRNYHIINNGILNRKDFTILFENDRGKKYLPVEATESLNVYSSVIFSSDFFKYIGGKKISVNIFDKYGELAGTFSPPESLHGGLTMLKQAAIYLDEDKRKLIARKLEIASLHNMRSNLKYYERHHSHENLKNGIKAFSEWITEMNEATDVPMLLTIEARARQLYYSLFHEIIDDPAFRFTKRTRRPPRDPLNALISFGNMFLYNRIATEIQKTSLDIRIGFVHATNRRSQSLNLDIADLFKPLIVDRAIFTIINRHMIHASEHFEKTEDGGIYLNKEGKQIFINELENKVYQKQTEENQPRTYDTRIREEIHKIFRFVCYDEKYKPFKYN
>NZ_LR699010.1|WP_111524242.1|1538605_1538866_+|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNAKRDPKVMKTLRKYLTHEQRSVFEGLITPGRLKHLKEELKRIVDVSEDCINIYSLETLRYSKKESIGKQVYHGNIL
>NZ_LR699010.1|WP_111524241.1|1536681_1537359_-|uracil-DNA-glycosylase
MSELTGEWKEVLSAEFRKPYYRSLYEFVKEEYSKYIIYPPADKIFEALHLTALSDIKVVILGQDPYHGENQAHGLSFSVPKSQKKIPPSLVNIYKELQDDVGTYIPNNGNLLKWSKQGVLLLNTILTVRAHKAFSHQGKGWENFTDAIIKIINDTDRPIVFMLWGSAAISKSKMLNNPKHLVLKSVHPSPLSAYRGFFGCKHFSKANEFLLKNNISPIDWQIENV
>NZ_LR699010.1|WP_111524240.1|1535818_1536658_-|undecaprenyl-diphosphate-phosphatase
MNILEILKVIIIGIVEGITEWLPISSTGHIVLVEQLFQLNASKEFKAMFEVVIQLGAILAVVVMYFRKLNPFSKSKSPKKRRLAMELWTKIIIACLPAAMLGLLIDDWVEEHLLNGFVIAMALIIYGVLFIMIENSNKKREYSIRNVNAIDYQTALSIGFFQVLALVPGTSRSGATIIGGMILGATRSVSAEFSFFLSIPIMFGASFLKLAKFGLHYTVAEVVYLLLGMFVSFIVSIFSINFLLNWIKKNDFKFFGYYRIGLGIIVLVWYFVSTLMKMK
>NZ_LR699010.1|WP_111524239.1|1533981_1535718_-|ABC-transporter-ATP-binding-protein
MLRLIRYLKEYKLESVLAPLFKLLEAAFELLVPLVIARIIDIGIVNKDSKYVINMGILLVSLAMIGLTSAIIAQYFSAKAATGFGTKLRDDLFAHILSFSHAETDVLGRDTLVTRVTNDSDQVQNGVNRFFRLVLRSPFIVAGAFIMSFHIDAKMSLIAFTVIVILAIIVAFIMSKSIELYRNVQRKLDKVLGKTGENLTGIRVIRAFSKESSEILEYNNATKDLYNDQVLVGNISALLNPLTYVVVNLGIVAILQTGAIQVNIGNLTTGQVVALINYMSQILVELVKFANLIILLSKASACAKRINEIFDIKSSISGGSDELNLKDFDGEIIAFENVGFVYPKSKEEALSDITFSVKKGETIGIIGGTGSGKSSLINLIPRFYDISRGSIKLAGRDIKEYSLESIRKNVALVEQKSRLFRGNIRNNLLWGDAKASDKALYEAADIAQAMDVINSKEGKLDSEVAMYGNNFSGGQKQRLSIARSLVKKAGILILDDSSSALDYATDSRLRKAIREIENVTTLIVSQRIVSIKNSDRIIVLDDGRIVGIGTHDELLENSPIYKEIYNSQIMAKEDSDEE
>NZ_LR699010.1|WP_111524238.1|1532261_1533992_-|ABC-transporter-ATP-binding-protein
MKNNKNTLKRILNLLSPYKFRMAVSLILAVVIVLTTLYLPILTGRAVDTIVGKGNVDFERLIKIIFIMIIMMCVTAVAQWCMTAINNGVAYHMVRDIRNQAFNKIMRLPISYVDSTSHGEIINRIINDVDQFSEGLLMGFAQFFTGILTIVLTIIILFTINVYVTLVVLLVTPLAMLVAGFIAKNTYKHFKSQSEKRARMTGIVDEMIAGLSTVKNFTMENQIENEFKESDEELRVASQNAIFISAIAFPATRFVNSLVYAGVAISGALLVITGNMSVGQLTSVLSYATQYTKPFNEISGVVTELQNSFACAARVFSLIDEEEILPDKDVNNVIKDVEGNVEVSHVYFSYDKSKKLIEDLNLDVKAGQRIAIVGPTGSGKSTIINLLMRFYDIDSGSIKIEGKDIGDITRKSIRENFGMVLQETWLKNASIRDNIAFGKPDATFEEIEAAAKEAYADSFIKRLPDGYDTIVTEGGENLSAGQRQLLCIARIMLVLPPMLILDEATSSIDTMTEARISKAFDKMMMGRTSFVVAHRLSTIKNADMILVLKDGHIIEQGNHNELMDMKGFYYELNNAV
>NZ_LR699010.1|WP_111524237.1|1530381_1532247_-|TIGR03960-family-B12-binding-radical-SAM-protein
MRKLALSDDILLSVDKPARYIGGELNSRDKSLENVDIRFVMCFPDVYEIGMSHIGMQIIYDMLNRREDTFCERLFSPWVDLDKVLREKNIPLFSLESQENVKDADILGITLQYEMCYTNILQILELSQIPMYAKDRGEEYPIVIGGGPCSYNPEPLAPFFDIFYIGEGEVVYDALLDLYKECKKNKLSKHEFLRKAAKLDGMYVPEFYDVSYKEDGTIESFTPKHEDVPSVVHRVVVQNMDEVSYLSKPVVPFIKVTQDRVVLEIMRGCIRGCRFCQAGNVYRPQRERSLEYLINYAKTMLDITGAEEISLSSLSSSDYSQLDKLLNFLLEYTKERGINISLPSLRIDAFSLDVMSKVQDVKKSSLTFAPEAGTQRLRDVINKGITEEDILNGSMEAFKGGWNKVKLYFMLGLPTETEEDIKGIPQLCEKIAEHYYSIPKDQRIGKVSITASSSFFVPKPFTPFQWAKMETEEEYLRRAHLVKDTFREQLNQKSMKYQYHDAEVTLLEGLMARGDRKIADVIVNAYKNGAMYDSWSDQFNMEYWLMAYEQTCIDPTFYTLRERDIDEIFPWDFIDAGVTKNFLIREWKTAHEDKISPNCRQQCLGCGARKYNGGVCLESAN
>NZ_LR699010.1|WP_172621796.1|1529672_1530413_-|DUF2344-domain-containing-protein
MEVFVLKVRIKFEKTEQMRFIGHLDLMRYFQKAMRRADIPIKYSEGFSPHQIMSFGAPLSMGVSGLGEYMDIELKEGSHISSSEAIKRLNDMMCTGMKVTKFLQIPDNSKPAMALMDTADFKAEFKTEVLETDIREAIDKLMSKESILLTKVSKKKKKNQFGKFVEVETTSVVDIKSFIYKLDAIENGVFMHLSQGSTNNIKPAAVMDFLYEEGLPQAKRNEYYLYRLDMYTEEGKALDEYGCEII
>NZ_LR699010.1|WP_111526036.1|1547877_1548186_-|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MNKNTLIQFRIDHDLKIDAENICNQLGIDLTTVLKMCLKQIIIQKGIPFSVHLPDDGEKYHSDSNVNDSKRQGIDKKSDKDFEIDIRGINEEVESIRKENRI
>NZ_LR699010.1|WP_111526035.1|1548739_1550749_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MPKNENKQNGKDEKNSKIKYKYEISNKKFFINPYTFLKGNKKVNREEKEQEVGNHTGVFVCRIYPKTPLLIPDVFKKKEIVDRKEKNTKNKEIKHFSYPFFRLGDNPVIPGSSIRGPLRSVYEALTDSCYSTARSGQYITARTKSPFLPGLLIKTNGKWELYSATRYLLPIKEYGARPFDNGKIFKYKEVIDNHGGSVYFEGDEHTENIRGRSILQYRVLHTSIVKKPGYELGYYYIGEYINGKKYESIFKKVDLKSNNSKLIENCFEQLKEIKKKYMDEKINQKFVSSREPGNKDHHGGYKQVDLKKFEEANDAVLPIWYKKNTNKDKKVEYYFSLANIGRFRYETSMDKILGKQDDGRMPCHDVKKLCKTCSLFGMVGDEEGFGSHIRITDAIFDGNIDEAIKEYKLTELRTPHPSYLPFYADVKDYSLGYDAAECNIKGRKFYRHFIPDYKGLGKLDPQKIDSKMEGIGEGSFRFKVYFENLTQEQLDELATLLCLGENNKDGNLCFKLGHGKPLGFGSAKIVIESLEERIFNHYIIDKNKGDKNNYEYKKKIYSDLKKWNIHKESGSEEEISKIQESIKAMRSILDITVFTNLDANTKVAYPYVLDKRKDKSQKLAINDLASSKWFSENLKLGGDSPKYSLKWSSTDIDKQKLPVMELMEDEKKK
>NZ_LR699010.1|WP_111526034.1|1550751_1551288_-|hypothetical-protein
MENTKIEKNDKKTILDKIKNVFSNCGDNTFFVAQYTDKFDIGIWNENTIENTNKLLELRVFDKDKEWKLFRSDIGKDFSYRFQGEEDNKGEGVDYFDEVQLLDIDTSKECKKSELMKTTAGGEYNLPKDISDLDRAAISVRHYFGVDNESGQAFIRDYRLVDFESAKKRDYSKNLKGV
>NZ_LR699010.1|WP_111526033.1|1551268_1552786_-|CRISPR-associated-protein
MGKIIKKHYLKITFQLESPLCIGSGRNDITDQDILRDARGIPYIPGSAVAGVIREACDEAIDESGLKYYFGYAHINKGKNDESVESSIIESKIIFYDATLVDDGKNKKRELLYRISQRDGVALNEYKSAKKQAKFDWEILEGDCKFQTFIEISEEESDDEIAAEEMLINIAKVWKEADIRFGAKTTRGFGKICNVDIIRRSFELVKNSDNGKGNIEDWLEFDAFDNKSWEDNDSYEKISSDFKKYNEWKLKEKKKLSLRLKLQGGISIRRYSTQCSEEESSPDQEQMTTIKFNNKKSSDQDQVESQKSIEEIAIIPGTTWAGAIGHRMEELIEGSKVTKFKRSEKDIQSYHYFGAANDKDKEKSNIYFGESRLTGGEFKIMSRNAIDRFLGSTAEGALFTEKIYIGGETTLDISFGDPYNTAVVYSDDFIKALAATLTDLHEGYLAVGGATSVGRGVFSITHINGDEFDTVKQEDGENHPVFDKLYNTLKTLLEKKEARDGKHKN
>NZ_LR699010.1|WP_111526032.1|1552799_1555268_-|CRISPR-associated-protein
MIWDMEKLKKGRKKMQNKKQGEIHITLYSDLCSGNGYSYYGTIDSEAEHDEFGLPFIPARRLKGCLRECAELLSDSGLWGKSNDESGDTEKYTDPLNYLFGVSADDGTKGIRIENAYISEYEQIKKDLKLIKENKQIQKYISPDEVLDIFSDVKAQTKMENGVADDNSLRFTRIIHQFSPFNKENRLEFIAKVEYPEGQEDKLKQICKALRHIGMNRNRGLGCVKCEFKAEDEAANIKDENLIAENEADNVKCKIQIAKDMVINENSDQKLNITIFFENLGPMIISGDDKNTTLNYIPGKAVLGALAGTYLSEAGHSADDEEFVHLFLNGDTIYSDFNISDGVHIFAPAPSFLNKMKKSKKYVNSLRYSEKQVSDNKDYDTDNKDYDPANGNQPKKLKGKYIYLEINKDNRKVFEHEPKQRVIYHHRRGNDALLYSQTALKEGQIFGGNIICNTKDYKLLLGLLKNTNFSFGKSKTAQYGKCRIIEGLVDELFKKDTKFQVKKDELIYVSLASKGIFLDECGYTQESKKVYQIIGEQLGLLNKEADISKKIGEIQGEEKDYPFCSIQSAMIYGYSGVWNLRKPPIAGIESGSTFIYRAVEDKDIDKYYVGERNLEGFGKVNLYREDLLPYELNIEVKNSNTENNDTKTDNIENIDNTLKNLSEGVREILKQSLYKVLYQNMLERILTEMANDSFKLRMSPSTIGRVNLMVKETLPKNEKEANDKYKDFVKRVASIKRDTEREEALKIVGRFLGSVPSKEKEDADLDIKKMIGESLDQDSNSENVRLLCKLTDKKEVNAHISSLWGELMLELLANQKYLKKFN
>NZ_LR699010.1|WP_111526031.1|1555215_1556952_-|hypothetical-protein
MEEKGYVLCMYDIRGKQEFIYRSSKLKEIVGASLIIRDLFEDYLYDAAKTCRDNINKESKVKEEYKDEDAIFRYDPNKEKLDKFSFKQFEERMDGNQYIGEIVYDGGGNFLLLYKDENAMKKTTEIFTKKILKEIGTLKVVATYIGDISKDNYHSDDLKNPGDYERLYQKHRLRESTALYTLPYGSLPIVQTEPTSSLPLTYMYDNAPADSSASEKKYVKYSTETNAKLKKYWKEASNPGYEMGETVLDNIVAETKGEDSMLAIFYIDGNAMGAKVQACLNGKKNYDDCVNLLREFSKKIQKTFIDDRKVDMLKTDETKSSDKKNYKSRILIGAGDEMTIICKADESYETIKEYLSKIPSPYSSCAGAAIFHSHTPFADAYRIAEQCCEDTCKNYMKKNGLTLANLMDFEYCQGGIGFSLKDIREENGDDNNSRPWLVESEVEEKVSYHYKPVKNKNLPSWEKGKTEEERSNKEKINKLKDLLSLQKVEDFHTNLSLLGRTNIKGLAIPVSLSETALRTELRRIIAHMSKDKKEKMGFKSDADIVEYFVENKKLLKDLVRMYDMGYGKAKEGEEENAK
>NZ_LR699010.1|WP_111526030.1|1557006_1557363_-|hypothetical-protein
MINFTNHPYEMWDDAQKRAASEFGDIKEIPFPAVDPSATEEDLDNLAEEYREKVLALKDPMILLQGEFTLSFRLVQLLKKDGLKVVAACSERRVHEWRDDDGKYHKEMLFEFVQFRRY
>NZ_LR699010.1|WP_119808267.1|1559308_1561063_-|IS1182-family-transposase
MLTVNYYNDFFEIGQQKINFSFYELSLPDDDPVYTLKKVMEDLDFSGLLANCSDKGRTGYNPIMMYAVITYANMRGIRSIDRIVDLCERDIAFIWLTQGRKPKRDAFYEFKSKKLTSDILDDLNYQFMRRLQKEGFVTLKELFIDGTKIEANANRYTFVWRGSINYHLAGLLDSIDKLYSDYNSFLQDNGFGEKYELGNAQMFVIDGIDRVRDIIEKNRKRKITKHKKLSNNRIIEIDNCSPIEILKLQKNLMTIADGEGIVFVNGKGKRKPKLQQLYEELEHCGQRLMHYKECFEIMGKDRNSYSKTDLEATFMRMKEDHMLNGQLKPAYNVQIAVENYFIVHSYVSNDRTDYNALIPVLEKHKEAFGEVLEEVTADSGYCSEKNLLYLKENKIDSYIKLQDHEKRKTRAYSKDIGKYYNMKTMVFEDEQVYICHDGRELRHINTEKKKQNGYTQTYEVYGCSDCSGCEHKSKCLYKYNPDKDVDKNKVMKINEVWEELREKSHANIQSEKGILKRQTRSIQTEGHFGDIKENEDFRRFNYRSSDKVYKEFMLFAIGRNINKYHRFLYAKLKKFEGKPQEKTA
>NZ_LR699010.1|WP_111526102.1|1561250_1562756_-|hypothetical-protein
MDKGDYFRGIGNDGKDVIINDCRSQGESVVRYFLEIMPSDEEVDIVMLCSRKTLEMDERNGTYKKGNIYSAVSYLKERIERSPEKGKHKINYKIIKLYKNKLPNEHRLQEADDIDPSIPLMPANKEEESFFPEDEIGAISRAVEYIHYKKLQEKKTFKLYIDTHGGLRDIVFSMSAVNSLLYVGEAIRPKLISGINMASARIENQSEKFNVFNFFSGINEFLHFGNADILSEYVDIKSDFSYLTGADPSVQKIAKQIVKDMQKISYGVQMSDPRAFMEGLKELGNEFEKSSESNLKNTPFGILEQKIKDEYGSLLTNPNILDLIIWCVEHGLIQQALTFVESMLPYYYWDKKLLYFDKEQLKRFDEDENMAFNRYISRFRFNQQKTNKEMNFFAYHLLENTGEYEVTWARPRSTTLRYYHPESAAKGEDLEAKSRWIYNDNYGNVKLEDFRNKVLPLLQSHRILKIIRSSFNHGNLEYRISLPKLKRFILNYISELKKAKK
>NZ_LR699010.1|WP_111526097.1|1563176_1563581_-|hypothetical-protein
MKSDFLDYVIYKIILSIPIRQETEAEVDEYVICDNEYLRATFLGIGDSFGYVTLDVKLENKTDGEITVIPMDSSVDDVMVQFLSGLPATMQGHKSMNQAWLIGSEPQNNIEFKLWIVDENWSDLYKTETIRLVR

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Crispr_ID: NZ_LR699010_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_8

1558094-1559135

TypeIII

Consensus_repeat	Method
GTGAGTACCTTACCTATAAGGAATGGAAAC	PILER-CR
GTGAGTACCTTACCTATAAGGAATGGAAAC	CRISPRCasFinder
GTGAGTACCTTACCTATAAGGAATGGAAAC	CRT

14 spacers

csx20,cas10,csm3gr7,csx19,cas1,csx1

The CRISPR arrays of NZ_LR699010_8

>merge|NZ_LR699010|8|1558094-1559135|PILER-CR,CRISPRCasFinder,CRT
GTGAGTACCTTACCTATAAGGAATGGAAACATCTCAGACTACTGTCTCCCCACGCATCTCTTCCTTCTGGGGTGAGTACCTTACCTATAAGGAATGGAAACAAAGCTTCATTGCTACAATACATAACCCTATAAGGACTAATAGTGAGTACCTTACCTATAAGGAATGGAAACAATTAACAACTTCCGAAACATCAGACTCCTCTGGGTCAAAAGAGTGAGTACCTTACCTATAAGGAATGGAAACCTAGCCTTCCTGTCCTGAAGCGTCTGCCTTAGAGGAGTGTGAGTACCTTACCTATAAGGAATGGAAACTTTTCTGTCAAAGATATCCAACCGACTCTGCGCTTACTGTGAGTACCTTACCTATAAGGAATGGAAACTGTCGCTCCGACTCCTTGGATTTACTATTTGCTCATATAGAGTGAGTACCTTACCTATAAGGAATGGAAACAATACGTTGGTTTTTACTACAGTTCCGTCAGGATTGCGTTTTTCAACGTGAGTACCTTACCTATAAGGAATGGAAACAAAACTCATCGGACGAAATATCCGATTTTGTATCTCCAACGTGAGTATCTTACCTATAAGGAATGGAAACTTAATCTTTCCAGATGTCACTCTGACCTTTGCCACATCTTGGTGAGTACCTTACCTATAAGGAATGGAAACGCTTCAACCATTTTAATTACTTCTGAGAATGGTTTATCCTGCATATTGTGAGTAGCTTACCTACAAGGAATGGAAACAATCTTAAAACAAACGTATAAAACATTTTTAGCAATCCTAAAACGTGATTACCTTACCTATAAGGAATGGAAACTTCATTGTCCTGTCTGTTATATAGCAGCAGGTTAGAACCCAAATAGTGAGTACCTTACCTATAAGGAATTGAAACTTTTTGATTAAAGTTGTTAACTTCAATCCTTTTCCTATAGTGAGTACCTTACCTATAAGGAAATGGAAACGGGTCTGGATCATTGCCTGGTTTAGTGGGCTTTGTTTGATCTGTATTAAGTACCTTACCTACAAGGACTAAAAAA

>NZ_LR699010|8|5|1558094-1558693|PILER-CR
GTGAGTACCTTACCTATAAGGAATGGAAAC	ATCTCAGACTACTGTCTCCCCACGCATCTCTTCCTTCTGGG
GTGAGTACCTTACCTATAAGGAATGGAAAC	AAAGCTTCATTGCTACAATACATAACCCTATAAGGACTAATA
GTGAGTACCTTACCTATAAGGAATGGAAAC	AATTAACAACTTCCGAAACATCAGACTCCTCTGGGTCAAAAGA
GTGAGTACCTTACCTATAAGGAATGGAAAC	CTAGCCTTCCTGTCCTGAAGCGTCTGCCTTAGAGGAGT
GTGAGTACCTTACCTATAAGGAATGGAAAC	TTTTCTGTCAAAGATATCCAACCGACTCTGCGCTTACT
GTGAGTACCTTACCTATAAGGAATGGAAAC	TGTCGCTCCGACTCCTTGGATTTACTATTTGCTCATATAGA
GTGAGTACCTTACCTATAAGGAATGGAAAC	AATACGTTGGTTTTTACTACAGTTCCGTCAGGATTGCGTTTTTCAAC
GTGAGTACCTTACCTATAAGGAATGGAAAC	AAAACTCATCGGACGAAATATCCGATTTTGTATCTCCAAC
GTGAGTATCTTACCTATAAGGAATGGAAAC

>NZ_LR699010|8|8|1558094-1559135|CRISPRCasFinder
GTGAGTACCTTACCTATAAGGAATGGAAAC	ATCTCAGACTACTGTCTCCCCACGCATCTCTTCCTTCTGGG
GTGAGTACCTTACCTATAAGGAATGGAAAC	AAAGCTTCATTGCTACAATACATAACCCTATAAGGACTAATA
GTGAGTACCTTACCTATAAGGAATGGAAAC	AATTAACAACTTCCGAAACATCAGACTCCTCTGGGTCAAAAGA
GTGAGTACCTTACCTATAAGGAATGGAAAC	CTAGCCTTCCTGTCCTGAAGCGTCTGCCTTAGAGGAGT
GTGAGTACCTTACCTATAAGGAATGGAAAC	TTTTCTGTCAAAGATATCCAACCGACTCTGCGCTTACT
GTGAGTACCTTACCTATAAGGAATGGAAAC	TGTCGCTCCGACTCCTTGGATTTACTATTTGCTCATATAGA
GTGAGTACCTTACCTATAAGGAATGGAAAC	AATACGTTGGTTTTTACTACAGTTCCGTCAGGATTGCGTTTTTCAAC
GTGAGTACCTTACCTATAAGGAATGGAAAC	AAAACTCATCGGACGAAATATCCGATTTTGTATCTCCAAC
GTGAGTATCTTACCTATAAGGAATGGAAAC	TTAATCTTTCCAGATGTCACTCTGACCTTTGCCACATCTTG
GTGAGTACCTTACCTATAAGGAATGGAAAC	GCTTCAACCATTTTAATTACTTCTGAGAATGGTTTATCCTGCATATT
GTGAGTAGCTTACCTACAAGGAATGGAAAC	AATCTTAAAACAAACGTATAAAACATTTTTAGCAATCCTAAAAC
GTGATTACCTTACCTATAAGGAATGGAAAC	TTCATTGTCCTGTCTGTTATATAGCAGCAGGTTAGAACCCAAATA
GTGAGTACCTTACCTATAAGGAATTGAAAC	TTTTTGATTAAAGTTGTTAACTTCAATCCTTTTCCTATA
GTGAGTACCTTACCTATAAGGAAATGGAAA	CGGGTCTGGATCATTGCCTGGTTTAGTGGGCTTTGTTTGATCTGTA
TTAAGTACCTTACCTACAAGGACTAAAAAA

>NZ_LR699010|8|3|1558094-1559135|CRT
GTGAGTACCTTACCTATAAGGAATGGAAAC	ATCTCAGACTACTGTCTCCCCACGCATCTCTTCCTTCTGGG
GTGAGTACCTTACCTATAAGGAATGGAAAC	AAAGCTTCATTGCTACAATACATAACCCTATAAGGACTAATA
GTGAGTACCTTACCTATAAGGAATGGAAAC	AATTAACAACTTCCGAAACATCAGACTCCTCTGGGTCAAAAGA
GTGAGTACCTTACCTATAAGGAATGGAAAC	CTAGCCTTCCTGTCCTGAAGCGTCTGCCTTAGAGGAGT
GTGAGTACCTTACCTATAAGGAATGGAAAC	TTTTCTGTCAAAGATATCCAACCGACTCTGCGCTTACT
GTGAGTACCTTACCTATAAGGAATGGAAAC	TGTCGCTCCGACTCCTTGGATTTACTATTTGCTCATATAGA
GTGAGTACCTTACCTATAAGGAATGGAAAC	AATACGTTGGTTTTTACTACAGTTCCGTCAGGATTGCGTTTTTCAAC
GTGAGTACCTTACCTATAAGGAATGGAAAC	AAAACTCATCGGACGAAATATCCGATTTTGTATCTCCAAC
GTGAGTATCTTACCTATAAGGAATGGAAAC	TTAATCTTTCCAGATGTCACTCTGACCTTTGCCACATCTTG
GTGAGTACCTTACCTATAAGGAATGGAAAC	GCTTCAACCATTTTAATTACTTCTGAGAATGGTTTATCCTGCATATT
GTGAGTAGCTTACCTACAAGGAATGGAAAC	AATCTTAAAACAAACGTATAAAACATTTTTAGCAATCCTAAAAC
GTGATTACCTTACCTATAAGGAATGGAAAC	TTCATTGTCCTGTCTGTTATATAGCAGCAGGTTAGAACCCAAATA
GTGAGTACCTTACCTATAAGGAATTGAAAC	TTTTTGATTAAAGTTGTTAACTTCAATCCTTTTCCTATA
GTGAGTACCTTACCTATAAGGAAATGGAAA	CGGGTCTGGATCATTGCCTGGTTTAGTGGGCTTTGTTTGATCTGTA
TTAAGTACCTTACCTACAAGGACTAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111524247.1\|1540907_1542413_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111524243.1\|1538874_1540794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_LR699010.1\|WP_119808267.1\|1559308_1561063_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_LR699010.1\|WP_111526099.1\|1564477_1565482_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378117
NZ_LR699010.1\|WP_111526031.1\|1555215_1556952_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NZ_LR699010.1\|WP_111526100.1\|1565465_1566230_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_LR699010.1\|WP_111526097.1\|1563176_1563581_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111526134.1\|1544091_1545666_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_LR699010.1\|WP_111524483.1\|1569208_1569802_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NZ_LR699010.1\|WP_111526035.1\|1548739_1550749_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NZ_LR699010.1\|WP_111526033.1\|1551268_1552786_-\|CRISPR-associated-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NZ_LR699010.1\|WP_119808214.1\|1566783_1568172_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_LR699010.1\|WP_111524482.1\|1568869_1569208_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779
NZ_LR699010.1\|WP_111526102.1\|1561250_1562756_-\|hypothetical-protein	csx1	pfam09455_csx1_CAS-III	unknown
NZ_LR699010.1\|WP_111526034.1\|1550751_1551288_-\|hypothetical-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NZ_LR699010.1\|WP_111526030.1\|1557006_1557363_-\|hypothetical-protein	csx20	cls000118_csx20_CAS-I:CAS-III	unknown
NZ_LR699010.1\|WP_111526101.1\|1566219_1566525_-\|thiamine-binding-protein	unknown	unknown	gnl\|CDD\|376658
NZ_LR699010.1\|WP_111526036.1\|1547877_1548186_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_LR699010.1\|WP_111526032.1\|1552799_1555268_-\|CRISPR-associated-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NZ_LR699010.1\|WP_111526098.1\|1563723_1564497_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111524483.1\|1569208_1569802_-\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	5.30821e-46
NZ_LR699010.1\|WP_111524243.1\|1538874_1540794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	3.92021e-102
NZ_LR699010.1\|WP_119808267.1\|1559308_1561063_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	9.84216e-27
NZ_LR699010.1\|WP_111526099.1\|1564477_1565482_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|378117	pfam09084, NMT1, NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	2.09509e-78
NZ_LR699010.1\|WP_111526134.1\|1544091_1545666_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.9554e-40
NZ_LR699010.1\|WP_111526035.1\|1548739_1550749_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	7.03794e-45
NZ_LR699010.1\|WP_111526033.1\|1551268_1552786_-\|CRISPR-associated-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.27528e-12
NZ_LR699010.1\|WP_119808214.1\|1566783_1568172_-\|ISNCY-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.05276e-08
NZ_LR699010.1\|WP_111524482.1\|1568869_1569208_-\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	2.39256e-43
NZ_LR699010.1\|WP_111526034.1\|1550751_1551288_-\|hypothetical-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	1.96776e-11
NZ_LR699010.1\|WP_111526100.1\|1565465_1566230_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.61142e-65
NZ_LR699010.1\|WP_111526101.1\|1566219_1566525_-\|thiamine-binding-protein	gnl\|CDD\|376658	pfam01910, Thiamine_BP, Thiamine-binding protein. The crystal structure of two of these members shows that this domain has a ferredoxin like fold and is likely to exists as at least homodimers. Sulphate ions are are located at the dimer interfaces, which are thought to confer additional stability. Although the function of this domain remains to be identified, its structure suggests a role in protein-protein interactions possibly regulated by the binding of small-molecule ligands. Solution of the structure of the hyperthermophilic anaerobic Thermotoga maritima sequence, UniProtKB:Q9WYV6, shows that this has a beta-alpha-beta-beta-alpha-beta ferredoxin-like fold and assembles as a homotetramer. It was possible to identify a pocket in each monmer that bound an unidentified ligand. It was also found that it bound charged thiamine though not hydroxymethyl pyrimidine. It is proposed that it is transporting charged thiamine around the cytoplasm. Under oxidative conditions this bacterium is under stress, and the transcriiptional unit within which this protein is expressed is up-regulated in these conditions, suggesting that the chelation of cytoplasmic thaimine is part of the response mechanism to such oxidatvie stress, which is mediated by this family.	7.94549e-28
NZ_LR699010.1\|WP_111526036.1\|1547877_1548186_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	1.50141e-13
NZ_LR699010.1\|WP_111526032.1\|1552799_1555268_-\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	3.93303e-09
NZ_LR699010.1\|WP_111526098.1\|1563723_1564497_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.4826e-97

>NZ_LR699010.1|WP_111526030.1|1557006_1557363_-|hypothetical-protein
MINFTNHPYEMWDDAQKRAASEFGDIKEIPFPAVDPSATEEDLDNLAEEYREKVLALKDPMILLQGEFTLSFRLVQLLKKDGLKVVAACSERRVHEWRDDDGKYHKEMLFEFVQFRRY
>NZ_LR699010.1|WP_111526031.1|1555215_1556952_-|hypothetical-protein
MEEKGYVLCMYDIRGKQEFIYRSSKLKEIVGASLIIRDLFEDYLYDAAKTCRDNINKESKVKEEYKDEDAIFRYDPNKEKLDKFSFKQFEERMDGNQYIGEIVYDGGGNFLLLYKDENAMKKTTEIFTKKILKEIGTLKVVATYIGDISKDNYHSDDLKNPGDYERLYQKHRLRESTALYTLPYGSLPIVQTEPTSSLPLTYMYDNAPADSSASEKKYVKYSTETNAKLKKYWKEASNPGYEMGETVLDNIVAETKGEDSMLAIFYIDGNAMGAKVQACLNGKKNYDDCVNLLREFSKKIQKTFIDDRKVDMLKTDETKSSDKKNYKSRILIGAGDEMTIICKADESYETIKEYLSKIPSPYSSCAGAAIFHSHTPFADAYRIAEQCCEDTCKNYMKKNGLTLANLMDFEYCQGGIGFSLKDIREENGDDNNSRPWLVESEVEEKVSYHYKPVKNKNLPSWEKGKTEEERSNKEKINKLKDLLSLQKVEDFHTNLSLLGRTNIKGLAIPVSLSETALRTELRRIIAHMSKDKKEKMGFKSDADIVEYFVENKKLLKDLVRMYDMGYGKAKEGEEENAK
>NZ_LR699010.1|WP_111526032.1|1552799_1555268_-|CRISPR-associated-protein
MIWDMEKLKKGRKKMQNKKQGEIHITLYSDLCSGNGYSYYGTIDSEAEHDEFGLPFIPARRLKGCLRECAELLSDSGLWGKSNDESGDTEKYTDPLNYLFGVSADDGTKGIRIENAYISEYEQIKKDLKLIKENKQIQKYISPDEVLDIFSDVKAQTKMENGVADDNSLRFTRIIHQFSPFNKENRLEFIAKVEYPEGQEDKLKQICKALRHIGMNRNRGLGCVKCEFKAEDEAANIKDENLIAENEADNVKCKIQIAKDMVINENSDQKLNITIFFENLGPMIISGDDKNTTLNYIPGKAVLGALAGTYLSEAGHSADDEEFVHLFLNGDTIYSDFNISDGVHIFAPAPSFLNKMKKSKKYVNSLRYSEKQVSDNKDYDTDNKDYDPANGNQPKKLKGKYIYLEINKDNRKVFEHEPKQRVIYHHRRGNDALLYSQTALKEGQIFGGNIICNTKDYKLLLGLLKNTNFSFGKSKTAQYGKCRIIEGLVDELFKKDTKFQVKKDELIYVSLASKGIFLDECGYTQESKKVYQIIGEQLGLLNKEADISKKIGEIQGEEKDYPFCSIQSAMIYGYSGVWNLRKPPIAGIESGSTFIYRAVEDKDIDKYYVGERNLEGFGKVNLYREDLLPYELNIEVKNSNTENNDTKTDNIENIDNTLKNLSEGVREILKQSLYKVLYQNMLERILTEMANDSFKLRMSPSTIGRVNLMVKETLPKNEKEANDKYKDFVKRVASIKRDTEREEALKIVGRFLGSVPSKEKEDADLDIKKMIGESLDQDSNSENVRLLCKLTDKKEVNAHISSLWGELMLELLANQKYLKKFN
>NZ_LR699010.1|WP_111526033.1|1551268_1552786_-|CRISPR-associated-protein
MGKIIKKHYLKITFQLESPLCIGSGRNDITDQDILRDARGIPYIPGSAVAGVIREACDEAIDESGLKYYFGYAHINKGKNDESVESSIIESKIIFYDATLVDDGKNKKRELLYRISQRDGVALNEYKSAKKQAKFDWEILEGDCKFQTFIEISEEESDDEIAAEEMLINIAKVWKEADIRFGAKTTRGFGKICNVDIIRRSFELVKNSDNGKGNIEDWLEFDAFDNKSWEDNDSYEKISSDFKKYNEWKLKEKKKLSLRLKLQGGISIRRYSTQCSEEESSPDQEQMTTIKFNNKKSSDQDQVESQKSIEEIAIIPGTTWAGAIGHRMEELIEGSKVTKFKRSEKDIQSYHYFGAANDKDKEKSNIYFGESRLTGGEFKIMSRNAIDRFLGSTAEGALFTEKIYIGGETTLDISFGDPYNTAVVYSDDFIKALAATLTDLHEGYLAVGGATSVGRGVFSITHINGDEFDTVKQEDGENHPVFDKLYNTLKTLLEKKEARDGKHKN
>NZ_LR699010.1|WP_111526034.1|1550751_1551288_-|hypothetical-protein
MENTKIEKNDKKTILDKIKNVFSNCGDNTFFVAQYTDKFDIGIWNENTIENTNKLLELRVFDKDKEWKLFRSDIGKDFSYRFQGEEDNKGEGVDYFDEVQLLDIDTSKECKKSELMKTTAGGEYNLPKDISDLDRAAISVRHYFGVDNESGQAFIRDYRLVDFESAKKRDYSKNLKGV
>NZ_LR699010.1|WP_111526035.1|1548739_1550749_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MPKNENKQNGKDEKNSKIKYKYEISNKKFFINPYTFLKGNKKVNREEKEQEVGNHTGVFVCRIYPKTPLLIPDVFKKKEIVDRKEKNTKNKEIKHFSYPFFRLGDNPVIPGSSIRGPLRSVYEALTDSCYSTARSGQYITARTKSPFLPGLLIKTNGKWELYSATRYLLPIKEYGARPFDNGKIFKYKEVIDNHGGSVYFEGDEHTENIRGRSILQYRVLHTSIVKKPGYELGYYYIGEYINGKKYESIFKKVDLKSNNSKLIENCFEQLKEIKKKYMDEKINQKFVSSREPGNKDHHGGYKQVDLKKFEEANDAVLPIWYKKNTNKDKKVEYYFSLANIGRFRYETSMDKILGKQDDGRMPCHDVKKLCKTCSLFGMVGDEEGFGSHIRITDAIFDGNIDEAIKEYKLTELRTPHPSYLPFYADVKDYSLGYDAAECNIKGRKFYRHFIPDYKGLGKLDPQKIDSKMEGIGEGSFRFKVYFENLTQEQLDELATLLCLGENNKDGNLCFKLGHGKPLGFGSAKIVIESLEERIFNHYIIDKNKGDKNNYEYKKKIYSDLKKWNIHKESGSEEEISKIQESIKAMRSILDITVFTNLDANTKVAYPYVLDKRKDKSQKLAINDLASSKWFSENLKLGGDSPKYSLKWSSTDIDKQKLPVMELMEDEKKK
>NZ_LR699010.1|WP_111526036.1|1547877_1548186_-|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MNKNTLIQFRIDHDLKIDAENICNQLGIDLTTVLKMCLKQIIIQKGIPFSVHLPDDGEKYHSDSNVNDSKRQGIDKKSDKDFEIDIRGINEEVESIRKENRI
>NZ_LR699010.1|WP_111526134.1|1544091_1545666_-|IS1182-family-transposase
MKNLPNTYCNSKQGYLPLFFSDCLDLLDPVLTFDRLIGGIDLNKYLTDIPEYITGRRRYNPVNMLKTVLFGFMTSGYCSLRKLEDNCKVNIRFMYLMDNRTPSYRTFGYFINKILKDKIENIFNDINHAIFNEEHVDLQHLYIDGSKFEANANKYTWVWKKATEKFRYKLYEKITAEIDEINAEIAWSGVQITTNTEYVPDYLNEIVEQLVLLWELDTSTFVYGSGKRKSKEQRHYEHLTTFCHKLQEYIQKIEISGTDRNSYSKTDTSATFMRIKTDYMGNDQLLPAYNVQIGVADEYIAVVDVNHYRSDMDCFVPLMEHFKQTYGFYPKYPVADAGYGSYNNYIFCEQNGIEKYMKFPMFKKETKDRKYHEDPFRAVNFRIDEQGVMRCPNDKAFHFLCRKDVRGNQYGRKEELYECEDCSGCPYAKKCKKTDKNRTVRINQELTSMHREVIENLESIHGALLRMNRSIQAEGTFGIMKSDRWYKRIVRRGIHSVKLEVLLVAIGHNLYKYQKKKTRNRTSA
>NZ_LR699010.1|WP_111524247.1|1540907_1542413_-|hypothetical-protein
MERGDSFQGVGNDGKDITIDDCKSQGESVVRYFLKLMPSDDEVDIVMLCSRKTLEKDEKNGIDNKGNIYSAVSYLIERIDRSPEKGKHKINYKVIKLYKNELPVEHRLQEMDDIDPSIPLMPATKEEEIHFPEDELGAISEAAEFIRYKKLQEKRSFRLYIDTHGGLRDVVLSLSAVISLLSVGESIRPKLISGINMALARIEDQSATFNIFNFFSGINDFLHFGNADILSEYFDMKKDVSYLAGADPIVQKTAKQIVKHMQKISLGAQMSDPKAFLEGLKELGNEFEKNGGSSLKGTTLGIFEKKIKDEYGSLLTNPNILDLIIWCIDHGLIQQALTFIESMLPYYYWDKKLLYFDKEQLKKFDEDAYIAFNRYIGRLRFNQQKSNKELNFFAYHLLENTGEYDVTWARPRNTTLRYYHPEDAAKGEDLEAKSKWINYDNYGNVKMEDFRNKVVPLLQSHRILKIIRNSFNHGNSEYRVSLPKLKMFIINYISDLKKAKK
>NZ_LR699010.1|WP_111524243.1|1538874_1540794_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKLTMADIFIPEQIEEALSHLSTKKDTCGIDGLYLSELRDDWNINGARYLSLLRDGKYKPGIVQIYEIINYTGKRRSISSFNSVDRLILRCLATSLEKYYDSIFSACSFAFRPGLGVDKAVASFVSNLNKGLDKVVVIDIKHYFDSIPIDRLEMILKRIIDDKILISLFHKFLYCRISEENIIKTKNKGILQGSPISPFLGNLYLSLLDTQLESMQIPFCRYCDDISMFFSSFEEAKEGYTKVIDILKNDLEMDINSQKSGIYEGIKQNYLGYSFTKNKKQNQILAIKKKKAPPQIYQHWSTTAIQRIDRNYHIINNGILNRKDFTILFENDRGKKYLPVEATESLNVYSSVIFSSDFFKYIGGKKISVNIFDKYGELAGTFSPPESLHGGLTMLKQAAIYLDEDKRKLIARKLEIASLHNMRSNLKYYERHHSHENLKNGIKAFSEWITEMNEATDVPMLLTIEARARQLYYSLFHEIIDDPAFRFTKRTRRPPRDPLNALISFGNMFLYNRIATEIQKTSLDIRIGFVHATNRRSQSLNLDIADLFKPLIVDRAIFTIINRHMIHASEHFEKTEDGGIYLNKEGKQIFINELENKVYQKQTEENQPRTYDTRIREEIHKIFRFVCYDEKYKPFKYN
>NZ_LR699010.1|WP_119808267.1|1559308_1561063_-|IS1182-family-transposase
MLTVNYYNDFFEIGQQKINFSFYELSLPDDDPVYTLKKVMEDLDFSGLLANCSDKGRTGYNPIMMYAVITYANMRGIRSIDRIVDLCERDIAFIWLTQGRKPKRDAFYEFKSKKLTSDILDDLNYQFMRRLQKEGFVTLKELFIDGTKIEANANRYTFVWRGSINYHLAGLLDSIDKLYSDYNSFLQDNGFGEKYELGNAQMFVIDGIDRVRDIIEKNRKRKITKHKKLSNNRIIEIDNCSPIEILKLQKNLMTIADGEGIVFVNGKGKRKPKLQQLYEELEHCGQRLMHYKECFEIMGKDRNSYSKTDLEATFMRMKEDHMLNGQLKPAYNVQIAVENYFIVHSYVSNDRTDYNALIPVLEKHKEAFGEVLEEVTADSGYCSEKNLLYLKENKIDSYIKLQDHEKRKTRAYSKDIGKYYNMKTMVFEDEQVYICHDGRELRHINTEKKKQNGYTQTYEVYGCSDCSGCEHKSKCLYKYNPDKDVDKNKVMKINEVWEELREKSHANIQSEKGILKRQTRSIQTEGHFGDIKENEDFRRFNYRSSDKVYKEFMLFAIGRNINKYHRFLYAKLKKFEGKPQEKTA
>NZ_LR699010.1|WP_111526102.1|1561250_1562756_-|hypothetical-protein
MDKGDYFRGIGNDGKDVIINDCRSQGESVVRYFLEIMPSDEEVDIVMLCSRKTLEMDERNGTYKKGNIYSAVSYLKERIERSPEKGKHKINYKIIKLYKNKLPNEHRLQEADDIDPSIPLMPANKEEESFFPEDEIGAISRAVEYIHYKKLQEKKTFKLYIDTHGGLRDIVFSMSAVNSLLYVGEAIRPKLISGINMASARIENQSEKFNVFNFFSGINEFLHFGNADILSEYVDIKSDFSYLTGADPSVQKIAKQIVKDMQKISYGVQMSDPRAFMEGLKELGNEFEKSSESNLKNTPFGILEQKIKDEYGSLLTNPNILDLIIWCVEHGLIQQALTFVESMLPYYYWDKKLLYFDKEQLKRFDEDENMAFNRYISRFRFNQQKTNKEMNFFAYHLLENTGEYEVTWARPRSTTLRYYHPESAAKGEDLEAKSRWIYNDNYGNVKLEDFRNKVLPLLQSHRILKIIRSSFNHGNLEYRISLPKLKRFILNYISELKKAKK
>NZ_LR699010.1|WP_111526097.1|1563176_1563581_-|hypothetical-protein
MKSDFLDYVIYKIILSIPIRQETEAEVDEYVICDNEYLRATFLGIGDSFGYVTLDVKLENKTDGEITVIPMDSSVDDVMVQFLSGLPATMQGHKSMNQAWLIGSEPQNNIEFKLWIVDENWSDLYKTETIRLVR
>NZ_LR699010.1|WP_111526098.1|1563723_1564497_-|ABC-transporter-ATP-binding-protein
MNLSQNSENILEVSNVSFGYDERNIISNINLTLRENELISLLGVSGSGKSTLFNIISGLLKPNNGQVIYRGKDITGKTGLISYSFQKDLLLPYMTIEENVSLPLLIKKEKKTDAIKKANEMLREFKLDAYASKYPKELSGGMRQRIALIRTYLFSKDVSLLDEPFSALDAITKDEMHEWYMNMRNKYNISTIFITHDVDEAVLLSDRIYILGDGTIKSELKIEGKSRDNSFKLSKEFLDYKKEVLSCLESSNVLIKS
>NZ_LR699010.1|WP_111526099.1|1564477_1565482_-|ABC-transporter-substrate-binding-protein
MRKTIRKILAVVGLGALVLASTACGAKKPANTDSKKLTLVLDWTPNTNHTGFYVALEKGYYKDAGIELEIVQPPEDGAEVLVASGKANFGISFQDTMAGALSGDNPLPIKAVAAITQHNTSGIMSRRGDGITSPKGLEGKNYATWDMPIEKAILKNVVEKDGGDFGKVNLIPSTVTDEVSALSSNQVDAIWVYYGWAGIAANVKGFGFDYFAFKDINPTFDYYTPVLFTNDDMIKNDKETVKSFIEATKKGYEYAAGNPKESAEILLKYAPEIDKELAMASQEYLSTCYIDNDIPWGYIDATRWGDFYRWLNENNLLESPIDEGAGLDNEFITK
>NZ_LR699010.1|WP_111526100.1|1565465_1566230_-|ABC-transporter-permease
MRNKRDNIYPITFGIVFLLLWQIFCTLQIIPVYLMPSPLQIAKAVIGDFPLLMYHLLYTLSESIIGLFAGVVLGLLFALVMDRFARVYKTFYPIIIISQTIPTIAIAPLLVLWFGYDLLPKVILIVLVTFFPITIGVLESFKSTDRDEINLLKSMGASEFDIYRYIKLPSSMGKFFAALKISASYSVVGGVISEWLGGFRGLGVYMTRVRKAYAFDKMFAVIIIISILSLLLLRAVDLLQKVSMPWEERREKNN
>NZ_LR699010.1|WP_111526101.1|1566219_1566525_-|thiamine-binding-protein
MNASVAIQTLPEVYDNEEIVRIVDEVIAYIKSTGLKYYVGPFETTIEGDYDELMDIIKECQHVAIRAGAPGVMAYIKVSFRPDGDLLTIDRKVTKHHLDEK
>NZ_LR699010.1|WP_119808214.1|1566783_1568172_-|ISNCY-family-transposase
MDEQRKYEVIKGLVDHPDTANKDRAALILGCTKRHINRMIQGYIKDGKAFFIHGNRGKKPATTICPDIRSQVLDLYRTKYYEANFEHFTELLKKHEGISISSSSVMSILESEYILSPKATKAKRRRIKQTLRAKKEAATSKRELSQIQANLVAVEDAHSRRPRCAYFGELLQMDATPYEWVPGQIWHLHLAIDDASGVVTGAWFDTQETLNGYYHVFEQILTDYGIPYKFLTDKRTVFTYKKKGALSDDKDTYTQFAYACKQLGTQLESSSVPQAKGRIERLNQTLQSRLPIEFRLAGVTDIHKANEFIYHYIKEFNEKFALPLYGIKSVFETQPSKEKINLTLAVLTERTVDAGHAIQFEKKFYKMIDNKGLQTHYRKGTKVMLIKAFDRSMFVCVNDKDIYALEEIPAHEHKSKDLDADYKQPKPRKPYIPPMNHPWRLDAFNKFAHSQPHRIEEDIKSA
>NZ_LR699010.1|WP_111524482.1|1568869_1569208_-|ribosome-silencing-factor
MELKEIVKKIYNIIEEKKGEDIKVIDIAKVSTIADYFIIASANNINQVQAISDEIDFILGKEGIMPKAIEGNKNASWMLLDYNDIVVHIFLREDRAFYDLDRIWRDGKEIEM
>NZ_LR699010.1|WP_111524483.1|1569208_1569802_-|HD-domain-containing-protein
MFDFSRERIDIIKADLKEKLPKKRYEHTLGVAYTSAALAMRYGEDIIKAELSGILHDIAKAKKLPKLKELMIGFDDPYTDAGYVEMVSDKAPQILHAIYAPYLAKKNYNIEDKDILSAIRWHTTGKKDMSILEKIVFVADYIEPNRKQLPSLDEIRTLAFQDITKAVERIAMSTIEFLNDQDVYIDRYIYELISDEV

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Crispr_ID: NZ_LR699010_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_9

1568560-1568707

TypeIII

Consensus_repeat	Method
GCCCTCTCACGGCGCAAACCCGGGTTCGATTCCCGGATTGGTCATCAAAA	CRISPRCasFinder

1 spacers

csx1,csx20,cas10

The CRISPR arrays of NZ_LR699010_9

>merge|NZ_LR699010|9|1568560-1568707|CRISPRCasFinder
GCCCTCTCACGGCGCAAACCCGGGTTCGATTCCCGGATTGGTCATCAAAAAGTTAATATCCGATTATTTCGGCCAATTGGTCAAGCGGCTAAGACGGTGCCCTCTCACGGCACAAACCCGGGTTCGATTCCCGGATTGGTCATCAAAA

>NZ_LR699010|9|9|1568560-1568707|CRISPRCasFinder
GCCCTCTCACGGCGCAAACCCGGGTTCGATTCCCGGATTGGTCATCAAAA	AGTTAATATCCGATTATTTCGGCCAATTGGTCAAGCGGCTAAGACGGT
GCCCTCTCACGGCACAAACCCGGGTTCGATTCCCGGATTGGTCATCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111524485.1\|1570404_1570701_-\|ribosome-assembly-RNA-binding-protein-YhbY	unknown	unknown	gnl\|CDD\|376702
NZ_LR699010.1\|WP_111526100.1\|1565465_1566230_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_LR699010.1\|WP_119808267.1\|1559308_1561063_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_LR699010.1\|WP_111526099.1\|1564477_1565482_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378117
NZ_LR699010.1\|WP_111526031.1\|1555215_1556952_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NZ_LR699010.1\|WP_111524486.1\|1570712_1571990_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237046
NZ_LR699010.1\|WP_111524487.1\|1572342_1572660_-\|ribosomal-processing-cysteine-protease-Prp	unknown	unknown	gnl\|CDD\|381747
NZ_LR699010.1\|WP_111526097.1\|1563176_1563581_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_007592302.1\|1572665_1572974_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_LR699010.1\|WP_111524483.1\|1569208_1569802_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NZ_LR699010.1\|WP_111524488.1\|1573719_1574169_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_LR699010.1\|WP_119808214.1\|1566783_1568172_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_LR699010.1\|WP_111524482.1\|1568869_1569208_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779
NZ_LR699010.1\|WP_007592297.1\|1572051_1572342_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_LR699010.1\|WP_111524558.1\|1573082_1573490_-\|sporulation-protein	unknown	unknown	gnl\|CDD\|378210
NZ_LR699010.1\|WP_111524484.1\|1569794_1570403_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NZ_LR699010.1\|WP_111526102.1\|1561250_1562756_-\|hypothetical-protein	csx1	pfam09455_csx1_CAS-III	unknown
NZ_LR699010.1\|WP_111526030.1\|1557006_1557363_-\|hypothetical-protein	csx20	cls000118_csx20_CAS-I:CAS-III	unknown
NZ_LR699010.1\|WP_111526101.1\|1566219_1566525_-\|thiamine-binding-protein	unknown	unknown	gnl\|CDD\|376658
NZ_LR699010.1\|WP_111526098.1\|1563723_1564497_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111524485.1\|1570404_1570701_-\|ribosome-assembly-RNA-binding-protein-YhbY	gnl\|CDD\|376702	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localizes to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome.	6.37121e-33
NZ_LR699010.1\|WP_119808267.1\|1559308_1561063_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	9.84216e-27
NZ_LR699010.1\|WP_111526099.1\|1564477_1565482_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|378117	pfam09084, NMT1, NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	2.09509e-78
NZ_LR699010.1\|WP_111524558.1\|1573082_1573490_-\|sporulation-protein	gnl\|CDD\|378210	pfam09579, Spore_YtfJ, Sporulation protein YtfJ (Spore_YtfJ). Proteins in this family are encoded by bacterial genomes if, and only if, the species is capable of endospore formation. YtfJ was confirmed in spores of B. subtilis; it appears to be expressed in the forespore under control of SigF.	2.3764e-25
NZ_LR699010.1\|WP_111524487.1\|1572342_1572660_-\|ribosomal-processing-cysteine-protease-Prp	gnl\|CDD\|381747	cd16332, Prp-like, ribosomal-processing cysteine protease Prp and similar proteins. This model represents a family of cysteine proteases that include members found to cleave the N-terminus extension of ribosomal subunit L27 in eubacteria. Proteins in this family are distinguished by a pair of invariant histidine and cysteine residues with conserved spacing that form the classic catalytic dyad of a cysteine protease. Dependence of Staphylococcus aureus on L27 cleavage by Prp makes the enzyme a target for antibiotic development.	3.76418e-34
NZ_LR699010.1\|WP_111524486.1\|1570712_1571990_-\|GTPase-ObgE	gnl\|CDD\|237046	PRK12297, obgE, GTPase CgtA; Reviewed.	0
NZ_LR699010.1\|WP_007592302.1\|1572665_1572974_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	9.38693e-49
NZ_LR699010.1\|WP_111524483.1\|1569208_1569802_-\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	5.30821e-46
NZ_LR699010.1\|WP_111524488.1\|1573719_1574169_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	7.58853e-46
NZ_LR699010.1\|WP_119808214.1\|1566783_1568172_-\|ISNCY-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.05276e-08
NZ_LR699010.1\|WP_111524482.1\|1568869_1569208_-\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	2.39256e-43
NZ_LR699010.1\|WP_007592297.1\|1572051_1572342_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.74882e-55
NZ_LR699010.1\|WP_111524484.1\|1569794_1570403_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	3.67741e-72
NZ_LR699010.1\|WP_111526100.1\|1565465_1566230_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.61142e-65
NZ_LR699010.1\|WP_111526101.1\|1566219_1566525_-\|thiamine-binding-protein	gnl\|CDD\|376658	pfam01910, Thiamine_BP, Thiamine-binding protein. The crystal structure of two of these members shows that this domain has a ferredoxin like fold and is likely to exists as at least homodimers. Sulphate ions are are located at the dimer interfaces, which are thought to confer additional stability. Although the function of this domain remains to be identified, its structure suggests a role in protein-protein interactions possibly regulated by the binding of small-molecule ligands. Solution of the structure of the hyperthermophilic anaerobic Thermotoga maritima sequence, UniProtKB:Q9WYV6, shows that this has a beta-alpha-beta-beta-alpha-beta ferredoxin-like fold and assembles as a homotetramer. It was possible to identify a pocket in each monmer that bound an unidentified ligand. It was also found that it bound charged thiamine though not hydroxymethyl pyrimidine. It is proposed that it is transporting charged thiamine around the cytoplasm. Under oxidative conditions this bacterium is under stress, and the transcriiptional unit within which this protein is expressed is up-regulated in these conditions, suggesting that the chelation of cytoplasmic thaimine is part of the response mechanism to such oxidatvie stress, which is mediated by this family.	7.94549e-28
NZ_LR699010.1\|WP_111526098.1\|1563723_1564497_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.4826e-97

>NZ_LR699010.1|WP_119808214.1|1566783_1568172_-|ISNCY-family-transposase
MDEQRKYEVIKGLVDHPDTANKDRAALILGCTKRHINRMIQGYIKDGKAFFIHGNRGKKPATTICPDIRSQVLDLYRTKYYEANFEHFTELLKKHEGISISSSSVMSILESEYILSPKATKAKRRRIKQTLRAKKEAATSKRELSQIQANLVAVEDAHSRRPRCAYFGELLQMDATPYEWVPGQIWHLHLAIDDASGVVTGAWFDTQETLNGYYHVFEQILTDYGIPYKFLTDKRTVFTYKKKGALSDDKDTYTQFAYACKQLGTQLESSSVPQAKGRIERLNQTLQSRLPIEFRLAGVTDIHKANEFIYHYIKEFNEKFALPLYGIKSVFETQPSKEKINLTLAVLTERTVDAGHAIQFEKKFYKMIDNKGLQTHYRKGTKVMLIKAFDRSMFVCVNDKDIYALEEIPAHEHKSKDLDADYKQPKPRKPYIPPMNHPWRLDAFNKFAHSQPHRIEEDIKSA
>NZ_LR699010.1|WP_111526101.1|1566219_1566525_-|thiamine-binding-protein
MNASVAIQTLPEVYDNEEIVRIVDEVIAYIKSTGLKYYVGPFETTIEGDYDELMDIIKECQHVAIRAGAPGVMAYIKVSFRPDGDLLTIDRKVTKHHLDEK
>NZ_LR699010.1|WP_111526100.1|1565465_1566230_-|ABC-transporter-permease
MRNKRDNIYPITFGIVFLLLWQIFCTLQIIPVYLMPSPLQIAKAVIGDFPLLMYHLLYTLSESIIGLFAGVVLGLLFALVMDRFARVYKTFYPIIIISQTIPTIAIAPLLVLWFGYDLLPKVILIVLVTFFPITIGVLESFKSTDRDEINLLKSMGASEFDIYRYIKLPSSMGKFFAALKISASYSVVGGVISEWLGGFRGLGVYMTRVRKAYAFDKMFAVIIIISILSLLLLRAVDLLQKVSMPWEERREKNN
>NZ_LR699010.1|WP_111526099.1|1564477_1565482_-|ABC-transporter-substrate-binding-protein
MRKTIRKILAVVGLGALVLASTACGAKKPANTDSKKLTLVLDWTPNTNHTGFYVALEKGYYKDAGIELEIVQPPEDGAEVLVASGKANFGISFQDTMAGALSGDNPLPIKAVAAITQHNTSGIMSRRGDGITSPKGLEGKNYATWDMPIEKAILKNVVEKDGGDFGKVNLIPSTVTDEVSALSSNQVDAIWVYYGWAGIAANVKGFGFDYFAFKDINPTFDYYTPVLFTNDDMIKNDKETVKSFIEATKKGYEYAAGNPKESAEILLKYAPEIDKELAMASQEYLSTCYIDNDIPWGYIDATRWGDFYRWLNENNLLESPIDEGAGLDNEFITK
>NZ_LR699010.1|WP_111526098.1|1563723_1564497_-|ABC-transporter-ATP-binding-protein
MNLSQNSENILEVSNVSFGYDERNIISNINLTLRENELISLLGVSGSGKSTLFNIISGLLKPNNGQVIYRGKDITGKTGLISYSFQKDLLLPYMTIEENVSLPLLIKKEKKTDAIKKANEMLREFKLDAYASKYPKELSGGMRQRIALIRTYLFSKDVSLLDEPFSALDAITKDEMHEWYMNMRNKYNISTIFITHDVDEAVLLSDRIYILGDGTIKSELKIEGKSRDNSFKLSKEFLDYKKEVLSCLESSNVLIKS
>NZ_LR699010.1|WP_111526097.1|1563176_1563581_-|hypothetical-protein
MKSDFLDYVIYKIILSIPIRQETEAEVDEYVICDNEYLRATFLGIGDSFGYVTLDVKLENKTDGEITVIPMDSSVDDVMVQFLSGLPATMQGHKSMNQAWLIGSEPQNNIEFKLWIVDENWSDLYKTETIRLVR
>NZ_LR699010.1|WP_111526102.1|1561250_1562756_-|hypothetical-protein
MDKGDYFRGIGNDGKDVIINDCRSQGESVVRYFLEIMPSDEEVDIVMLCSRKTLEMDERNGTYKKGNIYSAVSYLKERIERSPEKGKHKINYKIIKLYKNKLPNEHRLQEADDIDPSIPLMPANKEEESFFPEDEIGAISRAVEYIHYKKLQEKKTFKLYIDTHGGLRDIVFSMSAVNSLLYVGEAIRPKLISGINMASARIENQSEKFNVFNFFSGINEFLHFGNADILSEYVDIKSDFSYLTGADPSVQKIAKQIVKDMQKISYGVQMSDPRAFMEGLKELGNEFEKSSESNLKNTPFGILEQKIKDEYGSLLTNPNILDLIIWCVEHGLIQQALTFVESMLPYYYWDKKLLYFDKEQLKRFDEDENMAFNRYISRFRFNQQKTNKEMNFFAYHLLENTGEYEVTWARPRSTTLRYYHPESAAKGEDLEAKSRWIYNDNYGNVKLEDFRNKVLPLLQSHRILKIIRSSFNHGNLEYRISLPKLKRFILNYISELKKAKK
>NZ_LR699010.1|WP_119808267.1|1559308_1561063_-|IS1182-family-transposase
MLTVNYYNDFFEIGQQKINFSFYELSLPDDDPVYTLKKVMEDLDFSGLLANCSDKGRTGYNPIMMYAVITYANMRGIRSIDRIVDLCERDIAFIWLTQGRKPKRDAFYEFKSKKLTSDILDDLNYQFMRRLQKEGFVTLKELFIDGTKIEANANRYTFVWRGSINYHLAGLLDSIDKLYSDYNSFLQDNGFGEKYELGNAQMFVIDGIDRVRDIIEKNRKRKITKHKKLSNNRIIEIDNCSPIEILKLQKNLMTIADGEGIVFVNGKGKRKPKLQQLYEELEHCGQRLMHYKECFEIMGKDRNSYSKTDLEATFMRMKEDHMLNGQLKPAYNVQIAVENYFIVHSYVSNDRTDYNALIPVLEKHKEAFGEVLEEVTADSGYCSEKNLLYLKENKIDSYIKLQDHEKRKTRAYSKDIGKYYNMKTMVFEDEQVYICHDGRELRHINTEKKKQNGYTQTYEVYGCSDCSGCEHKSKCLYKYNPDKDVDKNKVMKINEVWEELREKSHANIQSEKGILKRQTRSIQTEGHFGDIKENEDFRRFNYRSSDKVYKEFMLFAIGRNINKYHRFLYAKLKKFEGKPQEKTA
>NZ_LR699010.1|WP_111526030.1|1557006_1557363_-|hypothetical-protein
MINFTNHPYEMWDDAQKRAASEFGDIKEIPFPAVDPSATEEDLDNLAEEYREKVLALKDPMILLQGEFTLSFRLVQLLKKDGLKVVAACSERRVHEWRDDDGKYHKEMLFEFVQFRRY
>NZ_LR699010.1|WP_111526031.1|1555215_1556952_-|hypothetical-protein
MEEKGYVLCMYDIRGKQEFIYRSSKLKEIVGASLIIRDLFEDYLYDAAKTCRDNINKESKVKEEYKDEDAIFRYDPNKEKLDKFSFKQFEERMDGNQYIGEIVYDGGGNFLLLYKDENAMKKTTEIFTKKILKEIGTLKVVATYIGDISKDNYHSDDLKNPGDYERLYQKHRLRESTALYTLPYGSLPIVQTEPTSSLPLTYMYDNAPADSSASEKKYVKYSTETNAKLKKYWKEASNPGYEMGETVLDNIVAETKGEDSMLAIFYIDGNAMGAKVQACLNGKKNYDDCVNLLREFSKKIQKTFIDDRKVDMLKTDETKSSDKKNYKSRILIGAGDEMTIICKADESYETIKEYLSKIPSPYSSCAGAAIFHSHTPFADAYRIAEQCCEDTCKNYMKKNGLTLANLMDFEYCQGGIGFSLKDIREENGDDNNSRPWLVESEVEEKVSYHYKPVKNKNLPSWEKGKTEEERSNKEKINKLKDLLSLQKVEDFHTNLSLLGRTNIKGLAIPVSLSETALRTELRRIIAHMSKDKKEKMGFKSDADIVEYFVENKKLLKDLVRMYDMGYGKAKEGEEENAK
>NZ_LR699010.1|WP_111524482.1|1568869_1569208_-|ribosome-silencing-factor
MELKEIVKKIYNIIEEKKGEDIKVIDIAKVSTIADYFIIASANNINQVQAISDEIDFILGKEGIMPKAIEGNKNASWMLLDYNDIVVHIFLREDRAFYDLDRIWRDGKEIEM
>NZ_LR699010.1|WP_111524483.1|1569208_1569802_-|HD-domain-containing-protein
MFDFSRERIDIIKADLKEKLPKKRYEHTLGVAYTSAALAMRYGEDIIKAELSGILHDIAKAKKLPKLKELMIGFDDPYTDAGYVEMVSDKAPQILHAIYAPYLAKKNYNIEDKDILSAIRWHTTGKKDMSILEKIVFVADYIEPNRKQLPSLDEIRTLAFQDITKAVERIAMSTIEFLNDQDVYIDRYIYELISDEV
>NZ_LR699010.1|WP_111524484.1|1569794_1570403_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MRRIGILGGTFDPIHLGHLILAEKAKDKCGLDEVWFMPAKTPPHKLDKRVSEFSDRKAMIDLAIEEYKYFYCSDFENTLEGNSYTYNTLERLQSEYIDDEFYFIMGADSFYEIESWRNPDIILRIVKLIVASRDYSNENLTLKKHFEYLKSKYEIKGIYFLDTMDIDISSTKIRELLKLGDDIKNYVPESVCRYIKEKKVYV
>NZ_LR699010.1|WP_111524485.1|1570404_1570701_-|ribosome-assembly-RNA-binding-protein-YhbY
MNSRQRAYLKGLAMNLDPIMQIGKASLTDESVAAVAEAMEPRELIKISVLKNCADDPKIIANEIANLTRSEVVQVIGKKIILYKQADEPKNRKIKLPK
>NZ_LR699010.1|WP_111524486.1|1570712_1571990_-|GTPase-ObgE
MFADSAKIFIKSGKGGDGHVSFRRELFVAAGGPDGGDGGKGGDIIFEVDEGLNTLTDFRMKRKYVAGDGEPGGKRKCHGADAKSLTLKVPEGTVIKDFETGKVIADMSGENKREVILRGGKGGFGNMNFATATMQVPKFAKPGQPGKEMFVLLELKVIADVGLVGFPNVGKSTLLSRVSNAKPKIANYHFTTLDPHLGVVDVKGAGGFVMADIPGLIEGASEGVGLGHDFLRHIERTKVLVHVVDAASTEGRDPVEDIKTIMNELKSYDESLLERPQLIAANKIDAIYDEENNEIERIKAAFPDIKVFPISGVSGKGIQELLYELVNVLSTIDRTVKVFEKEFEIDYSSDKNLPFTVEIDEDGVFVVEGPRIEKMLGYTNLDSEKGFDFFQKFLKTSGVLEKLEEAGIVDGNTVRMYGHEFDYYK
>NZ_LR699010.1|WP_007592297.1|1572051_1572342_-|50S-ribosomal-protein-L27
MLKMNLQLFAHKKGVGSTKNGRDSESKRLGAKRADGQFVLAGNILYRQRGTKIHPGLNVGRGGDDTLFATVDGVVRFERKGRDKKQVSVYPRAIAE
>NZ_LR699010.1|WP_111524487.1|1572342_1572660_-|ribosomal-processing-cysteine-protease-Prp
MINVIAFAKDGKYTGLKVSGHASFGEEGKDIVCAAVSVLTLNLSNSIEHFCDDDFIVDSDDGFFHLTLQDRSEKSGVLLDSCILGLMDIGEDYRDFIKINLQEVK
>NZ_LR699010.1|WP_007592302.1|1572665_1572974_-|50S-ribosomal-protein-L21
MYAIIATGGKQYKVSEGDIIRVEKLGKADGEAVTFDQVLALNDGELKVGTPTVTGASVSASVLKEGKAKKVIVYKYKPKKGHHKKNGHRQQFTEVKIEKINA
>NZ_LR699010.1|WP_111524558.1|1573082_1573490_-|sporulation-protein
MEKKSQFFDNAEAIFNGMNTFLTTKTVVGEPIVVGETTIIPLVDVSCGMAAGTFEESSKSKGGGGMSAKISPTAMLIIQDGRTKVVNIKNQDAISKILDMVPDLINKITNKADVDKEATKQAETILNESESKYID
>NZ_LR699010.1|WP_111524488.1|1573719_1574169_+|Rrf2-family-transcriptional-regulator
MKISTRGRYALKMMVEFAINSDSPTKVNQVSKSYGISEKYLEQIVSILSKAKLVKSIRGAQGGYLLIKPVEEYTVGEILRLTEGSLSPVDCLDGHGFCVHSDFCVTQNLFKKVEDAINNVVDNISLQDLVEDELDIRRREKELESINPI

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Crispr_ID: NZ_LR699010_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR699010_10

2271630-2272032

TypeIII

Consensus_repeat	Method
GTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC	CRISPRCasFinder
GTCCCCTTATCGGGGTTATCTTTTGTAAAC	CRT
AGTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC	PILER-CR

5 spacers

cas2,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,csm6

The CRISPR arrays of NZ_LR699010_10

>merge|NZ_LR699010|10|2271630-2272032|CRISPRCasFinder,CRT,PILER-CR
TAAATAGTCCCCTTATCGGGGTTAGTTTCTGTAAACGGAAGCCCTTTCCAACGGGGAGGCGGTTGCGGCTAGTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAACCTTAATACCCATTTTTCTCATAGTGATTATTGGTTTGAGTTTCTGTCCCCTTATCGGGGTTATCTTTTGTAAACGAATTGACATAGAGCTTGTGTTGCGAACAAGTGAAAGAGTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAACGAAGGAGAATTTTTATGTTTAACGGCAATACAGCATTCGTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAACGATAATTTCAGAACAGAAACCATTAAGTTTGAATTTGAGTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC

>NZ_LR699010|10|10|2271630-2272032|CRISPRCasFinder
TAAATAGTCCCCTTATCGGGGTTAGTTTCTGTAAAC	GGAAGCCCTTTCCAACGGGGAGGCGGTTGCGGCTA
GTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC	CTTAATACCCATTTTTCTCATAGTGATTATTGGTTTGA
GTTTCTGTCCCCTTATCGGGGTTATCTTTTGTAAAC	GAATTGACATAGAGCTTGTGTTGCGAACAAGTGAAAGA
GTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC	GAAGGAGAATTTTTATGTTTAACGGCAATACAGCATTC
GTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC	GATAATTTCAGAACAGAAACCATTAAGTTTGAATTTGA
GTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC

>NZ_LR699010|10|4|2271636-2272032|CRT
GTCCCCTTATCGGGGTTAGTTTCTGTAAAC	GGAAGCCCTTTCCAACGGGGAGGCGGTTGCGGCTAGTTTCC
GTCCCCTTATCGGGGTTATCTTTTGTAAAC	CTTAATACCCATTTTTCTCATAGTGATTATTGGTTTGAGTTTCT
GTCCCCTTATCGGGGTTATCTTTTGTAAAC	GAATTGACATAGAGCTTGTGTTGCGAACAAGTGAAAGAGTTTCC
GTCCCCTTATCGGGGTTATCTTTTGTAAAC	GAAGGAGAATTTTTATGTTTAACGGCAATACAGCATTCGTTTCC
GTCCCCTTATCGGGGTTATCTTTTGTAAAC	GATAATTTCAGAACAGAAACCATTAAGTTTGAATTTGAGTTTCC
GTCCCCTTATCGGGGTTATCTTTTGTAAAC

>NZ_LR699010|10|6|2271700-2272032|PILER-CR
AGTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC	CTTAATACCCATTTTTCTCATAGTGATTATTGGTTTG
AGTTTCTGTCCCCTTATCGGGGTTATCTTTTGTAAAC	GAATTGACATAGAGCTTGTGTTGCGAACAAGTGAAAG
AGTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC	GAAGGAGAATTTTTATGTTTAACGGCAATACAGCATT
CGTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC	GATAATTTCAGAACAGAAACCATTAAGTTTGAATTTG
AGTTTCCGTCCCCTTATCGGGGTTATCTTTTGTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR699010.1\|WP_111524065.1\|2264261_2264870_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR699010.1\|WP_111524066.1\|2263696_2264260_-\|hemerythrin-domain-containing-protein	unknown	unknown	gnl\|CDD\|226454
NZ_LR699010.1\|WP_111524052.1\|2281090_2281822_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NZ_LR699010.1\|WP_111524067.1\|2263097_2263484_-\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_LR699010.1\|WP_111524051.1\|2281815_2283204_-\|CRISPR-associated-protein-Csm6	csm6	cd09746_csm6_CAS-III-A	gnl\|CDD\|312974
NZ_LR699010.1\|WP_111524054.1\|2278440_2278890_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_LR699010.1\|WP_111524063.1\|2266116_2267697_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|378796
NZ_LR699010.1\|WP_111524061.1\|2269511_2270435_-\|adenylylsulfate-kinase	unknown	unknown	gnl\|CDD\|366715
NZ_LR699010.1\|WP_111524056.1\|2276809_2277751_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NZ_LR699010.1\|WP_111524060.1\|2270572_2271484_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|273806
NZ_LR699010.1\|WP_111524057.1\|2275670_2276810_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NZ_LR699010.1\|WP_111524058.1\|2274514_2274814_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_LR699010.1\|WP_111524053.1\|2278890_2281098_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_LR699010.1\|WP_111524894.1\|2260455_2261004_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LR699010.1\|WP_111524064.1\|2264891_2265236_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_LR699010.1\|WP_111524050.1\|2283406_2284039_-\|EcsC-family-protein	unknown	unknown	gnl\|CDD\|378945
NZ_LR699010.1\|WP_119808307.1\|2261392_2262676_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225382
NZ_LR699010.1\|WP_111524055.1\|2277752_2278430_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_LR699010.1\|WP_111524059.1\|2272325_2274482_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|274159
NZ_LR699010.1\|WP_111524062.1\|2267786_2269502_-\|glycosidase	unknown	unknown	gnl\|CDD\|200492

Protein	Function_ID	Function_description	E-value
NZ_LR699010.1\|WP_111524066.1\|2263696_2264260_-\|hemerythrin-domain-containing-protein	gnl\|CDD\|226454	COG3945, COG3945, Uncharacterized conserved protein [Function unknown].	9.0713e-32
NZ_LR699010.1\|WP_111524052.1\|2281090_2281822_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.3228e-20
NZ_LR699010.1\|WP_111524067.1\|2263097_2263484_-\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	3.05886e-22
NZ_LR699010.1\|WP_111524051.1\|2281815_2283204_-\|CRISPR-associated-protein-Csm6	gnl\|CDD\|312974	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	1.23471e-95
NZ_LR699010.1\|WP_111524054.1\|2278440_2278890_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	6.14216e-29
NZ_LR699010.1\|WP_111524063.1\|2266116_2267697_+\|VWA-domain-containing-protein	gnl\|CDD\|378796	pfam12034, DUF3520, Domain of unknown function (DUF3520). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 180 amino acids in length. This domain is found associated with pfam00092.	3.85783e-70
NZ_LR699010.1\|WP_111524061.1\|2269511_2270435_-\|adenylylsulfate-kinase	gnl\|CDD\|366715	pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that catalyzes the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.	0.000687517
NZ_LR699010.1\|WP_111524056.1\|2276809_2277751_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	5.12774e-36
NZ_LR699010.1\|WP_111524060.1\|2270572_2271484_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	2.90708e-06
NZ_LR699010.1\|WP_111524057.1\|2275670_2276810_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.17916e-17
NZ_LR699010.1\|WP_111524058.1\|2274514_2274814_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.12502e-16
NZ_LR699010.1\|WP_111524053.1\|2278890_2281098_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	2.98969e-161
NZ_LR699010.1\|WP_111524894.1\|2260455_2261004_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.27612e-17
NZ_LR699010.1\|WP_111524064.1\|2264891_2265236_-\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	4.61789e-35
NZ_LR699010.1\|WP_111524050.1\|2283406_2284039_-\|EcsC-family-protein	gnl\|CDD\|378945	pfam12787, EcsC, EcsC protein family. Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.	0.000333006
NZ_LR699010.1\|WP_119808307.1\|2261392_2262676_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.54865e-18
NZ_LR699010.1\|WP_111524055.1\|2277752_2278430_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.39152e-68
NZ_LR699010.1\|WP_111524059.1\|2272325_2274482_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|274159	TIGR02487, Anaerobic_Ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	6.28317e-167
NZ_LR699010.1\|WP_111524062.1\|2267786_2269502_-\|glycosidase	gnl\|CDD\|200492	cd11355, AmyAc_Sucrose_phosphorylase, Alpha amylase catalytic domain found in sucrose phosphorylase (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase). Sucrose phosphorylase is a bacterial enzyme that catalyzes the phosphorolysis of sucrose to yield glucose-1-phosphate and fructose. These enzymes do not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	8.85179e-87

>NZ_LR699010.1|WP_111524060.1|2270572_2271484_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKGNMEKDITQKTLEKYNDVFADIINVLLFNGEKIVTEDSLIDALPGSTLKMDGRIRTQYRDIAKYWHNSKIKLSMFGLENQTKPEKRMPLRVFGYDGTEYVRQAKKENNKEVLYPVITLVLYFGYNSRWNQPKSLFELLEIDERIKPYVNDFKMNIFEIAYLDREKIDMFKSDFWILADYLYQMRVNKNYVAGDTVIEHVDELLMLMSAMTNDYRFEETINEVKGKEHLTMCEVLDRVEARGIEKGIEKGIEKGREEGIKEGIKKGTINVLISLVKDGILSISDAAKRADMSVAEFKKYTDR
>NZ_LR699010.1|WP_111524061.1|2269511_2270435_-|adenylylsulfate-kinase
MQEFKNWKPPVLPKEIEQADVPGSKVVITEYHIDRAGRIFPDLLDEIEKVKSKNGNGKVVVSVSGCSGVGKSGIAAVLSYYLNDIGIGSYILGGDNYPRRIPEYNDAERLHIFREGGLKGLVKDGEYNKERFQIVHKLQEEGNDADSENIKKYPWYKSYINGGRNALKEYLGTGNELAFKEVEDVVDQFKSGAEKIWLKRMGRSNTQIWYDDVDFKDVGVLLIEWTHGNSDCFNGVDIPILIHNTPAETLKYRLLRNRDCGIDSPFTTMVLDIEQESLVNQAHKAKIIITPNGDRLSYEEYCKYIGM
>NZ_LR699010.1|WP_111524062.1|2267786_2269502_-|glycosidase
MNKNNNGPMLNAYPDSLGGNLSDIANFLSKNELKDVFSSFYILPSLFHTDLDRGFSVIDYSLNELFAKKEDLKKLDELGIDLKLDFILNHASVLSKQFQDIIKNGEKSKYRDFFIDWNKFWDGCGEMTEAGYIQPKPELIKDMFFRKPGLPILMVRFPDGKEVPYWNTFYQEVRYPSLDAVDIRDITGVQYSIAEGLASLLNESLIEGKSPEKILNESNIYSNKLSDDQRKELCEKLESERKYLGQMDLNIKSPLVWEFYDNTLKTLVDYGAKIVRLDAFAYAPKEVGEKNFLNEPATWDVLTKVRELADKYNVRLLPEIHASYEEKIYEKIADKGYMTYDFFLPGLIIDAFEQQSGEVLKKWADELVEKNIQVVNMLGCHDGIPLLDLKGLISEERIQSIIDTVVKRGGYVKDLHGQKNVYYQVNATYYSALGEEDKRMLLARAIQIFMPGKPQVWYLDLFAGKNDHEAVKRAGAGGHKEINRTNLTLEEIEAGLQREVVQKQLEMLRFRNTFSVFSNYSEFTMKCDGSKIFIEWKNEDSSAVLEGDLTSFAFNIIGEKDGKVIYKENFL
>NZ_LR699010.1|WP_111524063.1|2266116_2267697_+|VWA-domain-containing-protein
MKKKSIYCRIGARVMILSLSILFTGCGQRYDKTSNDGAEYATGKTVEVSDYYIPQVAYNTEEYNAIDESNFKAVATSTLSTFAADVDTASYANIRRFVNSGELPPADAVRIEEMLNYFHYDYPQPKDGEPFSVTTEISACPWNPDTKLMMVGMQAKQVDELEKKPSNLVFLIDVSGSMDEPDKLPLVKNAFLLLCEQLKENDTVSIVTYAGYDQVVLEGAKGSDSREIMAAIEDLEAGGSTAGADGIKTAYEIARKYFKADGNNRVILATDGDLNVGITSEGELTRLIKKEKESGVFLSVLGFGTENIKDNKMEALADNGNGNYSYIDSRFEAKKVLSEELGANFFTVAKDVKFQLEFNPKFIKGYRLIGYENRIMDDEDFKDDTKDGGEIGSGHRVTVLYEIVDKDSPIEIGSDLKYQNNVETDSDDLLNIAVRYKEPDSDTSKELSYPVTSDSIKENMSDNMKFAAAIVETGMLLRDSEFKGSSSYDNVLSMLDSIPDVKNDTNKLEFLLLVKKISTLPAQMSK
>NZ_LR699010.1|WP_111524064.1|2264891_2265236_-|cupin-domain-containing-protein
MDKFLKNINHEEVLKLADLVQATDGQVVSKTLAQNKYVSITVFAFSKGEEISTHESDGDALVTVLEGTGKFIVDGKEYILNAGESVVMPSRKPHSVHAIESFKMQLTVVFPLER
>NZ_LR699010.1|WP_111524065.1|2264261_2264870_-|hypothetical-protein
MSAILGPIHHWLFRKIKIQNDLTNTLITTAKDKGLNTAVLADIDEKFGSLPEGDLGNVIDPTNIHGWLQDKIAIVERRLAYVAKNLTEGNPDAIGIICESARTFGKENAIGSGASPVDGFEYYENTFVSGMPCDGVNMVVNEDSDELMWQETVDIHKQYWDEVGADVSLFYEIRNAMIEGVFDGSGLTYYALGNGTYKLVRE
>NZ_LR699010.1|WP_111524066.1|2263696_2264260_-|hemerythrin-domain-containing-protein
MYGIEILVDEHKNIIEFCKSLKSMCCSIIEGSEVDTKLVRECVDFGKTYADHLHHGKEEKILFKIMMEKLGPVADKLIRNGMLVEHDLGRLHMNELLEAADRYEKDPSTQNKLDIIANAAGYATLLNRHIGKEDEVVYTFAERALSAEDKERVDVETKEFDNDPENKANVAKYLEWFEGFRRKYPAR
>NZ_LR699010.1|WP_111524067.1|2263097_2263484_-|YbgA-family-protein
MNYKSIKKESEELWAKNKYYVLSKSHKVYLEIRAYLREKEPDVLWVNKKIQEARDMKESKKDFSNAVLHIWGYFKKEASTMEKRILFDILNEYIKGENNREAVIEYLNTLLKKYPNEYLEKSTLLTRE
>NZ_LR699010.1|WP_119808307.1|2261392_2262676_+|helix-turn-helix-domain-containing-protein
MKSLNSFYHLTLEDRHIILAGITNSSTKTAIAKTIGKNKSTVCKEIKLHRKLTHRCSMPLECNNYKKCPFGRKCITECILYSPFYCKRRDRSPGACNGCSNRRHCRFDKYDYSPQDAWLDYRYTLVDSRQGVNLTAKQAKDLANTIAPLLKQGLSPYQILASHPELGISEKTLYNYIEGEVFHEIAGITVLDLRRQVSRKPSKKKSKKFKKRADNKHLIGRTYNDYKIYIDDNPNALITQMDTVYNYETTGPFIQTFKFIPSGILFALYQTEKTSSAMKDGVNTLETILGKDVFRKYVNVLLTDRGSEFYAAKDMETDMDGSTRTRVFYCDPMQSGQKGSLENNHIQLRYILPKQTDLRSIGLTDQHSLNLVISHINSAPVEKFGGKSPLEVASFMYHDLYEKLMIFGIREIEKDRIILKPYLLKNR
>NZ_LR699010.1|WP_111524894.1|2260455_2261004_-|GNAT-family-N-acetyltransferase
MKYYKKIRLANNMFCIIRNATMDDAKSVLENTKNIREETDFLLSYPDEINFSVEEKEEFLEDKENSSFEIQICALVDDRIIGLAGISAVGSKDKVKHRAEFGISIEKAYHGKGIGTALTKACIECAKTAGYRQLELEVVAENKNAIALYKKFGFNEIGCNPRGFCSRYTGWQELISMLLVLD
>NZ_LR699010.1|WP_111524059.1|2272325_2274482_-|anaerobic-ribonucleoside-triphosphate-reductase
MENKFILLRRDGKELKYDKDEVWVKELIKIDAAMALAPIDDESVAQINNTFYKELISLSQKLGRNRFESKEWHSCIKNALSEYPEIADVFLYTTKEVNADIYEQICKQMSKIIYDGDRSNGSMDSSLVSSKRALIVDAVEKITYSNYHLTPEQREALKDGYIYIHDMGFRRDTINCCLFDMEKVLDGGFEMGEMWYDEPETLSEAFDVIASISMNAVAQIYGGFTIPQIDELLSKYAKKSYDVYYKEYIDVGINKEKADNLASNRLEMDFEKGFFSLEAKFNSLISPRGDYPFITISFGIGKDKYSQMATVAALKVRKGGHGKEGFKKPVLFPKLVFLYDKNLHGKGKELYYLFQNAIDCSSKVMYPEYLSLTGEKGIVSEVYKKYGKVISPMCCRAFLTKWFEKGGETPVDESDVPVFIGRFNIGVVSMNLPMILAKSRKTGEDFYSVLEYYLNIIRNIHKRTYKFLSEKKAYTNPLAFMQGGIYGGNLNRDDKIEPLLKSATASYGITALNELQYLYNCKSIVEDGKFALEVVKYINKRVLEYQAKDHIQYSVYGTPAESLCGKQVNSFREKYGEIENVSDRDYFSNSFHCHVSEDITQIEKQNYEFRFWDLFNGGKIQYVRVDVPYNIEALEAYVTHAMELGLYEGINISLAYCDNCGYQWNNRGSDRPDTCPRCGKKEMTMIDRMCGYIAFTKIHGKSRLNDAKMAEIRDRISM
>NZ_LR699010.1|WP_111524058.1|2274514_2274814_-|CRISPR-associated-endonuclease-Cas2
MKKEETREELKYRVLIIYDITEDKPRINLSKLLSSYGIRVQKSAFEANLNKKQYEKLIFELDRYVGREDSIRVYKMYEDSEVITYGKVDEAVFDEVIIV
>NZ_LR699010.1|WP_111524057.1|2275670_2276810_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MAKFLKKYNIELKTIGPVFIGSGYTINKKEALFKNDKVVIIDTRLMFDYFIKKNLLKKYQEYMLDTGKDLAVFFKDNNIDEKIYKNWNVKELSLGDTKGTDDGDVKGRGIERFVRDGNGKIYVPGSSLKGMLRTILTGAYIIQNSDCGISNKLSEAELGLGNNPSKKELDKTYKDSLSDIDIDIFHKNLFSDSNNRIDNKINDTLRGFMVSDSEYISDEDMCVCQKVDISLDGTEIAIPLYRECIKPGVTIRFSITVDSNFCDYDKEKIIKSIGCFYENYWNKVSKQFKKAPISNDKYTCFLGGGAGFESKTIIYSSFDRKKAVDFTSNILIVLFPDAKHDKDTDVSPRVVNCTKYNSNKYLFGACSLRKFEEEQMDFV
>NZ_LR699010.1|WP_111524056.1|2276809_2277751_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MNYKILKLEFTTAVHFGGGGLEKGQNVLNADTLFSVLFIEALKYGESDRLLDICKSGKLKISNAFPYIGKEYYLPKPIIRLDNDNDGDSIRKKALKKLRYIPLSKFESFINGKLNIEEESDSFGKKFGEFTLLEKVSMLTSGENDVNNLYAVEVFKYKKGSGLYLFIGFEDEKDFEMVKRLMNSISYTGIGGKISSGYGKYVLCEDTPNSNIVKKFEDIGDYKDIMSLSLCLPNEDELKKSLEDASYTVVKRSGFIASSKYADTYRKKKDLYMLEVGSVYKNIFEGDIYDVSGKNKGTHPVYRYGKPFFMGVR
>NZ_LR699010.1|WP_111524055.1|2277752_2278430_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MFGKLEISGKIESLTGLHIGGGSQFAAIGAVDSVVVKDIDEDFPMIPGSSLKGKLRSLLSRQLNDGGLSKDHNSDNEVIKRLFGHSDKNGPKTGRVYFSDIFISKESKERLKAESLDATEVKFENTISRLTGVANPRQIERAIKGIEYHMSLIYNIEDESEIEEDFNTLRLGFKLLKYDYLGAAGSRGYGRVDIKDFEVKPLIVNVDDGKVEKVVESCKNILKEV
>NZ_LR699010.1|WP_111524054.1|2278440_2278890_-|type-III-A-CRISPR-associated-protein-Csm2
MGGNNNNFTNNRGKSNTEKKRTPIDLNKENYVEQAEKVIQSLIDENGRNKILTTSKIRKLLSMVSDMYTKAKRLKTNTLDSEWLTKIQYFKMHTIYEAGRESTVKKFVEEAQIIEQIDSIKADKDRLILFCHYMEALVAYRKFLGGRDE
>NZ_LR699010.1|WP_111524053.1|2278890_2281098_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MNNDVKTKFIYDSILYYVNKIVASNNIDSENIYITKLADKISAALDRRKIQNDEFAFEEGGNLYSIFNILNGNSQSKRYDASVLYEDEKIKFAKDSVTNPSAEFYKTIKEKLSGKLENANVDMDFVNSILEILEQSMSYIPVYGAKDEKIDISVYEHIKQSIAIGSSIFEYLTEAKQLENQESLYNDPDDFYKEKVILLYSMDFSGIQSFIYGQYGKEDVLKNLRSRSFYLEILMENIIDELLKNLNLSRANLLYAGGGHAYFIFANTKNTKDLLEAFDTDIKACMQDMFGIDLYIGSGYSECSCNDLQNKPDGSYSNCFREVSAAVSQNKLSRYNAGQIIALNRGKNVDGERECKICHSSYNLNSNGVCSLCDGFAQLSRSILNREIFTVVSEKDRGILPIYKNGYLSAENIKRKEGEEYLKTNKNILIRAYSKNGVYKGKDYVKTIYVGDYHDAETLEKLVKGGVGIKRLGVLRGDIDNLGKAFVGGFEKSTQTLSKSAAFSRKLTQFFKYDINNILKNGEYKIPCFDSGVDENETRKIAIIYSGGDDVFVVGAWKDVLEFGIDLYKTLKEYTQGTLTISAGLGMYMPKYPISYMAEKTGELEDCSKKLDGKNAITLFDKDNSYHWDEFVDKVIGEKFAIISKFFSTVEDKGKSLLYNLLELFRNRDKKINLARMAYTLARMEPKGKVSEEEKDVYQIFKEKLYDWMFDDNDTKQAITAIYIYSYLIRNEEEK
>NZ_LR699010.1|WP_111524052.1|2281090_2281822_-|CRISPR-associated-endoribonuclease-Cas6
MLSSLRIELEGEIEKSRNDLLGSLFQGFIMKNIYKGYADILHMSTLHPYSQYVTRVDNKIIWTLNTLNIEAKENIADKIKQIEKVNIKYREKEYKITSIKEENISYKDLVKENYLRDGKRILKVKFLTPTSFKQDGRYVLFPSIRLIFQSLMMKFDKASTDMEVFSKDILETFENNIEICGYKLRSTAFHLDGTKVPAFIGEITVNIKGPKQLVNFANMLIAFGTYSGVGIKTGIGMGGIAFE
>NZ_LR699010.1|WP_111524051.1|2281815_2283204_-|CRISPR-associated-protein-Csm6
MNILFSPLGGNDPVSEKNFFDGSMIHICRYYDIDKVYLYMTKEIWEKHEKDNRYVFFINKLAEYKNKKIEYIIIDDKDCENVQVYDQFLFKFEKEINNIISSLSDEDRFFINISSGTPAMKNALVILQDLNEYDCKFIQVATPTKRMNENEHSNNPDWESMWEFNLELEINGENRCTENKCPSLSRLRKEEIIKKHIDEYDYRAALSVAEGMDKRSTGHYIDELARAVNRYNLDMKKVDADYKEGSIDMTPVKSGNARKIFEYALWLSTKLKRKEYIDFIRGITPIVVELFEVVLKGRGKLDINDYCKMGDNKVRMWDSSKVINKLPGRDDSIQDIVNKEYQLKNNYSNSEKKFELKMIYSEALLYLIKNIIDNTDLAETASNIRSVEANVRNLAAHDIVSLDEKNIEEKTEFTPEKIMGMIKKLFAYTSFGIKKEDWNSYEDMNQELKRRISEHREETTSC
>NZ_LR699010.1|WP_111524050.1|2283406_2284039_-|EcsC-family-protein
MENQIVKQEQGAKWLDTVYKQAVKGVGIGNTSVVSMAQDYMIKHKSKEEACKAMLKNQVIKCTSSGIITGIGGIVSLPFTLPVNVSTVLYMQMRMIACTAYMAGYEPSSDQTETLVLACLINVPITQLVKQVGVKASTKVATNVIKSVPGKALTKINQLIGFRFITKFGSKGVINLGKAVPFVGAGVGGAVDFFETRTIAKRAYDFFFEN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LR699010_2	2.3\|335888\|37\|NZ_LR699010\|CRISPRCasFinder	335888-335924	37	NC_012226	Brachyspira hyodysenteriae WA1 plasmid pBHWA1, complete sequence	10166-10202	10	0.73
NZ_LR699010_2	2.3\|335888\|37\|NZ_LR699010\|CRISPRCasFinder	335888-335924	37	NZ_CP019601	Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence	27722-27758	10	0.73

1. spacer 2.3|335888|37|NZ_LR699010|CRISPRCasFinder matches to NC_012226 (Brachyspira hyodysenteriae WA1 plasmid pBHWA1, complete sequence) position: , mismatch: 10, identity: 0.73

aaggat-----ataggaagtaattatcttttccttctataag	CRISPR spacer
-----ttcttattaaaaagtaattatctttactttctataag	Protospacer
     *      **..************** *.*********

2. spacer 2.3|335888|37|NZ_LR699010|CRISPRCasFinder matches to NZ_CP019601 (Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence) position: , mismatch: 10, identity: 0.73

aaggat-----ataggaagtaattatcttttccttctataag	CRISPR spacer
-----ttcttattaaaaagtaattatctttactttctataag	Protospacer
     *      **..************** *.*********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

917469 : 927575

Bacillus_phage(33.33%)

integrase

attL 918640:918660|attR 920480:920500

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111525603.1\|917469_918672_+	restriction endonuclease subunit S	A0A1V0SLK8	Klosneuvirus	5.3e-22	31.0
918640:918660	attL	NA	NA	NA	NA
WP_111525602.1\|918927_919911_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	1.5e-35	28.6
WP_111525601.1\|919925_920471_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_111525600.1\|920467_921061_-	restriction endonuclease subunit S	NA	NA	NA	NA
920480:920500	attR	NA	NA	NA	NA
WP_111525599.1\|921215_924365_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.2e-65	25.9
WP_111525598.1\|924659_925844_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.2e-154	67.6
WP_111525597.1\|925843_926875_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	6.3e-24	27.8
WP_111525596.1\|926885_927575_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.0e-37	36.7

DBSCAN-SWA_2

1051927 : 1060091

Clostridium_phage(33.33%)

integrase

attL 1051907:1051924|attR 1060694:1060711

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1051907:1051924	attL	NA	NA	NA	NA
WP_111526138.1\|1051927_1052986_-\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	1.5e-68	40.1
WP_111526111.1\|1053432_1054026_-	helix-turn-helix transcriptional regulator	A0A139ZPI6	Marinitoga_camini_virus	1.6e-08	28.8
WP_111526112.1\|1054187_1054382_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_111526115.1\|1054499_1054691_+	hypothetical protein	Q8SBM7	Clostridium_phage	6.4e-07	49.1
WP_111526113.1\|1054703_1056902_+	DNA primase	H9YQD3	environmental_Halophage	3.0e-15	25.7
WP_111526114.1\|1057363_1057627_+	hypothetical protein	NA	NA	NA	NA
WP_162902545.1\|1057631_1057781_+	hypothetical protein	NA	NA	NA	NA
WP_119808260.1\|1057783_1058128_+	hypothetical protein	NA	NA	NA	NA
WP_162902539.1\|1058099_1058273_+	hypothetical protein	NA	NA	NA	NA
WP_111526123.1\|1058819_1059221_+	phage scaffolding protein	Q5YA71	Bacillus_phage	4.6e-07	43.6
WP_111526122.1\|1059239_1060091_+	hypothetical protein	A0A2H4JBI0	uncultured_Caudovirales_phage	1.1e-63	47.5
1060694:1060711	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1912757 : 2038600

134

Clostridium_phage(33.33%)

capsid,transposase,plate,tRNA,portal,integrase,holin,tail,terminase,coat

attL 1988954:1988969|attR 2017050:2017065

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111524652.1\|1912757_1913255_-\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_111524651.1\|1913251_1914412_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_111524650.1\|1914408_1914891_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_111524649.1\|1914862_1915465_-	hypothetical protein	NA	NA	NA	NA
WP_111524648.1\|1915464_1917075_-	VanW family protein	NA	NA	NA	NA
WP_111524647.1\|1917290_1917998_-	3'-5' exonuclease	NA	NA	NA	NA
WP_111524646.1\|1917994_1918624_-	endonuclease III	NA	NA	NA	NA
WP_111524645.1\|1918620_1919115_-	dCMP deaminase family protein	G8DFT3	Emiliania_huxleyi_virus	3.5e-49	57.6
WP_111524644.1\|1919122_1920211_-	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	1.5e-47	37.3
WP_111524643.1\|1920211_1921207_-	exonuclease domain-containing protein	NA	NA	NA	NA
WP_111524642.1\|1921251_1921557_-	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_111524641.1\|1921564_1922701_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	9.2e-85	45.6
WP_119808288.1\|1922708_1925099_-	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	2.7e-25	31.6
WP_111524639.1\|1926193_1927585_-	thioether cross-link-forming SCIFF peptide maturase	NA	NA	NA	NA
WP_007593215.1\|1927663_1927810_-	six-cysteine peptide SCIFF	NA	NA	NA	NA
WP_111524638.1\|1927958_1930301_-	hypothetical protein	NA	NA	NA	NA
WP_111524637.1\|1930305_1930671_-	hypothetical protein	NA	NA	NA	NA
WP_111524636.1\|1930670_1932650_-	serine/threonine protein kinase	A0A0H4Y184	Salmon_gill_poxvirus	9.0e-19	32.6
WP_111524635.1\|1932660_1933419_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_111524634.1\|1933422_1934766_-	FHA domain-containing protein	NA	NA	NA	NA
WP_111524633.1\|1934775_1935834_-	AAA family ATPase	NA	NA	NA	NA
WP_111524632.1\|1935843_1937136_-	WG repeat-containing protein	NA	NA	NA	NA
WP_111524631.1\|1937145_1937769_-	prepilin peptidase	NA	NA	NA	NA
WP_111524630.1\|1937779_1939093_-	hypothetical protein	NA	NA	NA	NA
WP_111524629.1\|1939196_1940048_-	hypothetical protein	NA	NA	NA	NA
WP_111524628.1\|1940080_1943905_-	hypothetical protein	NA	NA	NA	NA
WP_111524627.1\|1943910_1944597_-	pilus assembly protein	NA	NA	NA	NA
WP_111524626.1\|1944625_1944856_-	hypothetical protein	NA	NA	NA	NA
WP_111524625.1\|1944928_1945783_-	type II secretion system F family protein	NA	NA	NA	NA
WP_111524624.1\|1945788_1946592_-	kinase	NA	NA	NA	NA
WP_111524623.1\|1946591_1947830_-	CpaF family protein	NA	NA	NA	NA
WP_111524622.1\|1948299_1949052_-	cobalamin biosynthesis protein CobW	NA	NA	NA	NA
WP_111524621.1\|1949303_1950221_-	cell surface protein	H7BVE5	unidentified_phage	9.3e-27	41.2
WP_111524620.1\|1950230_1950530_-	DUF4406 domain-containing protein	NA	NA	NA	NA
WP_111524619.1\|1950617_1951058_-	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_111524618.1\|1951035_1951239_-	hypothetical protein	NA	NA	NA	NA
WP_111524617.1\|1951342_1951786_-\|holin	phage holin family protein	A0A090D848	Clostridium_phage	1.1e-17	45.9
WP_162902567.1\|1951866_1952013_-	hypothetical protein	NA	NA	NA	NA
WP_111524616.1\|1952002_1952383_-	hypothetical protein	NA	NA	NA	NA
WP_111524615.1\|1952392_1954093_-	hypothetical protein	NA	NA	NA	NA
WP_111524614.1\|1954094_1954469_-	hypothetical protein	NA	NA	NA	NA
WP_111524613.1\|1954476_1955022_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_111524612.1\|1955014_1956082_-\|plate	baseplate J/gp47 family protein	A0A0A8WJT7	Clostridium_phage	2.2e-80	45.8
WP_111524611.1\|1956081_1956477_-	DUF2634 domain-containing protein	A0A0A7RTU4	Clostridium_phage	3.3e-29	54.3
WP_111524610.1\|1956481_1956781_-	DUF2577 domain-containing protein	A0A0A8WJ65	Clostridium_phage	5.2e-11	34.7
WP_111524609.1\|1956773_1957739_-	hydrolase	H7BVH4	unidentified_phage	4.9e-79	46.3
WP_172621800.1\|1957735_1958335_-	LysM peptidoglycan-binding domain-containing protein	X5J9Z8	Clostridium_phage	1.5e-30	44.7
WP_111524607.1\|1958406_1960374_-	tape measure protein	H7BWD9	unidentified_phage	1.2e-95	43.6
WP_111524605.1\|1960567_1960996_-\|portal	phage portal protein	X5JAB6	Clostridium_phage	6.4e-31	50.7
WP_111524604.1\|1961011_1961488_-\|tail	phage tail tube protein	A0A0A8WJ62	Clostridium_phage	8.2e-35	47.1
WP_111524603.1\|1961501_1962812_-\|tail	phage tail sheath subtilisin-like domain-containing protein	X5JAJ1	Clostridium_phage	9.6e-118	50.8
WP_162902568.1\|1962811_1962985_-	hypothetical protein	NA	NA	NA	NA
WP_111524602.1\|1962986_1963412_-	hypothetical protein	NA	NA	NA	NA
WP_111524601.1\|1963398_1963845_-	HK97 gp10 family phage protein	A0A0A8WFV8	Clostridium_phage	4.2e-25	43.6
WP_111524600.1\|1963844_1964216_-	hypothetical protein	X5JAV9	Clostridium_phage	1.2e-20	47.9
WP_111524599.1\|1964209_1964626_-	hypothetical protein	NA	NA	NA	NA
WP_111524598.1\|1964644_1965643_-\|coat	coat protein	A0A0A7RVZ1	Clostridium_phage	1.2e-112	65.1
WP_111524597.1\|1965661_1966279_-	phage scaffolding protein	A0A0A7S0J5	Clostridium_phage	2.4e-50	50.2
WP_162902569.1\|1966417_1966579_-	hypothetical protein	NA	NA	NA	NA
WP_111524596.1\|1966575_1968237_-\|capsid	minor capsid protein	X5JAI9	Clostridium_phage	9.6e-107	53.3
WP_111524595.1\|1968223_1969669_-\|portal	phage portal protein	A0A0A7S0I9	Clostridium_phage	8.0e-134	49.5
WP_111524594.1\|1969680_1970964_-\|terminase	PBSX family phage terminase large subunit	A0A0S2MVC1	Bacillus_phage	1.3e-151	61.9
WP_111524593.1\|1970947_1971355_-	hypothetical protein	A0A1S5SEB0	Streptococcus_phage	4.1e-11	35.6
WP_111524592.1\|1971410_1972037_-	DUF4417 domain-containing protein	H7BVQ9	unidentified_phage	3.7e-59	52.7
WP_111524591.1\|1972039_1972462_-	hypothetical protein	NA	NA	NA	NA
WP_146246998.1\|1972651_1973296_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_111524589.1\|1973348_1973762_-	hypothetical protein	NA	NA	NA	NA
WP_162902570.1\|1973758_1973920_-	hypothetical protein	NA	NA	NA	NA
WP_111524588.1\|1973906_1974158_-	hypothetical protein	NA	NA	NA	NA
WP_111524587.1\|1974157_1974412_-	hypothetical protein	NA	NA	NA	NA
WP_146246996.1\|1974422_1974746_-	hypothetical protein	NA	NA	NA	NA
WP_111524585.1\|1974732_1975032_-	hypothetical protein	M4NJS1	Sulfitobacter_phage	1.1e-13	44.7
WP_146246995.1\|1975028_1975274_-	hypothetical protein	NA	NA	NA	NA
WP_162902571.1\|1975243_1975396_-	hypothetical protein	NA	NA	NA	NA
WP_111524583.1\|1975395_1975869_-	hypothetical protein	NA	NA	NA	NA
WP_111524582.1\|1975865_1977236_-	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	4.5e-142	55.6
WP_111524581.1\|1977216_1977498_-	VRR-NUC domain-containing protein	A0A1W6JQA8	Corynebacterium_phage	2.3e-21	51.1
WP_111524580.1\|1977756_1980141_-	virulence-associated protein E	A0A0A7RTG3	Clostridium_phage	2.5e-196	44.1
WP_111524579.1\|1980144_1982106_-	DNA polymerase	H7BVQ1	unidentified_phage	4.2e-202	54.4
WP_111524578.1\|1982102_1982741_-	DUF2815 family protein	W8CPL2	Croceibacter_phage	4.6e-33	45.8
WP_111524577.1\|1982733_1983894_-	DUF2800 domain-containing protein	H7BVP9	unidentified_phage	5.2e-83	44.7
WP_111524576.1\|1983893_1984262_-	hypothetical protein	NA	NA	NA	NA
WP_111524575.1\|1984281_1984512_-	hypothetical protein	NA	NA	NA	NA
WP_111524574.1\|1984499_1984952_-	hypothetical protein	NA	NA	NA	NA
WP_111524573.1\|1984948_1985683_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_111524572.1\|1985683_1985953_-	hypothetical protein	NA	NA	NA	NA
WP_111524571.1\|1985963_1986188_-	triacylglycerol lipase	NA	NA	NA	NA
WP_119808291.1\|1986285_1986510_+	hypothetical protein	NA	NA	NA	NA
WP_111524569.1\|1986472_1986718_-	hypothetical protein	NA	NA	NA	NA
WP_111524568.1\|1986726_1987506_-	phage antirepressor KilAC domain-containing protein	A0A2H4JCR9	uncultured_Caudovirales_phage	9.5e-73	59.0
WP_111524567.1\|1987509_1987701_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_111524566.1\|1987966_1988146_-	hypothetical protein	NA	NA	NA	NA
WP_111524565.1\|1988159_1988357_-	helix-turn-helix transcriptional regulator	A0A1S5SDM7	Streptococcus_phage	3.2e-09	44.3
WP_111524564.1\|1988565_1988985_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
1988954:1988969	attL	NA	NA	NA	NA
WP_146246994.1\|1988990_1989398_+	ImmA/IrrE family metallo-endopeptidase	S6B1N5	Thermus_phage	9.8e-13	39.6
WP_111524562.1\|1989579_1989930_+	type II toxin-antitoxin system PemK/MazF family toxin	A0A1S5S7K2	Streptococcus_phage	1.9e-17	47.0
WP_162902574.1\|1990092_1991064_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	5.1e-100	54.8
WP_111524560.1\|1991436_1992534_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_119808251.1\|1998930_2000319_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_111525870.1\|2000508_2000913_-	hypothetical protein	NA	NA	NA	NA
WP_111525868.1\|2000995_2002288_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_111525867.1\|2002389_2004723_-	hypothetical protein	NA	NA	NA	NA
WP_111525866.1\|2004998_2005571_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_111525865.1\|2005632_2007072_-	DUF438 domain-containing protein	NA	NA	NA	NA
WP_111525864.1\|2007197_2007779_-	TerD family protein	A0A2R2YB15	Pseudomonas_phage	8.8e-15	31.1
WP_111525863.1\|2007891_2008251_-	YccF domain-containing protein	NA	NA	NA	NA
WP_111525862.1\|2008297_2008615_-	HIRAN domain-containing protein	NA	NA	NA	NA
WP_111525861.1\|2008702_2009692_-	WYL domain-containing protein	NA	NA	NA	NA
WP_111525860.1\|2010105_2010846_+	hypothetical protein	NA	NA	NA	NA
WP_111525859.1\|2011060_2011789_-	NAD-dependent protein deacylase	S5M4R0	Bacillus_phage	1.9e-27	33.6
WP_111525858.1\|2012099_2013518_-	alanine:cation symporter family protein	NA	NA	NA	NA
WP_111525869.1\|2013697_2014393_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_111525857.1\|2014493_2014925_-	hypothetical protein	NA	NA	NA	NA
WP_111525856.1\|2016102_2016645_-	hypothetical protein	NA	NA	NA	NA
WP_111525855.1\|2018033_2019461_-	class I SAM-dependent RNA methyltransferase	A0A2K5B251	Erysipelothrix_phage	6.2e-46	28.1
2017050:2017065	attR	NA	NA	NA	NA
WP_111525854.1\|2019515_2019782_-	DUF4366 domain-containing protein	NA	NA	NA	NA
WP_111525853.1\|2019854_2022062_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	6.8e-124	41.1
WP_111525852.1\|2022131_2023019_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	8.7e-22	42.0
WP_009220812.1\|2023191_2023647_-	DIP1984 family protein	NA	NA	NA	NA
WP_111525851.1\|2023664_2024537_-	EamA family transporter	NA	NA	NA	NA
WP_111525850.1\|2024636_2025137_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_111525849.1\|2025136_2025529_-	SdpI family protein	NA	NA	NA	NA
WP_111525848.1\|2025714_2026854_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
WP_111525847.1\|2026850_2029616_+	SMC family ATPase	I3WVG4	Acinetobacter_phage	2.9e-07	24.6
WP_119808297.1\|2031861_2032065_+	hypothetical protein	NA	NA	NA	NA
WP_119808299.1\|2032078_2032450_+\|transposase	transposase	S5VTP8	Leptospira_phage	7.1e-18	47.3
WP_162902575.1\|2032835_2033387_+	MobA/MobL family protein	NA	NA	NA	NA
WP_111525357.1\|2034378_2034648_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_172621801.1\|2034727_2035738_+	permease	NA	NA	NA	NA
WP_111525356.1\|2035750_2036059_+	thioredoxin family protein	NA	NA	NA	NA
WP_111525355.1\|2036539_2036653_+\|transposase	transposase	NA	NA	NA	NA
WP_111525354.1\|2036762_2037095_+\|transposase	transposase	S5VTP8	Leptospira_phage	7.5e-19	47.1
WP_111525353.1\|2037638_2038016_+	hypothetical protein	NA	NA	NA	NA
WP_162902576.1\|2038438_2038600_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2102239 : 2153828

Faecalibacterium_phage(42.86%)

plate,terminase,portal,integrase,head,holin,tail,protease,transposase

attL 2109997:2110019|attR 2154329:2154351

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_119808303.1\|2102239_2103994_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	2.2e-45	27.6
WP_111524821.1\|2104274_2104673_-	hypothetical protein	NA	NA	NA	NA
WP_111524827.1\|2104736_2105897_-\|holin	choline-binding protein A	NA	NA	NA	NA
WP_111524820.1\|2106616_2108239_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_111524819.1\|2108253_2109639_-	extracellular solute-binding protein	NA	NA	NA	NA
2109997:2110019	attL	NA	NA	NA	NA
WP_111524818.1\|2110092_2110323_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_111524817.1\|2110537_2110798_+	hypothetical protein	NA	NA	NA	NA
WP_162902577.1\|2110896_2111700_+	recombinase family protein	A0A097BYD1	Leuconostoc_phage	1.1e-39	38.6
WP_111524815.1\|2111793_2112225_-\|holin	phage holin family protein	A0A0N7GFE6	Paenibacillus_phage	1.5e-16	41.1
WP_111524814.1\|2112249_2113167_-	cell surface protein	H7BVE5	unidentified_phage	6.4e-28	41.4
WP_111524813.1\|2113221_2113620_-	type II toxin-antitoxin system HicB family antitoxin	A0A1L2JY34	Aeribacillus_phage	3.5e-23	41.7
WP_111524812.1\|2113677_2113878_-	type II toxin-antitoxin system HicA family toxin	A0A1L2JY37	Aeribacillus_phage	1.3e-13	55.6
WP_162902578.1\|2113961_2114105_-	hypothetical protein	NA	NA	NA	NA
WP_111524811.1\|2114097_2114475_-	hypothetical protein	NA	NA	NA	NA
WP_111524810.1\|2114485_2116087_-	hypothetical protein	NA	NA	NA	NA
WP_111524809.1\|2116088_2116868_-	hypothetical protein	NA	NA	NA	NA
WP_162902579.1\|2116871_2117423_-\|tail	phage tail protein I	A0A2K9V433	Faecalibacterium_phage	1.3e-15	31.7
WP_111524807.1\|2117415_2118552_-\|plate	baseplate J/gp47 family protein	A0A2K9V320	Faecalibacterium_phage	1.3e-70	39.5
WP_111524806.1\|2118544_2118844_-	hypothetical protein	NA	NA	NA	NA
WP_111524805.1\|2118843_2119242_-\|tail	phage tail protein	A0A2K9V465	Faecalibacterium_phage	1.1e-08	31.9
WP_111524804.1\|2119244_2119634_-	hypothetical protein	A0A2K9V325	Faecalibacterium_phage	3.2e-13	39.1
WP_111524803.1\|2119630_2120893_-	LysM peptidoglycan-binding domain-containing protein	G3MBQ1	Bacillus_virus	3.6e-05	42.4
WP_111524802.1\|2120892_2121099_-\|tail	phage tail protein	NA	NA	NA	NA
WP_162902580.1\|2124684_2125005_-\|tail	phage tail assembly protein	A0A2K9V324	Faecalibacterium_phage	5.3e-06	33.7
WP_111524800.1\|2125100_2125616_-\|tail	phage major tail tube protein	A0A2K9V323	Faecalibacterium_phage	3.1e-32	40.7
WP_111524799.1\|2125615_2127070_-\|tail	phage tail sheath family protein	A0A2K9V328	Faecalibacterium_phage	1.0e-128	46.2
WP_111524798.1\|2127056_2127419_-	hypothetical protein	NA	NA	NA	NA
WP_111524797.1\|2127418_2127886_-	hypothetical protein	NA	NA	NA	NA
WP_111524796.1\|2127882_2128521_-\|tail	phage tail protein	NA	NA	NA	NA
WP_111524795.1\|2128520_2128850_-	hypothetical protein	NA	NA	NA	NA
WP_111524794.1\|2128849_2129137_-	hypothetical protein	NA	NA	NA	NA
WP_111524793.1\|2129138_2129468_-	DUF2190 family protein	NA	NA	NA	NA
WP_111524792.1\|2129482_2130964_-\|head	Mu-like prophage major head subunit gpT family protein	A0A2K9V304	Faecalibacterium_phage	3.7e-118	42.8
WP_111524791.1\|2131121_2131703_-\|head,protease	HK97 family phage prohead protease	A0A2K9V308	Faecalibacterium_phage	4.5e-43	55.1
WP_111524790.1\|2131695_2133162_-\|portal	phage portal protein	A0A2K9V303	Faecalibacterium_phage	9.0e-149	53.1
WP_111524789.1\|2133164_2133395_-	peptidylprolyl isomerase	A0A2K9V311	Faecalibacterium_phage	1.8e-11	59.2
WP_111524788.1\|2133385_2135209_-\|terminase	phage terminase large subunit family protein	A0A2K9V301	Faecalibacterium_phage	6.1e-163	51.6
WP_111524787.1\|2135096_2135729_-	DNA-packaging protein	NA	NA	NA	NA
WP_111524786.1\|2136103_2136502_-	type II toxin-antitoxin system HicB family antitoxin	A0A1L2JY34	Aeribacillus_phage	5.8e-26	42.5
WP_111524785.1\|2136562_2136745_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_111524784.1\|2136819_2137221_-	hypothetical protein	NA	NA	NA	NA
WP_111524783.1\|2137242_2137500_-	hypothetical protein	NA	NA	NA	NA
WP_111524782.1\|2137502_2138105_-	hypothetical protein	NA	NA	NA	NA
WP_111524781.1\|2138131_2138551_-	single-stranded DNA-binding protein	A0A2H4J8K2	uncultured_Caudovirales_phage	2.6e-37	68.3
WP_111524780.1\|2138547_2139162_-	HNH endonuclease	A0A1V0E8E4	Vibrio_phage	4.6e-22	36.2
WP_111524825.1\|2139158_2139404_-	hypothetical protein	NA	NA	NA	NA
WP_111524779.1\|2139473_2140469_-\|integrase	tyrosine-type recombinase/integrase	A0A218KCA5	Bacillus_phage	6.3e-05	37.0
WP_111524778.1\|2140483_2141533_-\|integrase	tyrosine-type recombinase/integrase	A0A1W6JNC2	Staphylococcus_phage	4.6e-06	24.4
WP_111524777.1\|2141529_2142180_-	N-6 DNA methylase	NA	NA	NA	NA
WP_111524776.1\|2142311_2142653_-	hypothetical protein	NA	NA	NA	NA
WP_111524824.1\|2142694_2143093_-	RusA family crossover junction endodeoxyribonuclease	H2BD71	Pseudomonas_phage	1.8e-19	42.0
WP_162902581.1\|2143169_2143625_-	hypothetical protein	NA	NA	NA	NA
WP_111524774.1\|2143591_2144389_-	hypothetical protein	NA	NA	NA	NA
WP_147628896.1\|2144542_2144854_-	hypothetical protein	NA	NA	NA	NA
WP_162902582.1\|2144814_2145186_-	hypothetical protein	NA	NA	NA	NA
WP_111524771.1\|2145194_2145389_-	hypothetical protein	NA	NA	NA	NA
WP_111524770.1\|2145426_2145621_-	hypothetical protein	NA	NA	NA	NA
WP_111524769.1\|2145645_2146578_-\|integrase	site-specific integrase	A8ATM2	Listeria_phage	6.2e-79	46.8
WP_111524768.1\|2146606_2146801_-	hypothetical protein	NA	NA	NA	NA
WP_111524767.1\|2146889_2147192_-	hypothetical protein	NA	NA	NA	NA
WP_111524766.1\|2147542_2147794_-	hypothetical protein	NA	NA	NA	NA
WP_111524765.1\|2147815_2148043_-	hypothetical protein	NA	NA	NA	NA
WP_111524764.1\|2148063_2148252_-	hypothetical protein	NA	NA	NA	NA
WP_111524763.1\|2148260_2148497_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_111524762.1\|2148661_2148994_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_111524761.1\|2149176_2149509_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_111524760.1\|2149669_2149894_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_111524759.1\|2150050_2150773_+	helix-turn-helix domain-containing protein	A0A139ZPI6	Marinitoga_camini_virus	2.1e-18	29.5
WP_111524758.1\|2150798_2151668_+	ATP-binding protein	NA	NA	NA	NA
WP_111524757.1\|2151667_2152039_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_111524756.1\|2152028_2152613_+	PIN domain-containing protein	NA	NA	NA	NA
WP_111524755.1\|2152781_2153828_+\|integrase	site-specific integrase	H7BVE3	unidentified_phage	1.6e-131	61.4
2154329:2154351	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2508429 : 2574203

Planktothrix_phage(23.08%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_119808251.1\|2508429_2509818_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_111526018.1\|2510134_2511010_+	polysaccharide deacetylase	NA	NA	NA	NA
WP_111526019.1\|2511223_2511820_-	3D domain-containing protein	A0A0H3UZG2	Geobacillus_virus	1.2e-06	40.2
WP_111526020.1\|2512078_2512591_-	DsbA family protein	NA	NA	NA	NA
WP_111526021.1\|2512727_2513108_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_111526022.1\|2513379_2513961_-	hypothetical protein	NA	NA	NA	NA
WP_111526023.1\|2514015_2515254_-	AI-2E family transporter	NA	NA	NA	NA
WP_111526024.1\|2515255_2516554_-	M18 family aminopeptidase	NA	NA	NA	NA
WP_111526025.1\|2516574_2517171_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_111526026.1\|2517215_2519510_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	4.7e-160	41.2
WP_111526027.1\|2519565_2520849_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.7e-133	56.7
WP_007595427.1\|2520858_2521440_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.5e-54	57.6
WP_111526028.1\|2521520_2522807_-	trigger factor	NA	NA	NA	NA
WP_111526029.1\|2522933_2523443_-	hypothetical protein	NA	NA	NA	NA
WP_119808255.1\|2523671_2525060_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_111525845.1\|2525300_2525774_+	CYTH domain-containing protein	NA	NA	NA	NA
WP_111525844.1\|2527520_2528372_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_111525843.1\|2528368_2529379_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_111525842.1\|2529372_2530323_-	ABC transporter permease	NA	NA	NA	NA
WP_111525841.1\|2530325_2531837_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.6e-18	25.9
WP_111525840.1\|2531836_2532865_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_111525839.1\|2532874_2533684_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_111525838.1\|2533696_2534878_-	ROK family transcriptional regulator	NA	NA	NA	NA
WP_111525837.1\|2535236_2535719_-	nucleoside deaminase	NA	NA	NA	NA
WP_111525836.1\|2535735_2536788_-	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009446225.1\|2536819_2537749_-	ABC transporter permease	NA	NA	NA	NA
WP_111525835.1\|2537745_2538813_-	ABC transporter permease	NA	NA	NA	NA
WP_111525834.1\|2538805_2540335_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.5e-10	26.9
WP_111525833.1\|2540406_2541216_-	response regulator	NA	NA	NA	NA
WP_111525832.1\|2541306_2542794_-	histidine kinase	NA	NA	NA	NA
WP_111525846.1\|2542963_2544028_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_111525831.1\|2544050_2545643_-	ATPase	NA	NA	NA	NA
WP_111525830.1\|2545652_2546345_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_111525829.1\|2546355_2547786_-	L-arabinose isomerase	NA	NA	NA	NA
WP_111525828.1\|2548721_2549558_+	PRD domain-containing protein	NA	NA	NA	NA
WP_111525827.1\|2549561_2550038_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_111525826.1\|2550098_2551541_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_111525825.1\|2551580_2552915_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_111525824.1\|2553078_2553735_-	hypothetical protein	NA	NA	NA	NA
WP_111525823.1\|2553739_2554288_-	anaerobic ribonucleoside-triphosphate reductase activating protein	L7TIP4	Escherichia_phage	7.0e-38	47.8
WP_111525822.1\|2554287_2555316_-	3-deoxy-7-phosphoheptulonate synthase	A0A0G2SSM2	Proteus_phage	9.7e-49	35.8
WP_111525821.1\|2555573_2556800_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	3.3e-64	35.5
WP_111525820.1\|2556879_2559048_-	anaerobic ribonucleoside-triphosphate reductase	A0A2H5BH09	Vibrio_virus	4.9e-127	37.8
WP_162902590.1\|2559482_2560433_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_111525818.1\|2560422_2561217_+	ABC transporter permease	NA	NA	NA	NA
WP_111525817.1\|2561247_2562819_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_111525816.1\|2562818_2563583_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.3e-21	33.8
WP_111525815.1\|2563596_2564349_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.5e-17	28.1
WP_119808241.1\|2564430_2566188_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_111526096.1\|2566565_2567015_+	DUF3290 domain-containing protein	NA	NA	NA	NA
WP_111526095.1\|2567018_2567654_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_111526094.1\|2567774_2568572_-	hypothetical protein	NA	NA	NA	NA
WP_111526093.1\|2568665_2569517_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_111526092.1\|2569541_2570315_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-35	42.1
WP_111526091.1\|2570334_2571006_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_111526090.1\|2570986_2571646_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_119808315.1\|2572163_2573027_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_119808317.1\|2573321_2574203_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR699010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection