CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LS398550	Orientia tsutsugamushi isolate Kato chromosome I	3 crisprs	RT,DEDDh	2	1	16	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LS398550_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS398550_1

29076-29170

Orphan

Consensus_repeat	Method
CTTCAGCTTTACCTTCGGCTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS398550_1

>merge|NZ_LS398550|1|29076-29170|CRISPRCasFinder
CTTCAGCTTTACCTTCGGCTTTACCTTCGGCTTTACCTTCGGCTTTACCTTCAGCTTTACCGAGCTTTATGCCTTCAGCTTTACCTTCAGCTTTA

>NZ_LS398550|1|1|29076-29170|CRISPRCasFinder
CTTCAGCTTTACCTTCGGCTTTA	CCTTCGGCTTTACCTTCGGCTTTACCTTCAGCTTTACCGAGCTTTATGC
CTTCAGCTTTACCTTCAGCTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS398550.1\|WP_109455582.1\|28493_28892_+\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_LS398550.1\|WP_108839644.1\|34167_34743_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_LS398550.1\|WP_109455584.1\|30764_32477_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371642
NZ_LS398550.1\|WP_109455586.1\|34777_35422_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LS398550.1\|WP_045915741.1\|9475_11275_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398550.1\|WP_109455585.1\|32485_33934_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NZ_LS398550.1\|WP_109455581.1\|26511_28227_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_LS398550.1\|WP_064612560.1\|35469_36018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398550.1\|WP_011944233.1\|5598_6588_+\|P-type-DNA-transfer-ATPase-VirB11	unknown	unknown	gnl\|CDD\|184381
NZ_LS398550.1\|WP_109455579.1\|20514_21522_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NZ_LS398550.1\|WP_109455589.1\|39514_40051_-\|cyclic-di-AMP-receptor	unknown	unknown	gnl\|CDD\|283747
NZ_LS398550.1\|WP_109455588.1\|38912_39488_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_LS398550.1\|WP_109455587.1\|37954_38812_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LS398550.1\|WP_109455578.1\|18750_20505_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|313610
NZ_LS398550.1\|WP_045913641.1\|36021_36831_-\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|273146
NZ_LS398550.1\|WP_012462029.1\|6587_8360_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|237549
NZ_LS398550.1\|WP_109455576.1\|12084_13224_+\|reverse-transcriptase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_LS398550.1\|WP_109455577.1\|17599_18745_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_LS398550.1\|WP_109455580.1\|21543_22677_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|274285
NZ_LS398550.1\|WP_045918899.1\|37204_37933_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_LS398550.1\|WP_109455582.1\|28493_28892_+\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	1.54743e-18
NZ_LS398550.1\|WP_108839644.1\|34167_34743_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	1.28273e-32
NZ_LS398550.1\|WP_109455584.1\|30764_32477_+\|hypothetical-protein	gnl\|CDD\|371642	pfam11638, DnaA_N, DnaA N-terminal domain. This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.	0.000114411
NZ_LS398550.1\|WP_109455586.1\|34777_35422_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	7.26984e-23
NZ_LS398550.1\|WP_109455576.1\|12084_13224_+\|reverse-transcriptase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	5.88079e-85
NZ_LS398550.1\|WP_109455580.1\|21543_22677_-\|toprim-domain-containing-protein	gnl\|CDD\|274285	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.	5.72346e-13
NZ_LS398550.1\|WP_109455581.1\|26511_28227_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	8.87391e-119
NZ_LS398550.1\|WP_011944233.1\|5598_6588_+\|P-type-DNA-transfer-ATPase-VirB11	gnl\|CDD\|184381	PRK13900, PRK13900, type IV secretion system ATPase VirB11; Provisional.	0
NZ_LS398550.1\|WP_109455579.1\|20514_21522_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.90481e-62
NZ_LS398550.1\|WP_109455589.1\|39514_40051_-\|cyclic-di-AMP-receptor	gnl\|CDD\|283747	pfam06153, CdAMP_rec, Cyclic-di-AMP receptor. CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. Cyclic-di-AMP (c-di-AMP) is a bacterial secondary messenger involved in various processes, including sensing of DNA-integrity, cell wall metabolism and potassium transport. CdAMP_rec has a ferredoxin-like fold and is structurally related to Pii-signal transduction proteins.	0.00838402
NZ_LS398550.1\|WP_109455588.1\|38912_39488_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	4.02896e-38
NZ_LS398550.1\|WP_109455587.1\|37954_38812_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.0792e-13
NZ_LS398550.1\|WP_109455578.1\|18750_20505_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|313610	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.	0
NZ_LS398550.1\|WP_045913641.1\|36021_36831_-\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	8.76724e-52
NZ_LS398550.1\|WP_012462029.1\|6587_8360_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|237549	PRK13897, PRK13897, type IV secretion system component VirD4; Provisional.	0
NZ_LS398550.1\|WP_109455577.1\|17599_18745_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.52282e-21
NZ_LS398550.1\|WP_109455585.1\|32485_33934_+\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NZ_LS398550.1\|WP_045918899.1\|37204_37933_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.34777e-08

>NZ_LS398550.1|WP_109455582.1|28493_28892_+|conjugal-transfer-protein-TraD
MDEVNLKIKERKMRTRRLIEMGGLVAKANLDHLSANTLFGAIVSLKETLTQHPNVQDHWTTIGKDIFDKEQQNKAAVILKIASEPNEDTKRHIRLHGLKWNSFRQEWCGHVKDIEALKNGLLNVQYSIELVV
>NZ_LS398550.1|WP_109455581.1|26511_28227_+|group-II-intron-reverse-transcriptase/maturase
MQNANVTIETKDNFKKIYWHSIDWKEIIQKVNNLRRRIYRASANGNMKLVGNLQRLMLRSRANRLLAIRRVTQINKGRKSPGIDKIVVNTDKERSLLMEKLADNNLSSVKPIKRVYIPKSNGKSRPLGLPTILDRCRQAVVKSALEPYWEAKFEGCSYGFRPGRSAHDAIQRISSIVRPGTTRNWILDADIKGAFDNIDHNFLLKIIGNFPARNWIQAWLKSGVMQDYQIIKTTTGTPQGGLISPLLLNITLHGMGDILNIIYNEYDHLHSKSEYALVRYADDFVICAKSESSCIRAKSIINDWLSIRGLELSKEKTRILHINEGFDFLGFNIRQYNTNSTRRGVALLVKPSKDSIKSFKKRISIEWKKGFSWNIDRIIDNLNSKIFGWCSYFNKVVSKKIFSNLDCWMWIRQARFVCRKHPKKSWKWLKKKYWGRIKGRNDNWVFMNKDLYLWKLQWTTIKRHILVKGKSSPDNSKLREYWHKRQADSSKYLFKSRQILWRRQKGKCLVCFDLIDNGENVHVHHITPIRCGGTDHINNLCLLHENCHRQVHSNRGQLIAAVCKLLEPYAE
>NZ_LS398550.1|WP_109455580.1|21543_22677_-|toprim-domain-containing-protein
MTVIAEGAETALSLQQSGIKGNIIASAGIANLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQSCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIEKQNDITNVKELYNKSSSLYYFKQEEEAKVETIVVNKYLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVKNDKDEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIQQAGVEGKILCAIEAENLQNYNPSPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKHYAEYDTAFFI
>NZ_LS398550.1|WP_109455579.1|20514_21522_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MTKQLKHDSLAKTIMSDPVAAQEFLEYYLPTDFKSLIDLSQIKVEQESYIEESLKKKYSDIVYRIATKKHGNAFIYILIEAQSTVDYWTALRLWRYTLLLCERHKKEKTKLPLVYNLVIYNGKEVYNAPRNLWDLFTDSMIAKQLMTSDYQLVDLQSMSNDEIVRKKHIGMLEYMLKHIHQRDMLKLWEEFLIKFKHVLILDKEKGYIYLRSFLWYTDTKLLESQQPELEQVLAKYLSEEEKSNIMRTIAAKYIDEGIEIGETKGRAEGRAEGRAEGRAEGRAEGRAEGRAEGRAEAAQELAMNLLKAGFSVEFISENTGLSKEEVINLKNNIEY
>NZ_LS398550.1|WP_109455578.1|18750_20505_+|type-IV-secretion-system-DNA-binding-domain-containing-protein
MNFQNQGNFTRGSQLFAHKLRMFGQGSTNVFIIGLGLSIFWIICRLYQKVFLSSLYYFAIERYVQLKLAIGEHFYDIDQIGIKFYSLRFKKWMHLNAQDFLHEFYTGQHGFKIQQLWEFLINSSLLEGLIVFAIGVIISIVFFTAQGKNTIIKAKIRGADFVECKCLSKMLKSAKKASKICFGGLPLVKNSERLHILITGTTGTGKTNMLNELLPQIRLYKDRAIIVDTTGAFTDRFFDPKCDRLLNPFEKNSEQWLPWNDCFEAADFHDIASSFSNYTPKLDDFFAKNAELVLSEALKLYKDDKDIIKLIHTIIYSDNRQFAKAFRSTAVSGIISESALETSAGIQSTLGKNITSLQYLKPGGSFSIKEWFSNSNETSWLFITANPNQRATLCPLISAWISIAIKALMCRNPNHDNKNMWFILDELPALQKVSSLPVALAESRKYGGCFVAGLQNIHQLEAIYGAAECASMLDLFNSKFIFRVSDQVTAYKSALTLGEQEIIETQENLSYGSNTMRDGVNMNNVERKKILVMPSEIMNLPDLTCYVKLAGNFPITKLTMQLQNLNTAFVWGYKLLKKLKLVEY
>NZ_LS398550.1|WP_109455577.1|17599_18745_+|tetratricopeptide-repeat-protein
MKNIYKLAIIIILQVMLLNRAIAIEENKLIQQNSIKDENVLAREYFNIGSSFLRLKKYQAAIENFDIAIKYNPNYPEAYLEKGIALNDSGKPLEAIKNYDIAIKYNPHFAEAYNNKGASYGKLGKDKEAIRFYDLAIKYKPNFAKAYNNKGASLSRLGQYEDATENFDIAIRYNSSYPEAYYNKGIALLNLGDIHGAIKNYDIAIKYRPNYSEAYHNKGLTLAILGQFQNAIEHFDLAIRYDPNDSKAYCNKGYVLNLLERYSEAMENSNLAIKIDPNCSDAYYNKGIIFAKLGKHKEAIENFDLAIKYKPNFAENYLEKGISLVNLGQYSRAKDNFLLATKYNPNIIVGYETALKRLIELEKFTVAKEFEQKLQILKKYS
>NZ_LS398550.1|WP_109455576.1|12084_13224_+|reverse-transcriptase
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSNKAIGIDGITKEDYGKKLKANLLSLLTRIRKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESAVSKILNSVFEPIFLKYSYGFRPKLNVHDALRELNRLTYNFNKGAIVEIDITKCFNAIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENGTIVTNKEGCRQGSIVSPILANVFLHYVIDSWFAKISEENLIGQTGMVRYCNDMVFVFEREADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDCFTEKLKGLRKYLRSQLNKQDKTQTLSQVIRVIR
>NZ_LS398550.1|WP_045915741.1|9475_11275_+|hypothetical-protein
MLKDRITESILATKLFKTLIASNQSKFTEEDILLLSKNLIRTLSGISEKNSVASIEEYQACFSDLDDRDLSKVLKVLQDIFAGEEHKEFRKIIELPLLDRLTTQFKIERIQELNNQQAGNFNKNLSNNNIEELLRDKNIAKQEEFSPKGPKQAGISAGYIATEKSSGNTFLLKQFYKSNTSAKKSSTSILCCIKSQTSDQYQSDMIDAIQELLASQMYQLLLYDRAPKEALTMPDKLNSKFLYIRSKFLKNAVTLSEFSGLKGVTCVDPRASCLKQLDGFEKVIAACHMLGDIDYHGANLMVLDGKTVAKIDHGRSFMQYHKDFASMVSTTYKSFKRESKKYDLAIQCGNLRFDINKYNTALKKMIGQLNEDQIDAIIEQKVAELRKLGFNPNDLIVRAGFESGIVNSTVISDYKDLEEFYKKNLKKNLQNMKEIAKATNIVAKFSNVSQEFKEGGWLKAFATSTIQDPVLYAHNTNIAINKKRALEWAIANNYDIKHYDSDIYYDWQQEWLKSNHDKLQKIKQCVLEQEKKIVEFNAADCTIESENHQKSLSNKIDFLSSSKEVLLKSEVSHKFDINQKKEPAVFKLKPKTSQGRSMV
>NZ_LS398550.1|WP_012462029.1|6587_8360_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MNENAFLTKIRNLVIKIMVHCIGVILVVFIIKFFILLFTVKHQNLIDVLLTFNVSIVYQYLIWIINSWSLIDFSSYDYLKLKLVFSFIVPPVITIVLYIKNFEKIKSWQPYKLKEKVYGDARWGDQDDIKRAGLRSKHGTLLGVDKGGYYVADGFQHALLFAPTGSGKGVGFVIPNLLFWEHSVIVHDIKLENYELTSGWRAQQGQNVYVWEPANPDGITHCYNPIDWVSSKPGQMVDDVQKIANLIMPEKDFWNNEARSLFLGVVLYLIADNTKAKTFGEVVRTMRSNDVVYNLAVVLDTMGAVIHPVAYMNIAAFLQKADKERSGVISTMNSGLELWANPLIDAATASSDFNILEIKRKKTTIYVGLTPDNINRLQKLMQVFYQQSTEFLSRKIPDVKEEPYGVMFLLDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTQQLKGTYEEAGMNSFLSNSTYRITFAANNYETANLISQLCGNKTVKQASHSQPRFFDLNPATRTMNISEVQRALLLPQEVILLPRDEQIILIESFPPIRSKKVKYYEDKFFTSRLLPPSFVPTQTPYVPPDYNATADDSNNVDNNQK
>NZ_LS398550.1|WP_011944233.1|5598_6588_+|P-type-DNA-transfer-ATPase-VirB11
MKNNIALETYLTPFKLIFDEAGVNEVMINRPGEVWVEKKGSYRQELMKDLDFSHLAALARLIAQSTEQVISEEKPLLSATLPNGYRVQVVFPPACEVGSIGIAIRKVSSLNMTLEDYNKTGAFDYTAIDEVIDENDKILSEYLINKQFKNFLQHAIKSKKNIIISGGTSSGKTTFTNSALLEVPHTERLITVEDAREISIPNHPNRLHLLASKGNQGRAKVTTQDLIEACLRLRPDRIIIGELRGAEAFSFLRAINTGHPGSISTLHADTTAMALEQLKLMVMQAGLGMPPDEIKNYINAVIDIVVQLKRGDRGIRYISEIYFKKMRKK
>NZ_LS398550.1|WP_109455584.1|30764_32477_+|hypothetical-protein
MVQCMRRIFSTNVCKSITNNSVNNTIIFYKFVGNFPPEEWKWLTDADGKALGKTEKQLLAVIVRQLQVYNNKNIEEIQENYNFFTELLGVGQPRVRQCLSKLQKAGFIKYENRTITKGKYKLNHILCIKLVRNFQQVSNFEKEKTVTQTEKIFPLYPKKISGEHEKNFGSIYRYNNKKIINDRSRFIEDKLVENDQNKNEDQQQNLKFKYTESDDFIEIELVGNEKEDQHQQQNLNFYELSDFSNKKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLKLSNKYPNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDVGRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQILTSCDFGAAVKNKYYIKLLKNITLSDHIKFKILQEVRAVHGNDIEQLQVIPFDESKQVTNSTTEYQKTTVLQQQISDEDYLSELSKELGSNSTWYKVRKSLIKSYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSYIRENYLKDLESSFKAQGFSFELVKFSNFNKI
>NZ_LS398550.1|WP_109455585.1|32485_33934_+|replicative-DNA-helicase
MEKDLAKIAPSNIQAEQMILGAILINNRALYNINEFLLPEHFYEPLHGKIYKSINLIISKGISATVISLKNMLGNELAFEEIGGVDYLAKLTTLALSIVNVNEYGKIVYDLALRRYLIEIGEKIVTNAYSSTLADLAITQIETAESQLYDLGSRGTLSKGFTKLQTSIEESWTSISSAIKNKNSINGISSGLLDLDSKLGGFKNSDLIILAGRPSMGKTALGVNLAINACKYFLSSSTQQNSKVSNITPSVGFFSLEMSSQQISTRILSIESEINSSALFNGKIDEQDVDKLKTVQNEIQKWNFFIDDAPAISISAIRSRARRLKRTHNLAILFVDYLQLIKIDNRRSQYNRVQEISEITQSLKALAKDLNISIIALSQLSRAVEQRSDKKPLLSDLRESGSIEQDADIVMLIYRDEYYLSRSEPNPGTPEYTEWVTKQNKCYNTAEIIVAKHRNGPVGTVKLHYNSRYSKFGNIVKNYQQG
>NZ_LS398550.1|WP_108839644.1|34167_34743_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MIDFYSESLINKLFRTNIRFNAKIDLDRVEKAILYAKKYHGQQKRDTGELYYTHPLEVAHMVSDHSFETNTIITAILHDTLEDTKLTKERIRYEFGANIAEQVSDLTRVRDNKKISAMEMIQILRNQNKTELLLIKLFDRFHNITTIFIKPPHKRQEIIFETQQEFIALAEYLKLPEIGERLSEYCKLHAS
>NZ_LS398550.1|WP_109455586.1|34777_35422_+|ankyrin-repeat-domain-containing-protein
MILKSKTKYTLHSAIQDGDIKKVKQLINKDITLVNSKYKNGTTALSVALKYKNLPIAEILLSNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPVYCNDHIALLLKYNADVNIENNQGNTPLSDAVECRCIEPLAIMLKHNSTGINKKYDEGETLLHIAVRNKIIDIIQLLIDYGADIDAKDDNGMTTIDYAAKSGNTDVFNFLTEQWVPWY
>NZ_LS398550.1|WP_064612560.1|35469_36018_+|hypothetical-protein
MNVLKSLLQPCYAVILAFVVLSSPSICTANNNVNFNAFKDSIDTSQFYIKFSTGIATNYDTLEAGIGYRLDRHRMDVRLGFMCHHNCRDNFVQGNYYYNIIEGNKASIFVTGGLVSAFNSDSGTGIDLGVGTTINLSRDTYLDGVGTTINLSRDTYLDIECSTIANYRPLPIHIRFGLRVHI
>NZ_LS398550.1|WP_045913641.1|36021_36831_-|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase
MSVAVANKSKPFLHWIGSKRRIVNKLIEHLPQGPHYNYYEPFLGGGALFFQVRHLFKQCFLSDINLDLITSYNAVKNNPNEVNRLLSLYHKHHSKDYYYKVKNKYSNNPNEITAKFIYLNKYSFRGIYRVYKNGQSAQTFSGECYIKLHIASRINQCSSLLHGVSIYATDFSFIEPQQNDFVYFDPPYHKSGERFYTRLPFDEKDQIRLRDFVQELTNKGVKIMISNNNTAFIRDLYKDFNINTVTVVYSINEQRNPVNELIITNYKTC
>NZ_LS398550.1|WP_045918899.1|37204_37933_+|HAMP-domain-containing-histidine-kinase
MPIQDEGQNKINKLTEKLSTEGINSTTIKQIDAELQKLYFQLEESGQVSIKLIDWIQYFRRIVNDYNKKKINIIASLNGIIFLFRQYIASTNIRIETFNIEPLINNTVIRMRKNFENENINLNVQNDIKPILIGDSFRIKAVISQLIGSAVINSSKNSKIIVNVNQNSEILQFTVQNIGLSTSKEKLERINAELENTNLVMYQELGEGLAFIKHLTHQMKGNLRVKERNNYVTFSFDVPTIV
>NZ_LS398550.1|WP_109455587.1|37954_38812_+|HAMP-domain-containing-histidine-kinase
MKEKKKTINKWMVQIPPIPITLMNGESENIDEYMEIITKLRKAKYQVEVAESLKEYCTDLIQEIKYRFNIATSEIVRLASEIMLNDSKNKDKLKTILNRSANLQEYCNDVVYTLRSEIEHENLCLKKFSIQKLVKNAVRRLEDIAKEKDIKINYNFQYKMKDIVIGNSDHLQAILSQLIGSVIRFNHSCQVIITVHLFTVKNYIKSDNILQFRIHDTGSGISKEKLGNIKAKLAHFDLVRDYPQMLESGLWFVNYLVNQLNGEMEIESEKDKFTTITCNIPVQLF
>NZ_LS398550.1|WP_109455588.1|38912_39488_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MIDFYSESLLNKLFETNVRFDTKIDLDKVEKAIFYAQKYHGQQKRDTGELYYTHPLEVAYMVADYSFETDTIITAILHDTIEDTTLTKEKIVKVFGRKIAEQVSDLTRIKDNKKISSREMIQTLYNRNKTELLLIKLFDRFHNIQTVSIKPYEKRQEIILETQQEFIPLAKYLNLPKIGELLSEYCKLNAS
>NZ_LS398550.1|WP_109455589.1|39514_40051_-|cyclic-di-AMP-receptor
MYRNNLYQGLASNLISTDIVQLATNFIFKKEGNNTLILIGWNNSKYNDIIQKVQSNCNREKEAVSYISSSIKQYAVVEHYEYAKKTYNILYAVEELNHNQLIPIVVKYDNESILNSSKKSLTDKELTIVCNDLSERPAELNTFTDDDRIAYYEDNLRIYTPDQFKDCCMGDISNCTSE

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Crispr_ID: NZ_LS398550_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS398550_2

497000-497094

Orphan

Consensus_repeat	Method
CTTCAGCTTTACCTTCGGCTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS398550_2

>merge|NZ_LS398550|2|497000-497094|CRISPRCasFinder
CTTCAGCTTTACCTTCGGCTTTACCTTCGGCTTTACCTTCAGCTTTACCTTCAGCTTTACCGAGCTTTATGCCTTCAGCTTTACCTTCAGCTTTA

>NZ_LS398550|2|2|497000-497094|CRISPRCasFinder
CTTCAGCTTTACCTTCGGCTTTA	CCTTCGGCTTTACCTTCAGCTTTACCTTCAGCTTTACCGAGCTTTATGC
CTTCAGCTTTACCTTCAGCTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS398550.1\|WP_045916315.1\|508130_509948_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236378
NZ_LS398550.1\|WP_109455700.1\|504754_505261_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398550.1\|WP_045916098.1\|484904_485528_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NZ_LS398550.1\|WP_080943620.1\|513574_514165_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213218
NZ_LS398550.1\|WP_045916303.1\|501192_503172_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LS398550.1\|WP_045916099.1\|483986_484778_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_LS398550.1\|WP_109455697.1\|497952_498531_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_LS398550.1\|WP_109455695.1\|496355_496811_+\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_LS398550.1\|WP_045916105.1\|483080_483869_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NZ_LS398550.1\|WP_109234480.1\|505308_505953_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LS398550.1\|WP_109456073.1\|486149_486317_+\|TraU-family-protein	unknown	unknown	gnl\|CDD\|377717
NZ_LS398550.1\|WP_045916267.1\|505987_506563_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_LS398550.1\|WP_045916314.1\|509970_510963_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|236591
NZ_LS398550.1\|WP_109456074.1\|490433_491528_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|274285
NZ_LS398550.1\|WP_109455694.1\|489398_490382_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NZ_LS398550.1\|WP_045916101.1\|480208_481972_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_LS398550.1\|WP_012461952.1\|512131_512359_+\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|379139
NZ_LS398550.1\|WP_109455693.1\|487853_489389_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|313610
NZ_LS398550.1\|WP_045916100.1\|482296_483052_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NZ_LS398550.1\|WP_162563033.1\|512528_513587_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NZ_LS398550.1\|WP_045916315.1\|508130_509948_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236378	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_LS398550.1\|WP_045916098.1\|484904_485528_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	4.85024e-94
NZ_LS398550.1\|WP_080943620.1\|513574_514165_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213218	cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C. MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.22914e-88
NZ_LS398550.1\|WP_045916303.1\|501192_503172_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.84721e-06
NZ_LS398550.1\|WP_045916099.1\|483986_484778_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	6.65021e-63
NZ_LS398550.1\|WP_109455697.1\|497952_498531_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	1.55301e-37
NZ_LS398550.1\|WP_109455695.1\|496355_496811_+\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	1.14544e-18
NZ_LS398550.1\|WP_045916105.1\|483080_483869_-\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	1.55881e-70
NZ_LS398550.1\|WP_109234480.1\|505308_505953_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	9.5963e-23
NZ_LS398550.1\|WP_109456073.1\|486149_486317_+\|TraU-family-protein	gnl\|CDD\|377717	pfam06834, TraU, TraU protein. This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.	2.8842e-13
NZ_LS398550.1\|WP_045916267.1\|505987_506563_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	5.03136e-34
NZ_LS398550.1\|WP_045916314.1\|509970_510963_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|236591	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	2.48274e-141
NZ_LS398550.1\|WP_109456074.1\|490433_491528_-\|toprim-domain-containing-protein	gnl\|CDD\|274285	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.	2.76593e-12
NZ_LS398550.1\|WP_109455694.1\|489398_490382_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	9.01631e-63
NZ_LS398550.1\|WP_045916101.1\|480208_481972_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LS398550.1\|WP_012461952.1\|512131_512359_+\|DUF4102-domain-containing-protein	gnl\|CDD\|379139	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain. This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.	0.00109052
NZ_LS398550.1\|WP_109455693.1\|487853_489389_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|313610	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.	0
NZ_LS398550.1\|WP_045916100.1\|482296_483052_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	2.30092e-111
NZ_LS398550.1\|WP_162563033.1\|512528_513587_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.60457e-24

>NZ_LS398550.1|WP_109455695.1|496355_496811_+|conjugal-transfer-protein-TraD
MANLMQQKITLQQKKARLIMDEVNLKIKERKMRTRRLIEMGGLVAKANLDHLSANTLFGAIVSLKETLTQHPNVQDHWTTIGKDIFDKEQQNKAAVILKFSSEPDETTKRYIRLHGLKWNSFRQEWCGHVKYIESLKNGLLNVQYSIELVV
>NZ_LS398550.1|WP_109456074.1|490433_491528_-|toprim-domain-containing-protein
MAEGAETALSLQQSGIKGNIIASAGISNLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKRLEMKGAITCIVKPPENGDFNNLLQSCGEQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYYFKQKEEAKVETIVVNKYLENHTGIYSSKIFNNPNLRANMVFDEETQKSWPALTIFVKNDKDEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIQQAGVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH
>NZ_LS398550.1|WP_109455694.1|489398_490382_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MTKQLKHDSLAKTIMSDPVAAQEFLEYYLPTDFKSLIDLSQIKVEQESYIEESLKKKYSDIVYRVATKKHGNAFIYILIEAQSTVDYWTALRLWRYTLLLCERHKKEKTKLPLVYNLVIYNGKEVYNAPRNLWDLFTDSMIAKQLMTSDYQLVDLQSMSNDEIVRKKHIGMLEYMLKHIHQRDMLKLWEEFLIKFKHVLILDKEKGYVYLRSFLWYTDTKLLESQQPELEQVLAKYLSEEEKGNIMRTIAAKYIDEGIEIGETKGIAKGIAKGIEIGETKGRAEGRAEAARGLARNLLKAGFSVEFISENTGLSKEEVINLKNNIEY
>NZ_LS398550.1|WP_109455693.1|487853_489389_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MVTIYQIGIKFYSLRFKKWMHLNAQDFLHEFYTGQHGFKIQQLWEFLINSALLEGLIVFAIGVIISIVFFTAQGKNTIIKAKIRGADFVEYKCLSKMLKSAKKASKICFEGLPLVKNSERLHILITGTTGTGKTNMLNELLPQIRLHKDRAIIVDTTGAFTDRFFDHKCDKLLNPFEKNSEQWLPWNDCFEAADFHDIASSFSNYTPKLDDFFAKNAELVLSEALKLYKDDKDIIKLIHTIIYSDNRQFAKAFRNTAVSGIISESALETSAGIQSTLGKNITSLQYLKPGGSFSIKEWFSNSNETGWLFITANPSQRATLCPLISAWISIAIKALMCRNPNHDNKNMWFILDELPALQKVSFLPVALAESRKYGGCFVAGLQNIHQLEAIYGAAECASMLDLFNSKFIFRVSDQVTAYKSALTLGEQEIIETQENLSYGSNTMRDGVNMNNVERKKILVMPSEIMNLPDLTCYVKLAGNFPITKLTMQLQNLNTAFVWGYKLLKKLKLVEY
>NZ_LS398550.1|WP_109456073.1|486149_486317_+|TraU-family-protein
MCLCPKPGIPIPVPGIQVGFWEPVRLVDVTKSPMCMVSLGGLSLEVLLKKAGLIA
>NZ_LS398550.1|WP_045916098.1|484904_485528_+|30S-ribosomal-protein-S4
MTKVIKSKYKVSRRLGTSVWGHEKDAINNKNYKPGQQGNSSSVSKPSDYSKHLVAKQRLKSHYGRIPEKQFRNTFQIARKKSGNTAENLVGLLERRLDAVVYRLNIAPTIFAARQLVSHKHIKVNGKKINIASYRVKSGDSIELSEQAKQIPIVIGAISKKARRIPEYLAFDDEKFIGNFIRMPSSISEVPYPFDPQINLVVEFYSA
>NZ_LS398550.1|WP_045916099.1|483986_484778_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MKLKKLHRIYSSIPLSKAGTIKLSREQTNYIINVLRCKNNDQIRVFNELNGEYLAIIHHTNNKQVLLQIINQTKVVEKEVDKNNSPLVLAQCIIKPERMARVIDMATQAGITNIVPIISEYSQHLKFNIEKYNKIIIESCRQSERLTMPILSSPVTLSHFLSQSNSGCILCANEHERIQQIHHIPASILSKASILIGPEGGFSEQDQSILRQAGGLIKSISIGRNVLRSETAAIYLLSQLQLLKTMHVHKGNYEDININKVFN
>NZ_LS398550.1|WP_045916105.1|483080_483869_-|ABC-transporter-permease
MNIILALKVIGQRTIKIFYNIILFQNFLFASIKGIFTLPYYFNITIQAIINIGFYSLPIVAATSLCSGAVLALQTYEGVVRSSAIHAIPMIIVTSITRELGPVIVGLIVAGRIGASIVAEIGTMRVTEQIDALFTLATDPIKYLVTPRLVATTLSLPFLVLASDVIGVFGGYLVSVYRLNFNSYEYIQSTIHHLTSTDVISGLIKAIVFGIIIGITSCFHGYYSDKGAKGVGIATTYGVVHSSILILLSNYIMTELLLSQYI
>NZ_LS398550.1|WP_045916100.1|482296_483052_-|ATP-binding-cassette-domain-containing-protein
MSIIIKNLCKAFKSKIVLNKINLELKSKQSIAILGRSGSGKSVLIKTIIGLIKPDAGEIIIDGQDITKLSLSEKFKLMPSCGFLFQGSALFDSLSVEDNITFYAQRLYKLSKSEKRQLAIEKLKLVELSEDIINLYPFQLSGGMQKRVSFARTICTNPKIIFLDEPTTGLDPIMVNIINNLIIKIQQTLESTTIIITHDINSAYKIANNAAMLYQGQIIWHGKTQDLKNCNNEFVQQFIHGSTIGPIKYDS
>NZ_LS398550.1|WP_045916101.1|480208_481972_+|single-stranded-DNA-specific-exonuclease-RecJ
MNTVNEQSVLGNYWNKTEFDEYIIETIRQKHGVSDFLAKLLYAQNIDLEQISYFLTPTIKEALPDPFHLLDMDKAVNRVIHAINQQEHICIFGDYDVDGATSSALLKNYFCELGIEPIIYIPERLTEGYGPSVSAIKKLKSAGISLIITVDCGTSAYEALAEAKAQHIDVIVIDHHLSVEQLPDAVAIINPNRLDETSKYNYLAAVGVSFLFLVALRSALRKLNYFADKSEPSLVKYLDLVALGTVCDVMALIGLNRAFVTKGLEIMAQHQNVGIKALGYLSEAEFSSDCYYLGFVLGPRINAGGRIGKSDLGSKLLSTKCQIEAYNIAYELENYNSERKLIEKVMLEEAVTIAREQADNNVIVAANHKWHPGVIGIIASRLKDLFHKPIVVISLDDTLGRASCRSIKGIDIGSKIAEAKLKGLLITGGGHAMAAGFTIKRDLIGDLKNFLNQELALDMKNLTGHNIRNYAIDLSIASLNINTVHEIQKLAPFGNGNPEPIFKLTNIKLKYASQLSNKHVHCVLSEWENINAVKTTKAIAFNPRTQLFDALLSTYTKPIDLIGNIKANRWRGREEIQFVIMDLLINR
>NZ_LS398550.1|WP_109455697.1|497952_498531_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MIDFYSESLLNKLFETNVRFNTEIDLDKVEKAIFYAQKYHGQQKRDTGELYYTHPLEVAYMVSDYSFETDTIITAILHDTIEDTTLTKEKIGQEFGHNIAEQVSDLTRIKDNKKISSREMIQTFYRQNKTELLLIKLFDRFHNIQTVSIKPYEKRQEIILETQQEFIPLAEYLKLQEIAIELNKYCELYTTK
>NZ_LS398550.1|WP_045916303.1|501192_503172_+|ankyrin-repeat-domain-containing-protein
MNNIPDKIKTQAFQYASKGNIDALLQLIITYPDLMTARSDRTGNTLLISACDYVQKEMMEFLIANGSDLDAKDHNNDDYLSALHFALLKLGDKDVARTIATLHNFKPKYTCESTALITAVTNKALTYAQYIIDTSKQNKNEIVKNIVQAIISVPGPTSIEKNNIISIVEKYSDITNKKLAFELTEMVFQEKLREVSVGSDTTFHCPNLLKENPFGNFGYKIFNTIDVMFIKLLYKRWGIDLSPYEKFTNNLRSLKDELLKKGGMCSAVILESNKQEILRIVKTSGIVHNNASKLYFDNENLDDSMNLMLERICYLMNIGNANNDANKEEFKTILGFINEHKPVRYDLSDNFIKVITAECASNIRLQEVLKNNSEIIKLVEDYIPCVTTNLNGLEDEFKKDLSILANEVITILDNNSSLQKELCTKGTLVDTAYFLQTTVLPVDIFLNCISDEAKEQKQLTDYEKELIKSHLNFFHYENTYQFPKFDELNDDNIKDTIQYYKNNLKALLPISMLLEIAHDKNKLAELDNTLNSNYEKTSVHVKKCVNTMSKFREYYNSIKYLDLSTDITKQHFEEKILPELNNQIQCELTDIRLERLNNITALSHKVNKFLNISQMTSVFERYNNGYIQLNEDANSENQLLLELLDGNIDNHTSDFHHMC
>NZ_LS398550.1|WP_109455700.1|504754_505261_-|hypothetical-protein
MNVLKSILQPCYAVILAFVVLSSPSICTANNNVNFNAFKDSIDTSQQFYIKFSTGIATSYDTLEAGIGYRLDRHRMDVRLGFMCHHNCRDNFIQGNYYYNIIEGNKASIFVTGGLVSALACCSGTGIDLGVGTTINLSRDAYLDIECCTIANYKPLPIHIRFGLRVHI
>NZ_LS398550.1|WP_109234480.1|505308_505953_-|ankyrin-repeat-domain-containing-protein
MILKSKTKYTLHSAIQDGDIKKVKQLINKDITLVNSKYKNGTTALSVALKYKNLPIAEILLSNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPTYCNDHIALLLKYNADVNIENNQGNTPLSDAVECRCVEPLAIMLKHNSTGINKKYDEGETLLHIAVRNKIIDIIQLLIDYGADIDAKDDNGMTTIDYAAKSGNADIFNFLTEQWVPWY
>NZ_LS398550.1|WP_045916267.1|505987_506563_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MIDFYSESLINKLFRTNVRFNTKIDLDKVERAIKYAKKYHGQQKRDTGELYYTHPLEVAYMVSDYSFETDTIITAILHDTLEDTKLTKERIRYEFGANIAEQVSDLTRVRDNKKISAMEMIQILRSQNKTELLLIKLFDRFHNITTIFIKPPHKRQEIIFETQQEFIALAKYLKLPEIGERLSEYCKLHAS
>NZ_LS398550.1|WP_045916315.1|508130_509948_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MTSSPKFNIKINNERNKLLSTSSQATLADRYLLKGETFQDLCVRIASYYADNKSHAQRLYDYMSQHWFLPATPILSNGGTNRGLAISCFVNEVEDSLHGIVNTWIENVWLASRGGGIGSYWGNVRSINEKIGENGYSSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPISHPEIEEFIDIRRHTGGDSNRKSLNIHHGIVISDQFMHAVEKNESWNLISPYDNRIINTVKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKLGLKVKTSNLCSEITLPTGRDYTNNIRTAVCCLSSLNLEYFELWQSNEHFIPDIIRFLDNVLEDFINKAPNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKERGACIDAQKCNIQERFSYKTAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNNQVWSSIATHEGSVQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQSQSLNIFLPGNCSKQLLHDIHFDAWKKNIKSLYYCRSTSIQRAEKVSHVVTIDELAKLTDKEQQLSTSNNDDECLACQ
>NZ_LS398550.1|WP_045916314.1|509970_510963_+|ribonucleotide-diphosphate-reductase-subunit-beta
MSLLNARPIYKPFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKYNLTPGEKHLLTQIFRFFTQADIEVNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPETEYQAFMKYKAMKDKYDYMQRFNVDNKEEIATTLAVFGAFTEGVQLFASFAILLNFPRYNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYEACCTIIHFEDAFIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTWLDQILNGVEHTNFFENRVTEYTRSATTGSWDEVFAKIDNNNNQPTV
>NZ_LS398550.1|WP_012461952.1|512131_512359_+|DUF4102-domain-containing-protein
MVVILYFTQIAISKIKPPKEKRDVYRDTEDKGLFLEVLYGATKTLYLGITIKEVYRKIKLGNFPNISVNYARKKR
>NZ_LS398550.1|WP_162563033.1|512528_513587_+|ABC-transporter-ATP-binding-protein
MLVIAFDSNFRPYVIKLLIDGAHNFSIKTYIIWATVYLSSQMISVISAAAFDWLGTLYHTSYRERIAHRYLEQLSKYEYNFFQETLAGTLTAKVTDAFNSIPMVVFITMNMFLQFVFLIIIASIIFIKTSYLLGIIMLVWIAVFVTLTRRHIKNSTDYNKEYAQCRPKIFGFLTDYFTNILNVWFFSEVKNEKNRLRVITQDFIEKSLKFGIFLRKYYFSYGTLVTCYVALIFVILGYLSLQNEITPGDFAVIFMINYKIAEKLSEISYKLIEFTQQLAIATNAITLLNKQPKNDSKTNFIYKEGTIVFSGIDFAYIGTKEKILENFNLTIAAKQKVGLVGGQVQVKVQLLT
>NZ_LS398550.1|WP_080943620.1|513574_514165_+|ATP-binding-cassette-domain-containing-protein
MINLITRLEEPNSSSVLIDNQNIANVSMESLRKHISIVSQDPSLFHRSIFDNIACAKHNSTKVEVIEAAKKAKIDDFIQSLPEKYDTLVGERGLKLSGGQRQRIAIARALLKNAPIFIMDEATSNLDSITEEVIKTTLTEFMQGKTALIVAHRLSTVVNMDRILVLDAGRIIQDGSHECLMQQDGIYAKFWGLHQF

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Crispr_ID: NZ_LS398550_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LS398550_3

1880340-1880418

Orphan

Consensus_repeat	Method
CAAACTTCATTGTAATTGACTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LS398550_3

>merge|NZ_LS398550|3|1880340-1880418|CRISPRCasFinder
CAAACTTCATTGTAATTGACTATAAAATTGCGGCTAATCAAAAGCTAAAACATCTCAAACTTCATTGTAATTGACTATA

>NZ_LS398550|3|3|1880340-1880418|CRISPRCasFinder
CAAACTTCATTGTAATTGACTATA	AAATTGCGGCTAATCAAAAGCTAAAACATCT
CAAACTTCATTGTAATTGACTATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LS398550.1\|WP_045915699.1\|1884491_1885964_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|235835
NZ_LS398550.1\|WP_045915989.1\|1863218_1864889_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LS398550.1\|WP_041621791.1\|1866477_1866750_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_LS398550.1\|WP_012461412.1\|1870794_1871220_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_LS398550.1\|WP_012461410.1\|1867474_1868950_+\|NTP/NDP-exchange-transporter	unknown	unknown	gnl\|CDD\|367401
NZ_LS398550.1\|WP_012461415.1\|1874788_1876132_+\|DUF2748-family-protein	unknown	unknown	gnl\|CDD\|371278
NZ_LS398550.1\|WP_174191439.1\|1890752_1893158_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_LS398550.1\|WP_012461409.1\|1866792_1867308_+\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_LS398550.1\|WP_080943541.1\|1887456_1887858_-\|cation:proton-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236004
NZ_LS398550.1\|WP_045915987.1\|1861226_1862696_+\|trigger-factor	unknown	unknown	gnl\|CDD\|272913
NZ_LS398550.1\|WP_012461416.1\|1876365_1877475_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_LS398550.1\|WP_045915703.1\|1893197_1893722_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LS398550.1\|WP_012461430.1\|1888877_1889207_-\|monovalent-cation/H(+)-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|183669
NZ_LS398550.1\|WP_012461434.1\|1894027_1895446_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_LS398550.1\|WP_045915700.1\|1885973_1887464_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235837
NZ_LS398550.1\|WP_012461407.1\|1866039_1866396_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_LS398550.1\|WP_012461429.1\|1888290_1888881_-\|DUF4040-domain-containing-protein	unknown	unknown	gnl\|CDD\|237121
NZ_LS398550.1\|WP_045915701.1\|1889759_1890620_-\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NZ_LS398550.1\|WP_012461428.1\|1887835_1888270_-\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|237121
NZ_LS398550.1\|WP_045915990.1\|1864997_1865747_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|131209

Protein	Function_ID	Function_description	E-value
NZ_LS398550.1\|WP_045915699.1\|1884491_1885964_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|235835	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed.	8.23364e-66
NZ_LS398550.1\|WP_045915989.1\|1863218_1864889_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.20062e-130
NZ_LS398550.1\|WP_041621791.1\|1866477_1866750_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	5.74727e-28
NZ_LS398550.1\|WP_012461412.1\|1870794_1871220_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.80888e-21
NZ_LS398550.1\|WP_012461410.1\|1867474_1868950_+\|NTP/NDP-exchange-transporter	gnl\|CDD\|367401	pfam03219, TLC, TLC ATP/ADP transporter.	0
NZ_LS398550.1\|WP_012461415.1\|1874788_1876132_+\|DUF2748-family-protein	gnl\|CDD\|371278	pfam10871, DUF2748, Protein of unknown function (DUF2748). This is a bacterial family of proteins with unknown function.	6.36847e-168
NZ_LS398550.1\|WP_174191439.1\|1890752_1893158_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_LS398550.1\|WP_012461409.1\|1866792_1867308_+\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	2.54483e-50
NZ_LS398550.1\|WP_080943541.1\|1887456_1887858_-\|cation:proton-antiporter-subunit-C	gnl\|CDD\|236004	PRK07375, PRK07375, Na+/H+ antiporter subunit C.	2.38478e-25
NZ_LS398550.1\|WP_045915987.1\|1861226_1862696_+\|trigger-factor	gnl\|CDD\|272913	TIGR00115, tig, trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. [Protein fate, Protein folding and stabilization].	1.08319e-53
NZ_LS398550.1\|WP_012461416.1\|1876365_1877475_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_LS398550.1\|WP_012461430.1\|1888877_1889207_-\|monovalent-cation/H(+)-antiporter-subunit-G	gnl\|CDD\|183669	PRK12670, PRK12670, putative monovalent cation/H+ antiporter subunit G; Reviewed.	9.93787e-20
NZ_LS398550.1\|WP_012461434.1\|1894027_1895446_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	6.10486e-135
NZ_LS398550.1\|WP_045915700.1\|1885973_1887464_-\|cation:proton-antiporter	gnl\|CDD\|235837	PRK06591, PRK06591, putative monovalent cation/H+ antiporter subunit D; Reviewed.	1.06955e-167
NZ_LS398550.1\|WP_012461407.1\|1866039_1866396_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	3.17807e-31
NZ_LS398550.1\|WP_012461429.1\|1888290_1888881_-\|DUF4040-domain-containing-protein	gnl\|CDD\|237121	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed.	1.02553e-55
NZ_LS398550.1\|WP_045915701.1\|1889759_1890620_-\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.42191e-65
NZ_LS398550.1\|WP_012461428.1\|1887835_1888270_-\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|237121	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed.	3.67364e-35
NZ_LS398550.1\|WP_045915990.1\|1864997_1865747_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|131209	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	6.85892e-36

>NZ_LS398550.1|WP_012461416.1|1876365_1877475_-|tRNA-2-thiouridine(34)-synthase-MnmA
MLNLKVAKEQATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLYNHDTAINRKGACCAGQDIYDAKFVANQLQIPHYVLNYKDKFKKSVIDNFIESYINGETPLPCVQCNQSVKFHDLLNFAKDLQADALVTGHYVRRIDTANGIELHKAVDSKKDQSYFLFATTKSQLQYLHFPLGNMTKDETRYHANRYGLHIADKPDSQDICFVADGSYHNVVARLKPNAKKPGKIVHIDGYILGEHQGIINFTIGQRRRIGISFSDPLYVINIDAQQNIVYVGPESKLFKTTFMIHSLNWLGPGNMLVEPLDVEVKVRSTHSAVQAKLYPYSNSMVKVILNEPEKAIAPGQACVIYKGDLVLGGGWIAKEQTQS
>NZ_LS398550.1|WP_012461415.1|1874788_1876132_+|DUF2748-family-protein
MSNLYHILHKLPAIEHEDMMVEYENLAQSLVQSGKLRVDAEPKINFVRLSEPSLNVNIAISNEELNDPKLQHHTKAMLINIYKKIIEKDKVIHKVNQIVSVLQKKMAMQLAVEQDLLLKLARLFVQSAHPIVIHWLLLERVEVFISYSNQIGDVMDIATWKYAGQNSGMQSINGNNIAIYVSCGGNPFFFTQRYQEQSIYGDGWPAIARLQIIAAQELGHYADIYRDINANIVGRHSVNSSFTKAKPNVLHARRSDLSRCYKILQDLEYIGLNSLITYEKSVKFYRKNKVKGIKLLWARLLSFFYKQKLYFMIKQEDFIFVKVYKNEQYSGLMLKAMILDMISNLEPKAEVYKRDDPDAEEAIACVEALARVPQQVIKWGHITTMSIMQDLYYIYYKQVIPSLIDRYQYITGKTYMRNLNYVSQTLKYRIKKLWPFFKKTSLPSREV
>NZ_LS398550.1|WP_012461412.1|1870794_1871220_-|tyrosine-type-recombinase/integrase
MRWQNIKLKEGVLYISKTKNCESQTVPLINLLIEKLKQYPYSLESEWVFPGQRENSRHLKNINVAWKKAHKRARLKNLRIHDLRRTVGSWMANFEISITIIGKVLNHNDSQSTKFYTHLNTYVVRYAIQKFANEIDKCSNL
>NZ_LS398550.1|WP_012461410.1|1867474_1868950_+|NTP/NDP-exchange-transporter
MNTNQTFNKLRQIFWPIEYHENKKFLPMALMMFFILFNYSALRSIKDSLVITSIGPEVISFLKTYIVLPSAIIAMLIYTKLCNVMNVTKVFYTITSFFLGYLILFVIVLYPNTQLVHPAPETIVKLSTNYPNFQWFIKIIGQWSYASFYAIAELWGSVMLTLLFWQFANQITKTEEAKRFYSMFGLLGNFSLLLTGYMLEHFLSENSIINAELKYTPVITTCIIAGVFIILTYAYINNYVLSDPKLYNPSIQKTTKKKAKLSMLESIKLIFSSKYLGLIVILVLSYGISINLVEGVWKAKARELYPTPEAYGMFMGNFQKWQGTVAILFMIVGSNILRQVSWYTAAIFTPLMILITGLAFFGFIFLGDSISLYVTGIAPLSIAVAIGTMQNVLSKATKYSLFDSTKEMAYIPLDHELKTKGKAAVDIIGGRLGKSGGGVIQSTFFMLLPSFSFVEASPYFGAIFFLVVILWIYSVAMLNRKYTEAIAISSN
>NZ_LS398550.1|WP_012461409.1|1866792_1867308_+|50S-ribosomal-protein-L9
MKLILIKPVKKLGKIMDIVDVANGFGRNYLLPRNYAIRATNANLEIVKSTVQQLNEKNQKGIDAAQAVMQKIDRSFITFICQTSDDGKLFGSITAKEIIKKLQISSDIKAYIDIKPIKTAGIHEVEVSLHAEVHCKIFINVARSNTEAQEYLKKFNAALQNTNNNVLVEKN
>NZ_LS398550.1|WP_041621791.1|1866477_1866750_+|30S-ribosomal-protein-S18
MKHKTLKRTANRANKEVFFRRRKGCPLSAPDGTAPIITYKDPDLLSKFISECGRVLPARVTNVCRSKQRELTKAIKIARELALLPFVYHQ
>NZ_LS398550.1|WP_012461407.1|1866039_1866396_+|30S-ribosomal-protein-S6
MRLYELVLIVRPELSSTEIDKLTDELTSIISNYEGKLVKHEYWGMRSLAYKINRNQRAHYIMLAISANNNILQKLKNKIKNNLEIIRSRFIKVKEISQTTSPILKNQSLEQTAIDVTS
>NZ_LS398550.1|WP_045915990.1|1864997_1865747_-|winged-helix-turn-helix-domain-containing-protein
MSASEKLPPQILVIELDEIQRIAICNIIERSLFNVIRLSNINDIETSSINAVLIFAPNVIIVSTSIKEVVPIDTFIQKLRTTAQKSHRIEIPIIIILNQNDNVENYQKFDNGLIEIVQYPYTDSEIILAVKSLLRRSRPILKNRLLRYKDLTMDLSNYKVYRGNKPIRLGPTEFKILQLLLESPKVILSREKIIDYVWGHGHKIDLRTVDVHVNRLRNVIKNNKSEPALIKTVRASGYCLKLPGESDYA
>NZ_LS398550.1|WP_045915989.1|1863218_1864889_-|ABC-transporter-ATP-binding-protein
MKKRNLYTNAITIKRLLCNHISIYNKLICIASVSMITAAIASVLIIKLSQLIVDEIFVAKRNSILIIVLLMIVVFVIKGLAQYYQSYLTKSIGQNILRDFHIQMYKHLIFADLEFLQKFSSGKIVSSFTNDIMLMCNSISSCISTARYFFSVVFLTGYMFIFLDPFLSLIAVTVFLIAIYITQKLGYLIHEYTYSNQEIFSNYISKLDETFRGIKVVKSYLAEDYEILMAKEKIQEISKSFSKIAKISALISPAMELLNGIAIGCIIWYGGSLGIRGQITPGELIGFISAFAAAYRPLVSLLSLNANFQEGLSAAKRIFKILDTKPKIINKNDDVVVNSKTSNKIDFVNVSLSLNDRSILYNINFSLLDGETVALVGKSGSGKTSIANLMMRFYDPSTGSIKLNNQELNDIPIQLLREKITLVTQETMLFNASIVENIAYSCTNATIEQVIDAAKKSLAHEFIMNMPYGYNTTIGPQGSELSGGQKQRISIARALLKNSPILILDEATTALDQNTESAIYESIKKYRKDKINIIITYRIHTINFDKIITLKNGSIV
>NZ_LS398550.1|WP_045915987.1|1861226_1862696_+|trigger-factor
MSQIIELQSEGLEKHFQISIPASVIKDKTDQKVISLTARANVPGFRKFKSGSHITSKAMQVKQLQIRRQYEASIRNDVQNDVIVAAVESLIKSNNFSLIGDPSIKINDDSSIEVNSEQNSNAEEKDITVDVKFTVYPEIKIPDFSQITLKKHIIQCTEESVNEFINGLRHEVYEYKDCSEQEKAIKGSKLVIDIAITGDGIEDHNKEDIEFILGSGKLISKDIEERFTDSIVGSQLDISTTLPDNYPDSKAAGKLANLRVTVKKIQQPVLITEQQILDKYKVTSIDELKVKVKELQNKEFMGLSQILLRARLLNQLDKMLDYDLPKPLLKSEYNVVRQNVLAALKDNNNNGIKVALDKSSDHDIEQYCQFVATRRVRIGLFVLHYADKKNITVTDEEKNMLLLQYLNKGKEEANAIMYAYNNNLRWLSNSIAMEAKEIKVINHILENEVQIIEEPCTSDEIEGFADEISKDMGLSFTDDAISENINNDC
>NZ_LS398550.1|WP_045915699.1|1884491_1885964_-|2-hydroxyacid-dehydrogenase
MLKNIILLYNDMICYIPFTIIGIIGIWNLIIPFLIRKNFIKEILMLAISILHAINAILLYFSYKAGYEHYTTIFSIGSFDFSLRLSLLGSNILLLIAILWPISIIYTIGFLKAHSEPNQAKFLLCTNLCILISNYIVCSANFFTMLICYELLTFATIPLIRHVTSHRTSKVLSKYTQGLYLPSLLFLMPTLVALQYQYSTTDFVEIANILQSRTLLQVSPVIFALCILCGTAKAAIVPFHSWLPPAMIAPYPVSAILHAVAVVNVGIFCLITGILSVLGKETWLLNYIQYFIGYGIVYTSIKALFQTNIKRILAYSTISNLGIIALTAFMNSHESLLATITHIIAHSIGKITVFYSAGCLYTISKCTNVEDLTSMSYKAPIITSCLTIGSLSLIGIPPLAGFFSKHHIILEAANEHNYLVIAITVFSGITSCLYLSKIIKTAYSKIDNECNINSTNNIHSEQMIPKHMLYSTVSCASLVVLIPIINALIM
>NZ_LS398550.1|WP_045915700.1|1885973_1887464_-|cation:proton-antiporter
MSNIFQAVKDHLVILEVLIPFFGSLIVVLYKKVESALIVSRLCAILGIILGIYGVLSMINSHPYFYAIGNWKAPIGIEYRVDQVNQIIIVFSYFILFLLLTFNSQLIKTNLLSSLNPSRSHLLYSILLLLHTGFCGIILSNDLFNIYVFIEIASLASYTLVSQGVDKRALIGSINYLILGTIGATFILIAIGFILSNTGSLNITDIISRLPQQRTKTLIAAIMFYITGCLLKVAMFPMSSWLISTYKYTSSVILSYFAPISCMVGFYILLYFVYQIIGITNINTLHSYYIINALGLAGAIFCSCYAVQQSNLKSIMAYSVLAETSYISLMAFNIQSSTIGAQIIVILLTSCILKSIIYSLISRIEVHYHDSELKHIAGIGSTYPVFGILFTLALISNLGLPLTIGFVNKLNIFLTVLQSLDYFGIIILAISSCMSFNYHYKIFHYLYSTQQTSHSSFTLNGNNSVAIILTIISYLMLIFYNHLLVYLQPFFLPKIM
>NZ_LS398550.1|WP_080943541.1|1887456_1887858_-|cation:proton-antiporter-subunit-C
MIMILTSKLIYFCSAVLLSLGLYIILSSYNYVKKTIGLAVFQNAVLIFYIALAKAKEGIVPIDQCFNQLSQHCSSITYSSPVSHVLMLTAIVVGIATMSVSLSIIRQIYQSFNSCNENDILLELQKMELKPDE
>NZ_LS398550.1|WP_012461428.1|1887835_1888270_-|Na(+)/H(+)-antiporter-subunit-B
MQNNNIIVASIIAKIITPYILLFALYIQINGEVSPGGGFQAGAILASAVIGYDIIYPQQLIKYKLAILPLSIIGALGVMIYGLTGLLALFYGKNYLNYYVITCTKYSQSLGIFIVELGVGIAVTASLLIIYYVFVINNDYDTNK
>NZ_LS398550.1|WP_012461429.1|1888290_1888881_-|DUF4040-domain-containing-protein
MMLSANYFPNLPLEFNIANIFLYIFCFLLIVVNIYLALSYNLLKSILLMSLSSLIICVCYLLMDAPDVAMTEASLGACLSTAILLKIAKKLQLSFNSAEKLPVYKNILCSLVCILFAVCFMLVCYDLPDFGQLSTPMHQHISKYYINNTTEQIGIPSFVAAILASYRGYDTLGETTVILCAGISVILIFANKKTNQ
>NZ_LS398550.1|WP_012461430.1|1888877_1889207_-|monovalent-cation/H(+)-antiporter-subunit-G
MLHILINSCGFFFLFCGLFFIISSVVGLSRFHDFYAKVHAAGVADSCGIPMSLIGLTIINYQSISIFKILILITLIYILGPTAAHILLKTWYNCNSQSESTKINTDSNT
>NZ_LS398550.1|WP_045915701.1|1889759_1890620_-|TIGR01459-family-HAD-type-hydrolase
MYEYETPINLSDIVKNYEVILFDIYGVLLENNIPYTKTIEVVNNLSKSTKICFVSNTPQPVQHSSNRLNIYGINATPQNVYTSGEIAREILKNSSKNLNIDNPIVFHLGPDFKKTVLEDLPIKTTEKIHDANILLLTAFEDYEEKLDQYNSIFQTAIANKAVCLCANPDVINPFENKNRYCAGYFSAIYKSMGGKVVYSGKPHSEIFQAVLNTLAQNVKKEKILMIGDTLETDILGANNIGIDSALVLTGNAFRIAKASNVHDQINILKNAFKLKNIYPKYIINII
>NZ_LS398550.1|WP_174191439.1|1890752_1893158_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MPTNQKLDQYNADSIKILRGLEAVRVRPGMYIGDISNGSGLHQLIYEVLDNSTDESLAGGCNKIEVILNKNGSVTVRDNGRGIPVDIHQEEGVSAAQVIMTQLHAGGKFDQNAYKVSGGLHGVGVSVVNALSDWLELRIWKNNQEHFMRFNNGEPQNPLSIVGEAPNKQGTEITFYPSIAIFTSVEFNFSELEHRLRELAFLNSSVEFSLTDERSSEVKDVKFFYTGGVESYVQYIDKAKAALHSTISFHQTDSHGATLELAMQWNDSFYENIVCFTNNIRQRDGGSHLQGYRSAVTRAITKYTKDHFPKNNINYNGDDIREGLSCVLSLKLPDPKFASQTKDKLVSPEARAIVEGIVYEKLVEWLEHRPSEGKKIIAKITESALAREAARKARELTRRKSALGVANLPGKLADCQQRAPEKSELFIVEGDSAGGTAKQGRNRKFQAILPLRGKVLNVERARFDKMLQSDQIGTLITALGTGIGSDDFAIDKIRYHKVVIMTDADVDGSHIRALLLTFFYRYMPTVIEKGYLYIAQPPLYKIKRGANELYLKNDQALYDYLLKIAIDEIDVIKSSGDRISNAELTTIVASIRKLTAVLNKVGNKLNKYIAEVLAITRNLSADTFNSIYQDKLSSLIQQMLPTQTLDKTNWQVEVHDDYMQFYCFVRGIKKAQSLFKSQLESPEFVSLIRLGQELSELFENRLTLKHKSEEINISLPSALLDKLLAIGKHGMSIQRFKGLGEMNSDQLWETTLDPENRTLLQVKITDFDEAEEVFSTLMSNIVEPRREFIQANALNVNNLDV
>NZ_LS398550.1|WP_045915703.1|1893197_1893722_-|hypothetical-protein
MLSQILPVLLFGCILGLNITNKLIVCSFLFILSVLITNLMAKLYHTANTLSIAMLCVLGSLALNWYNINILFIGSSAAITISLFCSTNLFNILDKKFALSFPISNLISSAIVAIIDSIIVSVALLNKFQINKVVEICIKDCVFKLSYVSVITICIYAILYFIEHLRKTNVASKA
>NZ_LS398550.1|WP_012461434.1|1894027_1895446_+|amino-acid-permease
MSIFRKKSFDLAKSTTNVNNLKKSFTAFDLILLGLGAIIGTGVFSLTGMVAAKYSGPAVTISYIIAGVVCILVALAYTELAVMIPASGSVYTYSYIALGEVFAWIMASVIILELTFGAATVAASWSAYTQGILEAGGIIIPKIYAATPFEGGIINLPAVLIVAFASFVLYLGTRDSKRLNIILVIVKLLSVGIFIIVAAPHFQAENWKNFMPFTVNSTLVGASILFFAFTGFSVLAAAAEECKNPTKDLTVGIIGSLIISTIVYVIIAGLLTGMAPFDQLDNAQPLAYALKLNGSTVGSAIVAVGAISGMTTVLMLNIYGQSRIFFAIARDGLLPKIFQKVHPTYDSPYVAILFFALIVALIGGFFPYQTVAQLSSMGALIDYMVVSVIVMLLRIQMPDAVRAFKCPAVFVVAPISLVSCIYLLFKQILDEDGNLLDTGKIIIAWMVLVLVLYFIFYYAKQSCQALAYKSKQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LS398550_1	1.1\|29099\|49\|NZ_LS398550\|CRISPRCasFinder	29099-29147	49	NZ_LS398550.1	808301-808349	0	1.0
NZ_LS398550_2	2.1\|497023\|49\|NZ_LS398550\|CRISPRCasFinder	497023-497071	49	NZ_LS398550.1	808301-808349	1	0.98
NZ_LS398550_2	2.1\|497023\|49\|NZ_LS398550\|CRISPRCasFinder	497023-497071	49	NZ_LS398550.1	1548848-1548896	2	0.959

1. spacer 1.1|29099|49|NZ_LS398550|CRISPRCasFinder matches to position: 808301-808349, mismatch: 0, identity: 1.0

ccttcggctttaccttcggctttaccttcagctttaccgagctttatgc	CRISPR spacer
ccttcggctttaccttcggctttaccttcagctttaccgagctttatgc	Protospacer
*************************************************

2. spacer 2.1|497023|49|NZ_LS398550|CRISPRCasFinder matches to position: 808301-808349, mismatch: 1, identity: 0.98

ccttcggctttaccttcagctttaccttcagctttaccgagctttatgc	CRISPR spacer
ccttcggctttaccttcggctttaccttcagctttaccgagctttatgc	Protospacer
*****************.*******************************

3. spacer 2.1|497023|49|NZ_LS398550|CRISPRCasFinder matches to position: 1548848-1548896, mismatch: 2, identity: 0.959

ccttcggctttaccttcagctttaccttcagctttaccgagctttatgc	CRISPR spacer
ccttcggctttaccttcagctttacctttagcttcaccgagctttatgc	Protospacer
****************************.*****.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LS398550_3	3.1\|1880364\|31\|NZ_LS398550\|CRISPRCasFinder	1880364-1880394	31	MN694638	Marine virus AFVG_250M1093, complete genome	6247-6277	8	0.742
NZ_LS398550_3	3.1\|1880364\|31\|NZ_LS398550\|CRISPRCasFinder	1880364-1880394	31	MN694344	Marine virus AFVG_250M1167, complete genome	37690-37720	9	0.71
NZ_LS398550_3	3.1\|1880364\|31\|NZ_LS398550\|CRISPRCasFinder	1880364-1880394	31	MN693686	Marine virus AFVG_250M1168, complete genome	6759-6789	9	0.71

1. spacer 3.1|1880364|31|NZ_LS398550|CRISPRCasFinder matches to MN694638 (Marine virus AFVG_250M1093, complete genome) position: , mismatch: 8, identity: 0.742

aaattgcggctaatcaaaagctaaaacatct	CRISPR spacer
tagctgcggaaaatcaaaagctaaaacaata	Protospacer
 *..*****  ***************** .

2. spacer 3.1|1880364|31|NZ_LS398550|CRISPRCasFinder matches to MN694344 (Marine virus AFVG_250M1167, complete genome) position: , mismatch: 9, identity: 0.71

aaattgcggctaatcaaaagctaaaacatct	CRISPR spacer
ttgctgcggaaaatcaaaagctaaaacaata	Protospacer
  ..*****  ***************** .

3. spacer 3.1|1880364|31|NZ_LS398550|CRISPRCasFinder matches to MN693686 (Marine virus AFVG_250M1168, complete genome) position: , mismatch: 9, identity: 0.71

aaattgcggctaatcaaaagctaaaacatct	CRISPR spacer
ttgctgcggaaaatcaaaagctaaaacaata	Protospacer
  ..*****  ***************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

66055 : 148701

Pseudomonas_phage(20.0%)

integrase,transposase

attL 93258:93281|attR 149231:149254

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109455604.1\|66055_67195_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4JNS1	Bacillus_phage	1.2e-18	27.6
WP_109455605.1\|67565_68132_-	hypothetical protein	NA	NA	NA	NA
WP_045918714.1\|68715_69594_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.5e-85	58.1
WP_045916144.1\|71661_72270_-	major outer membrane protein TSA22	NA	NA	NA	NA
WP_045916145.1\|72445_73249_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_045916146.1\|73340_74768_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	3.7e-38	28.5
WP_045916147.1\|75083_76445_+	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_045916148.1\|76620_77544_+	AEC family transporter	NA	NA	NA	NA
WP_045916149.1\|77673_78636_+	thioredoxin-disulfide reductase	A0A2K9L162	Tupanvirus	2.6e-56	41.1
WP_045916150.1\|78656_80168_-	deoxyribodipyrimidine photo-lyase	A0A2H4UV63	Bodo_saltans_virus	3.4e-50	30.2
WP_109455606.1\|81088_82228_-	reverse transcriptase	NA	NA	NA	NA
WP_109455607.1\|84493_84835_-	hypothetical protein	NA	NA	NA	NA
WP_045916210.1\|85818_86616_-	hypothetical protein	NA	NA	NA	NA
WP_109455608.1\|88352_89492_+	reverse transcriptase	NA	NA	NA	NA
93258:93281	attL	NA	NA	NA	NA
WP_012461997.1\|93670_95236_+	hypothetical protein	NA	NA	NA	NA
WP_045916291.1\|95239_95647_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455581.1\|95913_97629_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_109455609.1\|98310_100326_+	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	4.0e-06	26.3
WP_109455610.1\|100340_101138_+	toprim domain-containing protein	NA	NA	NA	NA
WP_045916182.1\|101335_102004_-	hypothetical protein	NA	NA	NA	NA
WP_045916181.1\|103055_103424_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_080943599.1\|103496_103871_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045916180.1\|106689_107583_-	lipase LipB	NA	NA	NA	NA
WP_052697939.1\|108155_108542_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109455611.1\|110658_112416_-	hypothetical protein	NA	NA	NA	NA
WP_045916384.1\|113091_114189_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_155367768.1\|115198_115360_+	hypothetical protein	NA	NA	NA	NA
WP_109455612.1\|116359_117616_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045916364.1\|117634_118801_+	hypothetical protein	NA	NA	NA	NA
WP_109455613.1\|118908_119391_+\|transposase	transposase	NA	NA	NA	NA
WP_109455614.1\|119820_121065_+\|integrase	site-specific integrase	A0A0R6PHM8	Moraxella_phage	4.2e-22	25.1
WP_045918854.1\|121194_121530_+	hypothetical protein	NA	NA	NA	NA
WP_109456064.1\|122077_122554_+	hypothetical protein	NA	NA	NA	NA
WP_108839640.1\|122971_123298_+	hypothetical protein	NA	NA	NA	NA
WP_174191446.1\|123751_123985_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_174191445.1\|123969_124668_+	hypothetical protein	NA	NA	NA	NA
WP_045915079.1\|124667_124997_+	hypothetical protein	NA	NA	NA	NA
WP_109455615.1\|124977_127470_+	TraC family protein	NA	NA	NA	NA
WP_109455616.1\|127466_128126_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_174190477.1\|128209_128383_+	hypothetical protein	NA	NA	NA	NA
WP_109455617.1\|129383_129767_+	conjugal transfer protein	NA	NA	NA	NA
WP_109455618.1\|130137_130836_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109455619.1\|130832_132134_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_109455620.1\|132133_134773_+	conjugal transfer protein TraG	NA	NA	NA	NA
WP_109455621.1\|134795_135941_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109455622.1\|135946_137701_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109455623.1\|137710_138670_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109456065.1\|138721_139816_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109455581.1\|145170_146886_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_109455624.1\|147095_147551_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455625.1\|147618_148701_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.5e-84	64.1
149231:149254	attR	NA	NA	NA	NA

DBSCAN-SWA_2

160964 : 223104

Streptococcus_phage(33.33%)

integrase,transposase,terminase,tRNA

attL 159679:159711|attR 224806:224838

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
159679:159711	attL	NA	NA	NA	NA
WP_162563030.1\|160964_161069_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_045916312.1\|163001_163382_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.2e-08	33.0
WP_045916311.1\|163378_164941_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_109455636.1\|165147_166476_-	reverse transcriptase	NA	NA	NA	NA
WP_045916176.1\|168194_169805_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_162563031.1\|170268_171288_-	hypothetical protein	NA	NA	NA	NA
WP_045916174.1\|171580_172783_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_045916173.1\|172889_173927_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_045916172.1\|173986_174820_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_045916171.1\|174816_175407_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_080943598.1\|175434_176637_+	coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_012461702.1\|176677_177190_+	hypothetical protein	A0A067XRB3	Caulobacter_phage	2.4e-32	47.7
WP_012461703.1\|177249_177975_+	DNA repair protein RecO	NA	NA	NA	NA
WP_012461709.1\|180942_181266_-	DUF721 domain-containing protein	NA	NA	NA	NA
WP_012461710.1\|181303_181984_-	DNA repair protein RadC	NA	NA	NA	NA
WP_012461711.1\|182232_182604_+	30S ribosomal protein S12	NA	NA	NA	NA
WP_011945044.1\|182627_183149_+	30S ribosomal protein S7	NA	NA	NA	NA
WP_045915749.1\|183152_185279_+	elongation factor G	A0A1S5SF82	Streptococcus_phage	2.5e-59	27.7
WP_045915750.1\|185540_187022_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_011945048.1\|190869_191091_-	cold-shock protein	NA	NA	NA	NA
WP_052697877.1\|191955_192180_-\|transposase	transposase	NA	NA	NA	NA
WP_080943546.1\|192326_192464_-	hypothetical protein	NA	NA	NA	NA
WP_045915751.1\|192959_193832_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_052697878.1\|194300_196151_+	hypothetical protein	NA	NA	NA	NA
WP_045915752.1\|196386_196758_+	HIT domain-containing protein	NA	NA	NA	NA
WP_109455637.1\|196805_197855_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_080943547.1\|197995_198934_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_012461722.1\|198944_200531_-	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	2.1e-10	41.2
WP_012461723.1\|200723_202145_-\|terminase	phage terminase large subunit	A0A088FB00	Idiomarinaceae_phage	1.7e-56	34.2
WP_012461724.1\|202476_203100_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_045915753.1\|203099_203660_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_045915754.1\|203669_204770_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_045912682.1\|205760_206555_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_109455638.1\|208145_209285_-	reverse transcriptase	NA	NA	NA	NA
WP_012461030.1\|209824_210106_+	hypothetical protein	NA	NA	NA	NA
WP_109455639.1\|210109_210922_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	2.8e-27	31.1
WP_109455640.1\|212080_212698_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012461731.1\|212676_213000_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_041621655.1\|213045_213381_+	hypothetical protein	NA	NA	NA	NA
WP_012461734.1\|213930_214257_+	hypothetical protein	NA	NA	NA	NA
WP_158296923.1\|215882_216020_+	hypothetical protein	NA	NA	NA	NA
WP_045916233.1\|217136_221480_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_012461740.1\|222897_223104_-\|integrase	integrase	NA	NA	NA	NA
224806:224838	attR	NA	NA	NA	NA

DBSCAN-SWA_3

253059 : 334809

Salmonella_phage(14.29%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045916136.1\|253059_254331_-\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	1.0e-23	22.4
WP_012461767.1\|254333_254819_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_012461768.1\|254823_255186_-	NADH ubiquinone oxidoreductase	NA	NA	NA	NA
WP_012461769.1\|255157_255664_-	ribonuclease HI	J9Q745	Salmonella_phage	2.4e-32	48.5
WP_012461770.1\|255663_256191_-	hypothetical protein	NA	NA	NA	NA
WP_012461771.1\|256319_257144_-	DsbA family protein	NA	NA	NA	NA
WP_012461772.1\|257272_257593_-	ferredoxin family protein	NA	NA	NA	NA
WP_012461773.1\|257598_258309_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_012461774.1\|258301_259033_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_045916137.1\|259031_259862_+	glutamine synthetase	NA	NA	NA	NA
WP_045916309.1\|260696_261197_+	hypothetical protein	NA	NA	NA	NA
WP_012461777.1\|261506_261734_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109455645.1\|261780_261948_+	hypothetical protein	NA	NA	NA	NA
WP_012461748.1\|261944_262415_+	peroxiredoxin	NA	NA	NA	NA
WP_012461976.1\|262482_262818_+	hypothetical protein	NA	NA	NA	NA
WP_109455646.1\|263490_264462_+	ATP-binding protein	NA	NA	NA	NA
WP_109455647.1\|264458_265118_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_012460825.1\|265204_265408_+	hypothetical protein	NA	NA	NA	NA
WP_174191426.1\|265408_266386_+	TraU family protein	NA	NA	NA	NA
WP_109455648.1\|266408_266792_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_109455649.1\|266788_268480_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109455650.1\|268731_269628_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109455651.1\|269737_270304_+	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	2.3e-20	37.0
WP_109455652.1\|270308_270926_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109455653.1\|271395_272535_+	reverse transcriptase	NA	NA	NA	NA
WP_109455656.1\|274004_275597_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_109455657.1\|275606_276623_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_045916296.1\|278534_279566_+	hypothetical protein	NA	NA	NA	NA
WP_109455658.1\|280637_281006_-	ATP-binding protein	NA	NA	NA	NA
WP_109455659.1\|281028_281697_-	ATP-binding protein	NA	NA	NA	NA
WP_012461798.1\|281711_282413_-	histidine kinase	NA	NA	NA	NA
WP_109455660.1\|282477_282756_-	hypothetical protein	NA	NA	NA	NA
WP_155367772.1\|282860_283037_-	hypothetical protein	NA	NA	NA	NA
WP_012461800.1\|283426_283909_-	hypothetical protein	NA	NA	NA	NA
WP_012461804.1\|287581_288061_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_012461805.1\|288107_289007_+	RNA polymerase sigma factor RpoH	G8CLC7	Synechococcus_phage	3.5e-10	26.7
WP_109455661.1\|289696_290251_-	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_012461809.1\|293168_294656_-	ankyrin repeat domain-containing protein	A0A0M3ZHP2	Turkeypox_virus	6.4e-09	32.7
WP_109455662.1\|303597_304465_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	4.7e-20	28.4
WP_045914765.1\|304780_305329_-	cytochrome c family protein	NA	NA	NA	NA
WP_108883954.1\|305588_306536_+	paraslipin	S4VT23	Pandoravirus	3.7e-10	26.1
WP_012461822.1\|310684_311701_-	P-loop NTPase	NA	NA	NA	NA
WP_045915946.1\|311880_312936_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_012461824.1\|312959_313826_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_012461825.1\|313843_315244_+\|protease	DegP-like serine protease TSA47	W5SAB9	Pithovirus	1.2e-06	31.1
WP_045915945.1\|315458_316073_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_045915944.1\|316336_319120_-	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0B5A7K5	Paracoccus_phage	1.5e-96	28.5
WP_045915943.1\|319318_320335_+	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	1.1e-17	27.1
WP_045915942.1\|320331_321237_+	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	8.8e-30	38.7
WP_045915941.1\|321171_322557_-	hypothetical protein	NA	NA	NA	NA
WP_045915940.1\|322556_324923_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.1e-90	33.7
WP_045912340.1\|325015_325972_-	malate dehydrogenase	NA	NA	NA	NA
WP_012461833.1\|326191_326686_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_012461834.1\|326854_329386_+	AsmA-like C-terminal region-containing protein	NA	NA	NA	NA
WP_041621667.1\|329600_330524_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.5e-08	28.3
WP_012461836.1\|330520_331066_-	peptide deformylase	E3SLL2	Synechococcus_phage	3.8e-20	41.7
WP_109456069.1\|332631_333726_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109455663.1\|333777_334809_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

DBSCAN-SWA_4

489398 : 559310

Wolbachia_phage(20.0%)

integrase,transposase

attL 525056:525079|attR 558487:558510

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109455694.1\|489398_490382_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109456074.1\|490433_491528_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109455695.1\|496355_496811_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455696.1\|496883_497834_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.3e-84	64.1
WP_109455697.1\|497952_498531_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	1.0e-07	30.2
WP_045916303.1\|501192_503172_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109455700.1\|504754_505261_-	hypothetical protein	NA	NA	NA	NA
WP_109234480.1\|505308_505953_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	5.7e-15	33.3
WP_045916267.1\|505987_506563_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A292GI44	Xanthomonas_phage	4.6e-08	29.2
WP_045916315.1\|508130_509948_+	ribonucleoside-diphosphate reductase subunit alpha	A0A0K1LMZ5	Caulobacter_phage	2.1e-187	54.7
WP_045916314.1\|509970_510963_+	ribonucleotide-diphosphate reductase subunit beta	M1I8A4	Pelagibacter_phage	2.2e-98	53.5
WP_012461952.1\|512131_512359_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_162563033.1\|512528_513587_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_080943620.1\|513574_514165_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	2.9e-21	44.1
WP_012461954.1\|514133_514481_+	hypothetical protein	NA	NA	NA	NA
WP_070105176.1\|514606_514810_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_012461956.1\|515438_515567_+	DNA helicase	NA	NA	NA	NA
WP_162563034.1\|515649_515937_+	hypothetical protein	NA	NA	NA	NA
WP_045917188.1\|517136_517712_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A292GI44	Xanthomonas_phage	1.1e-06	29.2
WP_109455702.1\|517749_518394_+	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	8.2e-14	33.0
WP_162563026.1\|518440_518614_+	hypothetical protein	NA	NA	NA	NA
WP_080946937.1\|520676_520853_+	ATP-binding protein	NA	NA	NA	NA
WP_109456075.1\|521306_521795_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_109456076.1\|522273_522738_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_045914126.1\|522756_523251_+	ATP-binding protein	NA	NA	NA	NA
WP_109455704.1\|523292_523880_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	1.2e-06	29.0
WP_109455705.1\|524315_525314_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.8e-84	64.5
525056:525079	attL	NA	NA	NA	NA
WP_080943627.1\|527006_527306_+	hypothetical protein	NA	NA	NA	NA
WP_109455706.1\|527375_527831_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455581.1\|528040_529756_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_109455707.1\|530455_532453_+	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	2.3e-06	25.4
WP_109455708.1\|532467_533304_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109456077.1\|535151_536246_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109227210.1\|536297_537317_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109455709.1\|537326_539081_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_045916319.1\|539084_540224_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109455666.1\|544194_544893_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109455667.1\|544889_546584_-	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109455668.1\|546580_546964_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_174190470.1\|546986_547964_-	TraU family protein	NA	NA	NA	NA
WP_174190469.1\|547964_548138_-	hypothetical protein	NA	NA	NA	NA
WP_109455710.1\|548221_548863_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_109455711.1\|548878_549157_-	conjugal transfer protein	NA	NA	NA	NA
WP_109455712.1\|551350_551680_-	conjugal transfer protein	NA	NA	NA	NA
WP_109455713.1\|551679_553002_-	conjugal transfer protein	NA	NA	NA	NA
WP_045916306.1\|553811_554288_-	hypothetical protein	NA	NA	NA	NA
WP_012460929.1\|554836_555172_-	hypothetical protein	NA	NA	NA	NA
WP_109455714.1\|555292_556492_-\|integrase	site-specific integrase	A0A0R6PGY7	Moraxella_phage	9.3e-27	26.4
WP_109455715.1\|558359_559310_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.3e-84	64.1
558487:558510	attR	NA	NA	NA	NA

DBSCAN-SWA_5

588482 : 664837

Salmonella_phage(11.11%)

integrase,transposase,tRNA

attL 620199:620224|attR 657881:657906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080943559.1\|588482_588686_+\|transposase	transposase	NA	NA	NA	NA
WP_108883845.1\|588685_588760_+\|transposase	transposase	NA	NA	NA	NA
WP_155367738.1\|588835_588976_-	hypothetical protein	NA	NA	NA	NA
WP_045916383.1\|593856_594192_+	hypothetical protein	NA	NA	NA	NA
WP_109455719.1\|594741_595218_+	hypothetical protein	NA	NA	NA	NA
WP_109455720.1\|595362_595698_+	hypothetical protein	NA	NA	NA	NA
WP_109455721.1\|596815_597310_+	ATP-binding protein	NA	NA	NA	NA
WP_109455722.1\|597351_597939_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	5.2e-07	34.1
WP_012462182.1\|599390_599939_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_045915774.1\|602120_604373_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_045915775.1\|604917_608571_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012462189.1\|610529_611771_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	3.0e-68	35.7
WP_045915757.1\|615103_616021_-	S49 family peptidase	E5AFY0	Erwinia_phage	8.1e-15	30.5
WP_045915756.1\|616331_617681_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_012462196.1\|617844_618681_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_011944320.1\|618820_619162_+	DUF2610 domain-containing protein	NA	NA	NA	NA
620199:620224	attL	NA	NA	NA	NA
WP_080943556.1\|621968_622304_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_045915835.1\|622468_623392_-\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
WP_080943555.1\|624271_624439_-	Trm112 family protein	NA	NA	NA	NA
WP_011944324.1\|624568_624790_-	hypothetical protein	NA	NA	NA	NA
WP_012462202.1\|625064_625289_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_012462203.1\|625298_625586_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_045915830.1\|625829_626702_+	DMT family transporter	NA	NA	NA	NA
WP_045915829.1\|626719_627976_+	MFS transporter	Q6JIH2	Burkholderia_virus	3.0e-44	29.6
WP_045915828.1\|628695_629448_+	hypothetical protein	NA	NA	NA	NA
WP_045915827.1\|629813_631025_-	serine hydrolase	G1BSP8	Mycobacterium_virus	9.4e-11	25.5
WP_045915826.1\|631050_632844_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_045915825.1\|633107_637298_-	DNA-directed RNA polymerase subunit beta'	A0A0N9QZ01	Chrysochromulina_ericina_virus	1.5e-52	24.9
WP_012462210.1\|637414_641539_-	DNA-directed RNA polymerase subunit beta	F2Y186	Organic_Lake_phycodnavirus	8.7e-24	29.8
WP_012462211.1\|641854_642244_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_012462212.1\|642265_642775_-	50S ribosomal protein L10	NA	NA	NA	NA
WP_045915824.1\|642778_643528_-	50S ribosomal protein L1	NA	NA	NA	NA
WP_012462214.1\|643531_643978_-	50S ribosomal protein L11	NA	NA	NA	NA
WP_041621696.1\|644017_644572_-	transcription termination/antitermination factor NusG	NA	NA	NA	NA
WP_012462216.1\|644595_644796_-	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_012462217.1\|645058_646243_-	elongation factor Tu	A0A1V0SGC3	Hokovirus	5.9e-34	28.2
WP_012462218.1\|646415_647180_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_012462219.1\|647296_647908_-	recombination protein RecR	NA	NA	NA	NA
WP_012462220.1\|647995_648532_-	septation protein A	NA	NA	NA	NA
WP_012462221.1\|648535_649375_-	FTR1 family protein	NA	NA	NA	NA
WP_012462222.1\|649403_649769_-	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_045916119.1\|650234_651467_-	EAL domain-containing protein	NA	NA	NA	NA
WP_045914269.1\|651653_652385_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-27	40.6
WP_080943588.1\|652377_653004_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_109455723.1\|657950_658811_+\|transposase	IS630 family transposase	NA	NA	NA	NA
657881:657906	attR	NA	NA	NA	NA
WP_109456080.1\|660701_660809_-	hypothetical protein	NA	NA	NA	NA
WP_045915796.1\|662016_662886_+	hypothetical protein	NA	NA	NA	NA
WP_109455724.1\|663234_664095_+	hypothetical protein	NA	NA	NA	NA
WP_155367734.1\|664078_664240_+	hypothetical protein	NA	NA	NA	NA
WP_012462268.1\|664519_664837_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

730969 : 809100

Streptococcus_phage(15.38%)

integrase,transposase,tRNA

attL 742697:742741|attR 815881:815925

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109455736.1\|730969_731905_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109455737.1\|731956_733051_-	toprim domain-containing protein	NA	NA	NA	NA
WP_045916403.1\|733238_734879_+	ankyrin repeat domain-containing protein	A0A2H4X210	Flamingopox_virus	3.6e-05	30.1
WP_109455738.1\|738042_738498_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455739.1\|738591_739125_+	hypothetical protein	NA	NA	NA	NA
WP_109455588.1\|739151_739727_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	3.0e-07	31.0
WP_109455740.1\|739827_740685_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_109455741.1\|740706_741435_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012461017.1\|741808_742618_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	2.2e-19	26.7
WP_109455742.1\|742621_743125_-	hypothetical protein	NA	NA	NA	NA
742697:742741	attL	NA	NA	NA	NA
WP_045916339.1\|743172_743817_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	1.3e-14	33.0
WP_174191428.1\|746453_747035_+	hypothetical protein	NA	NA	NA	NA
WP_174191450.1\|747021_748014_+	hypothetical protein	NA	NA	NA	NA
WP_109455743.1\|748022_749459_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	7.4e-71	36.9
WP_109455744.1\|749727_750321_+	ankyrin repeat domain-containing protein	K7Y837	Megavirus	3.4e-14	32.8
WP_109455742.1\|750418_750922_+	hypothetical protein	NA	NA	NA	NA
WP_045918899.1\|752102_752831_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_109455745.1\|752852_753710_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_045916189.1\|754392_754920_-	hypothetical protein	NA	NA	NA	NA
WP_045916188.1\|755073_755700_-	hypothetical protein	NA	NA	NA	NA
WP_012461586.1\|756255_757512_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_155367755.1\|758035_759478_-	hypothetical protein	NA	NA	NA	NA
WP_012461584.1\|759715_760252_-	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA
WP_045916186.1\|761031_762354_-	hypothetical protein	NA	NA	NA	NA
WP_109455581.1\|762594_764310_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_109455746.1\|765009_767007_+	AAA family ATPase	K4Q562	Roseovarius_Plymouth_podovirus	3.0e-06	25.4
WP_109455747.1\|767021_767819_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109456082.1\|769659_770754_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109455748.1\|770805_771825_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109455749.1\|771834_773589_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_109455750.1\|774744_777378_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_109455751.1\|778677_779394_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109455752.1\|779509_779971_-	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	5.9e-22	38.0
WP_109455753.1\|780081_781485_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109455754.1\|784662_785046_-	conjugal transfer protein	NA	NA	NA	NA
WP_174191429.1\|785068_786046_-	TraU family protein	NA	NA	NA	NA
WP_174190484.1\|786046_786223_-	hypothetical protein	NA	NA	NA	NA
WP_012461976.1\|788607_788943_-	hypothetical protein	NA	NA	NA	NA
WP_012461748.1\|789010_789481_-	peroxiredoxin	NA	NA	NA	NA
WP_109455645.1\|789477_789645_-	hypothetical protein	NA	NA	NA	NA
WP_012461777.1\|789691_789919_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_045916309.1\|790343_790844_-	hypothetical protein	NA	NA	NA	NA
WP_109455755.1\|791469_792156_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_045916248.1\|793275_793866_+	hypothetical protein	NA	NA	NA	NA
WP_045916247.1\|794117_795110_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_045916246.1\|795172_796444_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_109455756.1\|796653_797136_+\|transposase	transposase	NA	NA	NA	NA
WP_155367767.1\|797536_797701_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109456085.1\|797717_798293_+\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109455757.1\|798317_798764_+\|integrase	site-specific integrase	A0A0R6PGY7	Moraxella_phage	2.7e-08	32.3
WP_045916207.1\|798893_799229_+	hypothetical protein	NA	NA	NA	NA
WP_109455758.1\|799942_800251_+	hypothetical protein	NA	NA	NA	NA
WP_045916205.1\|801376_801991_-	hypothetical protein	NA	NA	NA	NA
WP_109455759.1\|802127_802925_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109455760.1\|802939_804955_-	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	6.8e-06	25.9
WP_109455581.1\|805636_807352_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_109455761.1\|807618_808017_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455762.1\|808089_809100_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.1e-84	64.1
815881:815925	attR	NA	NA	NA	NA

DBSCAN-SWA_7

836597 : 907646

Tupanvirus(16.67%)

protease,transposase,capsid,integrase,head,tRNA

attL 849571:849612|attR 915631:915672

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045915915.1\|836597_838544_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.2e-119	38.2
WP_045915916.1\|838794_840135_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_045915917.1\|840228_841257_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_045915918.1\|841505_844145_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_052697909.1\|844635_846852_-	AAA family ATPase	A0A2R8FE73	Brazilian_cedratvirus	1.7e-10	25.7
WP_011944565.1\|848249_848735_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_109455767.1\|849090_849501_+	hypothetical protein	NA	NA	NA	NA
849571:849612	attL	NA	NA	NA	NA
WP_041621804.1\|849849_850062_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_052697924.1\|852734_853871_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_045916093.1\|853891_854704_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_080943583.1\|854714_855689_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_012461532.1\|855666_856578_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_045916094.1\|856546_858019_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_045916089.1\|858222_858963_-	type-specific antigen TSA56	NA	NA	NA	NA
WP_045916090.1\|859191_860781_-	type-specific antigen TSA56	NA	NA	NA	NA
WP_045916091.1\|861325_862204_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_012461527.1\|862196_864248_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_080943584.1\|864225_865194_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	2.7e-37	33.8
WP_109235163.1\|868126_868771_+	SCO family protein	NA	NA	NA	NA
WP_155367767.1\|869207_869372_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109456085.1\|869388_869964_+\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109455768.1\|869988_870435_+\|integrase	site-specific integrase	A0A0R6PGY7	Moraxella_phage	2.7e-08	32.3
WP_109455769.1\|870560_870896_+	hypothetical protein	NA	NA	NA	NA
WP_012461522.1\|871445_871910_+	hypothetical protein	NA	NA	NA	NA
WP_080503932.1\|873595_873922_-\|transposase	transposase	NA	NA	NA	NA
WP_045916228.1\|878093_878840_-	hypothetical protein	NA	NA	NA	NA
WP_012461515.1\|879174_879666_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_012461514.1\|879669_880152_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_012461513.1\|880293_881145_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_045916227.1\|881146_882013_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_045916226.1\|881999_882740_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_045916225.1\|882903_883242_+	DUF167 domain-containing protein	NA	NA	NA	NA
WP_045916224.1\|883270_884239_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_045916230.1\|884294_884774_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_109455770.1\|884952_885306_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_080943557.1\|885362_885722_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_045915855.1\|885784_886141_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_045915856.1\|886386_887886_-	NTP/NDP exchange transporter	NA	NA	NA	NA
WP_080943558.1\|888437_888719_-\|transposase	transposase	NA	NA	NA	NA
WP_045915858.1\|889017_889731_+	hypothetical protein	NA	NA	NA	NA
WP_045915859.1\|890029_891298_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_045915860.1\|891315_891870_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_045912545.1\|891866_893057_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_045915861.1\|893068_893659_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_011944977.1\|893669_894185_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_045915862.1\|894197_894569_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_012461497.1\|894773_895004_+	hypothetical protein	NA	NA	NA	NA
WP_045915863.1\|897226_898072_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_109455771.1\|899778_900480_-	hypothetical protein	NA	NA	NA	NA
WP_012461493.1\|901298_902564_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_045915864.1\|902768_904130_+	cell division protein FtsZ	NA	NA	NA	NA
WP_045915865.1\|904213_905185_+	hypothetical protein	NA	NA	NA	NA
WP_045915866.1\|905964_906519_+\|head,protease	HK97 family phage prohead protease	I6S2W2	Marinomonas_phage	2.9e-23	43.8
WP_045914452.1\|906530_907646_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	1.4e-53	39.9
915631:915672	attR	NA	NA	NA	NA

DBSCAN-SWA_8

924737 : 994176

Wolbachia_phage(11.11%)

integrase,transposase,tRNA

attL 936833:936860|attR 993347:993374

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109455777.1\|924737_925664_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.6e-85	60.3
WP_012462108.1\|925731_925995_-	hypothetical protein	NA	NA	NA	NA
WP_109455778.1\|926359_926821_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_155367724.1\|926917_927061_-	hypothetical protein	NA	NA	NA	NA
WP_109455779.1\|927144_927600_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455581.1\|927809_929525_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_109455780.1\|930204_932220_+	AAA family ATPase	K4Q562	Roseovarius_Plymouth_podovirus	3.1e-06	25.4
WP_109455747.1\|932234_933032_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109456082.1\|934872_935967_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109455781.1\|936018_937062_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
936833:936860	attL	NA	NA	NA	NA
WP_109455782.1\|937071_938664_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_109455785.1\|939719_939911_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_041621572.1\|941268_941574_-	hypothetical protein	NA	NA	NA	NA
WP_080943617.1\|941626_942013_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_080943616.1\|941991_942609_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_045916379.1\|944220_945510_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045915919.1\|948633_950562_-	DUF3857 domain-containing protein	NA	NA	NA	NA
WP_045915920.1\|950607_952506_-	DUF3857 domain-containing protein	NA	NA	NA	NA
WP_045915921.1\|952655_953576_+	DMT family transporter	NA	NA	NA	NA
WP_045915922.1\|953613_954969_-	DNA repair protein RadA	NA	NA	NA	NA
WP_045912319.1\|954968_955541_-	RsmD family RNA methyltransferase	NA	NA	NA	NA
WP_045915923.1\|955559_956045_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_045915924.1\|956284_957007_+	SURF1 family protein	NA	NA	NA	NA
WP_045915925.1\|957001_957490_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_045915926.1\|957819_958749_-	site-specific tyrosine recombinase XerD	S5W9T9	Leptospira_phage	4.2e-19	28.5
WP_045915927.1\|959105_960479_+	TolC family protein	NA	NA	NA	NA
WP_045915928.1\|960523_961096_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_045915929.1\|961097_962960_+	hypothetical protein	NA	NA	NA	NA
WP_045915930.1\|963007_963772_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_012460802.1\|963768_964143_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_045915931.1\|964169_966365_+	ATP-dependent RecD-like DNA helicase	A0A0H3UZA5	Geobacillus_virus	2.1e-53	27.4
WP_045915932.1\|967367_968270_+	aminotransferase class IV	NA	NA	NA	NA
WP_045915933.1\|968250_969147_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_012460806.1\|969149_969611_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.4e-28	48.6
WP_045913288.1\|969630_970539_+	signal peptide peptidase SppA	A0A0F6TJW1	Escherichia_coli_O157_typing_phage	3.2e-19	31.6
WP_045915934.1\|970549_971458_+	lipoyl synthase	NA	NA	NA	NA
WP_045915935.1\|971478_971925_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_045915936.1\|971908_972643_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	8.2e-18	28.6
WP_109455786.1\|973782_974193_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109455787.1\|975301_975637_+	hypothetical protein	NA	NA	NA	NA
WP_109455788.1\|975636_976188_+	conjugal transfer protein	NA	NA	NA	NA
WP_012460817.1\|976184_976487_+	hypothetical protein	NA	NA	NA	NA
WP_109455789.1\|976678_977164_+	conjugal transfer protein	NA	NA	NA	NA
WP_045913550.1\|977163_977493_+	hypothetical protein	NA	NA	NA	NA
WP_109455711.1\|979685_979964_+	conjugal transfer protein	NA	NA	NA	NA
WP_109455710.1\|979979_980621_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_174190469.1\|980704_980878_+	hypothetical protein	NA	NA	NA	NA
WP_174191430.1\|980878_981856_+	TraU family protein	NA	NA	NA	NA
WP_109455790.1\|981887_982301_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109455791.1\|982506_982698_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_045915837.1\|983997_984753_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_109455673.1\|985621_985966_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_012460832.1\|986026_986356_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_045916330.1\|987040_989512_+	hypothetical protein	NA	NA	NA	NA
WP_109455792.1\|990199_991066_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.2e-21	28.8
WP_109456088.1\|992160_993207_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109455793.1\|993216_994176_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
993347:993374	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1092704 : 1172785

Wolbachia_phage(14.29%)

integrase,transposase

attL 1110567:1110626|attR 1155937:1156022

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109455815.1\|1092704_1093736_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109455816.1\|1093787_1094882_-	toprim domain-containing protein	NA	NA	NA	NA
WP_109455817.1\|1095200_1097522_-	AAA family ATPase	K4Q562	Roseovarius_Plymouth_podovirus	3.5e-06	25.4
WP_012460842.1\|1097667_1098123_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_155367766.1\|1098206_1098350_+	hypothetical protein	NA	NA	NA	NA
WP_012461022.1\|1098446_1098728_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045916373.1\|1099307_1100459_-	hypothetical protein	NA	NA	NA	NA
WP_045916374.1\|1100764_1101139_-	hypothetical protein	NA	NA	NA	NA
WP_109455818.1\|1101981_1105419_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	4.6e-10	22.6
WP_109455819.1\|1106545_1107568_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.4e-84	64.1
WP_109455626.1\|1107688_1108276_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	6.2e-08	35.7
WP_109455797.1\|1108317_1108812_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_109456066.1\|1108830_1109292_-	ATP-binding protein	NA	NA	NA	NA
WP_109456092.1\|1109779_1110259_-	sensor histidine kinase	NA	NA	NA	NA
1110567:1110626	attL	NA	NA	NA	NA
WP_109234476.1\|1110797_1111466_-	ATP-binding protein	NA	NA	NA	NA
WP_109455820.1\|1111480_1112182_-	histidine kinase	NA	NA	NA	NA
WP_045918672.1\|1112246_1112525_-	hypothetical protein	NA	NA	NA	NA
WP_109455822.1\|1115917_1117633_-	hypothetical protein	NA	NA	NA	NA
WP_080503905.1\|1117841_1118327_-	conjugal transfer protein	NA	NA	NA	NA
WP_012460817.1\|1118518_1118821_-	hypothetical protein	NA	NA	NA	NA
WP_041621572.1\|1119249_1119555_-	hypothetical protein	NA	NA	NA	NA
WP_080943617.1\|1119607_1119994_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_080943616.1\|1119972_1120590_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_109456093.1\|1121713_1122211_-	hypothetical protein	NA	NA	NA	NA
WP_045916086.1\|1123121_1123907_+	hypothetical protein	NA	NA	NA	NA
WP_045916085.1\|1124071_1126120_+	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_045916084.1\|1126786_1128364_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	1.6e-05	24.4
WP_045916083.1\|1128504_1129977_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_045916087.1\|1130087_1131848_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_045916082.1\|1133717_1134986_-	ankyrin repeat domain-containing protein	A0A2H4X242	Flamingopox_virus	3.5e-16	35.6
WP_045916081.1\|1135740_1136592_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_011944864.1\|1136598_1137666_-	rod shape-determining protein	NA	NA	NA	NA
WP_052697922.1\|1137766_1138069_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_162563038.1\|1138071_1138341_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_109455823.1\|1138460_1140452_-	hypothetical protein	NA	NA	NA	NA
WP_080943613.1\|1140893_1145060_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA
WP_045916242.1\|1145867_1147895_+	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_109455825.1\|1149203_1150919_+	hypothetical protein	NA	NA	NA	NA
WP_109455826.1\|1150927_1152364_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.8e-72	37.0
WP_109455827.1\|1152597_1153173_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A292GI44	Xanthomonas_phage	3.9e-07	28.6
WP_109455828.1\|1153207_1153852_+	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	2.8e-14	33.0
WP_109227213.1\|1153899_1154448_+	hypothetical protein	NA	NA	NA	NA
WP_109455829.1\|1154451_1155261_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	6.9e-18	26.0
WP_045915136.1\|1155636_1155915_+	hypothetical protein	NA	NA	NA	NA
WP_109455830.1\|1155979_1156681_+	sensor histidine kinase	NA	NA	NA	NA
1155937:1156022	attR	NA	NA	NA	NA
WP_109456094.1\|1157134_1157611_+	sensor histidine kinase	NA	NA	NA	NA
WP_109456095.1\|1158098_1158560_+	sensor histidine kinase	NA	NA	NA	NA
WP_109455831.1\|1158578_1159073_+	ATP-binding protein	NA	NA	NA	NA
WP_109455832.1\|1159114_1159702_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	4.3e-09	35.7
WP_109455833.1\|1159823_1160906_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.0e-84	64.1
WP_045915951.1\|1161506_1162580_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_155367724.1\|1162676_1162820_-	hypothetical protein	NA	NA	NA	NA
WP_109455834.1\|1162903_1163359_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455581.1\|1163568_1165284_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_109455835.1\|1165983_1167975_+	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	3.0e-06	26.3
WP_109455836.1\|1167989_1168826_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109456096.1\|1170667_1171762_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109455837.1\|1171813_1172785_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1314891 : 1399284

Wolbachia_phage(25.0%)

integrase,transposase

attL 1356208:1356226|attR 1410961:1410979

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109455866.1\|1314891_1315782_+\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109456098.1\|1315739_1316210_+\|integrase	site-specific integrase	B6SD79	Bacteriophage	5.5e-07	27.8
WP_045916236.1\|1316265_1316601_+	hypothetical protein	NA	NA	NA	NA
WP_012460817.1\|1317151_1317454_+	hypothetical protein	NA	NA	NA	NA
WP_109455671.1\|1317645_1318131_+	conjugal transfer protein	NA	NA	NA	NA
WP_045912833.1\|1318130_1318451_+	hypothetical protein	NA	NA	NA	NA
WP_109455670.1\|1318431_1320921_+	TraC family protein	NA	NA	NA	NA
WP_109455867.1\|1320917_1321577_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_109455868.1\|1321614_1322559_+	TraU family protein	NA	NA	NA	NA
WP_109455790.1\|1322590_1323004_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109455791.1\|1323209_1323401_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109455869.1\|1324700_1325651_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_011945086.1\|1326846_1327716_-	RMD1 family protein	NA	NA	NA	NA
WP_155367752.1\|1329214_1329355_+	hypothetical protein	NA	NA	NA	NA
WP_045916165.1\|1330031_1331111_-	COX15/CtaA family protein	NA	NA	NA	NA
WP_045916275.1\|1335577_1338181_-	hypothetical protein	NA	NA	NA	NA
WP_045916263.1\|1340273_1340897_-	CvpA family protein	NA	NA	NA	NA
WP_012461313.1\|1340893_1341466_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_045916262.1\|1341638_1343381_+	cation:proton antiporter	NA	NA	NA	NA
WP_012461311.1\|1343361_1343859_+	hypothetical protein	NA	NA	NA	NA
WP_045916261.1\|1344146_1345361_+	aspartate kinase	NA	NA	NA	NA
WP_158296914.1\|1346504_1346693_-	hypothetical protein	NA	NA	NA	NA
WP_109455870.1\|1347472_1347733_-	reverse transcriptase N-terminal domain-containing protein	NA	NA	NA	NA
WP_045916107.1\|1348236_1349316_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_012461305.1\|1349319_1350447_-	cell division protein FtsW	NA	NA	NA	NA
WP_045916108.1\|1350453_1351872_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_045916109.1\|1351954_1352581_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_109455725.1\|1354972_1355254_+	hypothetical protein	NA	NA	NA	NA
WP_109455871.1\|1355257_1356067_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	3.9e-21	27.1
1356208:1356226	attL	NA	NA	NA	NA
WP_045916370.1\|1358141_1358717_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	8.7e-07	30.2
WP_080943633.1\|1359227_1359596_+	hypothetical protein	NA	NA	NA	NA
WP_109455873.1\|1359654_1360110_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455581.1\|1360318_1362034_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_174191452.1\|1367415_1368510_+	toprim domain-containing protein	NA	NA	NA	NA
WP_045916258.1\|1368494_1369511_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109455874.1\|1369520_1370588_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109455875.1\|1370593_1371112_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_080946937.1\|1373632_1373809_+	ATP-binding protein	NA	NA	NA	NA
WP_012460852.1\|1373937_1374219_+	hypothetical protein	NA	NA	NA	NA
WP_012461209.1\|1374260_1374749_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_109456100.1\|1375226_1375691_+	ATP-binding protein	NA	NA	NA	NA
WP_109455876.1\|1375709_1376204_+	ATP-binding protein	NA	NA	NA	NA
WP_109455877.1\|1376245_1376833_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	3.6e-08	34.9
WP_109455878.1\|1376953_1377880_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.2e-84	58.7
WP_109455879.1\|1377947_1378211_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_045916282.1\|1378541_1378748_-	hypothetical protein	NA	NA	NA	NA
WP_109455880.1\|1379548_1380025_+	hypothetical protein	NA	NA	NA	NA
WP_045916284.1\|1380410_1381538_+	hypothetical protein	NA	NA	NA	NA
WP_109455881.1\|1385939_1386668_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012461109.1\|1388942_1389686_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012461108.1\|1389810_1390071_+	peptide chain release factor RF-2	NA	NA	NA	NA
WP_050731345.1\|1390257_1390560_-	hypothetical protein	NA	NA	NA	NA
WP_045916382.1\|1392068_1394219_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	3.3e-107	37.2
WP_041621607.1\|1396803_1397394_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.3e-26	48.9
WP_080943616.1\|1398301_1398919_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_080943617.1\|1398897_1399284_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1410961:1410979	attR	NA	NA	NA	NA

DBSCAN-SWA_11

1404864 : 1441944

Thermus_phage(16.67%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109455887.1\|1404864_1405833_-\|transposase	IS110-like element ISOt5 family transposase	A0A1S7J231	Thermus_phage	1.9e-22	29.8
WP_045913929.1\|1406003_1406339_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_109455852.1\|1407863_1409192_-	reverse transcriptase	NA	NA	NA	NA
WP_109455888.1\|1409731_1410013_+	hypothetical protein	NA	NA	NA	NA
WP_109455716.1\|1411378_1412095_+	hypothetical protein	NA	NA	NA	NA
WP_174191427.1\|1412443_1413172_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012462309.1\|1413612_1414188_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	B3FJI5	Pseudomonas_phage	5.7e-06	40.0
WP_109455889.1\|1414309_1415248_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.7e-84	60.6
WP_109455890.1\|1415315_1415771_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_174191433.1\|1415938_1417945_+	AAA family ATPase	NA	NA	NA	NA
WP_109455892.1\|1417959_1418796_+	toprim domain-containing protein	NA	NA	NA	NA
WP_045916034.1\|1419071_1419629_+	hypothetical protein	NA	NA	NA	NA
WP_080943575.1\|1420657_1422829_+	hypothetical protein	NA	NA	NA	NA
WP_045916036.1\|1423565_1425026_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_045916037.1\|1425028_1426507_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_045912509.1\|1426506_1426806_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_045916038.1\|1426888_1428625_-	ribonuclease J	NA	NA	NA	NA
WP_045916039.1\|1428738_1429476_-	response regulator transcription factor	A0A0K0PVG9	Roseobacter_phage	1.9e-14	57.7
WP_158296909.1\|1432859_1432994_+	hypothetical protein	NA	NA	NA	NA
WP_041621747.1\|1436029_1436824_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_109455893.1\|1437156_1438024_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	3.2e-21	33.8
WP_011944867.1\|1438803_1439424_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-59	59.3
WP_080503907.1\|1440311_1440497_+	HNH endonuclease	NA	NA	NA	NA
WP_012461061.1\|1440808_1441684_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_080503908.1\|1441704_1441944_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1673611 : 1740689

Wolbachia_phage(14.29%)

integrase,portal,transposase

attL 1683010:1683030|attR 1750484:1750504

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045915961.1\|1673611_1674802_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	5.4e-59	37.1
WP_045915960.1\|1674820_1675087_+	hypothetical protein	NA	NA	NA	NA
WP_011945001.1\|1675512_1675752_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_045915959.1\|1675930_1677493_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_045915958.1\|1679143_1679830_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045915957.1\|1680307_1681390_+	hypothetical protein	NA	NA	NA	NA
WP_012461129.1\|1681550_1681877_-	reverse transcriptase	NA	NA	NA	NA
1683010:1683030	attL	NA	NA	NA	NA
WP_012461126.1\|1685040_1686222_-	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	5.2e-14	22.0
WP_045915956.1\|1686707_1686941_-	hypothetical protein	NA	NA	NA	NA
WP_109455938.1\|1689544_1690054_+	sensor histidine kinase	NA	NA	NA	NA
WP_109455939.1\|1690068_1690737_+	ATP-binding protein	NA	NA	NA	NA
WP_109455940.1\|1691985_1692480_+	ATP-binding protein	NA	NA	NA	NA
WP_109455941.1\|1692521_1692914_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1X9SH80	Bradyrhizobium_phage	7.7e-07	38.8
WP_012461118.1\|1692953_1693109_+	hypothetical protein	NA	NA	NA	NA
WP_109455942.1\|1693230_1694133_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.0e-86	57.6
WP_109455943.1\|1694202_1694466_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455778.1\|1694796_1695258_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_155367724.1\|1695354_1695498_-	hypothetical protein	NA	NA	NA	NA
WP_109455944.1\|1695581_1695980_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455945.1\|1696563_1698282_+	hypothetical protein	NA	NA	NA	NA
WP_109455946.1\|1698290_1699727_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.8e-72	37.4
WP_109455947.1\|1699959_1700535_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	2.1e-08	31.9
WP_109455948.1\|1700569_1701214_+	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	2.3e-08	30.3
WP_064612560.1\|1701261_1701810_+	hypothetical protein	NA	NA	NA	NA
WP_045917470.1\|1701813_1702623_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	2.4e-18	26.7
WP_080943646.1\|1702996_1703374_+	hypothetical protein	NA	NA	NA	NA
WP_052694805.1\|1703438_1704140_+	sensor histidine kinase	NA	NA	NA	NA
WP_109234476.1\|1704154_1704823_+	ATP-binding protein	NA	NA	NA	NA
WP_109456107.1\|1705135_1705615_+	sensor histidine kinase	NA	NA	NA	NA
WP_109456108.1\|1706102_1706570_+	sensor histidine kinase	NA	NA	NA	NA
WP_109455949.1\|1706588_1707083_+	ATP-binding protein	NA	NA	NA	NA
WP_109455950.1\|1707124_1707712_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	2.2e-05	31.0
WP_109455951.1\|1707833_1708916_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	6.7e-85	64.9
WP_109455952.1\|1708983_1709439_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455953.1\|1709735_1712585_+	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	2.7e-08	24.2
WP_109456065.1\|1714429_1715524_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109455954.1\|1715575_1716559_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109455955.1\|1716568_1717816_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_109455956.1\|1717817_1718324_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_045917742.1\|1718329_1719478_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109455957.1\|1719490_1722118_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_045916164.1\|1722117_1723419_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_109455841.1\|1723415_1724114_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109455958.1\|1724110_1725802_-	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109455668.1\|1725798_1726182_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_174191437.1\|1726204_1727182_-	TraU family protein	NA	NA	NA	NA
WP_174190469.1\|1727182_1727356_-	hypothetical protein	NA	NA	NA	NA
WP_109455959.1\|1727439_1728099_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_109455960.1\|1728095_1730585_-	TraC family protein	NA	NA	NA	NA
WP_109455961.1\|1730565_1730886_-	conjugal transfer protein	NA	NA	NA	NA
WP_109455962.1\|1730885_1732214_-	conjugal transfer protein	NA	NA	NA	NA
WP_081420566.1\|1732252_1732588_-	hypothetical protein	NA	NA	NA	NA
WP_064612632.1\|1733084_1733573_-	hypothetical protein	NA	NA	NA	NA
WP_045912835.1\|1733569_1734121_-	conjugal transfer protein	NA	NA	NA	NA
WP_045918854.1\|1734120_1734456_-	hypothetical protein	NA	NA	NA	NA
WP_052694720.1\|1734511_1735831_-\|integrase	site-specific integrase	Q9T1R0	Acyrthosiphon_pisum_secondary_endosymbiont_phage	4.0e-15	26.4
WP_045916238.1\|1738063_1738903_+	hypothetical protein	A0A1V0SE83	Indivirus	2.5e-10	30.2
WP_155367758.1\|1738916_1739426_+	hypothetical protein	NA	NA	NA	NA
WP_052697951.1\|1739585_1739807_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_109455963.1\|1739820_1740689_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.6e-20	33.8
1750484:1750504	attR	NA	NA	NA	NA

DBSCAN-SWA_13

1744357 : 1942422

119

Moraxella_phage(14.81%)

integrase,transposase,tRNA

attL 1756073:1756132|attR 1955848:1955875

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109455729.1\|1744357_1744918_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109455964.1\|1746108_1746570_+\|transposase	transposase	NA	NA	NA	NA
WP_109455965.1\|1746579_1747647_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109455966.1\|1747652_1748171_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_109455884.1\|1749226_1749418_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109455968.1\|1750489_1750759_-	conjugal transfer protein	NA	NA	NA	NA
WP_045915079.1\|1752951_1753281_-	hypothetical protein	NA	NA	NA	NA
WP_109490213.1\|1753280_1753463_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_041621637.1\|1753807_1754143_-	hypothetical protein	NA	NA	NA	NA
WP_109455801.1\|1754449_1755589_-	reverse transcriptase	NA	NA	NA	NA
1756073:1756132	attL	NA	NA	NA	NA
WP_011944947.1\|1760309_1760672_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
1756073:1756132	attL	NA	NA	NA	NA
WP_045915875.1\|1760702_1763246_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	4.7e-28	27.1
WP_045915876.1\|1763495_1764998_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_012461262.1\|1765016_1765499_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_045915877.1\|1766036_1766810_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_045915878.1\|1766806_1768195_+	2-polyprenylphenol 6-hydroxylase	A0A0R6PKQ6	Moraxella_phage	5.0e-32	25.9
WP_109455969.1\|1768276_1769098_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_109455970.1\|1771103_1773923_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_080503914.1\|1777170_1777314_+	hypothetical protein	NA	NA	NA	NA
WP_045915891.1\|1777485_1779348_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_045915892.1\|1779337_1780606_-	DUF21 domain-containing protein	NA	NA	NA	NA
WP_155367740.1\|1781866_1782037_+	hypothetical protein	NA	NA	NA	NA
WP_045915893.1\|1782136_1782778_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	4.2e-26	30.7
WP_045915894.1\|1782818_1785710_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_045915895.1\|1785709_1786987_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_045915896.1\|1786992_1788471_+	hypothetical protein	NA	NA	NA	NA
WP_045915897.1\|1788759_1790061_+	MFS transporter	Q6JIH2	Burkholderia_virus	8.5e-34	27.5
WP_045915898.1\|1790127_1790466_+	YraN family protein	NA	NA	NA	NA
WP_045915899.1\|1790855_1791680_-	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_045915900.1\|1791861_1792839_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.1e-05	25.7
WP_045913430.1\|1792838_1793456_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_045915901.1\|1793700_1795836_-	hypothetical protein	NA	NA	NA	NA
WP_045915902.1\|1796229_1797429_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_045915903.1\|1797830_1798010_+	hypothetical protein	NA	NA	NA	NA
WP_109455971.1\|1798070_1798484_+\|transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	1.3e-07	28.5
WP_109455972.1\|1798902_1802340_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.7e-09	22.3
WP_109455973.1\|1802937_1804179_+\|integrase	site-specific integrase	A0A0R6PHM8	Moraxella_phage	6.0e-21	24.5
WP_041621637.1\|1804302_1804638_+	hypothetical protein	NA	NA	NA	NA
1804239:1804357	attR	NA	NA	NA	NA
WP_080503920.1\|1804984_1805167_+	conjugal transfer protein TraB	NA	NA	NA	NA
1804239:1804357	attR	NA	NA	NA	NA
WP_012461365.1\|1806663_1807653_-	ankyrin repeat domain-containing protein	A0A0M3ZHR3	Turkeypox_virus	3.3e-14	30.2
WP_109455974.1\|1812560_1813136_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A292GI44	Xanthomonas_phage	7.9e-08	28.8
WP_045915794.1\|1814222_1815848_+	repeat-containing protein D	NA	NA	NA	NA
WP_012461375.1\|1816659_1817325_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	4.2e-13	40.2
WP_012461376.1\|1818334_1819201_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_045915790.1\|1819864_1820653_-	TatD family hydrolase	NA	NA	NA	NA
WP_045915789.1\|1820664_1822200_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	1.0e-94	39.4
WP_045915788.1\|1822386_1824327_+	primosomal protein N'	NA	NA	NA	NA
WP_012461380.1\|1824642_1824930_+	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_012461381.1\|1824940_1827358_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_045915787.1\|1827357_1829805_+	type IV secretion system protein	NA	NA	NA	NA
WP_045915786.1\|1829826_1833708_+	type IV secretion system protein	NA	NA	NA	NA
WP_045915785.1\|1833761_1837034_+	type IV secretion system protein	NA	NA	NA	NA
WP_045915784.1\|1837026_1839591_+	type IV secretion system protein	NA	NA	NA	NA
WP_045915783.1\|1839627_1840881_+	MFS transporter	NA	NA	NA	NA
WP_045915782.1\|1840908_1842951_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.0e-97	36.4
WP_045915793.1\|1843131_1844478_+\|tRNA	glutamate--tRNA ligase	A0A2K9L594	Tupanvirus	2.0e-09	35.7
WP_045915781.1\|1844542_1845979_+\|tRNA	cysteine--tRNA ligase	H2EDD6	Moumouvirus	5.0e-51	33.1
WP_045916272.1\|1848304_1848982_+	DUF2659 family protein	NA	NA	NA	NA
WP_109455975.1\|1849035_1850394_+	PQQ-like beta-propeller repeat protein	NA	NA	NA	NA
WP_174191438.1\|1850794_1851322_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_012461396.1\|1852389_1852560_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_012461397.1\|1852568_1852892_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_080943569.1\|1854165_1854339_-\|transposase	transposase	NA	NA	NA	NA
WP_045915985.1\|1856815_1857181_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_012461401.1\|1857200_1857407_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_045914198.1\|1857851_1859744_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.1e-89	30.9
WP_045915986.1\|1859908_1861075_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_045915987.1\|1861226_1862696_+	trigger factor	NA	NA	NA	NA
WP_045915989.1\|1863218_1864889_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.2e-44	29.0
WP_045915990.1\|1864997_1865747_-	winged helix-turn-helix domain-containing protein	W8CYM9	Bacillus_phage	1.2e-11	27.5
WP_012461407.1\|1866039_1866396_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_041621791.1\|1866477_1866750_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_012461409.1\|1866792_1867308_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_012461410.1\|1867474_1868950_+	NTP/NDP exchange transporter	NA	NA	NA	NA
WP_012461412.1\|1870794_1871220_-\|integrase	tyrosine-type recombinase/integrase	A0A0R6PGY7	Moraxella_phage	1.2e-05	27.1
WP_012461415.1\|1874788_1876132_+	DUF2748 family protein	NA	NA	NA	NA
WP_012461416.1\|1876365_1877475_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_045915699.1\|1884491_1885964_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA
WP_045915700.1\|1885973_1887464_-	cation:proton antiporter	NA	NA	NA	NA
WP_080943541.1\|1887456_1887858_-	cation:proton antiporter subunit C	NA	NA	NA	NA
WP_012461428.1\|1887835_1888270_-	Na(+)/H(+) antiporter subunit B	NA	NA	NA	NA
WP_012461429.1\|1888290_1888881_-	DUF4040 domain-containing protein	NA	NA	NA	NA
WP_012461430.1\|1888877_1889207_-	monovalent cation/H(+) antiporter subunit G	NA	NA	NA	NA
WP_045915701.1\|1889759_1890620_-	TIGR01459 family HAD-type hydrolase	NA	NA	NA	NA
WP_174191439.1\|1890752_1893158_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.6e-110	34.0
WP_045915703.1\|1893197_1893722_-	hypothetical protein	NA	NA	NA	NA
WP_012461434.1\|1894027_1895446_+	amino acid permease	NA	NA	NA	NA
WP_045915705.1\|1898356_1900060_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_012461437.1\|1900056_1900680_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_012461438.1\|1900627_1901569_+	acetylglutamate kinase	NA	NA	NA	NA
WP_045915974.1\|1903079_1905929_-	cell surface protein	NA	NA	NA	NA
WP_012461442.1\|1906062_1906728_-	guanylate kinase	A0A223FN12	Murmansk_poxvirus	6.5e-14	31.2
WP_045915975.1\|1906936_1907710_-	hypothetical protein	NA	NA	NA	NA
WP_080943566.1\|1908102_1908186_+\|transposase	transposase	NA	NA	NA	NA
WP_045915976.1\|1908472_1908829_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_045915977.1\|1908886_1910239_-	signal recognition particle protein	D6PHS7	uncultured_phage	3.9e-05	26.8
WP_011944757.1\|1911334_1911616_-	ETC complex I subunit	NA	NA	NA	NA
WP_011944758.1\|1911669_1911909_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_162563045.1\|1913796_1913934_-	hypothetical protein	NA	NA	NA	NA
WP_109455978.1\|1914021_1914219_-	hypothetical protein	NA	NA	NA	NA
WP_045915978.1\|1916138_1916816_+	histidine phosphotransferase	NA	NA	NA	NA
WP_174191455.1\|1916885_1918280_+	class II fumarate hydratase	NA	NA	NA	NA
WP_045915980.1\|1918446_1919925_-	MFS transporter	A0A0P0IY73	Acinetobacter_phage	7.2e-37	29.1
WP_162563046.1\|1921069_1921204_+	hypothetical protein	NA	NA	NA	NA
WP_045915981.1\|1923172_1924648_-	ankyrin repeat domain-containing protein	A0A1V0QG14	Shearwaterpox_virus	5.0e-06	25.8
WP_174191456.1\|1926144_1926888_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_162563027.1\|1927337_1928390_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_109455979.1\|1929689_1930406_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_109455980.1\|1930521_1930980_-	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	1.4e-23	40.1
WP_109455981.1\|1931089_1932085_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109455982.1\|1933046_1933496_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.7e-05	32.6
WP_174191440.1\|1933673_1933904_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_174191441.1\|1933872_1934244_+\|integrase	tyrosine-type recombinase/integrase	A0A0R6PGY7	Moraxella_phage	3.5e-09	34.2
WP_109455983.1\|1934843_1935983_+	reverse transcriptase	NA	NA	NA	NA
WP_109455984.1\|1937422_1937797_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455985.1\|1937798_1939046_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_109455964.1\|1939055_1939517_-\|transposase	transposase	NA	NA	NA	NA
WP_109455986.1\|1940996_1941893_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109455930.1\|1941882_1942422_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
1955848:1955875	attR	NA	NA	NA	NA

DBSCAN-SWA_14

1951520 : 2028296

Bacillus_phage(15.38%)

protease,integrase,transposase,tRNA

attL 1940717:1940744|attR 1980910:1980937

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1940717:1940744	attL	NA	NA	NA	NA
WP_109455994.1\|1951520_1952396_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_045916364.1\|1952503_1953670_-	hypothetical protein	NA	NA	NA	NA
WP_109455612.1\|1953688_1954945_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109455995.1\|1956844_1958617_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	1.6e-96	35.6
WP_045916052.1\|1958613_1960713_-	NAD-dependent DNA ligase LigA	A0A1W6DX16	Sphingobium_phage	2.2e-100	36.1
WP_173024090.1\|1960776_1961238_-	nucleoside deaminase	NA	NA	NA	NA
WP_012462319.1\|1961299_1962217_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_045916053.1\|1962495_1963293_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011945017.1\|1964438_1964987_-	NifU family protein	Q58MC7	Prochlorococcus_phage	2.7e-05	37.8
WP_045916054.1\|1965024_1965378_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_012462322.1\|1965454_1966093_+	endonuclease III	NA	NA	NA	NA
WP_045916055.1\|1966089_1966722_+	esterase	NA	NA	NA	NA
WP_045916056.1\|1967041_1970515_+	acyl-[ACP]--phospholipid O-acyltransferase	Q75ZG1	Hepacivirus	3.5e-18	23.4
WP_012462325.1\|1971410_1971782_-	DNA helicase	A0A218KST2	Xenohaliotis_phage	1.9e-18	47.9
WP_012462327.1\|1972750_1973491_-	ribonuclease III	A0A0P0YM82	Yellowstone_lake_phycodnavirus	1.0e-23	34.1
WP_012462328.1\|1973545_1974286_-	signal peptidase I	NA	NA	NA	NA
WP_109455997.1\|1974843_1975326_+\|transposase	transposase	NA	NA	NA	NA
WP_158296904.1\|1975728_1975905_+	hypothetical protein	NA	NA	NA	NA
WP_162563047.1\|1975907_1976018_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_109455998.1\|1976138_1976951_+\|integrase	site-specific integrase	B6SD77	Bacteriophage	1.1e-15	28.8
WP_041621637.1\|1977074_1977410_+	hypothetical protein	NA	NA	NA	NA
WP_080503920.1\|1977756_1977939_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_109455999.1\|1978891_1979701_-	PRANC domain-containing protein	A0A1V0QGP6	Shearwaterpox_virus	2.2e-11	27.9
WP_155367736.1\|1980267_1980411_-	hypothetical protein	NA	NA	NA	NA
WP_011944475.1\|1982967_1983093_-	50S ribosomal protein L36	NA	NA	NA	NA
1980910:1980937	attR	NA	NA	NA	NA
WP_012460755.1\|1984180_1984507_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	5.8e-16	45.5
WP_045915814.1\|1984529_1986848_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_012460753.1\|1986860_1987922_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_052697890.1\|1988031_1989381_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_045915813.1\|1989441_1990263_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_045915812.1\|1990391_1991267_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_012460749.1\|1991449_1991758_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_012460748.1\|1992293_1993190_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012460747.1\|1993186_1994395_-\|tRNA	CCA tRNA nucleotidyltransferase	K4JS34	Caulobacter_phage	6.1e-34	30.9
WP_012460746.1\|1994447_1995647_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_045915811.1\|1995824_1999292_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	1.8e-06	24.6
WP_011944487.1\|1999304_1999796_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_045914331.1\|1999859_2000711_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_052697888.1\|2000717_2001521_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_080943553.1\|2001946_2002474_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_045912408.1\|2002753_2002960_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_011944492.1\|2003056_2003422_+	membrane protein	NA	NA	NA	NA
WP_045915810.1\|2003789_2004710_-	GTPase Era	NA	NA	NA	NA
WP_045912406.1\|2004706_2005729_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_045915809.1\|2005933_2007013_-	peptide chain release factor 1	NA	NA	NA	NA
WP_045915972.1\|2008246_2008948_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_012460733.1\|2008967_2009753_-	extragenic suppressor protein SuhB	NA	NA	NA	NA
WP_012460732.1\|2009749_2010319_-	elongation factor P	NA	NA	NA	NA
WP_012460731.1\|2010523_2011777_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.0e-120	53.6
WP_045915971.1\|2012004_2013306_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_012460729.1\|2013319_2013613_-	hypothetical protein	NA	NA	NA	NA
WP_045915970.1\|2013626_2014847_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_045915969.1\|2014927_2015944_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_045915968.1\|2016218_2018672_+	virB4 protein precursor	NA	NA	NA	NA
WP_045915967.1\|2018671_2023192_+	hypothetical protein	NA	NA	NA	NA
WP_045915966.1\|2025434_2027171_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	3.3e-41	25.8
WP_012462339.1\|2027154_2027487_-	iron donor protein CyaY	NA	NA	NA	NA
WP_080943565.1\|2028077_2028296_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_15

2162406 : 2169297

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109456026.1\|2162406_2163114_-	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	3.8e-12	32.8
WP_109456027.1\|2163151_2163727_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9LAT2	Tupanvirus	7.9e-08	31.9
WP_109456117.1\|2164320_2164998_+	hypothetical protein	NA	NA	NA	NA
WP_109455946.1\|2165006_2166443_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.8e-72	37.4
WP_109456028.1\|2166675_2167251_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	2.1e-08	31.9
WP_064612913.1\|2167285_2167930_+	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	1.7e-14	33.0
WP_109455700.1\|2167977_2168484_+	hypothetical protein	NA	NA	NA	NA
WP_109456029.1\|2168487_2169297_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	1.0e-21	29.5

DBSCAN-SWA_16

2174620 : 2240893

Pseudomonas_phage(16.67%)

integrase,transposase

attL 2219449:2219471|attR 2255260:2255282

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109456031.1\|2174620_2175607_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.4e-84	64.1
WP_080943640.1\|2176650_2178060_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_109456032.1\|2178261_2178717_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455581.1\|2178926_2180642_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_109456033.1\|2181341_2184164_+	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	1.3e-07	24.1
WP_109456034.1\|2185771_2186638_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	5.5e-21	28.8
WP_109456118.1\|2187496_2188591_+	toprim domain-containing protein	NA	NA	NA	NA
WP_109456035.1\|2188642_2189602_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_109456036.1\|2189611_2191366_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109456037.1\|2192501_2195120_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_045916426.1\|2197160_2197691_-	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	1.6e-15	38.2
WP_109456038.1\|2198552_2199449_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_109456039.1\|2199702_2201391_-	conjugal transfer protein TraN	NA	NA	NA	NA
WP_109456040.1\|2201387_2201771_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_045915815.1\|2202760_2203765_+	ankyrin repeat domain-containing protein	A0A1V0QGP6	Shearwaterpox_virus	1.9e-09	29.6
WP_109456041.1\|2203663_2205466_-	TraC family protein	NA	NA	NA	NA
WP_109455712.1\|2205446_2205776_-	conjugal transfer protein	NA	NA	NA	NA
WP_109455713.1\|2205775_2207098_-	conjugal transfer protein	NA	NA	NA	NA
WP_045916306.1\|2207907_2208384_-	hypothetical protein	NA	NA	NA	NA
WP_012460929.1\|2208932_2209268_-	hypothetical protein	NA	NA	NA	NA
WP_109455848.1\|2209388_2210588_-\|integrase	site-specific integrase	A0A0R6PGY7	Moraxella_phage	2.1e-26	25.9
WP_109456042.1\|2211987_2213166_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	4.8e-52	35.1
WP_109456119.1\|2213169_2213223_+	hypothetical protein	NA	NA	NA	NA
WP_109456043.1\|2213389_2215099_+	hypothetical protein	NA	NA	NA	NA
WP_045916338.1\|2215477_2216053_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9LAT2	Tupanvirus	4.3e-06	29.6
WP_109455702.1\|2216090_2216735_+	ankyrin repeat domain-containing protein	A0A2K9L931	Tupanvirus	8.2e-14	33.0
WP_162563026.1\|2216781_2216955_+	hypothetical protein	NA	NA	NA	NA
WP_109456044.1\|2217252_2218392_-	reverse transcriptase	NA	NA	NA	NA
2219449:2219471	attL	NA	NA	NA	NA
WP_045916271.1\|2222262_2223417_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012462127.1\|2224439_2225075_+	Tim44 domain-containing protein	NA	NA	NA	NA
WP_174191457.1\|2225188_2225935_+	rhodanese domain-containing protein	NA	NA	NA	NA
WP_109456045.1\|2227809_2229009_+\|integrase	site-specific integrase	A0A0R6PGY7	Moraxella_phage	2.1e-26	25.9
WP_109456046.1\|2231527_2232073_-	hypothetical protein	NA	NA	NA	NA
WP_109456047.1\|2232161_2232617_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_109455581.1\|2232826_2234542_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-85	36.5
WP_109456048.1\|2235239_2239322_+	AAA family ATPase	NA	NA	NA	NA
WP_109456049.1\|2240002_2240893_+\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
2255260:2255282	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LS398550

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection