CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LR632929	Chitinophaga pinensis isolate 2 chromosome 1	2 crisprs	csa3,cas3,DEDDh,PD-DExK,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LR632929_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR632929_1

2532145-2532239

Orphan

Consensus_repeat	Method
GGCTCGCCGATCTGAATGGCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR632929_1

>merge|NZ_LR632929|1|2532145-2532239|CRISPRCasFinder
GGCTCGCCGATCTGAATGGCGACAGCTCCCGCGACTGGCGGGATCTGGCTATCGAAACCGAACTCGTTTACCGGCTCGACGATCTGAATGGCGAC

>NZ_LR632929|1|1|2532145-2532239|CRISPRCasFinder
GGCTCGCCGATCTGAATGGCGAC	AGCTCCCGCGACTGGCGGGATCTGGCTATCGAAACCGAACTCGTTTACC
GGCTCGACGATCTGAATGGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR632929.1\|WP_142677873.1\|2542882_2543467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142677869.1\|2537367_2537940_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LR632929.1\|WP_142677872.1\|2541031_2541424_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142680736.1\|2538007_2539267_+\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_LR632929.1\|WP_142680737.1\|2541639_2542794_-\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NZ_LR632929.1\|WP_172622177.1\|2517466_2521342_+\|RICIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|379501
NZ_LR632929.1\|WP_142677868.1\|2535956_2537354_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LR632929.1\|WP_142677861.1\|2526748_2527507_+\|SH3-domain-containing-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142677863.1\|2527983_2528169_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142680735.1\|2528284_2528863_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142677871.1\|2539964_2540561_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142677858.1\|2521428_2523651_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_LR632929.1\|WP_142677867.1\|2535466_2535880_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_LR632929.1\|WP_142677864.1\|2528867_2530421_+\|flotillin-family-protein	unknown	unknown	gnl\|CDD\|259798
NZ_LR632929.1\|WP_142677870.1\|2539335_2539821_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142677859.1\|2523681_2525208_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293755
NZ_LR632929.1\|WP_142677874.1\|2543490_2545665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142677865.1\|2530499_2531642_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|239068
NZ_LR632929.1\|WP_142936335.1\|2527516_2527870_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142677860.1\|2525530_2526304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367700

Protein	Function_ID	Function_description	E-value
NZ_LR632929.1\|WP_142677858.1\|2521428_2523651_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.58197e-59
NZ_LR632929.1\|WP_142677867.1\|2535466_2535880_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	2.8635e-37
NZ_LR632929.1\|WP_142677869.1\|2537367_2537940_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.000763928
NZ_LR632929.1\|WP_142677864.1\|2528867_2530421_+\|flotillin-family-protein	gnl\|CDD\|259798	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. The flotillin (reggie) like proteins are lipid raft-associated. Individual proteins of this SPFH family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. In addition, microdomains formed from flotillin proteins may be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and interact with a variety of proteins. They may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and in cancer invasion, and metastasis.	2.82363e-49
NZ_LR632929.1\|WP_142680736.1\|2538007_2539267_+\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	4.7248e-172
NZ_LR632929.1\|WP_172622177.1\|2517466_2521342_+\|RICIN-domain-containing-protein	gnl\|CDD\|379501	pfam14200, RicinB_lectin_2, Ricin-type beta-trefoil lectin domain-like.	2.80561e-21
NZ_LR632929.1\|WP_142680737.1\|2541639_2542794_-\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	1.07479e-08
NZ_LR632929.1\|WP_142677859.1\|2523681_2525208_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293755	cd16031, G6S_like, unchracterized sulfatase homologous to glucosamine (N-acetyl)-6-sulfatase(G6S, GNS). N-acetylglucosamine-6-sulfatase also known as glucosamine (N-acetyl)-6-sulfatase hydrolyzes of the 6-sulfate groups of the N-acetyl-D-glucosamine 6-sulfate units of heparan sulfate and keratan sulfate. Deficiency of N-acetylglucosamine-6-sulfatase results in the disease of Sanfilippo Syndrome type IIId or Mucopolysaccharidosis III (MPS-III), a rare autosomal recessive lysosomal storage disease.	0
NZ_LR632929.1\|WP_142677868.1\|2535956_2537354_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.60585e-49
NZ_LR632929.1\|WP_142677865.1\|2530499_2531642_+\|aminopeptidase	gnl\|CDD\|239068	cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues.	2.13144e-07
NZ_LR632929.1\|WP_142677860.1\|2525530_2526304_+\|hypothetical-protein	gnl\|CDD\|367700	pfam03867, FTZ, Fushi tarazu (FTZ), N-terminal region. This region contains the important motif (LXXLL) necessary for the interaction of FTZ with the nuclear receptor FTZ-F1. FTZ is thought to represents a category of LXXLL motif-dependent co-activators for nuclear receptors.	0.000724138

>NZ_LR632929.1|WP_142677865.1|2530499_2531642_+|aminopeptidase
MPFYRHSFLIAAAGLISACDSNHEPPPPPPSEYQFTELLNLPVTGIKSQDQSGTCWCFSTASFLESEILRKTGDSADLSEMYFVRNAYELKARNYIFRQGTSRFTEGGSNHDPIISMQFYGMMPQSAYQGTTVGDSSYNHSRLYPEMLDSVKVWADVSKQRGGSWGKGLPAIMDKYMGSVPAEFTYKGKRYTPQSYLLSTGIRPEDYISITSFSHVPFYAPFILEIPANHNNGQFYNLPLDEYIAVIDHALDSGFTLALDTDASEPGFSGQEGVAMVAANPANARSIVRKVQPERTDISQQFRQEEFESFRTVDDHNMHITGRVQDQTGKKYLKVKNSWGPKACRNGFVYMSYPYIRLKSIYVMLHKDALPAATRTRIGL
>NZ_LR632929.1|WP_142677864.1|2528867_2530421_+|flotillin-family-protein
MDFVLIAVLVAVFFIFTLLYALFKRYKRCPSDQILVVYGKVGKGPDGSHSARCIHGGAAFIWPVIQDYAFMELTPISIEVNLTNALSRQNIRVDVPSRFTVAISTEPGTMTNAAERLLGLQRAAIHDLAKDIIFGQLRLVVATMDIEEINNNRDKFLANVASNVEAEIKKIGMKLINVNVTDIKDESGYIEALGKEAAAKAINEAKKSVAEQEKLGETGKAEADREKDITIQQTLKNRDVSIAETQRDRDTLIATANKDKSVLIAAANRDEAIGKAEAERDTRIRASQANALAVEGENTARIQIAQSEASRREREAEASKRAVAAEKIQSAKALEEAYLAEKNAEEARASRERASQNANIVVTAEIQKQKAIIEAQAEAEKIREKAKGEADAIYAKMEAEAKGMYEILTKQAQGLDRIVQAAGNNSKDAVLLLIADKLPELVRLQTEAIKNIKIDKVTVWEGANNANGQSSTAGFISGLYKAVPPLQDMFNMAGMDLPTFLGKQKNGDETLPTVTEE
>NZ_LR632929.1|WP_142680735.1|2528284_2528863_+|hypothetical-protein
MMDWFGPLPVFEKVFWSVAILFSLLFLIQNVLSLIGGEHDGATGDVSDMLDADDGIGFQFFTIRNMFGFFTIFGWTGLACIHNGFSPTVTVITSVVAGFGMMLLMAALFYYTGRLAYNGTLKMQNALKASGTVYLTIPAARTGMGKVTLQVQGSWRELDAMTDEDAPIATGTLVTVASILDNQILLVTKQTR
>NZ_LR632929.1|WP_142677863.1|2527983_2528169_-|hypothetical-protein
MNVKRTFGTILTILGIVGIIYAGYGFIREGGGWRELVVAGVIGLIFFVSGISLVRNTRDES
>NZ_LR632929.1|WP_142936335.1|2527516_2527870_-|hypothetical-protein
MTETVFRVEGIHEGYVFNTGLPRSRLPLEKANPVQLDVSYLFQFGFLAGDRDYGEDPDIYTYKYNRTDSIYIRDEGDKFQPLAAYEGGFAPYGKPILHLHQLQNLFYDLTREDVFMQ
>NZ_LR632929.1|WP_142677861.1|2526748_2527507_+|SH3-domain-containing-protein
MRTVLIPILLIAATSVNAQTHQWAVIEDSDHFTNIRQAPSANAPVVNSIWENQFFVVEKKKGEWWKVLNQSIASEGSGYIHKSRVKLINELPDTAAQRLLRKVFGGYHRLVSLRNDINERRDNKPDKFTAEDNALLLKTNLSISETHDKSYEPALRFLPKYLSRTKDSAVLKDFFQIVAADTGSASEAPGDALGECYISQPEWFLKQLVALPSREREIVFKQTQFGLGNNLNVAADKRAALSEMLKVEMVRR
>NZ_LR632929.1|WP_142677860.1|2525530_2526304_+|hypothetical-protein
MAILESLIPFTGRLGNIIAYKRNGKHCLRTVPETVRQTANTRRAAKTFGAASRKGALIRSAFRPHLDIFPDRVVVNRLNSYILDAGRNNHAGLKGFRFNGYTGLNKYFGPPPVFTKDGRLHIPPQRFQTFKKAVRMEIKVIASRIDFSTRTITGTDTAVLSIDLKERFQDFEGGDMWVNVPGKGTLVVTLQVKQFFEDFDIRDRKCEAADIIAVVEDQPRKVMTTQVNPHKKLSYPPRTIIHNPVPTQNAQLITQRE
>NZ_LR632929.1|WP_142677859.1|2523681_2525208_-|sulfatase-like-hydrolase/transferase
MQIRGVLLASLMVLGVNASAQSSKRPNIIFIFSDDHAFQAVSAYGGKLAQTPHIDRIAREGAIFRNALVTNSICGPSRATLLTGKYSHRNGYPRNEQRFDVTQVLFPRVLQQNQYQTAWIGKWHLGSLPEGFDYWRILPGQGHYYNPDFIEKGKDTARSQGYVTNIVTDFSIDWMQHRDTSKPFMLVVGHKATHREWLPDLQDLGAYDNINFPVPANFNDTYENREGARNQDMTISKTMRLDFDLKVHANYKGWVYNRFTPEQLSAFKGYYDGKVTKEFDEKKLTGDALTAWKYQRYLKDYLATANSLDRNIGRLLEYLDRSGLAQNTVVVYASDQGFYMGEHGWFDKRFMYEESLRTPFVVRYPGVIKPGTKVDGLMCNIDWAPTILDWAGVAVPEEMQGRSFMPLVTKGGNKASWRKAAYYHYYEYPEPHKVSPHFGVRTEKYSLIRFYGPADSWELYDLTKDPGQVKNLIGAKGYDKITADLKAELRKQMVQYKDDEALRLLDKG
>NZ_LR632929.1|WP_142677858.1|2521428_2523651_+|TonB-dependent-receptor
MQSPLTITKAPVLLLAYLVHGGLAAAQERPAVRDTVHPLSEVIVTANKFEEKSRYVAQKVEVIHAPEIRASLSNNTGSLLEQSGKVFVQRSQLGGGSPVLRGFEASRILLVVDGVRMNNAIYRTGHLQNVITIDDDITEKVEIIYGPASTIYGSDALGGVIHFRTKAPQFNKTSTHLSARYSSAFREYTGHADVNVGGKKFASLTSFSYSDIGDLRMGARRNSDDGEWGKRKQFISTVNGADSILTNTDDRIQRHSAYRQYDLLQKFRWQPREGSEHLLNLQYSTSSDIPRYDRLTDVRNSKLRWAEWYYGPQDRLMASWQYKTTRLKGFFDQLLAGASYQAVEESRMQRAYRNSEREHRIENIHVAAFHLDLRKSKGRHELNAGGDGQLNFLRSSAFRQNVEHGGKTFGLDTRYPDGRNYMHYFGSYAQHLYKIVPGKLILNDGIRVNYTTLHSTFSDTSILHLPFTEASQRHITYSANLGLIYLPDAQTKLSASASTGYRAPNIDDIAKVFESAGGAQLVVPNPDLKPEQTINFDLSAARQFGKQLYVEVNGFYSIMRNAIVLNRFRFNGKEEMLYNGVLTPVVAAQNKAKATIAGFQASLQWQLLERLRAYGHITYTHGRYTDGKGIRMPMDHIPPVFGKAGIQYGWRQLETEGYVLFNGWKRAKNYNPNGEDNLVYATEKGMPSWATINLSARYPVMPWLKVQAGLENLLDVHYRVFASGISNPGRNLVLKVQAAF
>NZ_LR632929.1|WP_172622177.1|2517466_2521342_+|RICIN-domain-containing-protein
MPFSFKAFILATLLFSAVWHTASAQSMEMKVNAANPHLPDWVKLMYSENPDPEKVTDAFERYYETHPFVKNEYTQYYKRWLREVSRNPYSAPPDKGPNEKDRQLGRAYLQRSNETAQLRALSGVANWTCVGPVNFDNGASGTSYASGAAHVYTVEQSLSNTNVLYAGTANAGLFKSTDKGLNWTALTDNMLVSSIVSIEIDQLNADIVYFGGASRLYKSTNGGTSFSQAGDATFNSVNHSINDIVSRPGFNNTLFVASNQGLYRSLDAGATFTQLMTGIFQEVEFKPGSNTTAYAIRQTGVKTEFYKSTDGGATWTIKTTGWPNPTASGEEQKRTEISVTAANANIVYALATGAANGGSGLYGIYKSTDSGETWSFSCCGSGPGGAPNATTNKNLMAWADDGSDDGGQYYYDLALDVDPANANNLQLGAVNRWVSTDGGVNWTCPAKWSHSNKVNYVHADIHDIRFYGSDLWIACDGGIFYSNDGGANFQIRMKGIKGTDFWGFGVGNWEGNNVMVGGTYHNGTLLKDNNTYTDGWISTGGGDNYLGAVSYANDRIVVFDYGRKQLTGSRSTAPLTLPNGKLPNRSYTIGQSSDIIWDAQYYNTIWLGEGNALWKSTDAGATYTAVYDFGEKIGCIAVGYQNPSTMYAATLGTVKKVMRSTNGGTSWTDVTPTGLSSSSVAFDITISAANPDHIWVARVNSTVDGQKVFKSTDGGTSWTNLSTTLLNGEQVTEILHQRGTNGGVYIGTKRSVYYRNNAMADWVLYNTGLPSLTFCTRLAIDYKDAKLINGTNRSVWVSDLYETSAPQALIAVDAPTKTVGDTARFYNNSAQQITSAAYSWTFPGGTPATSTARNPKVIYSAPGTYNVSLTVTDDQGNNSLTKTNFITITGGNGLIDSAIYELKPGNALTRNLQVTGGGTADGTNVNILLDNSANYQRWKLINLSGGYYKLLPQHTTGKALDVNGGGTVDGTNIHMWTDNSGNAQRWKIVSAGGGFFKLQAANDLTKVMEVANGTDADNTNVQIYTDNNTAAQKWRFDIISAPACGGGTVPAKSNWTVKYVSSEETVGEGAGNGRAIDAIDGNTATYWHTAWYSSSPTHPHELHIDLGACATIGRFGYLPRQDAGTNGTIAGYEIYTSSDGVNWGTAAATGTWSTSGKTERVVTFTARNARFVRLKTLSSISSGAWASAAEINVYAPVPAVVTEKEETTVAKMSSVRVFPNPAQQFINIQLPAGLKLPVRFWVHNMDGKLRQFGMLQQTAYQLNTSNLPNGMYILTIETPGGRETSRFVIQR
>NZ_LR632929.1|WP_142677867.1|2535466_2535880_-|winged-helix-turn-helix-transcriptional-regulator
MKKDTNEQHSGFAQTAAGAQLIENNCAMTLAMQVIGGKWKLLILNAIRKECPARFGELRDKMVDITHATLTAQLRELERDGVIERKAYAVSPPKVEYKLTELGKLLIPVMQALCDWGEAFRQSAVVSAERIEEGTAE
>NZ_LR632929.1|WP_142677868.1|2535956_2537354_+|MFS-transporter
MKKHPSGWLQLAIISSAVFLAVIDIFIVNVALPSIRTGLGGTDADMQLVIAMYLLGYASFLITGGKLGDRYGQKRVFVTSMFLFTLASCCCGIAATPFQLNAARFIQGICAAFLIPQSIALVHILYPEHKARIRALGMYGTIAGSASVIGQLLGGIIPDLQGPVAGWRFIFLINLPVGLIAGILALRKLPATPVTSSARIHAGSVALLTAGLMSLVYPLIQGRELGWPLWSIWLLAASFPLLAAFVLLQRKLAEPLIPLQLFRIRDYRLALLATLSYFMVQDSYFLIHAVLLQSGYGLSATATGMLFVAQGLGYVLASLITMRLLGRYGKKVLLAGVGMMVVTLALHMYLFAGGLPGNGTLLPVLFAYGMGCGTVLPSLLTTAMKGIPQPLAGAASGTYSTFQQTAVALGVSVCSGIFFGLLQSGHSYTAAYLPATGLNIALLLLTALFLSRMPGSLPHTSKSYI
>NZ_LR632929.1|WP_142677869.1|2537367_2537940_+|GNAT-family-N-acetyltransferase
MQQGPIATVVTTVEELHQIAALSESNHTELLSPEQKSKEGFVTWSYTFDILQQLHAIAPAVIVKDGDTVAGYALVLTKAGANTYLPLQSMLDNFRHVVYKGRPLNSHNYYVMGQVCVHPAYRGKGVFAQLYEHHKALYAGEYDFLLTEISIFNHRSLRAHEKVGFRPIHTYTDDMSTWNVVVWDWQEENV
>NZ_LR632929.1|WP_142680736.1|2538007_2539267_+|PQQ-dependent-sugar-dehydrogenase
MYPTPQLLRAFCVGGAVVIASCGQGTSGNNTKDSTTASAQQDSSHVPVETKAANTDYKPAFEGQTRIAGVTTSTPFEGKILSEGLSKPWGITSLPDGRLLITEKGGTLRIATQQGQLSEPITGLPEVNSKGQGGLLGLRVDPDFANNRMVYWVFSEQRPGGTLTAVAKGKLSADEKKIEGATVIYRATPEYDGTLHYGGRILIDKDNNLIVSTGERSDLATRPQAQDLKSGLGKIVRITKDGKPAAGNPFAGDANARPELYSYGHRNVQGLAFHPVSGDLWETEFGPRGGDELNRVEAGKNYGWPTITYGLEYSGKKIGDSIQQKAGLEQPVYYWDPVLSPSGMTFYTGTDIPEWQNSLFVSGLSSTHIARLVIQNNKVVGEERILPNEGQRFRDITQGNDGALYAVTDQGRLYRIAKK
>NZ_LR632929.1|WP_142677870.1|2539335_2539821_-|hypothetical-protein
MPQLTKDLTASSEWIIQCFGSIGLKLDHSLDSILHIDGFLQMNIANSQPIPGSILASNFGQILFGLGAYLGETIIRHAPGAEWITNDEDPHGEVNAMVQLANGGQLWPMMKVIKRAQNGFEDSVYPYAYEITKPYGNIPFNASFWDIGKLQPVKKPWYKFW
>NZ_LR632929.1|WP_142677871.1|2539964_2540561_-|hypothetical-protein
MKHFIKFFYCDFVMGLGLMLFSLIAETDFADTLVVKFAFADFALPLNWFILVFGTFMFSVFIFLVNLICYDIFYYKNVPNRLRNEFGFLLVLLLKYALPTFLIWSVTIGGVSVLEEMPVTSFIFRAFMSISLVLDLVVFSFKFSGDDVITIKFGSKTFVYPCRKIHNYLTMITWGIFAVSVGKVYKTKIDSSKHSTLR
>NZ_LR632929.1|WP_142677872.1|2541031_2541424_-|hypothetical-protein
MIRNADPLERNARKRMEAKISKKLRVKCIHACCHGFRSLVMIVLGMLNFIWVIPPGSLHTAASDSYMISIAHAFYNTSIPGQIFIILVFAAFVFPFGKLLNDLTAISAILRRRAGYRNQHCKNDSGNSAL
>NZ_LR632929.1|WP_142680737.1|2541639_2542794_-|exo-alpha-sialidase
MFLTLFLNVAAQTTPPGVVVTHVPAATKTYIGSPSIAVLPDGSYIASHDFFGPNSTEFVQAVTRVFRSKNKGRTWKKVSEVRGAFWSSLFVHRDTLYLLGPDRHHGTVLIRRSVDGGASWTQPSTKEDGLLLAGMYHCAPMPVVEHNGRLWRPMETAHGPVLEWGKRYGAMMMSADVNADLMKAASWRVTNSLLYDSAYLGGNFRGWLEGNAVPAPDGGMVNILRVDDRSTLDEKAAIVQISADGRKAAFDTATGFIPFPGGSKKFVIRYDGQSRRYWTLANIIPQQYRDQYPQRNPATFRNTLALMSSADLRNWQTHEVVLQHPDVLHHGFQYVDWLVEGDDLIVLCRTSFGEGAEQAHNNHDANYLTFHRIARFRDKTAQVK
>NZ_LR632929.1|WP_142677873.1|2542882_2543467_-|hypothetical-protein
MKKYISIFIIICAAMMVSCSEESPVEGLINTKSSVVAINTEVTAGNTKTITLTVNNKTLQLQVQSNLVVANGVEYRHCMLTMLNGTGFFPVVTNSIYIKGMDAGAEISAGAFSSQLYIAYLYSTSRAVNTTAYSYTSNNGMRFDQRYFVPLKVMPASNGEAPIYAYLEVSIAADKFILHKMVYRNVGNLAAGGE
>NZ_LR632929.1|WP_142677874.1|2543490_2545665_-|hypothetical-protein
MIRYLLTVALFVAGISVCQGQLSVYICSENGRIGWAVGYDNTNGIRDNKAYQSCRDYGGKYPVLKMSHNGPGCYAIVEGRNDKGEKKYGMGSGAKTTEEAHSIARQQAVFIGAIESSLSSVTSGCSYPPPPKAVEKRVPVWSDWTGEACTYLEYRTKVLDGYDWNYQVHVYIQVRSKFKIPVTYIFELADGNGKVHFGEQRANNPGEEIEFVHKMSEKIIKKIRIRDLRSAKTKKPINCEDADGGKKPLRPGEYDNLQEAVAEYYKLLPQLRESVTKTSNYEHTIKILNSKESDEYKLSTVNNSISYLRSFLEQPGNKPAAPQNAPDLSGNILELSRKEISLINEIRTLDPNADVKAWDGNPGDNPALTVQRKKENILQLESQLGRVSSKAAADKAEKERQKNTFNSFMQKGDDAMNSKGYPLAMQHYQAAINSTKDVNDQATARARYNQAQEAQQSKDREIRVADAKERDKSEDITYGAAATATAGMMALLKDGYSSKSFAAKFLLGLGYEHSPILSNGAGKSYVEERDLFTLHTGFIIGVLNNKAVSFYLKPQGSLGMSAFASGISGGAVSYGATGVLQVAVKKHSKFNVFAEGGWFHRDGNYTYDADARNNTATDDVRKGKMKYTKLVYGGGLMLRWINKQDGKETFIRPGVFFEKPSFFTSAVKPVLSMHMQVYIHSAIMLDLGYTPNTYIPGELTFPATLEKKDVNAYSIKLIRMGRLY

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Crispr_ID: NZ_LR632929_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LR632929_2

6096099-6096200

Orphan

Consensus_repeat	Method
GTACTCGAACCTACATACCTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LR632929_2

>merge|NZ_LR632929|2|6096099-6096200|CRISPRCasFinder
GTACTCGAACCTACATACCTCGCAGAAAAACAAAAAGGGAACACCTTTTACAGTATTCCCTTTAATCGTGCGGATGATAGGACTCGAACCTACATACCTCGC

>NZ_LR632929|2|2|6096099-6096200|CRISPRCasFinder
GTACTCGAACCTACATACCTCGC	AGAAAAACAAAAAGGGAACACCTTTTACAGTATTCCCTTTAATCGTGCGGATGATA
GGACTCGAACCTACATACCTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LR632929.1\|WP_142680479.1\|6107409_6107865_+\|cytochrome-C-biogenesis-protein	unknown	unknown	gnl\|CDD\|378661
NZ_LR632929.1\|WP_142680477.1\|6105582_6106563_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142680471.1\|6094838_6095981_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239264
NZ_LR632929.1\|WP_142680468.1\|6089667_6090792_+\|DUF4855-domain-containing-protein	unknown	unknown	gnl\|CDD\|374395
NZ_LR632929.1\|WP_142680469.1\|6090810_6093822_+\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|225044
NZ_LR632929.1\|WP_142680870.1\|6082023_6085251_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NZ_LR632929.1\|WP_142680466.1\|6087230_6088430_+\|DUF4959-domain-containing-protein	unknown	unknown	gnl\|CDD\|374513
NZ_LR632929.1\|WP_142680480.1\|6107967_6110007_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|226685
NZ_LR632929.1\|WP_142680475.1\|6101732_6102968_+\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|223225
NZ_LR632929.1\|WP_142680464.1\|6079040_6080231_+\|AGE-family-epimerase/isomerase	unknown	unknown	gnl\|CDD\|238153
NZ_LR632929.1\|WP_142680871.1\|6102972_6103893_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|273800
NZ_LR632929.1\|WP_142680474.1\|6099781_6101044_+\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_LR632929.1\|WP_142680467.1\|6088452_6089658_+\|DUF5013-domain-containing-protein	unknown	unknown	gnl\|CDD\|379841
NZ_LR632929.1\|WP_142680869.1\|6080255_6081482_+\|glucose/galactose-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_LR632929.1\|WP_142720047.1\|6104052_6105567_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LR632929.1\|WP_142680470.1\|6094210_6094756_+\|LEA-type-2-family-protein	unknown	unknown	gnl\|CDD\|377000
NZ_LR632929.1\|WP_142680473.1\|6097456_6099703_+\|RelA/SpoT-family-protein	unknown	unknown	gnl\|CDD\|223394
NZ_LR632929.1\|WP_142680465.1\|6085277_6087203_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|369630
NZ_LR632929.1\|WP_172621708.1\|6101141_6101672_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235640
NZ_LR632929.1\|WP_142680478.1\|6106664_6107357_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140

Protein	Function_ID	Function_description	E-value
NZ_LR632929.1\|WP_142680479.1\|6107409_6107865_+\|cytochrome-C-biogenesis-protein	gnl\|CDD\|378661	pfam11412, DsbC, Disulphide bond corrector protein DsbC. DsbC rearranges incorrect disulphide bonds during oxidative protein folding. It is activated by the N-terminal domain of DsbD, a transmembrane electron transporter. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm.	1.63046e-05
NZ_LR632929.1\|WP_142680471.1\|6094838_6095981_-\|redoxin-domain-containing-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.03119e-25
NZ_LR632929.1\|WP_142680468.1\|6089667_6090792_+\|DUF4855-domain-containing-protein	gnl\|CDD\|374395	pfam16147, DUF4855, Domain of unknown function (DUF4855). This family consists of uncharacterized proteins around 400 residues in length and is mainly found in various Bacteroides species. Several proteins are annotated as glycerophosphodiester phosphodiesterases, but the origin of this annotation is not clear.	3.67878e-105
NZ_LR632929.1\|WP_142680469.1\|6090810_6093822_+\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	5.16625e-34
NZ_LR632929.1\|WP_142680870.1\|6082023_6085251_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_LR632929.1\|WP_142680466.1\|6087230_6088430_+\|DUF4959-domain-containing-protein	gnl\|CDD\|374513	pfam16391, DUF5000, Domain of unknown function. This family around 200 residues locates in the C-terminal of some uncharacterized proteins in various Bacteroides and Parabacteroides species. The function of this family remains unknown.	4.31793e-48
NZ_LR632929.1\|WP_142680480.1\|6107967_6110007_+\|thioredoxin-family-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	3.40694e-42
NZ_LR632929.1\|WP_142680475.1\|6101732_6102968_+\|chorismate-binding-protein	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	4.54769e-119
NZ_LR632929.1\|WP_142680464.1\|6079040_6080231_+\|AGE-family-epimerase/isomerase	gnl\|CDD\|238153	cd00249, AGE, AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.	2.01195e-116
NZ_LR632929.1\|WP_142680871.1\|6102972_6103893_-\|TIGR01777-family-protein	gnl\|CDD\|273800	TIGR01777, Hypothetical_UPF0105_protein_Rv2216/MT2273/Mb2239., TIGR01777 family protein. This model represents a clade of proteins of unknown function including the E. coli yfcH protein. [Hypothetical proteins, Conserved].	3.59278e-106
NZ_LR632929.1\|WP_142680474.1\|6099781_6101044_+\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_LR632929.1\|WP_142680467.1\|6088452_6089658_+\|DUF5013-domain-containing-protein	gnl\|CDD\|379841	pfam16389, DUF4998, Domain of unknown function. This family around 200 residues locates in the N-terminal of some uncharacterized proteins in various Bacteroides and Parabacteroides species. The function of this family remains unknown.	6.1172e-60
NZ_LR632929.1\|WP_142680869.1\|6080255_6081482_+\|glucose/galactose-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.15904e-122
NZ_LR632929.1\|WP_142680470.1\|6094210_6094756_+\|LEA-type-2-family-protein	gnl\|CDD\|377000	pfam03168, LEA_2, Late embryogenesis abundant protein. Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.	0.00106376
NZ_LR632929.1\|WP_142680473.1\|6097456_6099703_+\|RelA/SpoT-family-protein	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_LR632929.1\|WP_142680465.1\|6085277_6087203_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	2.23066e-57
NZ_LR632929.1\|WP_172621708.1\|6101141_6101672_+\|hypothetical-protein	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	3.95495e-08
NZ_LR632929.1\|WP_142680478.1\|6106664_6107357_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	6.29869e-132

>NZ_LR632929.1|WP_142680471.1|6094838_6095981_-|redoxin-domain-containing-protein
MTSFHQIQRILLSAILLCCSATAFANDSSRIRFILHPGLDSNRLTISVHDGIQEQRLKLNETHTWSGRLFSPYGHIFVAYPGQDTAGFVKRIFFSKGNTIVSVTPGHSVNEPFHIDEKVSKNILFYEKMGGAQLDAYVKEKVDSQMAFYYRNKSRFGADGNLVQQMFDLGDTVLLKKLEFIRQHPSLYASFWNFMTNISRTEVISPDSMLATYNKIFPEKYKTSKAAEYMVTVLHNKIAITTQSLFPEFSVTDINNNTITSESLRGQYVLIQFWASWCMPCIKEMPVLKGIHEKYRQAPIKILSISVDQNAQAFRTAITKHAMNWTQVHGDLRLYHAMGYTPIPQLYLLDKTGHVVYNNLKGTDIDLRLLQSILSEKLPD
>NZ_LR632929.1|WP_142680470.1|6094210_6094756_+|LEA-type-2-family-protein
MALLESAQCYQSITFLKDKFMNKRRRIIPVLLLAGAICSLLLGSFTGCRVFKKPEPRLPARLVVRVFNITPERAALKIDGAYYNPNNYAFTFKGGDLDLMLDTFHLGRVHLDTVIEVPAHAVFNVPVVIEPDFEKLGQSGINLGDSVRISFKGDMKGSVGVFSRTIQITYEGIHYLDLQLP
>NZ_LR632929.1|WP_142680469.1|6090810_6093822_+|PQQ-dependent-sugar-dehydrogenase
MRKLWMFGCMLALAACSRKSPGNKVLLLQSAGSTETIISATKATAEANGWEIVEGNKYSLHPDSLQGVRTIVSNWSYPDSLDHRQLNALQRFLEAGGTWAVAKDSVFKLKGWPWLNDLANNKQVFMSEASAIDAAILKAGDEAAGLDYAACTTTVIPENNRYTYTMLAQGLDEPLQLAVLPGNDVMFAERKGAVRLYRAKEKDVITLAQFDVYSGLEDGLLGVALDPEFDKNHWIYFFYAVGGDVPVSRLTRMEMRDQKLLPETEKTLLEIPTQRKHCCHSAGYIEFGSDNLLYLSTGDNTNAEETEGYTPVDERPGRELADDQATSASSADLRGKILRIRPKADGTYEIPEGNLFPKDGSKGRPEIYVMGCRNPFRFSVDRKNQYVYWGDVGPDTKVPGSEGTISYDEVNQARKPGFFGWPYFLGENEGLPKWDFATKTEGPKPDPAKPMNTSPNNKGVKELPPAQPAMIWFGDGPSAKFPLVGKGGQSVMAGPVYYADQFKDAEYKLSDYYDGKLFIYDWVRRWIMAVTLDKDHNYVRMEPFLDHLAPAAPIDLRFAKDGSLYMLEYGTNWFSRNMDARLVRITYAAGNRRPVAGIAADELTGPAPMTVNLSAKGSADPDRQDNLHYKWNIEGKEYTDSAVAHVFGKPGVYKVMLTVTDDHEAFDTSSLFIKAGNAPPTVEIETDANKTFYWDNSIFPYKISASDKEDGTVPPEKIKVGFSFIPYGRDMAGVFTQGGTLPSPKGKELFYSQDCKACHTENTVSVGPSLMDIAGKYAHNEKNTALLAYKVIHGGSGVWGNRSMSAHPGMPVEEAKMIVDYILSLKSAGTTLATQGTLVLKDHIGKPASGVYLMSARYTDGGANGIEALTGQRYIMLRHPKLEAEDRDFDHNMHFLNYISQLLSYGNAKDGSYFMYNNIDLTRVTRARFRVMLQGAGGTIELRVSAKDGPKVCELKVPAGNKGEWVELEAPVQNSTTPQDLYFVFSNPGQTYLFSLDWTFFMQ
>NZ_LR632929.1|WP_142680468.1|6089667_6090792_+|DUF4855-domain-containing-protein
MIKLTISGMMALWMTVAGLATTSCHKAAQETTTTKLPEAGKPAPAPLPAYYISDLALIYQGGTHRFPWTADQLKPYLFRNSTAGFEWLYDGFLFIEFKDNLGYEYAEGYGQQPAGKAQWLWLLQRNFEQGKAIHALEGMLDSLKANGQTPKRKRKVVLTLPEPIGATANWGELNGRQLNFANIADRVAACQWYIDTAMTMWNAANLEHLELSGFYWVAEQNTGAVEILPTVSAKIHERNKRFYWIPYYGAAGAAQWKSMGFDIAYQQPNYFFDLNSPYSILTGAIRFAEQNKMALEMEFDNRLLTNTGYQKKYTDYINEFEKAGAWSNLPVAYYEGGGAWYEMSLQTDPVIVGLYKRLADIIAKRHRDTDARSR
>NZ_LR632929.1|WP_142680467.1|6088452_6089658_+|DUF5013-domain-containing-protein
MKKLMLSILTLAAALAWAGCSKIDDYRDFAAGKMQKYAGKVDSLKLFPGDGRIVLSWLLIADPNVNKVVIKFNGADSVTVPVSRTEKPDSITYEFSPLQEATHNYTVITINTFGERSVPVYISGKSYGENYTKTLLNRPLEDAWLAENGNATLKWGSKEETCLGVKISWTKNDGSKAERYLADVTPEIVLEDYKPGTPFTYRTLFKPEPLAIDTFYAAPVSMLLKREVVTHKYLKNFRRPFAIGEWDGERWGTPAYWNVSASAKTRGGLYGGFDNLSGSAAFGFEKWDGETAINNGKTSQTVTLPAGTYEVVLSLGAGEWYLGTRGDDVRYLAAATGNTLPDHNAMNTALAYKNFSGLTRSSIRFTVDGTSPVTIGFVMNWVSYAAQYFRAQEIILYHLPK
>NZ_LR632929.1|WP_142680466.1|6087230_6088430_+|DUF4959-domain-containing-protein
MKKFPIILSLGALLFSCKEEKPLTPLANDPNPPGQVANVQIRPEPGGASISYALPKSQNLSYVTAEVTTRQGTVRTFKSSFYTNQIRIEGLGDESEYEVRLYSVNGAEVRSEPVVKKFTPTLPPYLKVFRTLQLLGDFGGIRLTYLNPDKQSLQAILIAPDSLGRIKQINAATLGEEAGRVNFRGLKDEETRFGMYLEDRWGNRTDTLFANLTPLFETQLDKSKFRNYRMPNDSKLVDQWNIAVAFAFDGKWSSVWGSPYDGNGNNWLNISTDQLTVDPTWITFDMGAKSKLSRFRINHYYRFINRGMKKYEIWGSNDPKPDGSWDSWTKLIDYEQKKPSGLPYETYNDADAAAWLLGDQADFPLTAPAVRYLRIRCLENWQGTGDLSFSEITLFGQPM
>NZ_LR632929.1|WP_142680465.1|6085277_6087203_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKRNFRFILYGAVLATALGTASCEKGFLDVVPDNVPTLDDAFSNKTEAEKYLRACYSFLPSVDPVSNIQFFGADDMWTYRYNHYSYQSPWKIALGEQNAGDPWVNFWDGGNHGMSYWVAIRECNIFLENMYENGTTRRIPYLSPEDQKRWIAEVTFLKVFYHFYLMKLYGPIPIVDVNIPVSASPEEVKVFRQPVDQVAQYLINELDKVIPMLPPVVKDRAEELGRITKPAAMMLKARILLAWASPLFNGNADFAGFKDKKGSPLINPTYDANRWTLAAKAAEEAVAECAGAGIQLFGFSSPFVTITNGTRVQLSTSGALNTRENPEAIWVLTGRAEQTGTLQTHCAPKYLMSSRNNYAGAYMSPTIKMAESFYTKNGVPISEDKTWDYQGRYNLRVATHDERLHIQEGYTTVSMHYDREERFYASLAFDGSRFFLEGNKSDDLASNIQAKFGQTQGKTSEEFYCVTGYFPKKIINYKFNQTDQGVTTEKWPWPEMRLADLYLMYAEALNEAGNGTRAIEYLDKVRERAGLKGVVESWSNFSNQPAKFTTKEGLREIIRQERLIELSFEGQRLWDLRRWKKAVEYFNQPVEGWDIVQKSAADYYRKKQLYMQRFVAPRDYLWPIKQSNLIINTNLLQNPGW
>NZ_LR632929.1|WP_142680870.1|6082023_6085251_+|SusC/RagA-family-TonB-linked-outer-membrane-protein
MPYRAALRVKLTLGLLFAGGAAIAAIPEESYPEHAKSSIHAYAYPAISHTLRDTGIVVKGRVTDTTGMPLPGVSITLKTDPLKGVQTNGSGEFTIKLTSPATLVFSFMGYIKHEQAVSSSGSVEVQLKSSDKMLGEVAIVAFGTQKKTTMVGSVTTINPKELKGPTSNLTTMLAGRLAGVIAMQTSGEPGKDNADFFIRGVTTFGSGKVNPLILIDGRESSPSDLARIQPDDISGFSILKDATASSLYGARGANGVILVATKSGNIGGTRFNVRGENSNSRNTQRMKLADNITYMRLANEAAINSGAMNRPYTEDDIRHRVNKDNKYVYPDNDWMGLLLKSSTNNQRYNFNVSGGVERAQYYVSGTYNIDNGLLRTIDDNKFNSNIKARNYEIRSNINVKLTKTTEAIIRTTGRFYDYRGPQGGSNALLTNVTRANPVAFPAYFPASFAPDERNPLFGSARMPNSNLMMNPFADAVSGFTQNNNSTLIAQLELKQDFGFFLPGLSARVMAYTSRYSEFSLNRRFYPFYYSVTVDPEEGVRGLEPLNPGGGTNYLDFQGGDKTASMYTYMEAALNYNRTIGEKHNVGAMLITLLTNKSDANAGSLALSLPRRNQGISGRFTYDYDSRYLMEFNFGYNGSERFDKRNRFGFFPSVGGGWNVSEEKWFEPFLNVVSRLKFRGTYGVVGNDQIGADWDRFFYLPNLSLGGGPGYMFGDKWSYGGGGTIIYRYPNPFITWERAYKANIGVELEMFKNFNLQADIFKERRTDILLSRANIPSTMGLRSIQQANVGIGEGKGIDMTLEYKRNFSQHSWLNVRGTFTYATTKIIENEEPEYGKDLQHLRREGHSDQVRWGYVAERLFTDEHDVANSPRQFGIAGLTGGDIKYVDINGDGEVNERDLVPLGHPVRPEINYGFGFTFKYKAFDISTFFQGSARSSTFIDAGGIAPFIQQENTQRGLLKVIADDHWSESNQDPYAFWPRIRSVGWPNNTVMSSWWLRNGSFLRLKTVELGYELPDRYLRRMHLNALRFYVNGLNLLTFSTFKLWDPEMGGVQTSGYNNAFNYPVQRVINAGINIGF
>NZ_LR632929.1|WP_142680869.1|6080255_6081482_+|glucose/galactose-MFS-transporter
MPEMSVRNEIPAGKSYLPALLSLAVLYFMLGFITCLNDTLIPYFKEGFTLSYTESSLVQFYFFAVYGIFSIPAGRIIGRIGYRKGMVIGFLVAAAGALLFYPAALLHAYYLFLGALFVVAVGIVFMQVSANPYIVVLGRPETASSRMNLIQSVGSIGTIVAPLFGAAVILPNMTAGGSSAVKYPYAGIALVLVVISLILWKMKLPEVKPAIEESSAGGGSALSFRNLKLGALAIFFYVGAEVAVGSFLTNYIADTLAITEQEANRYVSFYWGAMLAGRLAGVGILRFVQPQKLLALNGMAAIALILISIFSSGTLAVWSLISVGLCNSVMFAIIFSLSVNGLGKHMTQASGILSAAISGGAVIVVLQGWLIDSASWATAFIIPVLCYAYIVFYGLNGFRSRSRIAKSV
>NZ_LR632929.1|WP_142680464.1|6079040_6080231_+|AGE-family-epimerase/isomerase
MNLIQYAGQYRNNLLNDVIPFWLKHSIDEESGGFYTCLDRDGKVFDTDKFIWLQGRQVWTFSMLCNRLGMREEWLRTAEHGADFLLRHGRDANKQWYFSLTREGRPLIQAYNIFSDCFAAMAFAQLGKATGSAEYNQLALDTFQNILTRFNKPKGNYSKAVPGTRPLKGLSLPMILSNLVLEVEHVLPAETVDSTIRECVRSVMEDFYDPATGLIMENVTPDGRLSDSFDGRLVSPGHSLESMWFLMDIADRLKDEALMRRCTDIALNMLDFGWDKEFGGIFYFMDAKGRPPQQLEWDQKLWWVHLEAIVAMLKGYHYTGDARCLTWFKRLHEYTWKHFHDPEFGEWFGYLNRRGEVLLPLKGGKWKGCFHVPRSLFLSWKTLEEIAVSQTVTVQP
>NZ_LR632929.1|WP_142680473.1|6097456_6099703_+|RelA/SpoT-family-protein
MDTVTVQKYNLDEEQEKKEIVRHYRALLRALKPRLKKGDRELVRTAFEIAADAHKDMRRKSGEPYILHPLAVAQITVEEIGLGVRSAICALLHDTVEDTEVTLEDVEREFGTEIAHIVDGLTKISTVIDSNTSTMQAENFKKILLTLADDPRVILIKLADRLHNMRTLDSMSREKQLKIASETVFIYAPLAHRLGLYNIKSELEDLAMKYTEQDHYREIARRLKETKRERTRYINEFIKPIKEVLQEEGFQFEIYGRPKSIHSIWNKIKTKGVQFEEVYDLFAIRIILDSAVEKEKADCWKVYSIITDFYHPSPERTRDWLSNPKGNGYEALHVTVMGPNGKWVEVQIRSKRMNDYAEKGVAAHWRYKEGNSNVQESKFEQWFSQIREILSSPDTNTLDFLADFKSNLFTEEIYVYTPKGDLKILPVSSTALDFAYSIHSAVGNKCIGAKVNYKLVPLSHKLRSGDQVEIITSNKQKPSEDWLNIVLTAKAKGKIKDALKEEKRKVAMDGKDILHRKLDHMKASASQYNINELVQFYKQPSPLDLYYQVAVKNIDLRELKQFNVLGDKLEPPKPVKPVEVVHPEEHHKSREKESNKKDAELIIFGESSDKIAYKLANCCRPIPGDDVFGFVTASEGLKIHRTNCPNAAQLLAHYGHRVVKTKWVKNREISFLTGLKIVGMDDVGVIHKITNIISGELKINIAGLTIESKEGLFEGLIKVFVHDKDELEELVNRLKGLDGIQSINRLED
>NZ_LR632929.1|WP_142680474.1|6099781_6101044_+|adenylosuccinate-synthase
MVDVLLGLQWGDEGKGKIVDYFAGKYDIIARFQGGPNAGHTLYVNGQKVVLHTIPSGVFHGNTLNLIGNGVVLDPVTFRKECQKVADLGIDLSKNLFIAEKTHIIVPTHRALDKASELSKGQEKIGSTLKGIGPAYMDKTGRNGLRVGDVLSKDFRQQYEKLKAKHLQLLANYNFSEDIAEWENEFWEAVEFLSKMNIVNGEYWLNGYLKAGKKVLAEGAQGSMLDVDFGTYPFVTSSNTISAGVCTGLGLAPKWIAEVIGVTKAYCTRVGGGPFPTELEDETGERLRVAGSEFGATTGRPRRTGWIDLVALDYTCMLSGVTQLVMTKCDVLDEFDTVSACTAYTIDGQTTREMPYNICGAAIEPVLESFAGWSEPTAKSERYDALPLEMKKFLSFVEDYLKVPVQYVSNGPGRDQILEK
>NZ_LR632929.1|WP_172621708.1|6101141_6101672_+|hypothetical-protein
MKSKSDKEKETKKTTSPQTDKASEKKAAAKTKKEVDEDDDEDEEESPRKSAASKKSDKLTAKSKKEDDDDDDDDEEDDDAPKKGRKPAKSGSRKKDDDDEDEDDEDGGDDDDDAWEKGEDEDYDPDFEEFDMPKPKSKRGRPSKKSADDDDDLSIDDEFKDMDMFNDRFDDDDDDF
>NZ_LR632929.1|WP_142680475.1|6101732_6102968_+|chorismate-binding-protein
MLSWGNRFNICCFLDNNNYRLAGSRAEALLAADAVETLECPAGAAFEKLRCFHDENPGWLFGHLAYDLKNETEKLESHRPDGIGFPDLSFFRPRYLLRLTAEALEISGENISEKEARDIYSDLITQPRIVPAAPPPFVSQARIQRAEYLSAVRALQEHIRKGDCYEINFCREQYALARLPEPAAIFLRLNGLSPAPFAAYYRRGSRYLACSSPERFLRKEGSNLTSQPIKGTIRRAASPEEDEALLQALRNSPKEQSENVMVVDLVRNDLSRTAVRGSVHVSELFGIYSFPQVHHMISTVTATLDPAFHFTDAIKNAFPMGSMTGAPKVKVMQLIEQYEQTRRGLFSGAVGYITPEGDFDFNVVIRSILYNADNHYISFQTGSAITFYSNPEKEWEECLLKARALRTALGI
>NZ_LR632929.1|WP_142680871.1|6102972_6103893_-|TIGR01777-family-protein
MDTVLITGGTGMIGRALTDFLLDRGYRVIVYTREMRDSTHPNLRFALWDPARKTLDTTALQEANQIVHLAGTNVATGRWTESRKQEILDSRVQSSQLLFEQLSHLPNKVRTIISASATGFYGEFEGTPFTETDPPAQDYLGKTCVAWENSVRQMESLGKKVIILRTGIVLSNKGGALKEFIRPVKLGFATVMGSGHQFISWIHLQDLVRLYFNALANDQLNGIYNAVSPFPVTNQELVTQLARAVKGKSFITVNIPAFALKLAMGEMSVEVLKSVKASSAKIQTTGFQFSYPRISDALAQLVTSGD
>NZ_LR632929.1|WP_142720047.1|6104052_6105567_+|hypothetical-protein
MRFRHILPFFALMLCASLAMAQKITYSEPERDDYKTTEFEIVGKVSGNILVYKADRGDYNISVYDNGMQLVDRVKLDFLPKKLISVDFVSYPDFAYMIYQFQRKDAVYSFVGRVNGKGQFLEAPVMVDSTRIGFYSKENKIYSVETSEDKGRILIYKINQDKEDNNVFYTFLYDSSFNLINNSRVGLPMEGKKQFLNNFHLNNDGDLFFTKLERGAGRDYITNGFVIVKRATTDAFETVPFEMKNLLLDEVKLKLDNADKQALVTAFYYKQKRGNVEGMYLLRLDYANNQRLFEKQVVFSPELKQQAKGDASTNAAFNDYFIRKIVNTSNGGFMLAAEAYYTTSRSQPWNRWNYMYGGYGGYYPYYYSPYSPYYYNPYGWNDGQGTRYHYDNIAVMAFDDKGDLTYSNFVHKSQFDDGADLYLSYMLVNVGSELRFLFNELERRQYVLTENTLGPDGKVNRKPTLRNLDKGFTWMPRYGKQISGRTVLVPCIYRNYICFAKIDF
>NZ_LR632929.1|WP_142680477.1|6105582_6106563_+|hypothetical-protein
MIKFFRSGNPLTVLLLFLYMLFIKFYYLLHPSTYLADGSEGLLYKWLVNWLAGMVGPSPVFFTFLALMLLFIQSLLLARIVNNHRLFAKDTYLPAMSYLLLTSLLQSWNVFSPALIVNTVMLWIFSSITDLYMRNSARDVSFNIGFALGICGLFYFPSVLFVALLFLSLLIMRAFRLAEWIIGLMGIICPFYLLGTWLFLTNRWELISDLWNIRANLPVITDYKVWGALIGGMLFFVTGWLMLQRTFKKMLIQGRKIWATVVIYVVVAMLVPLFSGHFSPTYWILAVMPVSLFAGNVFWTITNNTVANAVHILVLAYVIIMQYFSN
>NZ_LR632929.1|WP_142680478.1|6106664_6107357_+|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MKFGVVTFPGSNCDQDMIDALRTDLNQEVIALWHKDKDLSMFSTEDCILIPGGFSYGDYLRCGAIAKFSPMMQSVVEFANKGGRVIGVCNGFQILCEAGLLPGALLKNENQQFVCKNVFIKSENTVASLTKEVTGRPLMIPVAHGEGRYYADEATLDELFANNQVIFRYCDEFGNIVDSANPNGAIRNIAGICNKERNVFGMMPHPERATSEVLGNRDGQLIFQSLLNNN
>NZ_LR632929.1|WP_142680479.1|6107409_6107865_+|cytochrome-C-biogenesis-protein
MKKLLVAMMLFALPVLALAQDMNPVKWEFTSKKVSAQEYEVIAKATIDGGWHLYAQEAGEGPVPTSFKFAKNPLVAPKGKVAESGKLHKAFDKNFNSELKYYENTVTFIQKVTVKGKAVTKVKGSVEFMVCDDHQCLPPTEVEFAVNVGGK
>NZ_LR632929.1|WP_142680480.1|6107967_6110007_+|thioredoxin-family-protein
MKYIVSMISAFLLLFGTSAIAQEPGAAPVHAKWEFSADKKAPGEYILKFTAKIEPGWKLMAASMGDDDPNTRIVFDSLSDSRVRIQSLADVTAPLTAKEPMLEDMEIKYFENEAVITATIKYVADSIKDLRGNVTFFVLKGEEILPEEAPFTFKADAAGTLTGTTGGLEVNKEAADGLKRKTIDLNNPLVKIGGIGNEGQSSIWLIFVLGFLGGLVALVTPCVFPMIPLTVSFFTKSSQDRKAGVFNAVMYGFFIFLIYVLFSLPFHIAGKADSAIFNNISTNVWLNLIFFVVFVVFALSFFGLFEITLPSGLASKADSKANKNSLVGIFFMALTLVVVSFSCTGPIMGSLLAGAGSAASGGSGAWMLTAGMAGFGIALALPFALFALFPNWLNSLPKSGGWLTSVKVVLGFVEVALAIKFLSNADLVTHWGILHRETFFLIWIIIFGLTTAYLFGLIRFPHDSPIKKLGKVRIFFGVLFGAFTLYLIPGITNTKYARLRLMSGFAPPMSYSWYGHGTAAEKGAVEPDIINEYEKGLALAKEKNKPVLLDFTGWACVNCRNMEENVWTDPEVHSLIKDNYILISLYTDDRKKLGENDQFLFQSDEGWSKKIVTIGDKYATFQRVNFINQSQPLYVLITPDEQLLTLPVAYTPDIQEYANWLKAGLDGWKKVNTTAQKAN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

109046 : 121303

Bacillus_phage(50.0%)

tail,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142676043.1\|109046_110495_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
WP_142676044.1\|110514_112536_+\|tail	phage tail sheath subtilisin-like domain-containing protein	J9PVC2	Bacillus_phage	3.0e-25	38.0
WP_109699995.1\|112566_112998_+\|tail	phage tail protein	T2KSM5	uncultured_phage	1.4e-28	54.2
WP_142676045.1\|113001_113514_+\|tail	phage tail protein	NA	NA	NA	NA
WP_142676046.1\|113526_113709_+	hypothetical protein	NA	NA	NA	NA
WP_142676047.1\|113710_114487_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_142676048.1\|114483_116220_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_142676049.1\|116226_116517_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_142676050.1\|116537_116939_+	GPW/gp25 family protein	A0A0K0KW55	Prochlorococcus_phage	2.6e-05	30.5
WP_142676051.1\|116940_120210_+\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_142676052.1\|120229_121303_+\|tail	tail fiber domain-containing protein	U5PSK6	Bacillus_phage	3.1e-05	29.2

DBSCAN-SWA_2

193575 : 199008

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142676099.1\|193575_194229_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.3e-34	38.9
WP_142676100.1\|194232_195081_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	5.2e-40	40.9
WP_142676101.1\|195092_195653_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	1.0e-28	41.9
WP_142676102.1\|195652_196708_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.0e-86	52.4
WP_109700053.1\|196733_197681_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	8.3e-71	44.9
WP_142676103.1\|197673_199008_-	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	7.0e-84	39.0

DBSCAN-SWA_3

5263956 : 5274161

Rhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142679843.1\|5263956_5266575_-	DNA ligase D	A0A068CDF3	Rhizobium_phage	1.7e-41	33.9
WP_142679844.1\|5266571_5267345_-	Ku protein	A0A249XRB2	Mycobacterium_phage	3.1e-31	31.6
WP_142679845.1\|5267571_5267940_+	hypothetical protein	NA	NA	NA	NA
WP_142679846.1\|5267972_5269010_-	DNA topoisomerase IB	A0A0U2TSJ7	Niemeyer_virus	2.8e-35	30.7
WP_142679847.1\|5268984_5269851_-	glucose 1-dehydrogenase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	1.1e-50	42.5
WP_142679848.1\|5269918_5270551_-	DUF892 family protein	NA	NA	NA	NA
WP_142679849.1\|5270568_5270976_-	hypothetical protein	NA	NA	NA	NA
WP_142679850.1\|5271261_5272674_+	CHASE3 domain-containing protein	W8CYF6	Bacillus_phage	1.3e-11	25.7
WP_172621654.1\|5272724_5274161_+	PAS domain S-box protein	B5LWN0	Feldmannia_species_virus	3.0e-08	24.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LR632929

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection