CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	4 crisprs	DEDDh,cas3,WYL	2	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS483486_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483486_1

381150-381234

Orphan

Consensus_repeat	Method
AAGCCCACCCTACAACTACTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483486_1

>merge|NZ_LS483486|1|381150-381234|CRISPRCasFinder
AAGCCCACCCTACAACTACTAAAGCCCACCAAAATATCTTACGATTGTTTGTTGGTGGGCTAAAGCCCACCCTACAACTACTAAT

>NZ_LS483486|1|1|381150-381234|CRISPRCasFinder
AAGCCCACCCTACAACTACTAAA	GCCCACCAAAATATCTTACGATTGTTTGTTGGTGGGCTA
AAGCCCACCCTACAACTACTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483486.1\|WP_005654546.1\|384847_385030_+\|shikimate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|227024
NZ_LS483486.1\|WP_038439524.1\|387405_387942_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|223625
NZ_LS483486.1\|WP_111722589.1\|381443_384587_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273799
NZ_LS483486.1\|WP_005690169.1\|374721_375723_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|129430
NZ_LS483486.1\|WP_105905590.1\|385479_387396_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236729
NZ_LS483486.1\|WP_105905588.1\|379296_381042_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|227321
NZ_LS483486.1\|WP_005694621.1\|373803_374244_-\|FMN-binding-protein-MioC	unknown	unknown	gnl\|CDD\|181608
NZ_LS483486.1\|WP_005650837.1\|385022_385319_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_LS483486.1\|WP_011272147.1\|390757_391522_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NZ_LS483486.1\|WP_011272148.1\|390197_390761_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_LS483486.1\|WP_105905587.1\|377645_379304_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|224055
NZ_LS483486.1\|WP_105905586.1\|376530_377562_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|226080
NZ_LS483486.1\|WP_038439523.1\|387957_388509_+\|Sua5/YciO/YrdC/YwlC-family-protein	unknown	unknown	gnl\|CDD\|182603
NZ_LS483486.1\|WP_011272149.1\|389330_390083_+\|DUF3800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378919
NZ_LS483486.1\|WP_005655267.1\|371917_372595_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_LS483486.1\|WP_105905591.1\|388512_389319_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|161904
NZ_LS483486.1\|WP_005650823.1\|376213_376534_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|226080
NZ_LS483486.1\|WP_005661200.1\|375917_376226_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_LS483486.1\|WP_013526377.1\|373372_373807_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_LS483486.1\|WP_005687916.1\|372591_373068_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
NZ_LS483486.1\|WP_005654546.1\|384847_385030_+\|shikimate-5-dehydrogenase	gnl\|CDD\|227024	COG4679, COG4679, Phage-related protein [Function unknown].	1.66598e-08
NZ_LS483486.1\|WP_038439524.1\|387405_387942_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	gnl\|CDD\|223625	COG0551, TopA, Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair].	1.45844e-31
NZ_LS483486.1\|WP_111722589.1\|381443_384587_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273799	TIGR01776, Lactoferrin-binding_protein_A, TonB-dependent lactoferrin and transferrin receptors. This family of TonB-dependent receptors are responsible for import of iron from the mammalian iron carriers lactoferrin and transferrin across the outer membrane. These receptors are found only in bacteria which can infect mammals such as Moraxella, Mannheimia, Neisseria, Actinobacillus, Pasteurella, Haemophilus and Histophilus species. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.78049e-101
NZ_LS483486.1\|WP_005690169.1\|374721_375723_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|129430	TIGR00330, Fructose-16-bisphosphatase_class_2, fructose-1,6-bisphosphatase, class II. This model represents GlpX, one of three classes of bacterial fructose-1,6-bisphosphatases. This form is homodimeric and Mn2+-dependent, and only very distantly related to the class I fructose-1,6-bisphosphatase, the product of the fbp gene, which is homotetrameric and Mg2+-dependent. A third class is found as one of two types in Bacillus subtilis. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase. [Energy metabolism, Pentose phosphate pathway].	0
NZ_LS483486.1\|WP_105905590.1\|385479_387396_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NZ_LS483486.1\|WP_105905588.1\|379296_381042_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_LS483486.1\|WP_005694621.1\|373803_374244_-\|FMN-binding-protein-MioC	gnl\|CDD\|181608	PRK09004, PRK09004, FMN-binding protein MioC; Provisional.	5.81551e-89
NZ_LS483486.1\|WP_005650837.1\|385022_385319_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	4.09836e-10
NZ_LS483486.1\|WP_011272147.1\|390757_391522_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	1.39254e-96
NZ_LS483486.1\|WP_011272148.1\|390197_390761_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.48267e-117
NZ_LS483486.1\|WP_105905587.1\|377645_379304_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.89056e-126
NZ_LS483486.1\|WP_105905586.1\|376530_377562_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|226080	COG3550, HipA, Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only].	3.42608e-84
NZ_LS483486.1\|WP_038439523.1\|387957_388509_+\|Sua5/YciO/YrdC/YwlC-family-protein	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	8.25349e-87
NZ_LS483486.1\|WP_011272149.1\|389330_390083_+\|DUF3800-domain-containing-protein	gnl\|CDD\|378919	pfam12686, DUF3800, Protein of unknown function (DUF3800). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 215 and 302 amino acids in length. There is a DE motif at the N-terminus and a QXXD motif at the C-terminus that may be functionally important.	0.00880889
NZ_LS483486.1\|WP_005655267.1\|371917_372595_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	7.98596e-120
NZ_LS483486.1\|WP_105905591.1\|388512_389319_+\|shikimate-dehydrogenase	gnl\|CDD\|161904	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. [Amino acid biosynthesis, Aromatic amino acid family].	2.05126e-133
NZ_LS483486.1\|WP_005650823.1\|376213_376534_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|226080	COG3550, HipA, Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only].	5.59125e-25
NZ_LS483486.1\|WP_005661200.1\|375917_376226_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000139969
NZ_LS483486.1\|WP_013526377.1\|373372_373807_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	1.44217e-96
NZ_LS483486.1\|WP_005687916.1\|372591_373068_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.42496e-105

>NZ_LS483486.1|WP_105905588.1|379296_381042_-|ABC-transporter-ATP-binding-protein/permease
MMIDKRLINTVADSKKWIGVTVLWNWVALVGGIISAVVFSYILQAAYFHELSLLSAVILGILLIAALALRAFAGKKSVQASYFASTKVKHELRSLIYRKLASMPLNQVNQQSTSSIIQVASEGVEQLEIYFGRYLPQLFYSLLAPLTLFAFLIFFSFKTAVILLICVPLIPMSIIAVNKIAKKLLAKYWSIYVGLGSSFLDNLQGLITLKIYQDDAYKAKEMDKEAEHFRKITMKVLTMQLNSVSLMDLLAYGGAAIGILTALLQFQDAQLSVLGVILFILLSSEFFIPLRLLGSFFHVAMNGKAASDKIFTLLDTPVETQQSAVNFEAKNNLQVEIKDLHFSYSEEKPAITGLDLSILPNQLSVFVGKSGCGKSTLVSLLMGFNKAQQGEILFNGQNALNIDRTSFYQKVSLVSHSSYVFKGSLRENMTMAKIDATDEQIYACLEQVNLAHFVRENGGLDMQLLSRGANLSGGQIQRLALARALLHNAELYIFDEATSNIDVESEEIILQFIQQFKQQKTIVMISHRLANAVNADCINVLDQGKLIEQGTHKELMEKQGAYAEMFQQQKDLEQIREVENA
>NZ_LS483486.1|WP_105905587.1|377645_379304_-|thiol-reductant-ABC-exporter-subunit-CydC
MRKNGFVVMGHLLKLVTPLAHIMAFTITMGTLGFLAAIFIMVLGAMGLVNLLNFDTHLSFSGILTALIVLAVARGALRYLEQMSGHYIAFKLLALLRDKVFSSLRRLAFVKLQDKQAGQLVSLVTNDIELLEVFYAHTIAPIMIAFFTSAILLLVFAQLSSWFVLVALAAYLTVGVILPIITTKLAREDGRRYRELVGEMNDFFLDSVRGMKEIQLFGYAKQRLDEIQQRSQKIDTAFERIKDQEAKVRVYTEVAVSVFNIIMLFTGLILFSLDKIDFAAFLIGVILLMSSYGPVIALSNLSSNLLQTLASGERVLSLLAEEPELKDVESAVDLKEVSCIDVENVNFAYGEEQILSDVSLSVKKGEILGIHGRSGSGKSTLLKLLMRFYDPKSGSIKINGETLPNINTCSLRDNMAYITQQTYIFNETIEENIRLARRDATLEEIMEAAKKASIHDFILSLPQGYQTKMTELGGNLSDGEKQRIGIARAFLHNAPIILLDEPTSNLDSLNEAMILKSLLDAKAEKLIILVSHRQSTMAICDQVIGIENGRMS
>NZ_LS483486.1|WP_105905586.1|376530_377562_+|type-II-toxin-antitoxin-system-HipA-family-toxin
MNFCRILLKPLKKNEVHSGYSTKGLHYLTGNKNFNPELPFSRQEFITVKPQKQQGMSISGFQPKLQLIIKDEHFDSVNQQGNYILKPSPEEYPFLAENEHATMRIMKELGFDVPENGLVSFAGEQNHKEFAFVIKRFDRDEQQTEIHQEQLDGAMNIRDKYGKIGADNEQYVSYEQIAKFILQHTENHLAQQREIFRRIIYAYLLGNNDLHLRNFSFIYPKNSHPKLAPIYDFVSVSPYPEIFNSTLLALPLLAREEGNATLAKGFNTQYGEYIGDDFVEFGENIGLNKNVIIQKLIPEITQEKEKVEQIYSQSFMPQPHIDCVLKTYRKRLALLNVLNEPEL
>NZ_LS483486.1|WP_005650823.1|376213_376534_+|type-II-toxin-antitoxin-system-HipA-family-toxin
MRDLVRSGKVFLYGEFIGLLREDHHGFHFSYNPDYQGIPLSLSFPIEQSPFHSDTLFPYFASLVPEGWLKHKYALHQRIDEGDMFRFLLNNGENMLGAVQIQEEKQ
>NZ_LS483486.1|WP_005661200.1|375917_376226_+|helix-turn-helix-transcriptional-regulator
MNNLSAQLENQIDELKKLQKSVITYEQAQRQQLYAGKITDLKAFGKMLNDKRKSLGIELSMLELQTGVSISTLNRLFQDPSQVRFTTVFLVAQTLGVSLCAI
>NZ_LS483486.1|WP_005690169.1|374721_375723_+|class-II-fructose-bisphosphatase
MNRALAIEFSRVTEAAALAAYTWLGRGDKNAADDAAVKAMRYMLNLIHMDAEIVIGEGEIDEAPMLYVGEKVGSGLGELVSIAVDPIDGTRMTAMGQSNAISVLAAGGKNTFLKAPDMYMEKLVVGSNVKGIIDLNLPLEQNLRRIASKLGKSLSDLTVMVLAKPRHDAVIKQIHNLGAKVLAIPDGDVAGSVLCCLPDAEVDLLYGIGGAPEGVAAAAAIRALGGDMQARLIPRNEVKSDTEENKKIAANEIQRCAALGVKVNEVLKLEDLVRDDNLVFTATGITNGDLLKGISRKGNLASTETILIRGKSRTIRKIQSIHYLDDLYKILNI
>NZ_LS483486.1|WP_005694621.1|373803_374244_-|FMN-binding-protein-MioC
MHICILSGSTLGGAEYVAEHLNDVLETQGFSTALFHGPNLSDIENEKIWLVVTSTHGAGELPDNLKPLFDELANSQKDFSDVRFAVVGLGSSDYDTFCYAADKVEQTLQAKSAVKICETLKIDVLNVDDQESYAEEWLPSFIEGLK
>NZ_LS483486.1|WP_013526377.1|373372_373807_-|D-tyrosyl-tRNA(Tyr)-deacylase
MIALIQRVSQAKVDVNGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMNLNVQQAQGELLIVSQFTLAADTQKGLRPSFSKGASPALANELYEYFIQKCAEKLPVSTGQFAADMQVSLTNDGPVTFWLNV
>NZ_LS483486.1|WP_005687916.1|372591_373068_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MIRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFPDTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRQ
>NZ_LS483486.1|WP_005655267.1|371917_372595_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MARSIIAVLPAAGVGSRMQADKPKQYLTLLGKTLLEHTLDVMLSYPAVSKIILAVSKDDPYISTLSLDPKIQLVEGGTTRAESVLNGLNAIAEKNAWVLVHDAARPCLQHADIDKLLAIEDKQGAILAIPVTDTIKRADNQQCIVKTEDRSQLWQAMTPQFFPVDILRDALSTGIQQGANITDEASAIELAGFRPHLVAGRSDNLKVTRPEDLALAEFYLTRNKL
>NZ_LS483486.1|WP_111722589.1|381443_384587_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MLGLTASVAYADEPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQNSNASEQLEQINVSGSTENTDTKAPPKIAETVKTAKTLEREQANSIKDIVKYETGVTVVEAGRFGQSGFAIRGVDENRVAINIDGLRQAETLSSQGFKELFEGYGNFNNTRNGAEIETLKEVNITKGANSIKSGSGSLGGSVIYKTKDARDYLLNKDYYVSYKKGYATENNQSFNTLTLAGRYKKFDVLVVTTSRNGHELENYGYKNYNDKIQGKKREKADPYKIEQDSTLLKLSFNPTENHRFTLAADLYEHRSRGQDLSYTLKYQKTNSDLPEVDSRHTNDKTKRRNISFSYENFSQTPFWDTLKITFSKQKIKTRARTDEYCDAGVRYCEGTANPAGLKLTNGEITRRDGSPLKFTEINNTANTTSSKDKTYNFKEFIDIDNQVIQDKLALKRPSETWYDCSIFDCKNPEKLKIFEADRNFGTTGKWKQNIELKKIVSNGREFARVADKYNRKISSILPSSPGYLERLWQERDLDTNTQQLNLDLTKDFKTWRVEHNLQYGSSYNTTMKRMVNRAGNDATDVQWWATPTLGEDIFDKPYTCATTSEWNANLCPRVDPEFSYLLPIKTTGKSVYLFDNVVITDYLSFDLGYRYDNIHYQPKYKHGVTPKLPDDIVKGLFIPLPENPNDDKVKENVQQNIDYIAKQNKKYKAHSYSFASTIDPTSFLRLQLKYSKGFRAPTSDEMYFTFKHPDFTILPNTNLKPEIAKTKEIAFTLHNDDWGFISTSLFKTNYKNFIDLIFKEKRNFAVGDRGGSTLPFSLYQNINRDSAVVKGIEINSKVFLGKMAKFMDGFNLSYKYTYQKGRMDGNIPMNAIQPKTMVYGLGYDHPNHKFGFNFYTTHVASKNPEDTYNMFYKEENKKDSTIKWRSKSYTILDLIGYVQPIKNLTIRAGVYNLTNRKYITWDSARSIRSFGTSNVIDQSTGLGINRFYAPGRNYKMSVQFEF
>NZ_LS483486.1|WP_005654546.1|384847_385030_+|shikimate-5-dehydrogenase
MYEILFYRDQNDIEPVKEYLLSLAQNESKDSRIKLNKIRDYVIQTAQQRLSELKERLKNE
>NZ_LS483486.1|WP_005650837.1|385022_385319_+|helix-turn-helix-transcriptional-regulator
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKLLAPLGKTLSIVPLRVKNA
>NZ_LS483486.1|WP_105905590.1|385479_387396_+|ABC-transporter-ATP-binding-protein
MIIFSNLSLKRGQTELLENASATINPKQKVGLVGKNGCGKSSLFALLKKELMPEGGEVNYPANWRVSWVNQETPALDISAIDYVIQGDREYCRLQQELERANERNDGNAIARIHGQLEMLDAWTIQSRAASLLHGLGFSQEETIQPVKAFSGGWRMRLNLAQALLCPSDLLLLDEPTNHLDLDAVIWLERWLVQYQGTLVLISHDRDFLDPIVTKILHIENQKLNEYTGDYSSFEVQRATKLAQQTAMYRQQQQKISHLQKYIDRFKAKATKAKQAQSRMKALERMELIAPAYVDNPFTFEFRPPQSLPNPLVMIEQASAGYGSGESAVEILSKIKLNLVPGSRIGLLGKNGAGKSTLIKLLAGELTALSGTVQLAKGVQLGYFAQHQLDTLRADESALWHMQKLAPEQTEQQVRDYLGSFAFHGDKVNQAVKSFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALVDYEGSLVVVSHDRHLLRNTVEEFYLVHDKKVEEFKGDLEDYQKWLSEQNSTSENKVSEKVGDNENSVQNRKEQKRREAELRQQTAPLRKKITQLEEKMNKFSSELANIENQLADAELYNAENKEKLTALLAQQVDVKKALDDVETEWMTAQEELEEMLQA
>NZ_LS483486.1|WP_038439524.1|387405_387942_+|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDEICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKITCPECKTGHLIPRRGRQGKIFYGCDNFPKCKFSLPAKPYTLPCPTCHFPLSLLKGEDGEKQIFQCANKTCRHIFEQ
>NZ_LS483486.1|WP_038439523.1|387957_388509_+|Sua5/YciO/YrdC/YwlC-family-protein
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQLSRLQGKYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKALCEITGFALTSTSANLTGEPPCRIADEVRSQFGSDFPVLDEIVGGALNPSEIRDLRTNQLFRQG
>NZ_LS483486.1|WP_105905591.1|388512_389319_+|shikimate-dehydrogenase
MDLYAVWGNPIVQSKSPLIQSQLAAQTHQTIEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKLAEACNTLKKLDDGKLYADNTDGIGLVTDLQRLNWLHPNQRILILGAGGATKGVLLPLLQAQQNIVLANRTFSKAKELAERFQPYGNIQAASMDSIPLQTYDLVINATSAGLRGGTASVDAEILRLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVAVYEQLK
>NZ_LS483486.1|WP_011272149.1|389330_390083_+|DUF3800-domain-containing-protein
MENKYSDFMVYVDESGDHSLQSIDKNYPVFVLAFCIFYKDHYRNNIVPQIQKIKFDYFGHDMVILHEHEIRKEKGDFNIFTSREQREGFMERISSIIENTNFILAACVIDKRKTPQNETTHPYHFSLKHCLETLYEFVCEKHQEDKITFVAVESRGRNEDRELELEFLRICDGQNKFKKSLPFQVKIVPKQINSVGLQVADLVARPIGRHILDSNQPNRAFEILKKKFYCEGGRKILGENFDQKGLKHFP
>NZ_LS483486.1|WP_011272148.1|390197_390761_+|DNA-3-methyladenine-glycosylase-I
MQQITRCPWVGEQPIYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYRAAFHQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAKAYLAMEKCGENFSNFIWSFVNHKPIVNDVPDLRSVPTKTEVSKALSQALKKRGFVFVGETTCYAFMQSMGLVDDHLNDCPCKTR
>NZ_LS483486.1|WP_011272147.1|390757_391522_-|glycosyltransferase-family-2-protein
MPTISVAMIVKNEAQDLANCLDTVKDWVDEIIILDSGSTDNTKEIALSYGAKFYENSDWQGFGKQRQLAQQYVTSDYVLWLDADERVTPKLQQAILSAVKNDRENTVYEIPRVSEVFGREIRHSGWYPDYVVRLYRTNYAQYNDSLVHEKVEFPAGTKVEKLTGDLEHFTYKSIHHYLVKSAGYAKAWADQRQAKGKKATLWQGISHALGCFVKMYLLKAGFLDGKQGFLLAVLSAHSTFVKYADLWERDQHKH

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Crispr_ID: NZ_LS483486_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483486_2

1170184-1170332

Orphan

Consensus_repeat	Method
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LS483486_2

>merge|NZ_LS483486|2|1170184-1170332|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAATTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

>NZ_LS483486|2|2|1170184-1170332|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAA
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483486.1\|WP_105905317.1\|1161193_1162066_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_LS483486.1\|WP_105905316.1\|1166320_1168912_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	unknown	unknown	gnl\|CDD\|234980
NZ_LS483486.1\|WP_005670302.1\|1164940_1165285_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NZ_LS483486.1\|WP_005649958.1\|1165420_1166227_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_LS483486.1\|WP_105897864.1\|1162230_1164579_-\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
NZ_LS483486.1\|WP_005688044.1\|1168986_1170054_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	unknown	unknown	gnl\|CDD\|131433
NZ_LS483486.1\|WP_005658253.1\|1176506_1177862_+\|two-component-system-sensor-histidine-kinase-QseC	unknown	unknown	gnl\|CDD\|182388
NZ_LS483486.1\|WP_005654345.1\|1175414_1175780_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|129260
NZ_LS483486.1\|WP_005664896.1\|1172616_1174344_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	unknown	unknown	gnl\|CDD\|183017
NZ_LS483486.1\|WP_005649974.1\|1175844_1176510_+\|two-component-system-response-regulator-QseB	unknown	unknown	gnl\|CDD\|182387
NZ_LS483486.1\|WP_005688053.1\|1159703_1161038_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_LS483486.1\|WP_005649971.1\|1175087_1175300_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224399
NZ_LS483486.1\|WP_005654343.1\|1174403_1174904_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|181859
NZ_LS483486.1\|WP_005688057.1\|1157658_1158396_+\|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl\|CDD\|212111
NZ_LS483486.1\|WP_011961859.1\|1172271_1172529_+\|phosphocarrier-protein-Hpr	unknown	unknown	gnl\|CDD\|182777
NZ_LS483486.1\|WP_009500975.1\|1170453_1171002_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NZ_LS483486.1\|WP_005688055.1\|1158439_1159633_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|224826
NZ_LS483486.1\|WP_105905315.1\|1178138_1180166_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|224211
NZ_LS483486.1\|WP_011272764.1\|1164585_1164939_-\|YacL-family-protein	unknown	unknown	gnl\|CDD\|225654
NZ_LS483486.1\|WP_011961858.1\|1171072_1172113_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039

Protein	Function_ID	Function_description	E-value
NZ_LS483486.1\|WP_105905317.1\|1161193_1162066_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_LS483486.1\|WP_105905316.1\|1166320_1168912_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	gnl\|CDD\|234980	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
NZ_LS483486.1\|WP_005670302.1\|1164940_1165285_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	3.07846e-82
NZ_LS483486.1\|WP_005649958.1\|1165420_1166227_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.6579e-160
NZ_LS483486.1\|WP_105897864.1\|1162230_1164579_-\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_LS483486.1\|WP_005688044.1\|1168986_1170054_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_LS483486.1\|WP_005658253.1\|1176506_1177862_+\|two-component-system-sensor-histidine-kinase-QseC	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	3.24236e-178
NZ_LS483486.1\|WP_005654345.1\|1175414_1175780_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|129260	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. [Hypothetical proteins, Conserved].	8.01756e-57
NZ_LS483486.1\|WP_005664896.1\|1172616_1174344_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
NZ_LS483486.1\|WP_005649974.1\|1175844_1176510_+\|two-component-system-response-regulator-QseB	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	3.28549e-101
NZ_LS483486.1\|WP_005688053.1\|1159703_1161038_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_LS483486.1\|WP_005649971.1\|1175087_1175300_+\|hypothetical-protein	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	9.985e-06
NZ_LS483486.1\|WP_005654343.1\|1174403_1174904_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.54255e-101
NZ_LS483486.1\|WP_005688057.1\|1157658_1158396_+\|5-oxoprolinase-subunit-PxpA	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	5.85636e-152
NZ_LS483486.1\|WP_011961859.1\|1172271_1172529_+\|phosphocarrier-protein-Hpr	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	1.7508e-37
NZ_LS483486.1\|WP_009500975.1\|1170453_1171002_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	3.63664e-134
NZ_LS483486.1\|WP_005688055.1\|1158439_1159633_+\|divalent-metal-cation-transporter	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	2.41376e-86
NZ_LS483486.1\|WP_105905315.1\|1178138_1180166_+\|BCCT-family-transporter	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	0
NZ_LS483486.1\|WP_011272764.1\|1164585_1164939_-\|YacL-family-protein	gnl\|CDD\|225654	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown].	2.75988e-60
NZ_LS483486.1\|WP_011961858.1\|1171072_1172113_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0

>NZ_LS483486.1|WP_005688044.1|1168986_1170054_+|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase
MLSIFVTFLGAFLTLIVMRPLANWIGLVDKPNYRKRHQGTIPLIGGVSLFVGNLCYYLMEWDQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAILAILMIDLGNIYLDHLGQILGPFQLTLGSIGLIITVFATIAIINAFNMIDGIDGLLGGLSCVSFAAIGILMYRDGQMDMAHWSFALIVSILPYLMLNLGIPFGPKYKVFMGDAGSTLIGFTIIWILLLSTQGKGHPMNPVTALWIIAIPLIDMVAIIYRRVRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITFVSAVCATIGILGEVYYVNEWAMFVGFFILFFLYVYSITHAWRITRWVRRMKRRAKRLKKA
>NZ_LS483486.1|WP_105905316.1|1166320_1168912_+|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD
MLFSPTLSSPLTPSAVKIERENLKQFELENFSRYSIFELIENRCDFYDALLIQLWQEIELSEQLGIALIAVGGYGRREMFPLSDLDFLILVEQTPSPEIEEKITQFIQFLWDCGFEVGNSVRTLEQCESEGKQDITIATNLLEARFLAGNRPHFDALNELVKRADFWSKEDFFNAKVQEQIERYQRYHNTAYNLEPDIKYSPGGLRDLHLLYWVALRHSGALTLEAILQSGFIYPQEYQQLQESRAFLFKVRFALHLILKRYDNRLLFDRQIKVSELLGFRGEGNPAVEKMMKCFFQALHRISLISNLLIQHYRENVLPSNQDTVIDQLDDDFQLINQCLCLRNSFVFQEKPARILDLFFYLTQYEHANIHSDTLRQLQISLDQLSQKLCEIPAAREKFLRLFNQPNAIKRAFMPMHQYGVLTAYLPQWQAIEGLMQFDLFHIYTVDEHTLRVMLKLESFLSQESAQEHPIAHRIFSQLSDRTLLYIAALFHDIAKGRGGDHAELGAVDIADFAQLHGLDRREIDTLAWLVKSHLLMSITAQRRDIHDPEVVMNFAEAVQNQVRLDYLTCLTVADICATNGNLWNSWKRSLFASLYEFTGRQFSQGMKELLDYSEKSAENRKLAQQILMRDYSDITQISIEQLWARCPEDYFVRNTPKQIAWHTSLLVDFVEALLVKISNRFSLGGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLPALSIVPNRQLQHFTVQTDVRFLQENKKEHTQMELVALDKAGLLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILRNVLYRNIG
>NZ_LS483486.1|WP_005649958.1|1165420_1166227_+|type-I-methionyl-aminopeptidase
MAIPIRTEKEIVKLREACKLASDVLVMIEPYVKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSDDKVLKNGDIVNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGIRTVKPDIRLNEIGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQLVVTETGCEVMTIRDEEIAEGRISRIMVNV
>NZ_LS483486.1|WP_005670302.1|1164940_1165285_-|iron-sulfur-cluster-insertion-protein-ErpA
MIDDMAVPLTFTDAAANKVKSLISEEENTNLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI
>NZ_LS483486.1|WP_011272764.1|1164585_1164939_-|YacL-family-protein
MDFQFTHYQGNVSVKCSMEHIALANWFNTEVRSNSDKILTALSTAKSLIENQEKVLVGAEYTLFLNADEVMVRANNLAIESDEILEQDFHYYDEESLAFCGTQDFIHFLQSYVDFIA
>NZ_LS483486.1|WP_105897864.1|1162230_1164579_-|penicillin-binding-protein-1B
MTSQHSAKKSSKNTPKNNRTFKGFLLKFSFTALVLTIFYGGYLDWQIRSKMDGQIWHLPAEVYSLLESVKIADNLTFDEVIQILLDNEYRQTTMVAAPGDFKLEDDSIVVLRRAFPFPDKAEPQRILRLRFSNNKLSRIEDLVTVKTVDEFRLAPKLIAMLQSDNEDRLAIPLQNYPRLLIDTLILTEDRRFYEHNGINPVGILRALIANIRAGQTVQGGSTLTQQLVKNLFLSRERTITRKANEALMSLVLDWRYDKNRILETYLNEIYLGQNGDTQIHGFELASQFYFGRSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNIVLKLMLEHKMIGDELYQLLSQRPLGVQKKGQISRKYPAFIQTLQADLRRELGEHKMSSLLGARIFSTMDLKQQTQAENAVVNTVSQLQLKTKNPHLESAMIITDYRTGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTLINNQPITINVKGSPPWQPRNYDKKYSGSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVEIPKVPAMLLGSYTISPYDVTKLYQTIANQGERISLTTVDSITDRQGNLIFQHDKSVKQVVPQEAAFQTLFAMQQTVERGTARSLQKDYADLHLAGKTGTTNEARDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLNRTNIEKLAITPPATVKWVGINQYGGWDCESYRTIPVWLNNGQNFCGEIASPSFTPTEAETTTPPQESLWDVLDNPNPPAQ
>NZ_LS483486.1|WP_105905317.1|1161193_1162066_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTQQSLTLSLKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGDSVYDVLPKEEADLIKDRAVVCKRLTPIKIESIVRGYLTGSGLKDYKQTGTICGLKLPENLVEASKLPEAIFTPSSKEEVGNHDINISYTECEKLIGSDLAAQVKEKAIALYTTAAEYALTKGIIICDTKFEFGLDENGTLTLMDEVLTPDSSRFWSVETYQAGTNPPSFDKQFVRDWLENSGWNKQAPAPKVPENIIQKTVDKYQEALDLLTK
>NZ_LS483486.1|WP_005688053.1|1159703_1161038_-|argininosuccinate-synthase
MSNTILQNLPKGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYNAIPKKAMAYGAENARLIDCRSQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDVQFIEELGGRLEMSQFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEQLSTGMKIVKPIMGVAFWDEKVEIKPETVTVTFEDGVPVALNGKHFDNAVDLILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGIRLGRLLYQGRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEKVEDAPFDPVDRIGQLTMRNLDVSDTRGKLGIYAQTGLLSAIKDSVLPQLGKK
>NZ_LS483486.1|WP_005688055.1|1158439_1159633_+|divalent-metal-cation-transporter
MASITHRRNAVLGAAFLMATSAIGPGFLTQTATFTNTLLASFGFVILLSILLDIGAQLNIWRIVIVSGKRAQDISNAVFPKAGYFLAALIVMGGLAFNIGNVGGAGLGLNSIFGIAPEMGAVISGIIAILIFLRKEAGLLMDRFAQLMGFIMVALTFYVMFKTEPPVAEAAYHSFIPEKIDPIAIVTLVGGTVGGYITFAGAHRLLDAGIQGEKAMAEVSRSSVSAILIASTMRVVLFLAVLGVVSKGVSLNPKNPAETPFEYVAGNFGQVLFGVVIWAASVTSVIGAAYTSVSFLTTLCPTIERNRNRWIIAFIVISTVVLVTVGKPAAVLVFVGTLNGLILPIALALILLAAYRSDIVGTYKHPVFLAFSGWFVVIIMAILSGKTIISYISSFFS
>NZ_LS483486.1|WP_005688057.1|1157658_1158396_+|5-oxoprolinase-subunit-PxpA
MKKIDLNADIAEGFPFDESLLQLLSSANIACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELIAHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARVIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEVFADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNHIKITA
>NZ_LS483486.1|WP_009500975.1|1170453_1171002_-|oligoribonuclease
MPFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFMKLD
>NZ_LS483486.1|WP_011961858.1|1171072_1172113_+|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MAKRKLTQNQTRRIQSNNAKTLHRHKKKDIEWSDEMLGESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKVVWRKGNEQLQGVSGVIEAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLAQEQRQEIEDQLKIYQDIGYEILMISAKSGENMEKLTALLAQGTAIFVGQSGVGKSSLINHILPSVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVLGTCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESLSETKSQRHFSLV
>NZ_LS483486.1|WP_011961859.1|1172271_1172529_+|phosphocarrier-protein-Hpr
MYSKDVEIIAPNGLHTRPAAQFVKEAKAFSSEITVTSGGKSASAKSLFKLQTLVLTQGTILTISADGEDEQQAVDHLVALIPTLE
>NZ_LS483486.1|WP_005664896.1|1172616_1174344_+|phosphoenolpyruvate-protein-phosphotransferase-PtsI
MISGILASPGIAFGKALVLKEEKIVLDTQKITDDQIDAEVARFYEGRAAAVEQLNSIRERALISLGEEKAAIFEGHLMILEDEELEEEILDYLRSNKVNAGVAASKILDQQVTMLSEIDDEYLKERAGDIRDIANRLVKNILGMYIVDLGDIQEESILVAYDLTPSETAQLNLEKVLGVVTDIGGRTSHTSIMARSLELPAIVGTNKVTKLVNTGDYLILDAINNQVYINPTASQIDELKALEAKISEEKAELAKLKDLPAITLDGHKVDVVANIGTIRDCDGAERNGAEGIGLYRTEFLFMDREQLPTEEEQFIAYKQVVEAMNGRLTVLRTMDIGGDKELSYLDLPKEMNPFLGWRAIRIALDRREILNAQLRAVLRASAFGKLAVMFPMIISVEEIRELKAVIETLKAELREEGRLFDNNIQVGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNEFISHLYNPMHPSVLGLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNVNFQDAKVLADTALQKPTAAEIDQLIEEFLLENSLN
>NZ_LS483486.1|WP_005654343.1|1174403_1174904_+|PTS-glucose-transporter-subunit-IIA
MGLFDKLFGSKENKSVEVEIYAPISGEIVNIEDVPDVVFSEKIVGDGVAVRPIGNKIVAPVDGVIGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRIAQEGQSVKRGDTVIEFDLALLESKAKSVLTPIVISNMDEISCIVKKSGEVVAGESVVLALKK
>NZ_LS483486.1|WP_005649971.1|1175087_1175300_+|hypothetical-protein
MQNIQYECGETHHLKAQSASILLVMKGQLNLRSETTALSLKQGKVAFITAGAAYEVEGLIEGYAVVAKLP
>NZ_LS483486.1|WP_005654345.1|1175414_1175780_+|YgiW/YdeI-family-stress-tolerance-OB-fold-protein
MKKFALATIFALATTSAFAGFNGNNSQGGFQQAAPAAISVKQALSAADNSMITLVGNITQQIDDDEFWFTDGTGQIKIEIKKRVWNGLNVDSKDKVKIYGKLDNEVFEKAELDVLRIEKVE
>NZ_LS483486.1|WP_005649974.1|1175844_1176510_+|two-component-system-response-regulator-QseB
MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK
>NZ_LS483486.1|WP_005658253.1|1176506_1177862_+|two-component-system-sensor-histidine-kinase-QseC
MKNRSLTLRLISVLCLTALFVWLGSTLVAWWQVRHDVNKVFDAQQVLFAERLANSDLSTILLESSTTLNKNSQSVLKKSYDDDALAFAIFSKTGKLLFSDGRNGKDFIFNYKTGFYNANIYDDDDKWRIFWRMAANGELVIAVGQELDYREDLIEEMILGQMWIWFASLPILIIVLGWLIHKELRPIKRLSQEVQTRKSGDVSLLNTEGLPVEILPLVKNLNQFFDRTSAMLQRERRFTSDAAHELRSPLAALRIQTEVAQLAGDDVALREQALLHLTQGIDRASQLIEQLLTLSRLDNLQALETLQLLDWEAIVQSLISERYFVAEKRKITLVFEKESEPKQKQGQSILVSLMLRNLLDNAIKYCPEDTIVSVKISSSQIIIEDNGGGVEPEDLKKLGQRFYRPAGQNEKGSGLGLSIVMRIAELHGFKVRLENVVKEGRRIGLKAIISL
>NZ_LS483486.1|WP_105905315.1|1178138_1180166_+|BCCT-family-transporter
MSLSQFMTKRTSFNPLVIGVTLFFILLLMAMIFIAPEQTQALLNQAKSGIFANFSWFYVLTFSVFLGFLLILSVSSLGNIKLGQDEEEPEFSFLSWLAMLFAAGMGVGLMFFGVAEPLTHYLSDITVGSAEHKQQEALLHTLFHWGIHAWAVYGTIALALAYFGFRYKLPLALRSCFYPLLKDRINGKIGDAIDVMALLATLFGIITTLGFGSSQLGAGLEQIGWISQNSFALQVGVIVVVMCLAVFSAISGIGKGVKILSEINLTLAFCLLLFVLISGPTLYLLSAFSDNIGNYFSNLVQLSFKTYAYEQEHTSWFSGWTVLYWAWWCSWAPFVGLFIARISKGRTIREFIFGVLVIPSLFGILWFTVFGNTAVWLNDGIAAGGLGEFISSPEILLFKFLNYLPLPTITGFVSLLVISLFFITSADSGIYVLNNIASRDKSLASPAWQAIMWGTLMSVVAIVLMQSGGLANLQTMTLIVALPFALLMLVMCFSLWKGLIADKKYFSTKVNPTSIFWSGDKWKSHLEQMMNQTQEKDILRFLKNTALPAMRELRQELTGKYNLSVEINTLFKQEEPALELVIHKESMRDFMYGIKSVGREVSEQLINDENLPHIQHSVTYEPYTYFFDGRVGYDVQYMDQDELIADMLKQYERYLSLLDDVGQELMAHEQTELAE

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Crispr_ID: NZ_LS483486_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483486_3

1199048-1199135

Orphan

Consensus_repeat	Method
ACCTTCCCCCGCAAGCAAGGGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483486_3

>merge|NZ_LS483486|3|1199048-1199135|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGGCAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGATACCTTCCCCCGCAAGCAGGGGAAGG

>NZ_LS483486|3|3|1199048-1199135|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGG	CAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGAT
ACCTTCCCCCGCAAGCAGGGGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483486.1\|WP_005688002.1\|1200482_1201559_-\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NZ_LS483486.1\|WP_105905356.1\|1191501_1192386_+\|lipooligosaccharide-biosynthesis-N-acetyl-glucosamine-transferase-LsgE	unknown	unknown	gnl\|CDD\|366154
NZ_LS483486.1\|WP_005658217.1\|1193300_1194068_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|182640
NZ_LS483486.1\|WP_005654147.1\|1204188_1204767_-\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NZ_LS483486.1\|WP_105905353.1\|1209278_1211231_-\|adhesin	unknown	unknown	gnl\|CDD\|375681
NZ_LS483486.1\|WP_005658223.1\|1190716_1191490_+\|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgD	unknown	unknown	gnl\|CDD\|225843
NZ_LS483486.1\|WP_005689720.1\|1205051_1206113_-\|protease-SohB	unknown	unknown	gnl\|CDD\|236978
NZ_LS483486.1\|WP_005658219.1\|1192387_1193191_+\|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgF	unknown	unknown	gnl\|CDD\|133038
NZ_LS483486.1\|WP_005689723.1\|1199859_1200483_-\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NZ_LS483486.1\|WP_105876642.1\|1207044_1209201_+\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
NZ_LS483486.1\|WP_105905354.1\|1196898_1198272_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_LS483486.1\|WP_005654371.1\|1194205_1194970_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_LS483486.1\|WP_172450359.1\|1211259_1211460_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372724
NZ_LS483486.1\|WP_005689729.1\|1195819_1196875_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_LS483486.1\|WP_005689725.1\|1199150_1199858_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NZ_LS483486.1\|WP_005689727.1\|1198330_1198966_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NZ_LS483486.1\|WP_005650033.1\|1203519_1204101_-\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347
NZ_LS483486.1\|WP_005688001.1\|1201563_1203519_-\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|235334
NZ_LS483486.1\|WP_005658215.1\|1195104_1195833_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_LS483486.1\|WP_005658225.1\|1189643_1190705_+\|lipooligosaccharide-biosynthesis-family-4-glycosyltransferase-LsgC	unknown	unknown	gnl\|CDD\|340847

Protein	Function_ID	Function_description	E-value
NZ_LS483486.1\|WP_005688002.1\|1200482_1201559_-\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
NZ_LS483486.1\|WP_105905356.1\|1191501_1192386_+\|lipooligosaccharide-biosynthesis-N-acetyl-glucosamine-transferase-LsgE	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	6.29483e-31
NZ_LS483486.1\|WP_005658217.1\|1193300_1194068_-\|TOBE-domain-containing-protein	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	2.3464e-84
NZ_LS483486.1\|WP_005654147.1\|1204188_1204767_-\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	5.78855e-111
NZ_LS483486.1\|WP_105905353.1\|1209278_1211231_-\|adhesin	gnl\|CDD\|375681	pfam18254, HMw1_D2, HMW1 domain 2. This domain is found in Actinobacillus pleuropneumoniae HMW1C (ApHMW1C). HMW1 adhesin is an N-linked glycoprotein that mediates adherence to respiratory epithelium through N-glycosylation of protein acceptor sites and O-glycosylation of sugar acceptor sites. This domain forms an all alpha domain (AAD) when combined with the N-terminal domain. The AAD interacts extensively with the C-terminal GT-B fold in order to create a unique groove with the potential to accommodate the acceptor protein.	2.32888e-48
NZ_LS483486.1\|WP_005658223.1\|1190716_1191490_+\|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgD	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	6.22864e-55
NZ_LS483486.1\|WP_005689720.1\|1205051_1206113_-\|protease-SohB	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
NZ_LS483486.1\|WP_005658219.1\|1192387_1193191_+\|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgF	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	6.66963e-120
NZ_LS483486.1\|WP_005689723.1\|1199859_1200483_-\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	1.08851e-127
NZ_LS483486.1\|WP_105876642.1\|1207044_1209201_+\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
NZ_LS483486.1\|WP_105905354.1\|1196898_1198272_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.81306e-163
NZ_LS483486.1\|WP_005654371.1\|1194205_1194970_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	3.40456e-98
NZ_LS483486.1\|WP_172450359.1\|1211259_1211460_+\|hypothetical-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	0.000387069
NZ_LS483486.1\|WP_005689729.1\|1195819_1196875_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_LS483486.1\|WP_005689725.1\|1199150_1199858_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	4.5237e-131
NZ_LS483486.1\|WP_005689727.1\|1198330_1198966_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	8.06206e-140
NZ_LS483486.1\|WP_005650033.1\|1203519_1204101_-\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.12731e-113
NZ_LS483486.1\|WP_005688001.1\|1201563_1203519_-\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
NZ_LS483486.1\|WP_005658215.1\|1195104_1195833_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	4.4308e-140
NZ_LS483486.1\|WP_005658225.1\|1189643_1190705_+\|lipooligosaccharide-biosynthesis-family-4-glycosyltransferase-LsgC	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	6.66878e-136

>NZ_LS483486.1|WP_005689727.1|1198330_1198966_-|endonuclease-III
MNKTKRIEILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAAGKDVVKVEEKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVEF
>NZ_LS483486.1|WP_105905354.1|1196898_1198272_-|sodium-dependent-transporter
MTTNNKQRQTWSSRLTYVMTVAGATVGFGATWRFPYLVGENDGGAYVLLFCIAMIVIGIPMILVENVIGRRLRVNSIDAFGDKILDKGKGISKYWKILGYMGLLGAFGIMAYYMVLGGWVISYIISLISGTLDISTPITKDIAKNFYDLHIGNSPYEIIFYTLLFVIVNYIILAKGIIGGIERSVKYLMPLLFIFLIGMVIRNVTLPGAMEGITFYLKPDFSKITPQLFIFVLGQVFFALSLGFGVLITLSSYLNKEENLIHTAVITGFTNTIIAVLAGFMIFPSLFTFGIEPNAGPTLVFQSLPIVFSHLWAGKFFAIIFFGLLLIAALTTSITIYEVIITALQEKLRMRRGKAIVLTLSGIFLLGNIPAILGDNLWKNVTIFGKSIFDFYDYASGNILFMLTALGCAIFVGFVLKDEAKKELSSTKYSTFIKIWFNYVKFVVPLIILVIFISNLF
>NZ_LS483486.1|WP_005689729.1|1195819_1196875_+|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLQINVKKQLGKLALQANIQVPDQGVTAIFGLSGSGKTSLINLVSGLIQPDEGFIRLNDRTLVDMESQESLPTHLRKIGYVFQDARLFPHYTVKGNLRYGMKHVSQDDFNYIVDLLGITHLLKRYPLTLSGGEKQRVAIGRALLTDPDILLMDEPLSALDVPRKRELMQYLERLSKEINIPILYVTHSLDELLRLADRVVLMENGIVQAYDSVEKIWNSPIFAPWKGENEQSSVLALPVHLHNPPYKMTALSLGEQALWIHQVPANVGERVLVCIYSSDVSIILQKPEQTSIRNILRGKITQIEIQDSRVDLAVLVEGNKIWASISKWAQNELRFAVGQDVYVQIKAVSVM
>NZ_LS483486.1|WP_005658215.1|1195104_1195833_+|molybdate-ABC-transporter-permease-subunit
MLTQFFSFFNLTPMEISAINLSLSVAVSSMLWSLPLAIFVAWLLARKNFYGKSLITGVIHLPLVLPPVVIGYLLLVAMGRNGFIGKYLYQWFGLSFGFSWKGAVLSSAVVAFPLVVRAIRLSLENIDIKLEQAAQTLGASAWRVFFTITLPLSLPGVLAGLVLGFARSLGEFGATITFVSNIAGETQTIPLAMYSFIQTPAAEEQTARLCLFAIILSLISLLLSEWLSKRMQKKLGQGNVAN
>NZ_LS483486.1|WP_005654371.1|1194205_1194970_+|molybdate-ABC-transporter-substrate-binding-protein
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQVEEGAPADIFVSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPAKSAVNSVDIAKGEWINALKDSYLSVGDPAHVPAGQYAAEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKVSQQVKTVAVFPADSHKPVVYPVSIVKGHDNADSRDFLKYLESDAAKKVLVGYGFSAK
>NZ_LS483486.1|WP_005658217.1|1193300_1194068_-|TOBE-domain-containing-protein
MKNTEILLTIKLQQALFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTVLTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGRVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEQPLVNQPNQFSVNIKSLNEEEAILQFAESNIEFCATVHQPNQWQIGQQVWIHIDQEQIILATLG
>NZ_LS483486.1|WP_005658219.1|1192387_1193191_+|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgF
MKFSVLMSLYIKENPQFLRECFESLVAQTRQADEIVLVFDGAVTPELESVVTEFETKLPLKLVKLPQNRGLGKALNEGLLHCTYDWVFRMDTDDICVPDRFEKQVAFIEQHPESIIFGGQIAEFGKNVNDIVAYRNVPTSAQEIIKFTQKRCPFNHMTVAYQKSAVINCGGYEDLQEDYYLWIKLVAQGLYMANLPDILVYARVGNGMVSRRRGVNQAKAEWRLFKLKYRLGIQGLLSGLFTFALRFGSRLLPTSLLKKLYQTFLRK
>NZ_LS483486.1|WP_105905356.1|1191501_1192386_+|lipooligosaccharide-biosynthesis-N-acetyl-glucosamine-transferase-LsgE
MLSIIVPSYNRKAEVPALLERLTQQTSSNFEVIIVDDYSKERVVVEQRYSFPVTVIRNETNQGAAESRNIGARASKGDWLLFLDDDDRFMPEKSEKILQVIEQNPDINFIYHPAKCEMVNEGFSYVTQPIEPQEISTERILLANKIGGMPMVAIKKEMFLKIGGLSTALRSLEDYDFLLKLLQEPSFTPYKINEPLTYCTFHTKRSSVSTDTTNTQKAIDYIREHYVKTVEQARNFDINASYILAYPHIMNLSRKAAKYYFDIFKKTKSIKQFIITLVILISPKLAINLKRLGK
>NZ_LS483486.1|WP_005658223.1|1190716_1191490_+|lipooligosaccharide-biosynthesis-galactosyltransferase-LsgD
MLKKYLISLDKDIQRRKLFFSQKNTEDFQIFSAINTMQKDWDELASIFNIEQFKAHYFRNVTKGEIGCTLSHLSVYQKIIEDNDIAEDSYALVCEDDALFHSDFQQNLTALLSEKLEAEIILLGQSKINSFNDTDLEINYPTTFSFLCKKTGNVNYAFPYKSYFAGTVGYLIKKSAARRFIQQISQNKPFWLADDFLLFEQDFNIRNKVVRPLMVIENPVLISNLESVRGSLSNNLLKKLMKYPLKKIFAIKKNLAN
>NZ_LS483486.1|WP_005658225.1|1189643_1190705_+|lipooligosaccharide-biosynthesis-family-4-glycosyltransferase-LsgC
MKKIGFFIMNIESAGGTERVSINVANALAKQGYDVSFISIGGNKPFFQVDEKINIYAMNKLPYSLKKDYFSITKKLRELVKELQLDTLIVVDGAIMLFSALALVNLNIKHILWEHYSFNFTGNRLVRTLGKYLAVTTCDKIVTLTEAEKTLWQEKFKTNNIITIANPNTLLPKNKLAKWENKTILSVGHLFSYKGFDYLLKVWQVLAKKYPDWNLKIVGSGEEEENLKNLAKALDIEDSVNFTPRTNDVSFYYESSSIYCLPSQTEGLPLVVIEAMAFGLPIVAFNCSPGVKQLVEHKENGFLCEKNNIEEMVKGLDLLINNPELYQQMSDKSRLMSEDYGIEKIIEEWKGIL
>NZ_LS483486.1|WP_005689725.1|1199150_1199858_-|electron-transport-complex-subunit-E
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLSLATMLVLTCTNTVISLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNVKK
>NZ_LS483486.1|WP_005689723.1|1199859_1200483_-|electron-transport-complex-subunit-RsxG
MGTVKITSRYGILLGFIALLCTIISAGIYFLTKDKIDAVIAAQQRELLLQVIPQDYFNNNLLESAVIPQDKNFVGIQKIYFAKKDGNISAYAYETTAPDGYSGDIRLLVGLDPKGEVLGVRVIEHHETPGLGDKIERRISNWILGFTNQSINEHNLSEWAVKKDGGKFDQFSGATITPRAVVNQTKRSALIMLNNQALLQQLSTQVK
>NZ_LS483486.1|WP_005688002.1|1200482_1201559_-|electron-transport-complex-subunit-RsxD
MFKMVSSPHTHSGKLTARIMLWVILAMMPAFFTQIYYFGFGVLLQSALAIGTAIIAEFIAIKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWVIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSLIFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHNQLSDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLILKRIIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
>NZ_LS483486.1|WP_005688001.1|1201563_1203519_-|electron-transport-complex-subunit-RsxC
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQSDGLDQWIERNPIDDFSTLSPEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQTQPTDAKKAVVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAKTQTTLENNQE
>NZ_LS483486.1|WP_005650033.1|1203519_1204101_-|electron-transport-complex-subunit-RsxB
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE
>NZ_LS483486.1|WP_005654147.1|1204188_1204767_-|electron-transport-complex-subunit-RsxA
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSAIALITAGLMSLAFMGFTGLVK
>NZ_LS483486.1|WP_005689720.1|1205051_1206113_-|protease-SohB
MLNDILTGYGIFILEILTILLLILAIVGLIISYRQHNKSKVGELEIKDLSEEFNEQVRLLRDFNLSEEEQKQRTKAEKKAEKQNAKKRKEKLKKGDTLEDEKKACVYVLDFCGDISASETTALREEISAILNVAKPEDEVLLRLESPGGIVHNYGFAASQLSRLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCLDIDKIATGEHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKKFGRQAEESAINIIHRYSTKQSRDFMY
>NZ_LS483486.1|WP_105876642.1|1207044_1209201_+|TIGR01666-family-membrane-protein
MNIRLNAKVISTIPVFIAVNIAAVGIWFFDISSQSMPLILGIIAGGLVDLDNRLTGRLKNVFFTLIAFSISSFIVQLHIGKPIQYIVLMTVLTFIFTMIGAVGQRYSTIAFGSLVVALYTTLTYIPEVNVWFINPVMILCGTLLYSVVTLIVYLFFPNRPVQESVAKAFCALGEYLDTKSCFFDPDEVAEIEKKHLNFAMKNANVVTAFNIVRTALFYRIRGQHRHPRTQRMLRYYFAAQDIHERTNSTHFDYQQITEKLKNTDLIFRIQRLLELQAQSCKEITASLRENKPYHFNKRVERALLGTLHSFELYKAQHLNDQDELIDIQTLLDNLQSINWQLRQLAQETTVTEQLAQIHTEQITGLRNISAVIFSHFTFESPLFRHAVRLSIVVFLCCAIVEFFQFNLGYWILLTTVFVCQPNYSATKVRLRQRIIGTILGVVVGSLLPYLNPTLELKLGLVVLTSTLFFFFRSNNYSFSTFFITLQVLLSFDVMGFDTAAALMPRLLDTLLGAAISWFAVSYLWPDWKYLQLDKVSHQALRSDAVYLLHIISQLQFGKSDDLKYRIARCNAHQYAAALSTTLSNMNNEPVKYKAYLQKGFDLLKLNYSLLSYISALGAYRDRMKNLQQTAQFLSGFYPVAKKIIYTLEHIEEIPEAIFNQQQESIETHLKELEKQEMTAEERAVFSLPYQQLNLITQLLPQFYGYFKKEINCQRAGAL
>NZ_LS483486.1|WP_105905353.1|1209278_1211231_-|adhesin
MTKENLQSVPQNTTASLVESNNNQTSPQMLQQSPKPSLLRLEQHIEKKDYEFACRELMVILEKMDANFGGVHDIEFDAPAQLAYLPEKLLIHFATRLANAITTLFSDPELAISEEGALKMISLQRWLTLIFASSPYVNADHILNKYNINPDSEGGFHLATDNSSIAKFCIFYLPESNVNMSLDALWAGNQQLCASLCFALQSSRFIGTASAFHKRAVVLQWFPKKLAEIANLDELPANILHDVYMHCSYDLAKNKHDVKRPLNELVRKHILTQGWQDRYLYTLGKKDGKPVMMVLLEHFNSGHSIYRTHSTSMIAAREKFYLVGLGHEGVDKIGREVFDEFFEISSNNIMERLFFIRKQCETFQPAVFYMPSIGMDITTIFVSNTRLAPIQAVALGHPATTHSEFIDYVIVEDDYVGSEDCFSETLLRLPKDALPYVPSALAPQKVDYVLRENPEVVNIGIAATTMKLNPEFLVTLQEIRDKAKVKIHFHFALGQSTGLTHPYVKWFIESYLGDDATAHPHAPYHDYLAILRDCDMLLNPFPFGNTNGIIDMVTLGLIGVCKTGDEVHEHIDEGLFKRLGLPEWLIADTRETYIECALRLAENHQERLELRRYIIENNGLQKLFTGDPRPLGKILLKKTNEWKRKHLSKK
>NZ_LS483486.1|WP_172450359.1|1211259_1211460_+|hypothetical-protein
MEYVLVYHINCFLALLGLLGLLGLLGLLGLLGLLGLLGLLGLLGLLGLLGLLGLLGLLGLLGLFDI

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Crispr_ID: NZ_LS483486_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS483486_4

1268042-1268136

Orphan

Consensus_repeat	Method
CAGGAGCTGCTGCCTGTGGTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS483486_4

>merge|NZ_LS483486|4|1268042-1268136|CRISPRCasFinder
CAGGAGCTGCTGCCTGTGGTGCTTGTGCAGTAGTAGCAGGAGCTGCTGCCTGTGGTGCTTGTGCAGTAGTAGCAGGAGCTGCTGTCTGTGGTGCT

>NZ_LS483486|4|4|1268042-1268136|CRISPRCasFinder
CAGGAGCTGCTGCCTGTGGTGCT	TGTGCAGTAGTAGCAGGAGCTGCTGCCTGTGGTGCTTGTGCAGTAGTAG
CAGGAGCTGCTGTCTGTGGTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS483486.1\|WP_005667231.1\|1260609_1261854_-\|uracil-permease	unknown	unknown	gnl\|CDD\|273276
NZ_LS483486.1\|WP_011272709.1\|1277287_1278541_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_LS483486.1\|WP_005663527.1\|1265487_1266912_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_LS483486.1\|WP_011272712.1\|1268785_1271446_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_LS483486.1\|WP_042594260.1\|1257293_1257587_+\|LapA-family-protein	unknown	unknown	gnl\|CDD\|226294
NZ_LS483486.1\|WP_005694297.1\|1274069_1275977_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_LS483486.1\|WP_105905556.1\|1281351_1282050_-\|16S-rRNA-pseudouridine(516)-synthase-RsuA	unknown	unknown	gnl\|CDD\|236774
NZ_LS483486.1\|WP_105898029.1\|1280153_1281350_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182964
NZ_LS483486.1\|WP_005687344.1\|1262707_1264774_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
NZ_LS483486.1\|WP_011272710.1\|1276063_1277209_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_LS483486.1\|WP_005650156.1\|1264785_1265328_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_LS483486.1\|WP_005650143.1\|1259848_1260544_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|168719
NZ_LS483486.1\|WP_005694286.1\|1257586_1258777_+\|lipopolysaccharide-assembly-protein-LapB	unknown	unknown	gnl\|CDD\|225504
NZ_LS483486.1\|WP_042594257.1\|1261957_1262584_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_LS483486.1\|WP_042599676.1\|1279321_1280122_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS483486.1\|WP_005650140.1\|1259499_1259820_+\|stress-response-translation-initiation-inhibitor-YciH	unknown	unknown	gnl\|CDD\|181613
NZ_LS483486.1\|WP_005652973.1\|1278561_1279224_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_LS483486.1\|WP_011272711.1\|1272360_1273803_-\|YdgA-family-protein	unknown	unknown	gnl\|CDD\|227644
NZ_LS483486.1\|WP_005687337.1\|1271745_1272204_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_LS483486.1\|WP_005667227.1\|1258800_1259493_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695

Protein	Function_ID	Function_description	E-value
NZ_LS483486.1\|WP_005667231.1\|1260609_1261854_-\|uracil-permease	gnl\|CDD\|273276	TIGR00801, Uric_acid_permease, uracil-xanthine permease. The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40) Most of the functionally characterized members of the NCS2 family are transporters specific for nucleobases including both purines and pyrimidines. However, two closely related rat members of the family, SVCT1 and SVCT2, localized to different tissues of the body, cotransport L-ascorbate and Na+ with a high degree of specificity and high affinity for the vitamin. The NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39). [Transport and binding proteins, Nucleosides, purines and pyrimidines].	8.32353e-137
NZ_LS483486.1\|WP_011272709.1\|1277287_1278541_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_LS483486.1\|WP_005663527.1\|1265487_1266912_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_LS483486.1\|WP_011272712.1\|1268785_1271446_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_LS483486.1\|WP_042594260.1\|1257293_1257587_+\|LapA-family-protein	gnl\|CDD\|226294	COG3771, COG3771, Predicted membrane protein [Function unknown].	2.4846e-37
NZ_LS483486.1\|WP_005694297.1\|1274069_1275977_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_LS483486.1\|WP_105905556.1\|1281351_1282050_-\|16S-rRNA-pseudouridine(516)-synthase-RsuA	gnl\|CDD\|236774	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA.	1.17486e-121
NZ_LS483486.1\|WP_105898029.1\|1280153_1281350_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182964	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_LS483486.1\|WP_005687344.1\|1262707_1264774_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_LS483486.1\|WP_011272710.1\|1276063_1277209_+\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_LS483486.1\|WP_005650156.1\|1264785_1265328_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	1.7407e-98
NZ_LS483486.1\|WP_005650143.1\|1259848_1260544_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|168719	PRK06893, PRK06893, DnaA regulatory inactivator Hda.	9.5224e-149
NZ_LS483486.1\|WP_005694286.1\|1257586_1258777_+\|lipopolysaccharide-assembly-protein-LapB	gnl\|CDD\|225504	COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism].	0
NZ_LS483486.1\|WP_042594257.1\|1261957_1262584_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	4.36166e-133
NZ_LS483486.1\|WP_005650140.1\|1259499_1259820_+\|stress-response-translation-initiation-inhibitor-YciH	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	1.7732e-58
NZ_LS483486.1\|WP_005652973.1\|1278561_1279224_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	7.9376e-97
NZ_LS483486.1\|WP_011272711.1\|1272360_1273803_-\|YdgA-family-protein	gnl\|CDD\|227644	COG5339, COG5339, Uncharacterized protein conserved in bacteria [Function unknown].	7.84943e-114
NZ_LS483486.1\|WP_005687337.1\|1271745_1272204_+\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	8.28169e-91
NZ_LS483486.1\|WP_005667227.1\|1258800_1259493_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	1.77315e-142

>NZ_LS483486.1|WP_005663527.1|1265487_1266912_-|dihydrolipoyl-dehydrogenase
MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKHANKNGIYFSEPRIELDEVRAGKEAVVAKLTGGLAGMAKARKVTVVEGLATFTDSHTLVARDRDGNPTTVKFDNAIIAAGSRPVQLPFIPHEDPRIWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKDVVGIYTKQVEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPNGKLIDAGKAGVEVDDRGFIHVDKQMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGQKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASECSEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNAKAKKK
>NZ_LS483486.1|WP_005650156.1|1264785_1265328_-|adenine-phosphoribosyltransferase
MTTQLDLIKSSIKSIPNYPKEGIIFRDITTLLEVPAAFKATIDLIVEQYRDKGITKVLGTESRGFIFGAPVALALGLPFELVRKPKKLPRETISQSYQLEYGQDTLEMHVDAISEGDNVLIIDDLLATGGTVEATVKLVQRLGGAVKHAAFVINLPELGGEKRLNNLGVDCYTLVNFEGH
>NZ_LS483486.1|WP_005687344.1|1262707_1264774_-|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKTIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQISQHLAHILTQENIPFEEPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQKSSDNNEHFSFLAKHISPENVQFFYQVIVSGRKDLSNAPNRRIGAEMTLLRALAFHPKFLTAVPKANTTITPPPSTPSAVENTGNYVDVPVLSQSIKSAYSQVKPNKTSIPNLASLSALDALEHLTQLENQERQEHKAESLAVVSETLHHIQELDEEKSHKKMTALPVREMTEPKPKHIEKPTVQPNAAQAPQKNSTEENSSDDNVEIAQDEQEILSADTYRWEWSNPELAKADTGVRPSDIKQAILKDITPELRLKIITKTQQQDEWADIVERSGLTGFSKELALNCFLQSKTDDEINLGLHSEKSHLRQDRSIKNLAEALSKLQGKDIRLTINLDDSNVTTPIEYRRNIYQALREKAQNELQKDSKLQILLNEFDAKLDVESIRPV
>NZ_LS483486.1|WP_042594257.1|1261957_1262584_-|uracil-phosphoribosyltransferase
MKLVEVRHPLVKHKLGVMREAEIDTKKFRELATEIGSLLTYEATSDLETEKVTINGWNGPVEIDRIKGKKVTVVPILRAGLGMMDGVLEHVPSARISVVGIYRNEETLEPVPYFQKLASDLEERLSIVVDPMLATGGSMIATLDLLKAKGCKHIKVLVLVAAPEGIKALEAAHPDIELYCASIDSHLNEQGYIIPGLGDAGDKIFGTK
>NZ_LS483486.1|WP_005667231.1|1260609_1261854_-|uracil-permease
MTNQIPPSLAENQSKLKQSFVGLQMLFVAFGALVLVPLITGLDSNTALLTAGVGTLLFQFCTGKQVPIFLASSFAFIAPIQYGVQTWGIATTMGGLAFTGLVYFALSTLVKLRGAEALQRFFPPVVVGPVIIIIGMGLAPIAVDMSLGKNSAYAYNDAILVSMVTLLTTLSVAVFAKGLMKLIPIMFGITAGYILCLFLGLINFQPVIDAPWFSLPKLTTPEFNLEAILYMLPIAIAPAVEHVGGIMAISSVTGKDFLKKPGLHRTLLGDGVATAAASLVGGPPNTTYAEVTGAVMLTRNFNPNIMTWAAVWAIAISFCGKVGAFLSTIPTIVMGGIMMLVFGSIAVVGMSTLIRGKVDVTEARNLCIISVVMTFGIGNMFVDVGNVSIKGISLCAIVAIILNLVLPKAKNEVE
>NZ_LS483486.1|WP_005650143.1|1259848_1260544_-|DnaA-regulatory-inactivator-Hda
MNKQLPLPIHQIDDATLENFYGDNNLLLLDSLRKNSSDLKQPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKEILNL
>NZ_LS483486.1|WP_005650140.1|1259499_1259820_+|stress-response-translation-initiation-inhibitor-YciH
MSDSVLVYSTDVGRIKEEKASVARPKGDGVVRIQKQTSGRKGAGVSVITGLDLSDEELKKLAAELKKRCGCGGAVKNGIIEIQGEKRDLLKQLLEQKGFKVKLSGG
>NZ_LS483486.1|WP_005667227.1|1258800_1259493_+|orotidine-5'-phosphate-decarboxylase
MTSKIIVALDFEKEAEALALVDQIDPSLCRLKVGKEMFTTLGINFVKQLHQRNFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLRMMEDAKKILEPYGKDAPLLIAVTVLTSMEDLDLLQIGINASPMEQVLRLAHLTQRAGLDGVVCSPQEVEILRNACGEDFKLVTPGIRPIGTDFGDQRRVMTPTAAIRAGSDYLVIGRPITQADNPAEVLRSINVSIG
>NZ_LS483486.1|WP_005694286.1|1257586_1258777_+|lipopolysaccharide-assembly-protein-LapB
MIELLFLLLPIAAAYGWYMGRRSAKKDQDDISNKLSRDYVTGVNFLLSNQTDKAVDLFLDMLQKQEIENEIESHSQFEAELTLGNLFRSRGEVDRALRIHQALDLSPNYTFEQKLLAKQQLARDFMVVGFFDRAENLYILLVDEPEFAENALQQLLVIYQKTKEWKKAVNIAEKLAKIKPQENNIELAQCYCEYSQSLEPESAVEKRSVLQKALSVSPTCVRASLLLANLAMLDGQYQQAVKILENVLEQNPDYTGEILLPLKHCYEELNQLDNFELFLIRAGQIINNDEVELALAKLIEEKDGKSAAQAKLYQQLTKKPSTLIFHRFMQYQIDDAEDGRGKESLILLHKMVGERIKQTSPYRCTNCGYQIHKLLWNCPSCRQWESIKPVSNQEHN
>NZ_LS483486.1|WP_042594260.1|1257293_1257587_+|LapA-family-protein
MIKYILGIVIFIAIVLVAITIGANNDQIITFNYIVAESQFQLSSLVAILFGLGLILGWLITAFFYIKLKLKNMALARQVKSQTLQINELTTTRDKVV
>NZ_LS483486.1|WP_011272712.1|1268785_1271446_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSEILKNDIDPIETQDWLQSLDSLIREEGVERAQYIVEQVIGQARTSGVSLPTGVTTDYVNTIPVAEQPAYPGDHAIERRIRSAVRWNAIAMVLRSQKKDLDLGGHISTFQSAATMYEVCYNHFFKAATEKNGGDLIFFQGHAAPGMYARAFLEGRLTEEQMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLDNRGLKDTKDQKVYAFLGDGEMDEIESKGALTFAAREKLDNLIFTISCNLQRLDGPVNGNGKIVQELEGLFTGAGWEVIKVLWGSDWDKLFAKDTSGKLTQLMMEVVDGDYLTFKSKDGAYIREHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQNATKPVVILAHQVKGYKIPEAESKNTAHQSKKMSYESLKGFRDFFELPLTDEQVEKLEYIKFAEGTPEYEYLHGHRKALNGYVPARRTKFDVEYKVPALEEFKALLEEQPRGISTTMAFTRALNILLKDKNIGKTIVPMIADEARTFGMEGLFRQVGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEGINELGATASWLAAANSYSVNNQPMIPFFIYYSMFGFQRVGDMMWAAGDQLARGFMVGGTSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPSFAFEVAVIMQDGINRMYGEKQEDVFYYMTTLNEVMDQPAMPAGAEEGIRKGLYKFETVEGKKGKGHVQLLGSGAIMRHVREAAQILANDYGVTSDVFSAPSFNELAREGHDAARWNLLHPTETQRVPYVAQVLADLPTVASTDYVKGYADQIRAFVPSKHYHVLGTDGFGRSDSRANLREHFEVDARYVVVAALSQLAKEGTVSNQVVADAIAKFGLNVDRINPLYA
>NZ_LS483486.1|WP_005687337.1|1271745_1272204_+|methylglyoxal-synthase
MQTTTRTLTQHKRIALVAHDSCKKNLLNWTQKHKEALKPHILYATGTTGHILERETGLSIQSLLSGPMGGDQQLGGLIAEKKIDMMIFFWDPMNAAPHDPDVKALMRIATVWNIPVAINQSSADFLLTSVLFEQDVEIDVPDYEGYLKERLA
>NZ_LS483486.1|WP_011272711.1|1272360_1273803_-|YdgA-family-protein
MKKSKIAAGVVISLAAVWCAGAWFTGKKAEEEYLHQLKQLNQLFTKTEALEESKIFYKNIKFERGLFASHIQDQIEIHKANETIIIPLSSTLYHGPLPLDRVAKLNFVPAIFSSQTLLGKNATTQAFFDITESEKPLQLNFAMNYSLSGNAELKLASGQYHNEQSKTDFDWSNVVLNIDLNQNTPNNYVLSVDTFNSNAPNHAVSTASSIKIKDLVVQGSLQSTKWPFIYSGNINSKIGYFEQNTESPETGEKFSLIQKNSQANLTTQVEGDTVNIINKTNLDELHINGNNLGKVTNNVEFNHIDGNALQELLNILVAIGKADSDMPLSKTLVQKLQQAGMIIANNQPQIKFTPLSISDEKGKVALDLNIALVPNPKFDLMRSGLYKQFKDFSINFDVNKETAISLLSKFVPENQKQDFVHRLNELVTEGEVNDIIVNTDKTVTLTLALENNDLKLNGKPIPEEQLKVVLFILVMGGFGR
>NZ_LS483486.1|WP_005694297.1|1274069_1275977_+|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAVMDGDKARVIENAEGARTTPSIIAYTDNETLVGQPAKRQAITNPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITRADNGDAWVNVKGDKLAPPQISAEVLKKMKKTAEDFLGESVTEAVITVPAYFNDAQRQATIDAGKIAGLDVKRIINEPTAAALAFGLGSSKENQVIAVYDLGGGTFDISIIEIDNFDGEQTFEVLATGGNTHLGGEDFDNRVIDYIIDEFKKEQNIDLRNDAMALQRVKEAAEKAKIELSSAQSTEVNLPYITADATGPKHLALNITRAKLEALVEDLVASSIESLKAVLKDADKGVSEIHDIILVGGQTRMPLVQQKVAEFFGKEARKDVNPDEAVAIGAAVQGGVLKGDVKDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLEGINPAPRGMPQIEVTFDIDANGVINVSAKDKNTGKEQQIRIQASSGLSDEEIQQMVRDAEANADADRKFEEVVQARNQADGIAHATRKQIAEAGDALSVADKEKIEAAVAELETAAKGEDKAEIEAKIEAVIKASEPLMQAVQAKAQQAGGEQPQQSSAKDDGVVDAEFEEVKDNK
>NZ_LS483486.1|WP_011272710.1|1276063_1277209_+|molecular-chaperone-DnaJ
MAKKDYYEVLGLQKGASEDDIKRAYKRLASKHHPDKNQGSKEAEEKFKEINEAYEVLGDDQKRAAYDQYGHAAFEQGGGTGGFGGGFGGADFGDMFGDIFGDIFGGGRGRQRVVRGEDLRYDLEISLEEAVKGTTKDIQINTLAHCDSCGGSGAEKGSKVETCPHCHGSGRIRRQQGFFVSESICPTCHGSGKKIEKPCRSCHGEGRVHKKENLSVKIPAGVDTGNQLRLAGKGAAGENGAPAGDLYVVIHVREHNIFERDGSNLYCEVPISFATAALGGEIEVPTLDGRVKLKIPAETQTGKLFRMRGKGVASTRSGYAGDLICRIVVETPVNLTSEQKELLHKLEESLQGKDLSKHAPKSSGFLDGVKKFFDNLGKSDK
>NZ_LS483486.1|WP_011272709.1|1277287_1278541_-|glutamate-5-semialdehyde-dehydrogenase
MLEQMGKQAKDAAFILAQLTTAEKNCALSIIAEQLQQQAPLILAENAKDIELAKQNGLSDALIDRLLLTQERLQSIANDVRHVISLADPVGKIIDGGTLDSGLKIERVRTPLGVIGTIYEARPNVTIDVASLCLKTGNAVILRGGKETQFSNKILIEVVQNALEQAGLPKFAVQAITDPNRELVMQLLKLDRYVDMIIPRGGSGLHELCKQHSTIPVIVGGVGVCHTFVEKSADQNKAIFVIDNAKTQRPSTCNTLETLLVQHSIAEEFLPKLVSHLATKNVKYHAKSTALNILKQAGANVCEVTEKELRKEWGSLDLNVVVVEDIHAAIEHIRQYGTQHSESILTSSQNLARQFINQVDAAAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTSYKWVCEGEYTVRK
>NZ_LS483486.1|WP_005652973.1|1278561_1279224_-|trimeric-intracellular-cation-channel-family-protein
MLLSILYIIGITAEGMTGALAAGREKMDIFGVIIIASVTAIGGGSVRDVLLGHYPLGWVKHPEYFLMVASAAVITVYVAPFINHFMRYFRTIFLVLDAMGLVVYSIIGAQIAMDMGHSLTIVCIAGCITGAFGGVLRDMLCNRIPLVFQKELYASIALFATLTYYALSTLQVEHTLAVLLTLISSFTLRLLAIHFEWGLPVFNYQELTSEEQDKLPNKKK
>NZ_LS483486.1|WP_042599676.1|1279321_1280122_+|hypothetical-protein
MSEQSSKYIAALLAVLSISMVLGIDLFIFSLQSEKQTMPHLGIGVLVAQLISLLVFYRGEICPGQRGRLIKVNLTFAIYWAVWLLISLLQNNHMLTNVMSVCGLSVVYFIWKQPKSEKIRNSFLLMAALIAGLGCLSYLMIFTVLPASAFAEYNPFAPILSGVILANLALVIARNRLQGFIALLPLVMIILLALNALAIFLFLLLNGMESAVNSDSIFAYIIYFVCHFVIAAILILHSFQKWKLSANSLFILLFIAVCLPLWMVFV
>NZ_LS483486.1|WP_105898029.1|1280153_1281350_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MNQQKSTFIFILTLGILSMLPPFGVDMYLPSFLEIAKDLDVSPEQVQHTLTSFAYGMAFGQLFWGPFGDSFGRKPIILLGVIVGALTALVLTEINSVGNFTALRFVQGFFGAAPVVLSGALLRDLFSKDQLSKVMSTITLVFMLAPLVAPIIGGYIVKFFHWHAIFYVISLVGLLAAALVFFIIPETHKKENRIPLRLNIIARNFLLLWKQKEVLGYMFAASFGFGGLFAFVTAGSIVYIGIYGVPVDQFGYFFMMNIVTMIFASFLNSRFVTKVGAETMLRVALTIQFLSGMWLILTALLDLGFWSMAIGVALFIGPNPVISSNTMASALERCPQMAGTANSLIGSVRFAVGAIMGSLVASMKMDTAAPMLFTMGGCVAISVLAYYFLTSRNLKSRG
>NZ_LS483486.1|WP_105905556.1|1281351_1282050_-|16S-rRNA-pseudouridine(516)-synthase-RsuA
MRLDKFIAENTGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDKIYFEDELLTWVEEGQYFMLHKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGFVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYAAACSEGILLRGEKEPTKPAKLEILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLVK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LS483486_1	1.1\|381173\|39\|NZ_LS483486\|CRISPRCasFinder	381173-381211	39	NZ_LS483486.1	437771-437809	1	0.974
NZ_LS483486_4	4.1\|1268065\|49\|NZ_LS483486\|CRISPRCasFinder	1268065-1268113	49	NZ_LS483486.1	1268029-1268077	1	0.98

1. spacer 1.1|381173|39|NZ_LS483486|CRISPRCasFinder matches to position: 437771-437809, mismatch: 1, identity: 0.974

gcccaccaaaatatcttacgattgtttgttggtgggcta	CRISPR spacer
gcccaccaaaatatctcacgattgtttgttggtgggcta	Protospacer
****************.**********************

2. spacer 4.1|1268065|49|NZ_LS483486|CRISPRCasFinder matches to position: 1268029-1268077, mismatch: 1, identity: 0.98

tgtgcagtagtagcaggagctgctgcctgtggtgcttgtgcagtagtag	CRISPR spacer
tgtgcagtagtatcaggagctgctgcctgtggtgcttgtgcagtagtag	Protospacer
************ ************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

648910 : 656206

Mannheimia_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111722486.1\|648910_649393_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	9.5e-31	45.5
WP_005647194.1\|650612_650972_-	hypothetical protein	NA	NA	NA	NA
WP_005688797.1\|650968_651205_-	hypothetical protein	NA	NA	NA	NA
WP_005688799.1\|651201_651771_-	hypothetical protein	NA	NA	NA	NA
WP_111722488.1\|651873_652308_-	single-stranded DNA-binding protein	A0A059WRL7	Vibrio_phage	1.1e-17	35.4
WP_111722490.1\|652317_652971_-	ERF family protein	A0A077KCB6	Edwardsiella_phage	7.5e-31	42.9
WP_111722492.1\|652981_653482_-	siphovirus Gp157 family protein	B4XYS3	Lactobacillus_phage	6.2e-17	36.6
WP_154685869.1\|653491_653635_-	hypothetical protein	NA	NA	NA	NA
WP_172450353.1\|653637_653799_-	hypothetical protein	NA	NA	NA	NA
WP_048942415.1\|653767_653992_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_111722494.1\|653991_654333_-	hypothetical protein	NA	NA	NA	NA
WP_005651093.1\|654346_655084_-	site-specific DNA-methyltransferase	A0A0E3U2R2	Fusobacterium_phage	5.2e-113	77.5
WP_111722496.1\|655174_656206_-	HNH endonuclease	D0UIK6	Aggregatibacter_phage	5.2e-42	82.8

DBSCAN-SWA_2

659519 : 665506

Mannheimia_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044332609.1\|659519_660173_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	1.2e-31	39.0
WP_005655320.1\|660274_660457_+	Cro/Cl family transcriptional regulator	Q5G8T3	Enterobacteria_phage	1.6e-10	51.7
WP_048950185.1\|660511_660952_+	hypothetical protein	A0A0U4B0E3	Pseudomonas_phage	8.1e-13	32.6
WP_038441201.1\|661000_661675_+	phage antirepressor KilAC domain-containing protein	D0UIL6	Aggregatibacter_phage	1.1e-80	68.4
WP_111722498.1\|661671_662394_+	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	5.9e-61	68.8
WP_042602862.1\|662390_663017_+	replication P	A0A0M3LS65	Mannheimia_phage	3.4e-28	37.5
WP_111722500.1\|663013_663604_+	adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	2.0e-51	56.6
WP_005692600.1\|663608_664118_+	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	1.1e-69	76.2
WP_105891871.1\|664118_664547_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	5.0e-15	39.0
WP_111722502.1\|664577_664763_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_111722504.1\|664918_665506_+	recombination protein NinG	A0A2I7RAC0	Vibrio_phage	3.7e-37	48.5

DBSCAN-SWA_3

668865 : 701117

Haemophilus_phage(21.43%)

tail,terminase,tRNA,plate,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006995063.1\|668865_669468_+	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	3.9e-58	55.4
WP_111722512.1\|669460_669784_+	DUF2570 family protein	Q7Y5U9	Haemophilus_phage	8.0e-18	48.6
WP_105897882.1\|669695_669977_+	hypothetical protein	Q776X1	Haemophilus_phage	1.4e-29	71.1
WP_111722514.1\|669978_670326_-	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.5e-22	56.1
WP_005688873.1\|670309_670561_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	9.9e-16	52.9
WP_105896317.1\|670638_671157_+\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	3.6e-20	39.2
WP_005688879.1\|672499_673816_+	DUF1073 domain-containing protein	A0A2K9V3H1	Faecalibacterium_phage	3.0e-47	32.0
WP_005688881.1\|673796_675014_+\|capsid	minor capsid protein	I3PGT9	Xanthomonas_phage	1.8e-33	35.6
WP_005688883.1\|675139_676213_+	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	4.2e-55	39.3
WP_005643361.1\|676226_676646_+	DUF2190 family protein	NA	NA	NA	NA
WP_006995054.1\|676653_677655_+	DUF2184 domain-containing protein	A0A0N9SG07	Pseudomonas_phage	2.9e-50	36.6
WP_005688887.1\|677657_677846_+	hypothetical protein	NA	NA	NA	NA
WP_005688889.1\|677849_678200_+	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_005688891.1\|678192_678651_+	hypothetical protein	A0A2I7R754	Vibrio_phage	1.8e-15	34.5
WP_005688893.1\|678650_679010_+	hypothetical protein	NA	NA	NA	NA
WP_005651165.1\|679011_679521_+	hypothetical protein	NA	NA	NA	NA
WP_005688895.1\|679507_680581_+	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	6.5e-64	36.0
WP_005643344.1\|680626_681052_+	DUF3277 family protein	A0A2K9V3K6	Faecalibacterium_phage	4.0e-25	45.9
WP_005643342.1\|681051_681534_+	hypothetical protein	NA	NA	NA	NA
WP_005643340.1\|681569_681722_+	hypothetical protein	NA	NA	NA	NA
WP_005688898.1\|681718_684049_+	tape measure protein	K7RVL7	Vibrio_phage	6.2e-35	29.3
WP_005688900.1\|684139_684721_+	hypothetical protein	NA	NA	NA	NA
WP_005643334.1\|684717_685032_+	hypothetical protein	NA	NA	NA	NA
WP_111722517.1\|685028_685985_+	hypothetical protein	A0A0N9RT60	Pseudomonas_phage	1.1e-33	33.4
WP_005688905.1\|685987_686659_+	hypothetical protein	A0A2K9V3M0	Faecalibacterium_phage	2.2e-17	32.1
WP_005688907.1\|686655_687021_+	hypothetical protein	K4RI30	Pseudomonas_phage	4.5e-09	31.1
WP_005688909.1\|687013_688450_+\|plate	baseplate J/gp47 family protein	E5AGC3	Erwinia_phage	4.1e-45	29.0
WP_044332548.1\|688458_689085_+	DUF2612 domain-containing protein	A0A0N9SSD8	Pseudomonas_phage	1.0e-21	37.4
WP_111722519.1\|689081_691340_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	1.1e-172	56.2
WP_005688914.1\|691342_691969_+	hypothetical protein	Q94MX9	Haemophilus_virus	2.7e-30	45.2
WP_006995417.1\|691961_692450_+	hypothetical protein	F6MIM0	Haemophilus_phage	1.9e-47	56.2
WP_005641687.1\|692625_692745_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_005688922.1\|692806_693652_+	hypothetical protein	F6MIM2	Haemophilus_phage	3.1e-117	71.4
WP_005688923.1\|693690_693954_-	hypothetical protein	F6MIM3	Haemophilus_phage	7.2e-33	79.1
WP_005654873.1\|694632_695358_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_005654871.1\|695410_695863_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_005649169.1\|695929_697144_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.5e-32	35.5
WP_005654861.1\|697203_697584_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.4e-53	80.6
WP_005649164.1\|697641_697965_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	4.4e-24	46.7
WP_011272012.1\|697977_698502_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_005669116.1\|698552_699239_+	DUF2625 domain-containing protein	NA	NA	NA	NA
WP_011272011.1\|699257_701117_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.3e-109	42.3

DBSCAN-SWA_4

768114 : 772436

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048941374.1\|768114_768321_+	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	9.6e-09	49.3
WP_005666693.1\|768394_768601_+	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
WP_005666693.1\|768674_768881_+	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
WP_005666693.1\|768954_769161_+	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
WP_005666693.1\|769234_769441_+	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
WP_005666693.1\|769514_769721_+	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
WP_005666693.1\|770086_770293_+	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
WP_105872984.1\|770267_772436_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	3.6e-194	51.7

DBSCAN-SWA_5

929802 : 1009035

Haemophilus_virus(59.57%)

tail,integrase,head,terminase,portal,holin,plate,protease,tRNA,capsid

attL 924750:924767|attR 966482:966499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
924750:924767	attL	NA	NA	NA	NA
WP_172450357.1\|929802_931023_+\|protease	FtsH protease activity modulator HflK	K4F6D5	Cronobacter_phage	2.4e-06	24.3
WP_005648629.1\|931022_931910_+\|protease	protease modulator HflC	A0A2I7S9Z3	Vibrio_phage	1.8e-06	26.6
WP_075913399.1\|931951_932386_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_005648627.1\|932547_933675_-	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_005654416.1\|933850_935701_-	sialic acid TRAP transporter substrate-binding protein SiaT	NA	NA	NA	NA
WP_005654417.1\|935765_936752_-	sialic acid TRAP transporter substrate-binding protein SiaP	NA	NA	NA	NA
WP_050838148.1\|937104_937791_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_005668146.1\|937835_938738_+	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_005654433.1\|938730_939597_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_005654434.1\|939607_940489_+	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_005660891.1\|940636_941449_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_105905509.1\|941585_942731_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_111722528.1\|942926_944003_-	porin	NA	NA	NA	NA
WP_005687959.1\|944265_944730_-	ribonuclease HI	J9Q745	Salmonella_phage	5.0e-45	52.9
WP_105905507.1\|944790_945558_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.1e-36	35.3
WP_014550581.1\|946239_947754_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_038440907.1\|947814_949023_-	sugar transporter	NA	NA	NA	NA
WP_105905506.1\|949022_950198_-	hypothetical protein	NA	NA	NA	NA
WP_005649599.1\|950201_950789_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	2.8e-24	40.5
WP_005654445.1\|950797_951439_-	uridine kinase	A0A1V0SD85	Indivirus	4.5e-28	35.2
WP_005694416.1\|951661_952978_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	3.1e-185	80.7
WP_005630160.1\|953211_953742_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	3.7e-20	36.9
WP_111722531.1\|954197_955211_-\|integrase	site-specific integrase	Q94N03	Haemophilus_virus	8.5e-191	98.2
WP_111722533.1\|955210_955804_-	hypothetical protein	NA	NA	NA	NA
WP_111722535.1\|955803_956010_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_111722537.1\|956010_956244_-	DUF4177 domain-containing protein	A0A0A7NPW2	Enterobacteria_phage	1.9e-16	56.6
WP_111722538.1\|956254_956548_-	hypothetical protein	NA	NA	NA	NA
WP_111722540.1\|956548_957124_-	phage repressor protein CI	Q94N02	Haemophilus_virus	8.2e-106	97.4
WP_111722542.1\|957241_957454_+	DNA-binding protein	P79674	Haemophilus_phage	1.9e-28	95.7
WP_105897787.1\|957515_957908_-	hypothetical protein	NA	NA	NA	NA
WP_172450358.1\|957965_958202_-	hypothetical protein	NA	NA	NA	NA
WP_005642993.1\|958303_958672_+	hypothetical protein	P79676	Haemophilus_phage	3.7e-67	100.0
WP_111722544.1\|958671_958857_+	hypothetical protein	Q775F8	Haemophilus_virus	5.2e-30	98.4
WP_015967401.1\|958868_959150_+	hypothetical protein	Q775F7	Haemophilus_virus	6.1e-46	100.0
WP_111722546.1\|959227_961558_+	replication endonuclease	Q94N00	Haemophilus_virus	0.0e+00	97.0
WP_061724366.1\|961640_961877_+	hypothetical protein	NA	NA	NA	NA
WP_061724365.1\|961879_962386_+	pyrophosphatase	A0A0M3LTD8	Mannheimia_phage	1.8e-27	47.3
WP_061724364.1\|962396_962915_+	phage N-6-adenine-methyltransferase	Q94MZ8	Haemophilus_virus	3.3e-98	98.3
WP_005667742.1\|963012_963189_+	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	4.5e-15	67.8
WP_005642973.1\|963216_963618_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	2.3e-70	100.0
WP_080359101.1\|963644_963905_-	ogr/Delta-like zinc finger family protein	Q1I103	Pasteurella_virus	1.4e-25	59.3
WP_111722548.1\|963985_965023_-\|portal	phage portal protein	Q94MZ7	Haemophilus_virus	2.3e-199	99.7
WP_111722550.1\|965012_966836_-\|terminase	terminase ATPase subunit family protein	Q94MZ6	Haemophilus_virus	0.0e+00	96.7
966482:966499	attR	NA	NA	NA	NA
WP_048950705.1\|967053_967947_+\|capsid	GPO family capsid scaffolding protein	Q94MZ5	Haemophilus_virus	1.5e-143	93.3
WP_111722551.1\|967950_968961_+\|capsid	phage major capsid protein, P2 family	Q94MZ4	Haemophilus_virus	6.1e-181	95.5
WP_111722553.1\|968974_969820_+\|terminase	terminase endonuclease subunit	Q94MZ3	Haemophilus_virus	8.5e-152	97.5
WP_111722555.1\|969812_970265_+\|head	head completion/stabilization protein	Q94MZ2	Haemophilus_virus	9.1e-76	96.7
WP_111722557.1\|970252_970735_+\|tail	phage tail protein	Q94MZ1	Haemophilus_virus	1.3e-56	64.8
WP_075985601.1\|970731_971457_+	phage virion morphogenesis protein	Q1I0Z5	Pasteurella_virus	2.5e-19	33.2
WP_005667729.1\|971543_971702_+	hypothetical protein	NA	NA	NA	NA
WP_111722559.1\|971736_972867_+	DUF2586 domain-containing protein	Q94MY9	Haemophilus_virus	3.0e-213	97.1
WP_005667727.1\|972870_973323_+	DUF2597 family protein	Q94MY8	Haemophilus_virus	6.9e-76	100.0
WP_005667726.1\|973409_973646_+\|holin	holin	Q94MY7	Haemophilus_virus	4.8e-36	100.0
WP_110426678.1\|973638_974199_+	lysozyme	Q94MY6	Haemophilus_virus	1.3e-95	96.6
WP_105888544.1\|974183_974531_+	hypothetical protein	Q94MY5	Haemophilus_virus	3.0e-55	99.1
WP_005667723.1\|974723_975032_+	hypothetical protein	Q775G2	Haemophilus_virus	1.2e-47	100.0
WP_005667722.1\|975040_975211_+	hypothetical protein	Q1I0Y8	Pasteurella_virus	4.2e-18	76.8
WP_111722561.1\|975220_977290_+\|tail	phage tail tape measure protein	Q94MY4	Haemophilus_virus	1.2e-279	73.8
WP_015979431.1\|977293_977629_+	DUF2590 family protein	Q94MY3	Haemophilus_virus	2.3e-52	99.1
WP_111722563.1\|977621_978791_+\|plate	baseplate J/gp47 family protein	Q94MY2	Haemophilus_virus	4.4e-215	97.6
WP_015979433.1\|978800_979325_+	hypothetical protein	Q94MY1	Haemophilus_virus	4.8e-97	100.0
WP_111722565.1\|982149_982752_+	hypothetical protein	Q94MX9	Haemophilus_virus	1.2e-96	93.0
WP_105888046.1\|982793_983561_+	hypothetical protein	Q94MX8	Haemophilus_virus	8.9e-132	96.9
WP_105897782.1\|983547_984174_+	hypothetical protein	Q94MX7	Haemophilus_virus	2.0e-73	100.0
WP_111722567.1\|984160_985762_+	hypothetical protein	Q94MX6	Haemophilus_virus	1.6e-276	90.1
WP_005649617.1\|986758_987316_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_005649619.1\|987416_988019_-	peroxiredoxin C	NA	NA	NA	NA
WP_011271894.1\|988155_989343_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_038440912.1\|989727_991089_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_005653606.1\|991201_991708_+	DUF2301 domain-containing membrane protein	NA	NA	NA	NA
WP_020910008.1\|991757_992759_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_005668509.1\|992936_993707_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	A0A291ATS8	Pandoravirus	1.1e-17	28.9
WP_005668507.1\|993706_994816_-	murein transglycosylase A	NA	NA	NA	NA
WP_111722569.1\|995210_997370_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	W6LLI2	Streptococcus_phage	5.1e-15	28.9
WP_042593621.1\|1004190_1006422_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_005654237.1\|1006782_1007412_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_042593622.1\|1007745_1009035_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.3e-94	52.1

DBSCAN-SWA_6

1294865 : 1379678

Mannheimia_phage(45.95%)

tail,integrase,head,lysis,terminase,portal,tRNA,protease,plate,capsid

attL 1306596:1306619|attR 1374666:1374689

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_105905558.1\|1294865_1296836_+\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_011272700.1\|1296832_1297006_+	DUF5363 domain-containing protein	NA	NA	NA	NA
WP_038441069.1\|1297107_1300548_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_011272698.1\|1300600_1301992_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	7.2e-23	31.2
WP_005694317.1\|1302185_1303076_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA
WP_172450360.1\|1303077_1304382_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_005689857.1\|1304669_1305350_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA
1306596:1306619	attL	NA	NA	NA	NA
WP_005687300.1\|1309882_1311646_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_005687298.1\|1311782_1312259_-	hypothetical protein	NA	NA	NA	NA
WP_005687296.1\|1312494_1313301_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005659609.1\|1313352_1314054_+	hydroxyacylglutathione hydrolase	A0A1X9I5D3	Streptococcus_phage	3.3e-08	29.1
WP_005659606.1\|1314097_1314958_-	SAM-dependent methyltransferase TehB	NA	NA	NA	NA
WP_042593951.1\|1315070_1317119_-\|tRNA	methionine--tRNA ligase	A0A2K9V939	Bandra_megavirus	2.2e-60	29.3
WP_042593952.1\|1317269_1318382_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_042593953.1\|1318428_1319091_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_042593954.1\|1319204_1319879_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA
WP_005672181.1\|1320586_1321597_-\|portal	phage portal protein	Q19UT6	Mannheimia_phage	2.1e-120	61.9
WP_105905561.1\|1321606_1323382_-\|terminase	terminase	A0A0M3LRV4	Mannheimia_phage	1.9e-217	65.2
WP_005672188.1\|1323450_1323879_+	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	3.8e-15	39.0
WP_005672190.1\|1323971_1324151_-	hypothetical protein	NA	NA	NA	NA
WP_005672192.1\|1324144_1324777_+	phage repressor protein	D0UIM5	Aggregatibacter_phage	4.1e-34	38.6
WP_105905562.1\|1324954_1325761_+\|capsid	GPO family capsid scaffolding protein	A0A0M3LNM2	Mannheimia_phage	2.5e-60	58.6
WP_005672196.1\|1325782_1326832_+\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	5.7e-89	51.9
WP_005672198.1\|1326843_1327494_+\|terminase	terminase	Q19US0	Mannheimia_phage	5.3e-45	46.0
WP_006995358.1\|1327786_1328293_+\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	1.3e-33	51.0
WP_005668467.1\|1328292_1328502_+\|tail	tail protein X	NA	NA	NA	NA
WP_005672202.1\|1328503_1328725_+	hypothetical protein	NA	NA	NA	NA
WP_005653059.1\|1328717_1329236_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.5e-37	46.6
WP_050848996.1\|1329220_1329571_+	chemotaxis protein	NA	NA	NA	NA
WP_005672208.1\|1329745_1329961_+	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	1.1e-10	47.9
WP_005672210.1\|1329957_1330428_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	2.8e-27	44.6
WP_105905564.1\|1330427_1330886_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	3.5e-27	51.1
WP_105905565.1\|1330863_1331136_-	hypothetical protein	NA	NA	NA	NA
WP_105905566.1\|1331205_1333941_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.2e-87	36.3
WP_005672227.1\|1334041_1334599_+	hypothetical protein	NA	NA	NA	NA
WP_005653088.1\|1334607_1335036_+	hypothetical protein	NA	NA	NA	NA
WP_005663413.1\|1335139_1335739_+\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	1.6e-43	65.5
WP_005663412.1\|1335740_1336079_+	GPW/gp25 family protein	Q19UQ6	Mannheimia_phage	4.5e-19	56.6
WP_105905567.1\|1336075_1336990_+\|plate	baseplate J/gp47 family protein	Q19UQ5	Mannheimia_phage	3.9e-94	59.2
WP_105905568.1\|1336976_1337519_+\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	3.9e-49	52.5
WP_105905569.1\|1337527_1340050_+\|tail	phage tail protein	Q94MY0	Haemophilus_virus	7.2e-255	69.1
WP_105905523.1\|1340061_1340670_+	hypothetical protein	Q94MX9	Haemophilus_virus	1.1e-79	80.5
WP_105905525.1\|1341300_1342485_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1S6KZY7	Salmonella_phage	1.7e-102	48.2
WP_105905526.1\|1342488_1342995_+\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	3.2e-53	59.5
WP_005672596.1\|1343063_1343363_+\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	1.5e-13	45.4
WP_005633772.1\|1343362_1343509_+\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	2.2e-07	65.0
WP_059358232.1\|1343636_1344074_+\|tail	phage tail protein	A0A0M3LQ18	Mannheimia_phage	5.4e-41	56.6
WP_005672606.1\|1345311_1345701_-	hypothetical protein	NA	NA	NA	NA
WP_005655087.1\|1345760_1347521_-	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_005655083.1\|1347765_1348527_-	HNH endonuclease	NA	NA	NA	NA
WP_005672613.1\|1348554_1348794_-	excalibur calcium-binding domain-containing protein	Q19UP2	Mannheimia_phage	1.9e-08	52.3
WP_005655079.1\|1348790_1349279_-	hypothetical protein	Q19UP0	Mannheimia_phage	7.1e-34	44.3
WP_005655077.1\|1350121_1350346_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	7.0e-13	55.9
WP_005655075.1\|1350400_1350643_-	hypothetical protein	NA	NA	NA	NA
WP_105905527.1\|1350677_1350971_-	hypothetical protein	NA	NA	NA	NA
WP_005633752.1\|1351051_1351207_+	hypothetical protein	NA	NA	NA	NA
WP_005672622.1\|1351423_1351927_+	hypothetical protein	NA	NA	NA	NA
WP_005663364.1\|1352114_1352402_+	hypothetical protein	NA	NA	NA	NA
WP_105905528.1\|1352492_1352705_+	hypothetical protein	NA	NA	NA	NA
WP_048955229.1\|1352773_1353154_+	hypothetical protein	NA	NA	NA	NA
WP_005663359.1\|1353157_1353400_+	hypothetical protein	NA	NA	NA	NA
WP_005691706.1\|1353525_1353834_+	hypothetical protein	NA	NA	NA	NA
WP_105905529.1\|1353843_1356030_+	replication endonuclease	Q94N00	Haemophilus_virus	1.7e-164	42.5
WP_105905530.1\|1356084_1356591_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	3.7e-25	42.9
WP_005652916.1\|1356590_1356758_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_105905531.1\|1356738_1358070_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B5FPC6	Escherichia_phage	5.4e-44	33.0
WP_105905532.1\|1359318_1359774_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_005691699.1\|1359790_1361278_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_042594613.1\|1361289_1363779_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	3.5e-28	26.0
WP_042611785.1\|1367945_1368797_-	FRG domain-containing protein	NA	NA	NA	NA
WP_005628626.1\|1372011_1372398_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_042593908.1\|1373538_1374663_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_042593909.1\|1374695_1375535_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	1.0e-40	39.3
1374666:1374689	attR	NA	NA	NA	NA
WP_011272655.1\|1375578_1376376_-	Zn-ribbon-containing protein	NA	NA	NA	NA
WP_005631781.1\|1376366_1376747_-	SufE family protein	NA	NA	NA	NA
WP_011272654.1\|1376743_1377943_-	cysteine desulfurase	Q2XUY6	environmental_halophage	2.0e-61	32.0
WP_032827530.1\|1377944_1378427_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	3.8e-32	48.4
WP_005650310.1\|1378541_1378964_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_005659557.1\|1378982_1379678_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA

DBSCAN-SWA_7

1444274 : 1453008

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074031221.1\|1444274_1445279_-	phosphate ABC transporter substrate-binding protein PstS	A0A222YW41	Synechococcus_phage	1.2e-51	40.5
WP_005650594.1\|1445799_1446288_+	non-heme ferritin	NA	NA	NA	NA
WP_005650592.1\|1446307_1446805_+	non-heme ferritin	NA	NA	NA	NA
WP_044345679.1\|1447037_1447802_+	glycosyltransferase	M1HQG0	Paramecium_bursaria_Chlorella_virus	6.8e-15	29.6
WP_014550748.1\|1447907_1449464_+	anthranilate synthase component I	A0A0B5J984	Pandoravirus	1.8e-22	33.2
WP_005688458.1\|1449476_1450058_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	5.9e-35	39.9
WP_005662273.1\|1450106_1450493_+	tautomerase family protein	NA	NA	NA	NA
WP_105905280.1\|1450545_1451547_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	6.7e-47	35.3
WP_042599504.1\|1451577_1453008_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	2.1e-33	38.3

DBSCAN-SWA_8

1464332 : 1494978

Haemophilus_phage(22.58%)

integrase,terminase,capsid

attL 1487087:1487103|attR 1501183:1501199

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005650554.1\|1464332_1464509_-	DUF2213 domain-containing protein	Q7Y5U2	Haemophilus_phage	8.5e-22	93.1
WP_075913359.1\|1464649_1465960_-\|capsid	minor capsid protein	Q7Y5U5	Haemophilus_phage	5.3e-108	78.3
WP_011272621.1\|1465859_1467194_-	DUF1073 domain-containing protein	Q7Y5U6	Haemophilus_phage	2.1e-213	84.2
WP_011272620.1\|1467195_1468539_-\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	2.8e-125	54.4
WP_011272619.1\|1468525_1469038_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	1.0e-19	39.2
WP_011272618.1\|1469082_1469361_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	6.5e-16	66.2
WP_105897882.1\|1469362_1469644_-	hypothetical protein	Q776X1	Haemophilus_phage	1.4e-29	71.1
WP_105897883.1\|1469555_1469891_-	DUF2570 family protein	Q7Y5U9	Haemophilus_phage	1.5e-27	67.7
WP_042594014.1\|1469863_1470406_-	lysozyme	A0A0M3LPQ1	Mannheimia_phage	3.1e-46	52.0
WP_005688862.1\|1470386_1470638_-	hypothetical protein	NA	NA	NA	NA
WP_005688860.1\|1470808_1470970_-	hypothetical protein	NA	NA	NA	NA
WP_005688858.1\|1471097_1471610_-	hypothetical protein	NA	NA	NA	NA
WP_005688856.1\|1472019_1472841_-	NYN domain-containing protein	A0A0R6PGY5	Moraxella_phage	3.1e-34	40.9
WP_042594013.1\|1473042_1473561_-	hypothetical protein	NA	NA	NA	NA
WP_042594012.1\|1473600_1473966_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_042594011.1\|1473967_1474555_-	recombination protein NinG	A0A2I7RAC0	Vibrio_phage	8.3e-37	48.0
WP_105905511.1\|1474647_1475064_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	2.1e-63	84.7
WP_005633909.1\|1475100_1475325_-	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
WP_105905520.1\|1475321_1475945_-	replication P	D0UIL4	Aggregatibacter_phage	6.9e-34	45.5
WP_042593361.1\|1476738_1476981_-	hypothetical protein	M4NJW2	Sulfitobacter_phage	4.0e-06	41.4
WP_105905513.1\|1477582_1477810_-	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	7.9e-12	50.7
WP_105905514.1\|1477946_1478852_+	helix-turn-helix transcriptional regulator	B6SCU0	Bacteriophage	1.4e-38	40.8
WP_105905515.1\|1478867_1479962_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	4.0e-61	37.1
WP_105905516.1\|1479961_1480621_+	hypothetical protein	NA	NA	NA	NA
WP_105905517.1\|1480577_1481609_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	2.8e-128	66.4
WP_065245325.1\|1481996_1482167_-	DUF1508 domain-containing protein	NA	NA	NA	NA
WP_105905518.1\|1482181_1482403_+	hypothetical protein	NA	NA	NA	NA
WP_042593356.1\|1483072_1483903_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	3.4e-76	52.2
WP_105905519.1\|1484222_1484837_+	Bro-N domain-containing protein	Q7Y5X0	Haemophilus_phage	1.9e-36	60.6
WP_005651093.1\|1484927_1485665_+	site-specific DNA-methyltransferase	A0A0E3U2R2	Fusobacterium_phage	5.2e-113	77.5
WP_011272496.1\|1485678_1486023_+	hypothetical protein	NA	NA	NA	NA
WP_011272495.1\|1486019_1486313_+	hypothetical protein	NA	NA	NA	NA
WP_105905549.1\|1486325_1487246_+	recombinase RecT	A0A0M3LNU3	Mannheimia_phage	6.3e-116	71.5
1487087:1487103	attL	NA	NA	NA	NA
WP_105905548.1\|1487220_1487871_+	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	1.0e-83	70.6
WP_042602683.1\|1487870_1488305_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.3e-18	36.2
WP_111722577.1\|1488366_1489146_+	hypothetical protein	A0A2H4FRY7	Salmonella_phage	1.4e-36	59.6
WP_038440649.1\|1489270_1490167_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	8.4e-57	43.7
WP_005668254.1\|1490163_1490409_+	hypothetical protein	NA	NA	NA	NA
WP_042593417.1\|1490405_1490765_+	hypothetical protein	NA	NA	NA	NA
WP_042599526.1\|1490761_1491550_+	DNA methyltransferase	U4KJA1	Streptococcus_phage	4.0e-79	56.7
WP_005668260.1\|1491560_1492208_+	hypothetical protein	A0A0M3LNU4	Mannheimia_phage	1.0e-08	40.0
WP_042593416.1\|1492211_1492628_+	hypothetical protein	W0B4E9	Acinetobacter_phage	3.5e-05	39.2
WP_042599527.1\|1492707_1493196_+	hypothetical protein	NA	NA	NA	NA
WP_042593414.1\|1493185_1493509_+	hypothetical protein	NA	NA	NA	NA
WP_042593413.1\|1493501_1493774_+	hypothetical protein	NA	NA	NA	NA
WP_005650488.1\|1493815_1494019_+	hypothetical protein	NA	NA	NA	NA
WP_105182752.1\|1494090_1494978_-\|integrase	site-specific integrase	A0A0M3LQN1	Mannheimia_phage	2.7e-84	54.2
1501183:1501199	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1728686 : 1737195

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011272434.1\|1728686_1729370_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.3e-54	50.7
WP_011272433.1\|1729362_1729788_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	2.3e-20	42.0
WP_005686506.1\|1729788_1730424_+	7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	8.7e-16	30.3
WP_042594456.1\|1731033_1733214_+	DNA helicase II	A7KV33	Bacillus_phage	5.1e-116	37.6
WP_005647473.1\|1733303_1734305_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005653671.1\|1734319_1735207_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005694258.1\|1735216_1736209_+	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-14	30.8
WP_038441344.1\|1736211_1737195_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-20	33.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS483486

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection