CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_LT960791	Lactobacillus sakei strain J54 plasmid 2, complete sequence	0 crisprs	NA	0	1
NZ_LT960792	Lactobacillus sakei strain J54 plasmid 3, complete sequence	0 crisprs	NA	0	0
NZ_LT960790	Lactobacillus sakei strain J54 chromosome 1	2 crisprs	csa3,cas3,DEDDh,DinG,csn2,cas2,cas9	24	6

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17830 : 27146

Enterococcus_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025016512.1\|17830_19978_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.0e-254	60.2
WP_099947557.1\|20084_21011_+	ribonucleotide-diphosphate reductase subunit beta	A0A2H4P8A9	Corynebacterium_phage	2.2e-36	31.7
WP_016265840.1\|21025_21976_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	3.2e-99	55.0
WP_025016529.1\|22314_23490_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	8.2e-28	29.2
WP_099947558.1\|23601_24051_+	DUF305 domain-containing protein	A0A1V0SJW0	Klosneuvirus	2.0e-06	33.1
WP_025016531.1\|24108_24669_-	hypothetical protein	NA	NA	NA	NA
WP_003587210.1\|25129_25597_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_011373852.1\|26225_27146_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LT960790

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT960790_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT960790_1

1149842-1151790

TypeII

Consensus_repeat	Method
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	CRISPRCasFinder
ACTCATTGATTTGATACTCTTCTAAAAC	CRT
CAGTTGAACTACTCATTGATTTGATACTCTTCTAAAACA	PILER-CR
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	PILER-CR
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	PILER-CR

29 spacers

csn2,cas2,cas9

The CRISPR arrays of NZ_LT960790_1

>merge|NZ_LT960790|1|1149842-1151790|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
ATCGAACTGCTCATTGATTTGATACTCTTCTAAAACAAACCACTTTGTAAAATCTTCTTGAACCGTGTTGAACTAATCATTGATTTGATACTCTTCTAAAACTGCGAAAGGCGGCGAGATTAATCCTGAACAGTTGAACTACTCATTGATTTGATACTCTTCTAAAACATCATCCTAACTGACCCATCAAACTGTTCAGTTGAACTACTCATTGATTTGATACTCTTCTAAAACACCCAACGTCGCCAGTTAAATGATAGTAGGGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTAACCTTGTAACCAGCGTTATTCTGTAAACGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTAGCGGTGAGAAAATAACAATTAATTCTGTGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTGTTCACCGGTTTAAAAAATCCCATTTAATGTTGAACTACTCATTGATTTGATACTCTTCTAAAACATAGTTGCGTTCGCTAGACTTATAGGCCTTGTTGAACTACTCATTGATTTGATACTCTTCTAAAACAATGGAATAGTTTAATTTGGGATGATAAAAGTTGAACTACTCATTGATTTGATACTCTTCTAAAACCATTATCGAGATTTTAACAAAGATATTAAAGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTAGCGCGAAAGTGTGTCTATTATTGCGCGTGTTGAACTACTCATTGATTTGATACTCTTCTAAAACGGACAATTTGGACTTACACCGATAACACCAGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTTACTGTAATGCCAAGTCAAACGTTAGATTGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTAAGCACCGCCTGGACAAGGTTGAAGCACAGTTGAACTACTCATTGATTTGATACTCTTCTAAAACACGTCTTTAAACGGTTACCCGTAGTATTCAGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTATAATCTGTTGTTAAAAATGCCATTGTTAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTTATGACAATCCAATTAAACAAATGTTTGTGTTGAACCACTCATTGATTTGATACTCTTCTAAAACAAAGCTCATTATAGTCTACAAACGAAGTAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTACGATAATACCCGCCAAACCGGTCTAACAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACAATCGTGCTTATCAGCGTTGTTGTTGCGCTGTTGAACCACTCATTGATTTGATACTCTTCTAAAACAAGAAGAAGTTGCTAAAAAGGTCGACGTAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACATATACGTTCTTCTTCCAACATGTGAGCATGTTGAACCACTCATTGATTTGATACTCTTCTAAAACGTGCTCATAAGCCTCTAAAAACTCAACCAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTACATCACGCATCACTCCGATCTGTGTAATGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTCCTTTTGCGTGCAAGATCCTTATTGGCACGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTAAAGAAGCTTACGATGGATTAGACCCCAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTAGCTTTTAACGGCTTCAATGCTTGGCCAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTATAAGTAATAGTACACTATCGCTTGGATAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACCTCGCAAGCTGATTATGACGCATTGGCTGAGTTGAACCACTCATTGATTTGATACTCTTCTAAAAC

>NZ_LT960790|1|1|1149842-1151790|CRISPRCasFinder
ATCGAACTGCTCATTGATTTGATACTCTTCTAAAAC	AAACCACTTTGTAAAATCTTCTTGAACCGT
GTTGAACTAATCATTGATTTGATACTCTTCTAAAAC	TGCGAAAGGCGGCGAGATTAATCCTGAACA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ATCATCCTAACTGACCCATCAAACTGTTCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ACCCAACGTCGCCAGTTAAATGATAGTAGG
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAACCTTGTAACCAGCGTTATTCTGTAAAC
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAGCGGTGAGAAAATAACAATTAATTCTGT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TGTTCACCGGTTTAAAAAATCCCATTTAAT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ATAGTTGCGTTCGCTAGACTTATAGGCCTT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	AATGGAATAGTTTAATTTGGGATGATAAAA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	CATTATCGAGATTTTAACAAAGATATTAAA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAGCGCGAAAGTGTGTCTATTATTGCGCGT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	GGACAATTTGGACTTACACCGATAACACCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TTACTGTAATGCCAAGTCAAACGTTAGATT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAAGCACCGCCTGGACAAGGTTGAAGCACA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ACGTCTTTAAACGGTTACCCGTAGTATTCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TATAATCTGTTGTTAAAAATGCCATTGTTA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TTATGACAATCCAATTAAACAAATGTTTGT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AAAGCTCATTATAGTCTACAAACGAAGTAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TACGATAATACCCGCCAAACCGGTCTAACA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AATCGTGCTTATCAGCGTTGTTGTTGCGCT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AAGAAGAAGTTGCTAAAAAGGTCGACGTAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	ATATACGTTCTTCTTCCAACATGTGAGCAT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	GTGCTCATAAGCCTCTAAAAACTCAACCAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TACATCACGCATCACTCCGATCTGTGTAAT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TCCTTTTGCGTGCAAGATCCTTATTGGCAC
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TAAAGAAGCTTACGATGGATTAGACCCCA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TAGCTTTTAACGGCTTCAATGCTTGGCCAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TATAAGTAATAGTACACTATCGCTTGGATA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	CTCGCAAGCTGATTATGACGCATTGGCTGA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC

>NZ_LT960790|1|1|1149850-1151790|CRT
GCTCATTGATTTGATACTCTTCTAAAAC	AAACCACTTTGTAAAATCTTCTTGAACCGTGTTGAACT
AATCATTGATTTGATACTCTTCTAAAAC	TGCGAAAGGCGGCGAGATTAATCCTGAACAGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	ATCATCCTAACTGACCCATCAAACTGTTCAGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	ACCCAACGTCGCCAGTTAAATGATAGTAGGGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	TAACCTTGTAACCAGCGTTATTCTGTAAACGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	TAGCGGTGAGAAAATAACAATTAATTCTGTGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	TGTTCACCGGTTTAAAAAATCCCATTTAATGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	ATAGTTGCGTTCGCTAGACTTATAGGCCTTGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	AATGGAATAGTTTAATTTGGGATGATAAAAGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	CATTATCGAGATTTTAACAAAGATATTAAAGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	TAGCGCGAAAGTGTGTCTATTATTGCGCGTGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	GGACAATTTGGACTTACACCGATAACACCAGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	TTACTGTAATGCCAAGTCAAACGTTAGATTGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	TAAGCACCGCCTGGACAAGGTTGAAGCACAGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	ACGTCTTTAAACGGTTACCCGTAGTATTCAGTTGAACT
ACTCATTGATTTGATACTCTTCTAAAAC	TATAATCTGTTGTTAAAAATGCCATTGTTAGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	TTATGACAATCCAATTAAACAAATGTTTGTGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	AAAGCTCATTATAGTCTACAAACGAAGTAAGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	TACGATAATACCCGCCAAACCGGTCTAACAGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	AATCGTGCTTATCAGCGTTGTTGTTGCGCTGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	AAGAAGAAGTTGCTAAAAAGGTCGACGTAAGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	ATATACGTTCTTCTTCCAACATGTGAGCATGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	GTGCTCATAAGCCTCTAAAAACTCAACCAAGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	TACATCACGCATCACTCCGATCTGTGTAATGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	TCCTTTTGCGTGCAAGATCCTTATTGGCACGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	TAAAGAAGCTTACGATGGATTAGACCCCAGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	TAGCTTTTAACGGCTTCAATGCTTGGCCAAGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	TATAAGTAATAGTACACTATCGCTTGGATAGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC	CTCGCAAGCTGATTATGACGCATTGGCTGAGTTGAACC
ACTCATTGATTTGATACTCTTCTAAAAC

>NZ_LT960790|1|1|1149908-1150076|PILER-CR
GTTGAACTAATCATTGATTTGATACTCTTCTAAAACTGC	GAAAGGCGGCGAGATTAATCCTGAACA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAACATC	ATCCTAACTGACCCATCAAACTGTTCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAACACCCAACGTCGCCAGTTAAATGATAGTAGGGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTAACCTTGTAACCAGCGTTATTCTGTAAACGTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAGCGGTGAGAAAATAACAATTAATTCTGT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TGTTCACCGGTTTAAAAAATCCCATTTAAT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ATAGTTGCGTTCGCTAGACTTATAGGCCTT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	AATGGAATAGTTTAATTTGGGATGATAAAA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	CATTATCGAGATTTTAACAAAGATATTAAA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAGCGCGAAAGTGTGTCTATTATTGCGCGT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	GGACAATTTGGACTTACACCGATAACACCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TTACTGTAATGCCAAGTCAAACGTTAGATT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAAGCACCGCCTGGACAAGGTTGAAGCACA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ACGTCTTTAAACGGTTACCCGTAGTATTCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TATAATCTGTTGTTAAAAATGCCATTGTTA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TTATGACAATCCAATTAAACAAATGTTTGT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AAAGCTCATTATAGTCTACAAACGAAGTAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TACGATAATACCCGCCAAACCGGTCTAACA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AATCGTGCTTATCAGCGTTGTTGTTGCGCT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AAGAAGAAGTTGCTAAAAAGGTCGACGTAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACATATACGTTCTTCTTCCAACATGTGAGCATGTTGAACCACTCATTGATTTGATACTCTTCTAAAACGTGCTCATAAGCCTCTAAAAACTCAACCAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTACATCACGCATCACTCCGATCTGTGTAATGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTCCTTTTGCGTGCAAGATCCTTATTGGCACGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTAAAGAAGCTTACGATGGATTAGACCCCAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTAGCTTTTAACGGCTTCAATGCTTGGCCAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTATAAGTAATAGTACACTATCGCTTGGATAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACCTCGCAAGCTGATTATGACGCATTGGCTGA
	ATATACGTTCTTCTTCCAACATGTGAGCAT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	GTGCTCATAAGCCTCTAAAAACTCAACCAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TACATCACGCATCACTCCGATCTGTGTAAT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TCCTTTTGCGTGCAAGATCCTTATTGGCAC
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TAAAGAAGCTTACGATGGATTAGACCCCA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TAGCTTTTAACGGCTTCAATGCTTGGCCAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TATAAGTAATAGTACACTATCGCTTGGATA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	CTCGCAAGCTGATTATGACGCATTGGCTGA


>NZ_LT960790|1|2|1150172-1151790|PILER-CR
	GAAAGGCGGCGAGATTAATCCTGAACA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAACATC	ATCCTAACTGACCCATCAAACTGTTCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAACACCCAACGTCGCCAGTTAAATGATAGTAGGGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTAACCTTGTAACCAGCGTTATTCTGTAAACGTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAGCGGTGAGAAAATAACAATTAATTCTGT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TGTTCACCGGTTTAAAAAATCCCATTTAAT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ATAGTTGCGTTCGCTAGACTTATAGGCCTT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	AATGGAATAGTTTAATTTGGGATGATAAAA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	CATTATCGAGATTTTAACAAAGATATTAAA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAGCGCGAAAGTGTGTCTATTATTGCGCGT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	GGACAATTTGGACTTACACCGATAACACCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TTACTGTAATGCCAAGTCAAACGTTAGATT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAAGCACCGCCTGGACAAGGTTGAAGCACA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ACGTCTTTAAACGGTTACCCGTAGTATTCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TATAATCTGTTGTTAAAAATGCCATTGTTA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TTATGACAATCCAATTAAACAAATGTTTGT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AAAGCTCATTATAGTCTACAAACGAAGTAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TACGATAATACCCGCCAAACCGGTCTAACA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AATCGTGCTTATCAGCGTTGTTGTTGCGCT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AAGAAGAAGTTGCTAAAAAGGTCGACGTAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACATATACGTTCTTCTTCCAACATGTGAGCATGTTGAACCACTCATTGATTTGATACTCTTCTAAAACGTGCTCATAAGCCTCTAAAAACTCAACCAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTACATCACGCATCACTCCGATCTGTGTAATGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTCCTTTTGCGTGCAAGATCCTTATTGGCACGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTAAAGAAGCTTACGATGGATTAGACCCCAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTAGCTTTTAACGGCTTCAATGCTTGGCCAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTATAAGTAATAGTACACTATCGCTTGGATAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACCTCGCAAGCTGATTATGACGCATTGGCTGA
	ATATACGTTCTTCTTCCAACATGTGAGCAT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	GTGCTCATAAGCCTCTAAAAACTCAACCAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TACATCACGCATCACTCCGATCTGTGTAAT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TCCTTTTGCGTGCAAGATCCTTATTGGCAC
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TAAAGAAGCTTACGATGGATTAGACCCCA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TAGCTTTTAACGGCTTCAATGCTTGGCCAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TATAAGTAATAGTACACTATCGCTTGGATA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	CTCGCAAGCTGATTATGACGCATTGGCTGA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC

>NZ_LT960790|1|3|1151228-1151790|PILER-CR
	GAAAGGCGGCGAGATTAATCCTGAACA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAACATC	ATCCTAACTGACCCATCAAACTGTTCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAACACCCAACGTCGCCAGTTAAATGATAGTAGGGTTGAACTACTCATTGATTTGATACTCTTCTAAAACTAACCTTGTAACCAGCGTTATTCTGTAAACGTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAGCGGTGAGAAAATAACAATTAATTCTGT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TGTTCACCGGTTTAAAAAATCCCATTTAAT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ATAGTTGCGTTCGCTAGACTTATAGGCCTT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	AATGGAATAGTTTAATTTGGGATGATAAAA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	CATTATCGAGATTTTAACAAAGATATTAAA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAGCGCGAAAGTGTGTCTATTATTGCGCGT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	GGACAATTTGGACTTACACCGATAACACCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TTACTGTAATGCCAAGTCAAACGTTAGATT
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TAAGCACCGCCTGGACAAGGTTGAAGCACA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	ACGTCTTTAAACGGTTACCCGTAGTATTCA
GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC	TATAATCTGTTGTTAAAAATGCCATTGTTA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TTATGACAATCCAATTAAACAAATGTTTGT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AAAGCTCATTATAGTCTACAAACGAAGTAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TACGATAATACCCGCCAAACCGGTCTAACA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AATCGTGCTTATCAGCGTTGTTGTTGCGCT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	AAGAAGAAGTTGCTAAAAAGGTCGACGTAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACATATACGTTCTTCTTCCAACATGTGAGCATGTTGAACCACTCATTGATTTGATACTCTTCTAAAACGTGCTCATAAGCCTCTAAAAACTCAACCAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTACATCACGCATCACTCCGATCTGTGTAATGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTCCTTTTGCGTGCAAGATCCTTATTGGCACGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTAAAGAAGCTTACGATGGATTAGACCCCAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTAGCTTTTAACGGCTTCAATGCTTGGCCAAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACTATAAGTAATAGTACACTATCGCTTGGATAGTTGAACCACTCATTGATTTGATACTCTTCTAAAACCTCGCAAGCTGATTATGACGCATTGGCTGA
	ATATACGTTCTTCTTCCAACATGTGAGCAT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	GTGCTCATAAGCCTCTAAAAACTCAACCAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TACATCACGCATCACTCCGATCTGTGTAAT
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TCCTTTTGCGTGCAAGATCCTTATTGGCAC
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TAAAGAAGCTTACGATGGATTAGACCCCA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TAGCTTTTAACGGCTTCAATGCTTGGCCAA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	TATAAGTAATAGTACACTATCGCTTGGATA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	CTCGCAAGCTGATTATGACGCATTGGCTGA
GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT960790.1\|WP_096584844.1\|1145862_1146351_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NZ_LT960790.1\|WP_099947358.1\|1146337_1147576_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_LT960790.1\|WP_099947359.1\|1153910_1157447_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_LT960790.1\|WP_056947832.1\|1159408_1160224_-\|methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
NZ_LT960790.1\|WP_025016454.1\|1162311_1162620_-\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|133457
NZ_LT960790.1\|WP_099947355.1\|1140130_1141441_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_LT960790.1\|WP_056947810.1\|1151816_1152488_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_LT960790.1\|WP_016265247.1\|1144459_1145863_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_LT960790.1\|WP_076632590.1\|1147553_1148858_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_LT960790.1\|WP_099947357.1\|1143219_1143648_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182510
NZ_LT960790.1\|WP_099947360.1\|1158727_1159294_-\|hypothetical-protein	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_LT960790.1\|WP_016265253.1\|1160925_1161960_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
NZ_LT960790.1\|WP_011374804.1\|1143703_1143991_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT960790.1\|WP_089541951.1\|1157564_1158617_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_LT960790.1\|WP_011374802.1\|1142520_1142871_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NZ_LT960790.1\|WP_076648253.1\|1152484_1152805_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_LT960790.1\|WP_011374812.1\|1148870_1149653_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_LT960790.1\|WP_056947839.1\|1160243_1160933_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_LT960790.1\|WP_056946720.1\|1144175_1144382_+\|DUF378-domain-containing-protein	unknown	unknown	gnl\|CDD\|377214
NZ_LT960790.1\|WP_056947845.1\|1162638_1163838_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843

Protein	Function_ID	Function_description	E-value
NZ_LT960790.1\|WP_096584844.1\|1145862_1146351_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.67946e-61
NZ_LT960790.1\|WP_099947358.1\|1146337_1147576_-\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_LT960790.1\|WP_099947359.1\|1153910_1157447_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	9.83827e-144
NZ_LT960790.1\|WP_056947832.1\|1159408_1160224_-\|methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	4.07948e-100
NZ_LT960790.1\|WP_025016454.1\|1162311_1162620_-\|glycine-cleavage-system-protein-H	gnl\|CDD\|133457	cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.	8.00756e-29
NZ_LT960790.1\|WP_099947355.1\|1140130_1141441_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	1.58204e-109
NZ_LT960790.1\|WP_056947810.1\|1151816_1152488_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	6.063e-85
NZ_LT960790.1\|WP_016265247.1\|1144459_1145863_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_LT960790.1\|WP_076632590.1\|1147553_1148858_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	4.10047e-116
NZ_LT960790.1\|WP_099947357.1\|1143219_1143648_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182510	PRK10514, PRK10514, putative acetyltransferase; Provisional.	4.93752e-27
NZ_LT960790.1\|WP_099947360.1\|1158727_1159294_-\|hypothetical-protein	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	6.57347e-28
NZ_LT960790.1\|WP_016265253.1\|1160925_1161960_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	1.91746e-153
NZ_LT960790.1\|WP_089541951.1\|1157564_1158617_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	3.84192e-68
NZ_LT960790.1\|WP_011374802.1\|1142520_1142871_-\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	5.52642e-29
NZ_LT960790.1\|WP_076648253.1\|1152484_1152805_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.7781e-28
NZ_LT960790.1\|WP_011374812.1\|1148870_1149653_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.03617e-138
NZ_LT960790.1\|WP_056947839.1\|1160243_1160933_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	3.48727e-89
NZ_LT960790.1\|WP_056946720.1\|1144175_1144382_+\|DUF378-domain-containing-protein	gnl\|CDD\|377214	pfam04070, DUF378, Domain of unknown function (DUF378). Predicted transmembrane domain of unknown function. The majority of the family have two predicted transmembrane regions.	2.26591e-22
NZ_LT960790.1\|WP_056947845.1\|1162638_1163838_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	4.50052e-96

>NZ_LT960790.1|WP_011374812.1|1148870_1149653_-|Fe-S-cluster-assembly-ATPase-SufC
MSKLEIIDLHVGIDGKEILKGVNLEMNTGEIHAIMGPNGTGKSTLSETIMGNPKYEVLQGEIKLDGQNILEMPVDERARAGLFLAMQYPSEIQGVTNAEFMRAAINARRAEDDQISIMAFLKKLDQRMAVLDMTEEMSERYLNEGFSGGEKKRNEILQLMMIEPKFAILDEIDSGLDIDALQVVSKGVNEMRGDNFGSLIITHYQRLLNYIVPDFVHIMMGGKIVTTGDASLAKRLEDEGYAGIRDELGLDIKLTDDESK
>NZ_LT960790.1|WP_076632590.1|1147553_1148858_-|Fe-S-cluster-assembly-protein-SufD
MKKKLAITPEQVAAFSIAHQEPDWFAALRQTALGQIEKLDLPIFEKINYKHWPIMAASAPTLTTSATDTLPEMVADLTADQPYVVQVGQTIAKLNLPSELAEQGVIFTDIFTALQDYPELVHEYYMQVTVKPDEDRLTAFHTALMNSGMFLYVPKNVVIKQPITAYYVQDSTQATDFIHHVLIVAEQNSEFSYLENLQTMGDHKNLANMVVEVIAKDNSHVHFSAVDAFGKSVTTYLNRRGHLMRDARIDWALGFMNDGNIIGDFDSDLVGDGSHAETKVVAISTGKQIQGIDTRVTNIGPRSIGHILQHGVILEDATLTFNGIGHIIKGAKGADAQQENRVLMLSRTARGDANPLLLIDENDVQAGHAASVGRVNEQQMYYLMSRGLSKEVAQRLVIRGFLGAVLTEIPDKNVRQQLTDTIERKLIDGQKSEH
>NZ_LT960790.1|WP_099947358.1|1146337_1147576_-|cysteine-desulfurase
MGKSLNTSRQDFPILEQLVNDEPLVYLDNAATTQKPQAVIDQIVSYYQHDNANVHRGVHTLAERATAQYEAARVKVQQFINAASSAEIVFTKGTTQSLNWIAGSFGPTVVQAGDEIVISYMEHHSNLVPWQQLAKKTGAKLRYIDLLPDGQLDLDAAKQVIGPRTKIVSLVHASNVLGVVNPVKTIAALVHVQGGYMVVDGAQAVPHMPVDVQALDADFYAFSGHKMLGPTGIGVLYGKQALLEQLSPVEYGGEMIDFVGLQESTFKELPWRLEGGTPNIAGAIGLGAAIDYLNQIGMTNIQAHEQALVAEALPALQAIDGLTIYGPQEASQRTGVIAFNLDNLHPHDLATALDMEGVAVRAGHHCAQPLMQWLNVVATARASFYLYNTSEDVQALVAAIQAAKEFFQNGTL
>NZ_LT960790.1|WP_096584844.1|1145862_1146351_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MALSKLDNLYRQVILDHSQHPHHHGHLDTVDHEIELRNPTCGDVLQLEIALEDNRISQIAFSGEGCTISQASASMMTDAVLHKTPAEAEVMIERFSDMVIGDRDEDWTILEDAAILQGIQQFPARIKCATLAWKALHKALNSDTNTATTGQIVNHAETEGTD
>NZ_LT960790.1|WP_016265247.1|1144459_1145863_-|Fe-S-cluster-assembly-protein-SufB
MTEETTMPQFENYDYGFSDDVEPVFSTGRGLTEDVVRAISHEKKEPQWMLDFRLKSFHAYEKMPMPDFGPDLSGLDLEHMLYYQKATDKQYRDWEDVPDKIKDTFDRLGVPEAERKYLAGSSAQYESEVVYHNMRDEFEKLGIIFTDMDTALREYPDIVKEYFSTLVKPTDNKFSALNSAVWSGGTFIYVPKGVRTDIPIQSYFRINAENSGQFERTLIVVDEGASVNYVEGCTAPSYSSDSLHAAVVEVFVKRDAYCRYTTIQNWSKNVYSLETKRAQAMENATMEWVDGNLGSKMTMKYPSVYLDGEGARGTMLSIAVAGEGVDQDSGARMIHAAPNTSSSIVSKSIAKDGGAVDYRGTVRFERDSDGSFAHVECDTIIMDDKSSSDTIPYNTILNGNVSMEHEAKVSKISEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLISYEMEGSVG
>NZ_LT960790.1|WP_056946720.1|1144175_1144382_+|DUF378-domain-containing-protein
MKTLDNIALTLLIVGGLNWLLVGLFKFDLVAMLFGGQAAIISRIVYVLVGLSALYCIKLFANINNMAR
>NZ_LT960790.1|WP_011374804.1|1143703_1143991_-|hypothetical-protein
MKQFEPARINDQYSLTLNETGNVMLSKVGVGIVGQMSYYYTRNDLPLFICRHEPRADLKTIHDVMVQLDAQLAEMVGCGCLMVGGQNVAQQCKMV
>NZ_LT960790.1|WP_099947357.1|1143219_1143648_+|GNAT-family-N-acetyltransferase
MLLNQLATTSDYALVPDIWERSVLATHNFLQPEDVTFYKTQIPHFLAQTVLRIWSLDNQPIGFSGTNGQELEMLFLDPHYIGGGYGHQILDWLINNQQINKIDVNEQNQRAKAFYLKHGFTVASRSQRDSFDKPYPILHLTR
>NZ_LT960790.1|WP_011374802.1|1142520_1142871_-|dihydroneopterin-aldolase
MYHIKINNMQFHSHIGVFQAEKDLGQRIEIDLKVAIMTPYQGDELTDTVSYADFYEVIAQLIAKSRANLVETIAHEIIQAIHALDPDRIGSVAVKVRKIAVPIEGIFDHVEIEMEG
>NZ_LT960790.1|WP_099947355.1|1140130_1141441_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MQDEEMVTQLPGMLYGEDERVTLLRQILKAMGQPDHAFSIIHVCGTNGKGSTSAMIAAILQASGYSVGLFTSPHIMAVEESIQINRQLISKAQFERLLATVQTVLKKLGFDPTTDLSYFETLVLVALVYFKQQQVDYVLWECGLGGELDATNAVDRVAYTLFTKISLDHMALLGDTIEAIATTKSKIIRPQTPVIVAPEQTKTALHVLEAEAKRQSALLQIAPRDWFVTSHPTSAGQEVTVKLPEREPLTVSLALAGTSYQLENLLTVLTWYRQFCRDQGHAVDEIVLQRALGQVRLPGRFERLATEPLVVIDGAHNPDGIRQFVRSVQERYGGYDLTIVTGFLKDKAVAECLQLLTQLPARFILTTPINQDDRQLPVAELGALYTQITGQTAPEYPAIEAALKAASQPATGNKPQVILVVGSFYLLKTVRQHFLS
>NZ_LT960790.1|WP_056947810.1|1151816_1152488_-|type-II-A-CRISPR-associated-protein-Csn2
MNITYYPYEPFKVNNSKITILSTSSPSVYTKLIAGASGQDDTLHLSDDHYRLLEYIKGMIWIGEISAVDLNHLFQNKLIKKFTADLTDEQRQKVVNLNNELRATILEAAFMYELALDIDHELDLQKLIKFCNLKFSNDVQDDPYGIIESIVQTAIELQETRIITLINVSHYLSINQFNELVRLVATLDVKLFIIEFSELATPDRYQECCYYHIDNDYVEWRYE
>NZ_LT960790.1|WP_076648253.1|1152484_1152805_-|CRISPR-associated-endonuclease-Cas2
MRYRIMRLLVMFDLPTETSEDRKAYRHFRKALLNEGFLMIQYSVYVRVCVSKQSAQYIENRIAGYTPAAGLVQTLMVTEQQYNKMHFLVGKSSDDIRNSAERTLIL
>NZ_LT960790.1|WP_099947359.1|1153910_1157447_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MFQLAVNDFDDLKALLLNDQQSASNRQKKALGMIYVPNENKSLEKQNKAIATELLKAILGLKAKFNVLTGIEVDDAKPWTLSFNSESFDEDIDKAATNIDDDSREIIAILQGLYSGILLAGIIPENQSLSEAMVEKYDQHAAHLKQLKSIYPLLSISDKKAIQQAYNYYIDGQDNAKAYSREDFYAATTKALKSYQDNETIAEILKLIELEQFMPKQRTKDNGAIPHQLHQQELERIIENQQKYYPWLAELNPNESRRKIAKYKLDELVAFRVPYYVGPLITSEQQQQSSNKKFAWMIRKAEGKITPWNFDEKVDRQASANEFIKRMTTTDTYLLAEDVLPKQSLVYQRFEVLNELNGIKIDDVPITVEQKQRIFNDLFMMQASVSVKNIQDYLVSKGYFASRPEITGLSDENKVISRLSTYHDLKAILGGIVDEANKQADLEKCVEWSTIFEDGKIFVEKLNEIEWLTDEQRKRLSSKRYRGWGRLSNKLLNQIVNENGQRIMDLLWDTTDNFMRIVHSEEFDKLISAANQTLLSKNDVQDVINDLYTSPQNKKALRQILLVVSDIQKAMKNQAPSKILIEFAREDEANPRLSVQRKRQVEQVYQNISKDILSDSDVKAELKDLTNTALANTRLFLYFMQGGHDMYTGETLNIDRLSEYDIDHILPQAFIKDNSLDNRVLVSAKMNRSKSDQVPLNDYTEERFGSKMRVQWEQMLRAGLITKRKYDNLTLNPDRISKYAMKGFINRQLVETRQVIKLVTNLLMDHYEDDEVQLITVKSGLIHQMREMFDFPKNRNLNNHHHAFDAYLTAFVGIYLLKRYPKLTPFFVYGSYQKNNTNDKWRNFNFLNDLKKEEVIDSDSHEVIWNKAQGLAELDKIYQFKKILVTREVHENTGALYNQTLYSAKDDKASGQGGKQLIPAKQDRPTALYGGYSGKTVAYMCIVRIKSKKEDTYKVCGVKTSWVAELERLSDSNEQLASLKAKLMPKFTKNKKQKGKTIQVTEDFEIIVPRVLINQRFYDNGQEITLGSATYKHNEQELMLNKKAVKLLNGQLSLVEAETLAPQVYDEILKQVMKYFPLYDTNQFRTKLKMGKEQFIKLPWKNKWDGNKLIHVGQQTVLDRILIGLHANAAVSDLSTLKVTTPFGKLQQPSGIALSLNTKIIYQSPTGLFERRVALRGL
>NZ_LT960790.1|WP_089541951.1|1157564_1158617_-|IS30-family-transposase
MQKQDTTHRQKGQHLTSLERGKVAGFRQAGKSNRWIAAEIGVCPQTINNEIKRGTVDQVKKSNGKRVYHRQYLPEAAQARYETARLSCHRPDKFASVQVFLAWYVQRAKQDKWSPDASIGYAKRHKLFTPEELVCASTLYQYIDDQRLEIRNIDLLEKTKRKTSHQHHTKAKRLAGRSIEERPKVVERRRQFGHWEMDTIVGKRNGKESVILTLIERKTRCQLLRLIEGRDADSVSYALRGIKREWGACIKTITADNGPEFTALNTAFAGTETEIFYAHPYTSCDRGTNEAHNRMIRQDFPKGMSLDDISPSQVQATQDRLNQLPRKQQGYCTPQQNFEAEARRVRRMAQ
>NZ_LT960790.1|WP_099947360.1|1158727_1159294_-|hypothetical-protein
MAKTYNIGLDIGTNSIGWAVVDDQNHLMSIKGKYGYGVRLYDEGKTAEERRSFRTTRRRLKRRKWRLSLLREIFEPQITPLDNTFFLRQKQSSLSSKDNRKLYPEMSLFNDRTDTDFYTQYPTIYNLSRDLMTKNKQFDIREIYLAMHHIVKYRGHFLNESPVSSFKSSEIKLAENFETLNQIFNRAF
>NZ_LT960790.1|WP_056947832.1|1159408_1160224_-|methionine-ABC-transporter-substrate-binding-protein
MQKRYLSVLAGLLIVGVLLTGCRAKKTDPNTIVIGASTIPHAAILRHIKPELKKEGITLDVKAFSDYVLPNKALASGELTANYYQHIPFMKKANHDNGYHLVSAGGIHLEPLGLYSKRVKKLSAVKTGATVLVSNSQTDWGRVLSILKTGGLITLKPGVKVENATFNDIAKNPKKLKFKYTFEPKLMPELLKNDEGTLVAINSNYAVQAGFTPEKDAVAIESLSSPYVNVVAVNKGDENKPAIKKLIKALKSKSTQAWIKKQWHGAVLPVK
>NZ_LT960790.1|WP_056947839.1|1160243_1160933_-|ABC-transporter-permease
MANINGFQSYFQFKQIDWPTMWEATVETVWLTAVSVLLVAILGFLLGLVLYQTNGKMDFMSRLLNGIVALFVNVFRSVPFIILIVLLIPMTKELMGTMIGPKAAIPALIVSAAPFYARLVELAFREVDSGVIEATRALGASKWQIIWQVLLPESMPALVSGLTVTAISLLGYTAMAGVIGAGGLGNLAYTEGFQANQNTITLVATIIILIIVFICQKAGDIIIAKIDHR
>NZ_LT960790.1|WP_016265253.1|1160925_1161960_-|methionine-ABC-transporter-ATP-binding-protein
MLELKQVGKVYQREQQTFTALSDISLKIEAGEIYGIIGYSGAGKSTLIRLLNGLEKPTSGDVLVNGQSIVGLSEQAMRPIRQKIGMIFQHFNLLWSKTILENIALPLKLAGVGKKERLAKAKEMLALVELTDLGAAYPSELSGGQKQRVAIARALISEPAILLCDEATSALDPKTTNSILSLLAKINQEMGITIVLVTHEMDAVRRICQRIAVMAAGRVIEEGTTQAIFETPQAEVTKAFVSESLVITPSETAASIEQLLTRVPEGTIVKLRFNEEQSSQPVIGQLMRRYPSVEVSVISGSLQQTINGALGYLYIQIQASPDDLKQALSDLSQQTIEVEVLRHG
>NZ_LT960790.1|WP_025016454.1|1162311_1162620_-|glycine-cleavage-system-protein-H
MSNNDYFWTEEIAASIRRIGLTKGAQNEFGLIKFVDVPVEGQKMALDMPLVAIEAEKMVQELDSPLAGELVNVNTDLADNPELLNADNEKDAWIADIRISDN
>NZ_LT960790.1|WP_056947845.1|1162638_1163838_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MPKELEKVDDTSRVDYGIVFSVFMLALVGLMSIYVAVTHDTSSASSTRAVLMQAAWYVIGGIAIVAIMQFDSEQLWRVAPIAYGIGIFLLVAVLFFYNRVVAIQTGAKSWFSLGPISFQPSEVMKPAYILMMSRVVTKHNTEYPEHTINADWLLLGRLLIWTLPVMVLLKLQNDFGTLLVFVAILGGIILVSGITWKILAPAMAIMAAIGGTALTLAVTTPGRAILTHLGFKTYQFNRIDAWLHPFDNTASTSLQLSQSLKAIGSGQLFGKGFNQIQVNVPVRESDMIFSVIGENFGFIGSCLVILLYFLLIYQMIRVTFDTKNEFYAYVSTGVIMMILFHVFENIGMSVGLLPLTGIPLPFISQGGSSLLGNMMGIGFIMSMRYHYKSYMFSESEDTF

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Crispr_ID: NZ_LT960790_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT960790_2

1937205-1937702

Orphan

Consensus_repeat	Method
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	CRISPRCasFinder
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	CRT
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	PILER-CR

7 spacers

The CRISPR arrays of NZ_LT960790_2

>merge|NZ_LT960790|2|1937205-1937702|CRISPRCasFinder,CRT,PILER-CR
ACCAGTGTTTCCTTCAACATTCGGTTAAGATGAAATTGAAGCTTCCCATCTTTACCAAGCAATTGAGCTATTGTTTCCTTCAACATTCGGTTAAGATGAAATTTAAGCGGTAATGTGCCAGTAGCAGTTGTTGCTATTGTTTCCTTTAACATTCGGTTAAGATGAAATTCACCTATGAAGATTGTCCATAAGCGGACAGCTATTGTTTCCTTCAACATTCGGTTAAGATGAAATTAATCAGGGTCAATCGAACGTTCAGGTTGGGCTATTGTTTCCTTCAACATTCGGTTAAGATGAAATAAAAGAAATCTACTCCCTAACTGACTTAGTGCTATTGTTTCCTTCAACATTCGGTTAAGATGAAATACATTAACAATTATGTATTAGTTGCGCCAAGCTATTGTTTCCTTCAACATTCGGTTAAGATGAAATGGCATTTAATGTTGAGACACAGTTTTCGCTGCTATTGTTTCCTTCAACATTCGGTTAAGATGGGCT

>NZ_LT960790|2|2|1937205-1937702|CRISPRCasFinder
ACCAGTGTTTCCTTCAACATTCGGTTAAGATGAAAT	TGAAGCTTCCCATCTTTACCAAGCAATTGA
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	TTAAGCGGTAATGTGCCAGTAGCAGTTGTT
GCTATTGTTTCCTTTAACATTCGGTTAAGATGAAAT	TCACCTATGAAGATTGTCCATAAGCGGACA
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	TAATCAGGGTCAATCGAACGTTCAGGTTGG
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	AAAAGAAATCTACTCCCTAACTGACTTAGT
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	ACATTAACAATTATGTATTAGTTGCGCCAA
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	GGCATTTAATGTTGAGACACAGTTTTCGCT
GCTATTGTTTCCTTCAACATTCGGTTAAGATGGGCT

>NZ_LT960790|2|2|1937205-1937702|CRT
ACCAGTGTTTCCTTCAACATTCGGTTAAGATGAAAT	TGAAGCTTCCCATCTTTACCAAGCAATTGA
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	TTAAGCGGTAATGTGCCAGTAGCAGTTGTT
GCTATTGTTTCCTTTAACATTCGGTTAAGATGAAAT	TCACCTATGAAGATTGTCCATAAGCGGACA
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	TAATCAGGGTCAATCGAACGTTCAGGTTGG
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	AAAAGAAATCTACTCCCTAACTGACTTAGT
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	ACATTAACAATTATGTATTAGTTGCGCCAA
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	GGCATTTAATGTTGAGACACAGTTTTCGCT
GCTATTGTTTCCTTCAACATTCGGTTAAGATGGGCT

>NZ_LT960790|2|4|1937337-1937636|PILER-CR
GCTATTGTTTCCTTTAACATTCGGTTAAGATGAAAT	TCACCTATGAAGATTGTCCATAAGCGGACA
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	TAATCAGGGTCAATCGAACGTTCAGGTTGG
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	AAAAGAAATCTACTCCCTAACTGACTTAGT
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	ACATTAACAATTATGTATTAGTTGCGCCAA
GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT960790.1\|WP_016264305.1\|1954503_1956129_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NZ_LT960790.1\|WP_172952567.1\|1926791_1927553_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_LT960790.1\|WP_011375554.1\|1933919_1934402_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_LT960790.1\|WP_099947520.1\|1930240_1931575_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NZ_LT960790.1\|WP_094365861.1\|1929142_1930081_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_LT960790.1\|WP_099947523.1\|1934571_1935513_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176191
NZ_LT960790.1\|WP_099947527.1\|1941149_1941422_-\|DUF1788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378040
NZ_LT960790.1\|WP_099947524.1\|1935509_1936196_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_LT960790.1\|WP_099947529.1\|1943029_1943623_-\|DUF1819-family-protein	unknown	unknown	gnl\|CDD\|378066
NZ_LT960790.1\|WP_099947528.1\|1942604_1943033_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378040
NZ_LT960790.1\|WP_099947522.1\|1933246_1933834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT960790.1\|WP_099947521.1\|1931612_1933085_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
NZ_LT960790.1\|WP_016264307.1\|1959723_1960446_-\|protein-jag	unknown	unknown	gnl\|CDD\|224760
NZ_LT960790.1\|WP_099769415.1\|1938145_1939215_-\|IS3-like-element-IS1520-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_LT960790.1\|WP_099947525.1\|1936192_1937035_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223635
NZ_LT960790.1\|WP_056946793.1\|1958176_1959565_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_LT960790.1\|WP_172826499.1\|1927616_1929140_-\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_LT960790.1\|WP_157771040.1\|1939204_1941130_-\|BREX-system-P-loop-protein-BrxC	unknown	unknown	gnl\|CDD\|380283
NZ_LT960790.1\|WP_076632512.1\|1956253_1958146_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_LT960790.1\|WP_099769415.1\|1941438_1942508_+\|IS3-like-element-IS1520-family-transposase	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NZ_LT960790.1\|WP_016264305.1\|1954503_1956129_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_LT960790.1\|WP_011375554.1\|1933919_1934402_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.61043e-12
NZ_LT960790.1\|WP_099947520.1\|1930240_1931575_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	9.17006e-120
NZ_LT960790.1\|WP_094365861.1\|1929142_1930081_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	3.22592e-133
NZ_LT960790.1\|WP_099947523.1\|1934571_1935513_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.54298e-36
NZ_LT960790.1\|WP_099947527.1\|1941149_1941422_-\|DUF1788-domain-containing-protein	gnl\|CDD\|378040	pfam08747, DUF1788, Domain of unknown function (DUF1788). Putative uncharacterized domain in proteins of length around 200 amino acids.	6.31205e-32
NZ_LT960790.1\|WP_099947524.1\|1935509_1936196_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	2.06792e-11
NZ_LT960790.1\|WP_099947529.1\|1943029_1943623_-\|DUF1819-family-protein	gnl\|CDD\|378066	pfam08849, DUF1819, Putative inner membrane protein (DUF1819). These proteins are functionally uncharacterized. Several are annotated as putative inner membrane proteins.	6.7175e-40
NZ_LT960790.1\|WP_099947528.1\|1942604_1943033_-\|hypothetical-protein	gnl\|CDD\|378040	pfam08747, DUF1788, Domain of unknown function (DUF1788). Putative uncharacterized domain in proteins of length around 200 amino acids.	5.71128e-05
NZ_LT960790.1\|WP_172952567.1\|1926791_1927553_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.20274e-35
NZ_LT960790.1\|WP_099947521.1\|1931612_1933085_-\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.13771e-48
NZ_LT960790.1\|WP_016264307.1\|1959723_1960446_-\|protein-jag	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	4.51961e-55
NZ_LT960790.1\|WP_099769415.1\|1938145_1939215_-\|IS3-like-element-IS1520-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.9979e-35
NZ_LT960790.1\|WP_099947525.1\|1936192_1937035_-\|HAD-family-phosphatase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	3.07896e-44
NZ_LT960790.1\|WP_056946793.1\|1958176_1959565_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_LT960790.1\|WP_172826499.1\|1927616_1929140_-\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.03005e-145
NZ_LT960790.1\|WP_157771040.1\|1939204_1941130_-\|BREX-system-P-loop-protein-BrxC	gnl\|CDD\|380283	NF033441, BREX_BrxC, BREX system P-loop protein BrxC. BrxC is a P-loop-containing protein, and probable ATPase, from BREX (bacteriophage exclusion) systems of type 1.	0
NZ_LT960790.1\|WP_076632512.1\|1956253_1958146_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_LT960790.1\|WP_099769415.1\|1941438_1942508_+\|IS3-like-element-IS1520-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.9979e-35

>NZ_LT960790.1|WP_099947525.1|1936192_1937035_-|HAD-family-phosphatase
MGVKMIVVDMDGTFLDQNNQYNQARFARVFQALQARRVKFVVASGSQYQRLQNQFDPYRQSLDFISQNGAIVHHGNDLLRVDALADDDLQALLALIAKGFPAGTIVQKTISGLAQTYVPRQASPETLAIIKQYYHAVTLVDHFDQLTGRSVNDQITKVGITFGPDVDYSQAVQQLRGSLPAGLMSQNSGFQTELIGNVGVDKVSGLRQLQTRYQITDDELMTFGDNENDLGMLTMTPWGFAMPNAYESIKKQSANIALADHNHDGVLTTIEHYLKEGVIG
>NZ_LT960790.1|WP_099947524.1|1935509_1936196_-|TVP38/TMEM64-family-protein
MTAHQQKRLILAVSIILLALIVLLIGWRHQRTVIAFLAQWQDYRQYVLDIRHLGPYAFLVFGLVMVVMTVIPGAPTSAVAMLVGVCLGHWGGFVVNAIGLTLGNLLQVQLLARVRDRRHKKPDSRVYRALVKMRHPAVGVLIGYAVPMIPTAFVNLAAGDTHLTAKAQSWACLAGSTIVAFIYAFAGDLLILKQDWKSLLILLTIAVVIGLAEYGIRMRRDAVVRGTD
>NZ_LT960790.1|WP_099947523.1|1934571_1935513_+|zinc-binding-dehydrogenase
MKAAVVTDFKQDPKFDNQFPTPILNPDEVLINVIASSLSNRARSGAAGSHYTSTDQLPMIPGVDGIGTLPTGEQVYFASEGTFAEQVAVKKGHWVTVPDGLDAIKLAGMMNPALSSWMALNYRANFSAGQKVMILGATGNAGMMAVQIAKRLGASEIIAVALNTEKLKTLTDLGATQLVDLSAEPAQRNAQLAKAGSDVDIVLDYLWGDVAANAMTAIIPHRQNAEQLLQWVEIGSSAGQTAPIPGAGFRAVALSLIGSGQGSVAPIDMMKSLNAILTAEKEQPFTFTTRTLPLSDVEAGWHLPGNERLVFTI
>NZ_LT960790.1|WP_011375554.1|1933919_1934402_-|MarR-family-transcriptional-regulator
MSKLTKLQEMIAKLHAENDQDSERDWLLQHLQANNTPEMMAQAKKLTHSELAILTQLAQAGEAIPFKQLQAQSELSQGMLSRYIQRLAKNRLVEKFHTPENQKAVVLRITARGQEIGELHHQLHQRQRQNYEAVLANYSEAEVETIAQFIEQMIAARENL
>NZ_LT960790.1|WP_099947522.1|1933246_1933834_-|hypothetical-protein
MTKYTAVDSWLYWSIPSDLNDATPEEAILPLFKENYEPGFPSDIDKAALDQKLSAVQYVFIGLNPGDAGPLPELFGNFHGDRKSCDYRLAAITYGTAAWGGFITDLEGSLESDSSKVKVGQANVTALLDHLKDLGIPQSATLIALGSKVYKALEGNLPTGYHLSQLMHYSGMNGHWRFEKERKKVRQIIEAHTAL
>NZ_LT960790.1|WP_099947521.1|1931612_1933085_-|MFS-transporter
MNKKNTLLVTLALLLSNMMAGLDGTIINTALPAIISDLHGIQYMGWIVAVFLLGMAVATPLWSKLGEHIGNRRAYQLATLLFAVSSIFQAVSRNIVFFLIARTVMGIGAGGMNTLPFIIYADLYQDLRKRAQVIGYATASYSAASIVGPLIGGWIVDTFSWHWVFYINVPIALVSILCVRYFFKEQPKTYLSGSVDYLGAGIMITSLVTLLTGIQMIGTGSLTLIIGLIVAGLILLVVLYRVEDRAADPIVPNRLFKNPQLVTDFILFVVLWGAFIAFNIYIPMWAQGLLGLSALLGGMTQIPGAVTNLIGSLAGPAVQPHLGKHRVVTLGTVAFLIAFSGMLMMGDQAPFWFLLLMGAFEGFGLGMSFNVLQISVQEDAETRDVPIATSFAYLLRILSQTFMSSIYGVILNHALTQGIAKSHGQITMAMMNKLSNLQRVHELPAHLLPAMRAIMYQGLHNIMLIATVLLVIVLAFNLWLQGKAKKENVI
>NZ_LT960790.1|WP_099947520.1|1930240_1931575_+|NAD(P)/FAD-dependent-oxidoreductase
MKTHFDTIVIGGGPGGLAAAYRLAEQQSVLVVENDLWGGTCPNRGCDPKKMLYSAVEAIDHQHTLQSSGLVGTSYINWPQLMAFKRQYTTQIPDGTLNGLQSAGIRTVTGTAHFIADHHLRVGETDYTADHFIIATGQTPTLPAIEGRDLLQTSNQFLDLDHLPAKIAFIGAGYIAIELANIAATAGAEVHIIQHNKRILRDFPEAMTTELITSLENKGVQFHFETTVTKVHETTKGLVLNNPEGFTLTVDAAFAALGRHANIDQLNLPAVDVAIGHHGIQVDDHLVSSNPRVYAIGDVVDRPQPKLTPVAGFEGRYVANQLLQTNSDPIAYPLIPHTVYASPQISQAGVSVQTAQENPDQYRLNQQTTTNWYTFNRIKEPNAIVTTIFDRQTNQLVGAAAYTTIAEELINYLTPLIKNHTTAAELTDTIYNYPSPASDLKYYY
>NZ_LT960790.1|WP_094365861.1|1929142_1930081_-|ABC-transporter-ATP-binding-protein
MIEFEGVTKQYGQSRALDGLTLTIPDNGLFVLVGPSGSGKTTSVKMINRLIEPTSGTIKIDGQPIDQMDLQTLRLNIGYVLQNIALFPHLTIEENIAIQLEVLKWSKADRQKRARELLTLVNLDPDKYANRYPSELSGGQQQRIGIIRALATKPKVILMDEPFSALDPVTRTQLQDLVLDLQKQLHNTVVFVTHDMKEALRLGDEIAVMRAGSIQQIGTAEAIFNQPKNDFVREFFDIERQPTTLTVQDLVAADLGTVVSGQPETIATTASIKALAQALIAQPEGVVVALDDQTQRQLTTTDLTTLIAKRGL
>NZ_LT960790.1|WP_172826499.1|1927616_1929140_-|ABC-transporter-permease/substrate-binding-protein
MIQQIQQILTTQSGELLQALGQHLEISLLALLIAAVIGIPLAIILTAHQKLAEAMLQVTSVLQTIPSLALLGLLIPLVGIGTVPAVITLVLYALMPIFQNTYAGLSGIDPALKEAEIAFGLPRAKRLLRIELPLAMPLIISGLRIALVMIIGTATLAALIGAGGLGTFILVGIQSNNNALLVVGATLSAVLALVVSALIRWLGTLSFKKITISLAIFVGLFGLVEGVTRFQAAPTKITIAGKLGSEPEILMNMYRDLILADHPQYDVTVKPNFGGTTFLFNALKADQIDIYPEFTGTVLQTLVKSPTKTNQNPTKTYQLAKKSLQEQFKMTYLPPMRYQNGYDLAVSAAFAKKYNVKTISDLAALNQSFTAGFDPDFYHQKDGYQGLRKTYQLKLDAKIMEPSIRYKAIADGKVDVVDGYTTDAEVARYKLVVLKDDRHFFPPYQGAPIMKESFKKAHPEVVKALNKLAGKITEDQMQQMNYQVQVKHRKARDVAHDFLVEQKIINK
>NZ_LT960790.1|WP_172952567.1|1926791_1927553_-|MerR-family-transcriptional-regulator
MNYQIKAFAELTGVSERTLRYYHERGLLVPAVASNGYRSYSSQDADRLQLILMYRQLQFSLAEIQQLLALPPAERLTHLAAKRDELTKQQAVLTATLAQLDVTLQNQTGGSQMTDQTKFERFKQQAIAENDQRYGQEVAANYGEQAKQEADQHFAGLTKAQYATMQATEANLTTALQTYLAQPQLPSEAAQAAFKAHQTWLQTATPRYSLAMHRGLAAMYVADERFVAYYTKLVGNSKAAALKAIIEYYAIEA
>NZ_LT960790.1|WP_099769415.1|1938145_1939215_-|IS3-like-element-IS1520-family-transposase
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTKVLSSNERALIKENKRLKEELDIFKTSGGAHGKKLIIKGRALVLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQEVLTAWLRYPMYGYPRLTILLNQQSDIHVSQRLVYQQMCELGIRSRMVKRINKPTTQTDYDQRPNLIKQLTDQSGILLTDITYIPLNHTWCYLASVYNPVTRRVIAYQLNTQMTKELATNVITQVMAQAVKPQIIHSDMGSQYTSDLFENTLSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYNSDRISLVA
>NZ_LT960790.1|WP_157771040.1|1939204_1941130_-|BREX-system-P-loop-protein-BrxC
MKVNELFKKPIDREIQGVVKIGQDQESNTYQELDEYVITSEIRKNMGTFFEAYVKSLEQPTDQMGVWISGFFGSGKSHFLKILSYLIDSQKTVKGRRPISFIEDKFEENDETLALIKRASEQPNQVALFNIESKAEADSMNSKSAVVKVFNKVLNELRGFSGANAWIAEMEETLANNGQYEQFKTAFERIADLDWVEGREEIFYNEDSVIEALSEVTEMTIESARHFIESGEANYEISDESFAKKVKRYVDQQPDNYHLVFLADEMGQYIADNGQLMLDLQMVVEDLAQYCQGKVWVVVTSQQDIDSLNRGGMSSNDFSKIQGRFNTRLPLSSANADEVIKKRLLAKTEEASAILTTEYTENEAVLKNKILFTNDTAEMKSFDNVDEFIDTYPFVPYQFNLLQKVFMGIRGHGFAGKHLANGERSLLSAAQYAAQMFSEQSTDFLVPFSVFYENIENALEYSVQTPIIQAKSNKRLDKFDVEVLKLLFLIRYVQEIPSNIDNLTTLMIDNVDAQMVTIKSNIQESLKRLEREFLIQRQGTEYVFLTNEEQDINRDIQSVEITNSDIVGYLGSMIYTDILGLKQYTYKPFKEFPSVSYNFEVNQIVDNIVLKKATSQLGSYDGITDKLFDIIHHKGAFYYGN
>NZ_LT960790.1|WP_099947527.1|1941149_1941422_-|DUF1788-domain-containing-protein
MMYYIEQFVRNSIIGAIREHYEDNAITFITGVGSAYPLVRAHTVLNNLQPIIVQKPLILFYPGVYEGNKLSLFNQFKDDNYYRAFRIVEP
>NZ_LT960790.1|WP_099769415.1|1941438_1942508_+|IS3-like-element-IS1520-family-transposase
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTKVLSSNERALIKENKRLKEELDIFKTSGGAHGKKLIIKGRALVLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQEVLTAWLRYPMYGYPRLTILLNQQSDIHVSQRLVYQQMCELGIRSRMVKRINKPTTQTDYDQRPNLIKQLTDQSGILLTDITYIPLNHTWCYLASVYNPVTRRVIAYQLNTQMTKELATNVITQVMAQAVKPQIIHSDMGSQYTSDLFENTLSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYNSDRISLVA
>NZ_LT960790.1|WP_099947528.1|1942604_1943033_-|hypothetical-protein
MRTTNERLNELQARISDNQFLTKQGLGNEVSFYIFDYNPADELMVRSRLPEIERYTANKLDTPIKEFNIFDIATRFFEERQYMEKNYQMEQMKDSFTLYDRMQRALKTATERDEVIKYIGSYVKNPDIKVRTNLTFNLNYLI
>NZ_LT960790.1|WP_099947529.1|1943029_1943623_-|DUF1819-family-protein
MKDNYRTTLNTRPLMFLESRRVGKLLVKRVSTEEIRRQVIEEDLLQLPSISRRKIAVEIILKRLNYLDDYLITKFVEVDQDTARILLLYSILRNDQLFYEFMREVYWQSIISHADTLRKSDIINFITNKGLQSNRVKMWTDGTKRRLADAYQQILTETQLLQDEHIKNSILTGDVRQYLIQNGDKQRVEILIGRLIS
>NZ_LT960790.1|WP_016264305.1|1954503_1956129_-|ATP-binding-cassette-domain-containing-protein
MITVSEMSLTLSGRKLYEDVNLKFTPGNCYGVIGANGAGKSTFLKLLEGKLQPSSGHISMGPNERMSSLNQDHYAFEEFEVLETVIQGHKKLYEVMQAKDALYAKAEFTEEDGMKAADLEAEFAEMNGWDAESEAAQLLQALGIDESLHHVKMSELMEGQKIKVLLGQALFGKPDILLLDEPTNGLDSASVEWLENFLADFPNIVIVVSHDRYFLNQVCTMMCDVDFGRIKTFVGNYDFWLESSKLAAKLQSNVNAKKEEQIKELQDFIARFSANASKSKQATSRKKQLEKITLEDIQPSSRQYPFIKFDFERELGNDLLRVENVSKTIDGVKVLDNISFSVKPDEKAAIVSRNDVATAVLMQILAGEVEPDSGTVTWGVTSQQSYLPRDTNSAFNDDQLIILDWLRQFAAKGEDDNTFLRGFLGKMLFSGDEVTKEINVLSGGEKVRCILSKIMLQKSNTLLLDDPTNHLDLESITSLNDALIDFKGALIFTSHDHQFIQTIADHIIEVSANGLVDRAETNYDEFLAHPELQKQVAKLYA
>NZ_LT960790.1|WP_076632512.1|1956253_1958146_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MREYDVAHYDVIVVGAGHAGSEAALAAARMGRETLLLTINLDMVAFMPCNPSLGGPAKGIVVREIDALGGQMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRTMKRTIETTEHLTLRQGIAESLIVEDGVCKGIVTNTGARYSADSVILTAGTASRGKIIIGELTYSSGPNNSIPSIKLSESLEDNGFVLTRFKTGTPPRVDGTTIDFSKTEEQPGDKEPNHFSFETPDSAYLKDQLSCWMTYTNDTTHQVIRDNLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKPRHQIFLEPEGRETEEYYVGDFSTSMPEEIQHKMIHSIEGLENAQMMRPGYAIEYDVVEPWQLKPTLETKVVENLYTAGQMNGTSGYEEAAGQGLMAGINAALKQTGRDPFILDRSEAYIGVLIDDLVTKGTKEPYRLLTSRAEYRLMLRHDNADLRLTEKGHELGLINDDRFDSYEVKKAAVEAELARLEKIRLKPTPEIQAFLAAKGEAPLKDGVLASDFLKRPEVKYADLIQFIPAVEGIDNRVVEQVEIQVKYAGYIDKEKAKIAKLKRMEAKKIPANIDYDAIEGLATEGRQKLQKIQPETLAQASRIGGVNPADIGILSVYIQQGKIAKVK
>NZ_LT960790.1|WP_056946793.1|1958176_1959565_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MPTTVTEFDTITAISTPPGEGAISIVRLSGDDSLAIIKRVYRGKDLDKVASHTINYGHIIDPKTDVVVDEVMVSVMRAPKTFTREDVIEINCHGGIVATNRILQLLMSYGARMAEPGEFTKRAFLNGRIDLTQAESVMDLIRAKTDRAMQVAVDQLDGSLTHLIKNLRQEILEVLAQVEVNIDYPEYDTDEMTTRILLEKAELVKGRIGELLQTAQQGKVLREGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTEDKVEKIGVERSRAAITKADLILLVLNQSEPLTIEDRELITATTDKKRIIILNKTDLPNQLDLDELQTLVRADEVIQTSILTSEGVTDLEAQIAKLFFGGIENSQSTVMITNARQIGLLNQAQQSLDEVISGIAAGMPVDLVQIDMTNCWDKLGEITGDSAPDELITELFSQFCLGK
>NZ_LT960790.1|WP_016264307.1|1959723_1960446_-|protein-jag
MPTFEGKDIQAAIDAGLAALKLTRDKVTVDVLEEGKKGFLGFGKQPAIVTLNPITVAEPTPVEPEQPSVEDVATEPADQPEKAPMRQSREATIEALKQYITDITAQIGTPVTMTVTKEHKQVIFHLKTTKEGLLIGKHGKTINALQYLAQTYYDHHTKGKQLMMLDVGDYRQRRATIVKHLADKAAREVVATGKAVTLEPMPAFERKIVHGYLTNNRHVQTHSEGRGDRRVIVVESARSF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT960790_2	2.4\|1937439\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937439-1937468	30	MN855837	Bacteriophage sp. isolate 206, complete genome	6348-6377	0	1.0
NZ_LT960790_1	1.7\|1150274\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150274-1150303	30	MN855837	Bacteriophage sp. isolate 206, complete genome	2147-2176	1	0.967
NZ_LT960790_2	2.2\|1937307\|30\|NZ_LT960790\|CRISPRCasFinder,CRT	1937307-1937336	30	MN855837	Bacteriophage sp. isolate 206, complete genome	4772-4801	1	0.967
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	MK504446	Lactobacillus phage SAC12B, complete genome	59096-59125	2	0.933
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	MN855837	Bacteriophage sp. isolate 206, complete genome	7668-7697	3	0.9
NZ_LT960790_1	1.26\|1151528\|29\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151528-1151556	29	MN855837	Bacteriophage sp. isolate 206, complete genome	7514-7542	3	0.897
NZ_LT960790_1	1.12\|1150604\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150604-1150633	30	MT939240	Enterococcus phage 9181, complete genome	68999-69028	4	0.867
NZ_LT960790_1	1.27\|1151593\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151593-1151622	30	KX077890	Streptococcus phage phiLP081102, complete genome	16165-16194	4	0.867
NZ_LT960790_1	1.27\|1151593\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151593-1151622	30	KX077895	Streptococcus phage phiZJ20091101-4, complete genome	17328-17357	4	0.867
NZ_LT960790_1	1.27\|1151593\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151593-1151622	30	KC413987	Streptococcus phage phiSS12, complete genome	15291-15320	4	0.867
NZ_LT960790_1	1.27\|1151593\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151593-1151622	30	MK448987	Streptococcus phage Javan576, complete genome	24448-24477	4	0.867
NZ_LT960790_2	2.6\|1937571\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937571-1937600	30	MF417967	Uncultured Caudovirales phage clone 3S_16, partial genome	4518-4547	5	0.833
NZ_LT960790_2	2.6\|1937571\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937571-1937600	30	MN856108	Cystoviridae sp. isolate 264, complete genome	5181-5210	5	0.833
NZ_LT960790_1	1.1\|1149878\|30\|NZ_LT960790\|CRISPRCasFinder	1149878-1149907	30	NC_019782	Lactobacillus phage AQ113, complete genome	25520-25549	6	0.8
NZ_LT960790_1	1.10\|1150472\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150472-1150501	30	MK448753	Streptococcus phage Javan407, complete genome	17290-17319	6	0.8
NZ_LT960790_1	1.16\|1150868\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150868-1150897	30	MN693910	Marine virus AFVG_250M312, complete genome	1349-1378	6	0.8
NZ_LT960790_2	2.6\|1937571\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937571-1937600	30	NC_028666	Streptococcus phage Str-PAP-1, complete genome	2054-2083	6	0.8
NZ_LT960790_2	2.6\|1937571\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937571-1937600	30	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	805898-805927	6	0.8
NZ_LT960790_2	2.6\|1937571\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937571-1937600	30	MK448751	Streptococcus phage Javan399, complete genome	9299-9328	6	0.8
NZ_LT960790_1	1.1\|1149878\|30\|NZ_LT960790\|CRISPRCasFinder	1149878-1149907	30	NC_019763	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence	38783-38812	7	0.767
NZ_LT960790_1	1.6\|1150208\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150208-1150237	30	AP014378	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C22, * SEQUENCING IN PROGRESS *	8802-8831	7	0.767
NZ_LT960790_1	1.15\|1150802\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150802-1150831	30	MG592393	Vibrio phage 1.007.O._10N.261.55.F9, partial genome	10852-10881	7	0.767
NZ_LT960790_1	1.17\|1150934\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150934-1150963	30	NZ_AP017970	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence	24314-24343	7	0.767
NZ_LT960790_1	1.23\|1151330\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151330-1151359	30	NC_018066	Desulfosporosinus acidiphilus SJ4 plasmid pDESACI.01, complete sequence	45205-45234	7	0.767
NZ_LT960790_1	1.26\|1151528\|29\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151528-1151556	29	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	15819-15847	7	0.759
NZ_LT960790_1	1.26\|1151528\|29\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151528-1151556	29	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	72653-72681	7	0.759
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	274703-274732	7	0.767
NZ_LT960790_1	1.36\|1150274\|38\|NZ_LT960790\|CRT	1150274-1150311	38	MN855837	Bacteriophage sp. isolate 206, complete genome	2139-2176	7	0.816
NZ_LT960790_2	2.3\|1937373\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937373-1937402	30	MH622934	Microviridae sp. isolate ctbg646, complete genome	190-219	7	0.767
NZ_LT960790_2	2.6\|1937571\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937571-1937600	30	KY065466	Streptococcus phage IPP25, complete genome	10617-10646	7	0.767
NZ_LT960790_2	2.6\|1937571\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937571-1937600	30	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	375147-375176	7	0.767
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	567354-567383	8	0.733
NZ_LT960790_1	1.6\|1150208\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150208-1150237	30	MN812211	Flavobacterium phage vB_FspS_laban6-1, complete genome	3416-3445	8	0.733
NZ_LT960790_1	1.9\|1150406\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150406-1150435	30	NZ_AP018258	Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome	78544-78573	8	0.733
NZ_LT960790_1	1.10\|1150472\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150472-1150501	30	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	10356-10385	8	0.733
NZ_LT960790_1	1.10\|1150472\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150472-1150501	30	NZ_CP045608	Bacillus cereus strain SB1 plasmid p2, complete sequence	26243-26272	8	0.733
NZ_LT960790_1	1.10\|1150472\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150472-1150501	30	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	125181-125210	8	0.733
NZ_LT960790_1	1.10\|1150472\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150472-1150501	30	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	127921-127950	8	0.733
NZ_LT960790_1	1.10\|1150472\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150472-1150501	30	NC_019782	Lactobacillus phage AQ113, complete genome	1980-2009	8	0.733
NZ_LT960790_1	1.24\|1151396\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151396-1151425	30	KC292025	Halovirus HHTV-1, complete genome	45771-45800	8	0.733
NZ_LT960790_1	1.26\|1151528\|29\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151528-1151556	29	AP013397	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C46	10207-10235	8	0.724
NZ_LT960790_1	1.34\|1150142\|38\|NZ_LT960790\|CRT	1150142-1150179	38	MN855837	Bacteriophage sp. isolate 206, complete genome	7660-7697	8	0.789
NZ_LT960790_1	1.55\|1151528\|37\|NZ_LT960790\|CRT	1151528-1151564	37	MN855837	Bacteriophage sp. isolate 206, complete genome	7514-7550	8	0.784
NZ_LT960790_1	1.58\|1151725\|38\|NZ_LT960790\|CRT	1151725-1151762	38	MK504446	Lactobacillus phage SAC12B, complete genome	59088-59125	8	0.789
NZ_LT960790_2	2.6\|1937571\|30\|NZ_LT960790\|CRISPRCasFinder,CRT,PILER-CR	1937571-1937600	30	MK448931	Streptococcus phage Javan414, complete genome	8226-8255	8	0.733
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_AP017932	Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence	9129-9158	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP035177	Lactobacillus plantarum strain SRCM103426 plasmid unnamed3	13244-13273	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP020098	Lactobacillus plantarum strain K25 plasmid unnamed5, complete sequence	3124-3153	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP025208	Lactobacillus sakei strain WiKim0074 plasmid pLSW74_2, complete sequence	8884-8913	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP028979	Lactobacillus plantarum strain LQ80 plasmid pLQ802, complete sequence	24515-24544	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP046038	Lactobacillus sakei strain CBA3614 plasmid unnamed1, complete sequence	27888-27917	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP050807	Lactobacillus plantarum strain SPC-SNU 72-2 plasmid pLBP511, complete sequence	8664-8693	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP040377	Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed3, complete sequence	45431-45460	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_LT907984	Lactobacillus sakei subsp. sakei 23K plasmid pJ23A1, complete sequence	15149-15178	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_LT907987	Lactobacillus sakei strain T332 plasmid p332A2, complete sequence	14867-14896	9	0.7
NZ_LT960790_1	1.6\|1150208\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150208-1150237	30	NZ_CP024036	Bacillus aryabhattai strain K13 plasmid unnamed1	100847-100876	9	0.7
NZ_LT960790_1	1.6\|1150208\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150208-1150237	30	NZ_CP026738	Bacillus megaterium strain YC4-R4 plasmid unnamed2	98961-98990	9	0.7
NZ_LT960790_1	1.6\|1150208\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150208-1150237	30	NZ_CP045274	Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence	30581-30610	9	0.7
NZ_LT960790_1	1.6\|1150208\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150208-1150237	30	NZ_CP023318	Bacillus megaterium strain A plasmid p1, complete sequence	106896-106925	9	0.7
NZ_LT960790_1	1.6\|1150208\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1150208-1150237	30	NZ_CP053689	Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence	98430-98459	9	0.7
NZ_LT960790_1	1.21\|1151198\|30\|NZ_LT960790\|CRISPRCasFinder	1151198-1151227	30	NC_015270	Enterococcus phage EFRM31, complete genome	8715-8744	9	0.7
NZ_LT960790_1	1.23\|1151330\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151330-1151359	30	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	307413-307442	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NZ_CP021525	Acetobacter ascendens strain SRCM101447 plasmid pAP1447-1	77942-77971	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	94695-94724	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	94719-94748	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	94703-94732	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NZ_CP015165	Acetobacter ascendens strain LMG 1590 plasmid unnamed1, complete sequence	33486-33515	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NC_021976	Acetobacter pasteurianus 386B plasmid Apa386Bp1, complete sequence	29351-29380	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NZ_CP042810	Acetobacter oryzoeni strain B6 plasmid unnamed2, complete sequence	40898-40927	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	156800-156829	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NZ_CP021512	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342 plasmid pAP1342-3, complete sequence	62528-62557	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NZ_CP021512	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342 plasmid pAP1342-3, complete sequence	89045-89074	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	95075-95104	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NZ_AP014882	Acetobacter pasteurianus NBRC 101655 plasmid plasmid1 DNA, complete genome	135688-135717	9	0.7
NZ_LT960790_1	1.29\|1151725\|30\|NZ_LT960790\|CRISPRCasFinder,PILER-CR	1151725-1151754	30	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	94687-94716	9	0.7
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP014885	Lactobacillus backii strain TMW 1.1991 plasmid pL11991-4, complete sequence	21011-21040	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP017381	Lactobacillus plantarum strain TMW 1.1623 plasmid pL11623-2, complete sequence	4338-4367	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP018868	Lactobacillus alimentarius DSM 20249 plasmid pLDW-11, complete sequence	43326-43355	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP029967	Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence	46215-46244	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP035557	Lactobacillus plantarum strain SRCM103297 plasmid unnamed1	7459-7488	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP035557	Lactobacillus plantarum strain SRCM103297 plasmid unnamed1	49741-49770	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP021933	Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence	53598-53627	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP044413	Lactobacillus sp. JM1 plasmid unnamed1, complete sequence	28673-28702	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_AP014682	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence	11880-11909	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP011537	Lactobacillus fermentum 3872 plasmid pLF3872, complete sequence	19083-19112	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP014891	Lactobacillus backii strain TMW 1.1992 plasmid pL11992-1, complete sequence	25098-25127	10	0.667
NZ_LT960790_1	1.5\|1150142\|30\|NZ_LT960790\|CRISPRCasFinder	1150142-1150171	30	NZ_CP028242	Lactobacillus plantarum strain SRCM101518 plasmid unnamed1, complete sequence	8952-8981	10	0.667

1. spacer 2.4|1937439|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to MN855837 (Bacteriophage sp. isolate 206, complete genome) position: , mismatch: 0, identity: 1.0

taatcagggtcaatcgaacgttcaggttgg	CRISPR spacer
taatcagggtcaatcgaacgttcaggttgg	Protospacer
******************************

2. spacer 1.7|1150274|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to MN855837 (Bacteriophage sp. isolate 206, complete genome) position: , mismatch: 1, identity: 0.967

tgttcaccggtttaaaaaatcccatttaat	CRISPR spacer
tattcaccggtttaaaaaatcccatttaat	Protospacer
*.****************************

3. spacer 2.2|1937307|30|NZ_LT960790|CRISPRCasFinder,CRT matches to MN855837 (Bacteriophage sp. isolate 206, complete genome) position: , mismatch: 1, identity: 0.967

ttaagcggtaatgtgccagtagcagttgtt	CRISPR spacer
ttaagtggtaatgtgccagtagcagttgtt	Protospacer
*****.************************

4. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 2, identity: 0.933

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
ctcgcaggctgaatatgacgcattggctga	Protospacer
******.***** *****************

5. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to MN855837 (Bacteriophage sp. isolate 206, complete genome) position: , mismatch: 3, identity: 0.9

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
tgattttgtaaccagcgttattctgtaaac	Protospacer
*.*..*************************

6. spacer 1.26|1151528|29|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to MN855837 (Bacteriophage sp. isolate 206, complete genome) position: , mismatch: 3, identity: 0.897

taaagaagcttacgatggattagacccca	CRISPR spacer
aaaagaagcttatgaaggattagacccca	Protospacer
 ***********.** *************

7. spacer 1.12|1150604|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to MT939240 (Enterococcus phage 9181, complete genome) position: , mismatch: 4, identity: 0.867

ggacaatttggacttacaccgataacacca	CRISPR spacer
gaacaacttggacttacacagataacacta	Protospacer
*.****.************ ********.*

8. spacer 1.27|1151593|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to KX077890 (Streptococcus phage phiLP081102, complete genome) position: , mismatch: 4, identity: 0.867

tagcttttaacggcttcaatgcttggccaa	CRISPR spacer
tagcttttaccgtcttcaatgcttggacca	Protospacer
********* ** ************* * *

9. spacer 1.27|1151593|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to KX077895 (Streptococcus phage phiZJ20091101-4, complete genome) position: , mismatch: 4, identity: 0.867

tagcttttaacggcttcaatgcttggccaa	CRISPR spacer
tagcttttaccgtcttcaatgcttggacca	Protospacer
********* ** ************* * *

10. spacer 1.27|1151593|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to KC413987 (Streptococcus phage phiSS12, complete genome) position: , mismatch: 4, identity: 0.867

tagcttttaacggcttcaatgcttggccaa	CRISPR spacer
tagcttttaccgtcttcaatgcttggacca	Protospacer
********* ** ************* * *

11. spacer 1.27|1151593|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to MK448987 (Streptococcus phage Javan576, complete genome) position: , mismatch: 4, identity: 0.867

tagcttttaacggcttcaatgcttggccaa	CRISPR spacer
tagcttttaccgtcttcaatgcttggacca	Protospacer
********* ** ************* * *

12. spacer 2.6|1937571|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to MF417967 (Uncultured Caudovirales phage clone 3S_16, partial genome) position: , mismatch: 5, identity: 0.833

acattaacaattatgtattagttgcgccaa	CRISPR spacer
ataaaaacaattatgtattagtcgcaccaa	Protospacer
*.*  *****************.**.****

13. spacer 2.6|1937571|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to MN856108 (Cystoviridae sp. isolate 264, complete genome) position: , mismatch: 5, identity: 0.833

acattaacaattatgtattagttgcgccaa	CRISPR spacer
acgataacaattatgtagtagtagcgccta	Protospacer
**. ************* **** ***** *

14. spacer 1.1|1149878|30|NZ_LT960790|CRISPRCasFinder matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 6, identity: 0.8

aaaccactttgtaaaatcttcttgaaccgt	CRISPR spacer
aaaccacttagtaaagtcttcttgcgcctg	Protospacer
********* *****.******** .**

15. spacer 1.10|1150472|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to MK448753 (Streptococcus phage Javan407, complete genome) position: , mismatch: 6, identity: 0.8

cattatcgagattttaacaaagatattaaa	CRISPR spacer
gtttatagcgattttaacaaagatattcac	Protospacer
  **** * ****************** *

16. spacer 1.16|1150868|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to MN693910 (Marine virus AFVG_250M312, complete genome) position: , mismatch: 6, identity: 0.8

tataatctgttgttaaaaatgccattgtta	CRISPR spacer
cataatctgttgataaaaatgcttctgcta	Protospacer
.*********** *********. .**.**

17. spacer 2.6|1937571|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to NC_028666 (Streptococcus phage Str-PAP-1, complete genome) position: , mismatch: 6, identity: 0.8

acattaacaattatgtattagttgcgccaa	CRISPR spacer
atgacaacaattatgtcttagttgcgccat	Protospacer
*.. .*********** ************

18. spacer 2.6|1937571|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 6, identity: 0.8

acattaacaattatgtattagttgcgccaa	CRISPR spacer
acattaacaattatgtatcagtggcaaaat	Protospacer
******************.*** **.  *

19. spacer 2.6|1937571|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to MK448751 (Streptococcus phage Javan399, complete genome) position: , mismatch: 6, identity: 0.8

acattaacaattatgtattagttgcgccaa	CRISPR spacer
accctaacaattatgtgttagttgctccgt	Protospacer
** .************.******** **.

20. spacer 1.1|1149878|30|NZ_LT960790|CRISPRCasFinder matches to NC_019763 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence) position: , mismatch: 7, identity: 0.767

aaaccactttgtaaaatcttcttgaaccgt	CRISPR spacer
tatccactttcttaaatcttcttgaacgac	Protospacer
 * ******* * ************** ..

21. spacer 1.6|1150208|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to AP014378 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C22, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

tagcggtgagaaaataacaattaattctgt	CRISPR spacer
gaatgttgagaaaattacaattaattatga	Protospacer
 *..* ********* ********** **

22. spacer 1.15|1150802|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to MG592393 (Vibrio phage 1.007.O._10N.261.55.F9, partial genome) position: , mismatch: 7, identity: 0.767

acgtctttaaacggttacccgtagtattca	CRISPR spacer
gcttctttaaacggttagccgcagtactgc	Protospacer
.* ************** ***.****.*

23. spacer 1.17|1150934|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_AP017970 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence) position: , mismatch: 7, identity: 0.767

ttatgacaatccaattaaacaaatgtttgt	CRISPR spacer
tataaataatccaattaaacaaatttttct	Protospacer
*   .*.***************** *** *

24. spacer 1.23|1151330|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NC_018066 (Desulfosporosinus acidiphilus SJ4 plasmid pDESACI.01, complete sequence) position: , mismatch: 7, identity: 0.767

gtgctcataagcctctaaaaactcaaccaa	CRISPR spacer
ttgctcataagcatctaaaaacttacggac	Protospacer
 *********** **********.*   *

25. spacer 1.26|1151528|29|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 7, identity: 0.759

taaagaagcttacgatggattagacccca	CRISPR spacer
taaagaagctttcgatggattttctcaaa	Protospacer
*********** *********   .*  *

26. spacer 1.26|1151528|29|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 7, identity: 0.759

taaagaagcttacgatggattagacccca	CRISPR spacer
taaagaagctttcgatggattttctcaaa	Protospacer
*********** *********   .*  *

27. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 7, identity: 0.767

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
catccaagctgattaggacacattggcggc	Protospacer
* . *********** ***.******* *

28. spacer 1.36|1150274|38|NZ_LT960790|CRT matches to MN855837 (Bacteriophage sp. isolate 206, complete genome) position: , mismatch: 7, identity: 0.816

tgttcaccggtttaaaaaatcccatttaatgttgaact	CRISPR spacer
tattcaccggtttaaaaaatcccatttaatcaccccct	Protospacer
*.****************************  .   **

29. spacer 2.3|1937373|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to MH622934 (Microviridae sp. isolate ctbg646, complete genome) position: , mismatch: 7, identity: 0.767

tcacctatgaagattgtccataagcggaca	CRISPR spacer
atccatatgaagattgtccatcagcggaac	Protospacer
 . * **************** ******

30. spacer 2.6|1937571|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to KY065466 (Streptococcus phage IPP25, complete genome) position: , mismatch: 7, identity: 0.767

acattaacaattatgtattagttgcgccaa	CRISPR spacer
atccaaacaattatgttttagttgctccat	Protospacer
*. . *********** ******** ***

31. spacer 2.6|1937571|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 7, identity: 0.767

acattaacaattatgtattagttgcgccaa	CRISPR spacer
gctgtcacatttatgtattagttgcgcaac	Protospacer
.*  * *** ***************** *

32. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 8, identity: 0.733

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gaaccttgtaaccagcgattttcttcggaa	Protospacer
 **************** * **** ...*

33. spacer 1.6|1150208|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 8, identity: 0.733

tagcggtgagaaaataacaattaattctgt	CRISPR spacer
agatgttgaaaaagtaacaattaattctgg	Protospacer
 ...* ***.***.***************

34. spacer 1.9|1150406|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_AP018258 (Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome) position: , mismatch: 8, identity: 0.733

aatggaatagtttaatttgggatgataaaa	CRISPR spacer
cgcatattatttcaatttgggatgataaaa	Protospacer
 ... * ** **.*****************

35. spacer 1.10|1150472|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

cattatcgagattttaacaaagatattaaa	CRISPR spacer
aacgttcgacattttaacaaagatattctg	Protospacer
 *.  **** *****************  .

36. spacer 1.10|1150472|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP045608 (Bacillus cereus strain SB1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

cattatcgagattttaacaaagatattaaa	CRISPR spacer
aacgttcgacattttaacaaagatattccg	Protospacer
 *.  **** *****************  .

37. spacer 1.10|1150472|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 8, identity: 0.733

cattatcgagattttaacaaagatattaaa	CRISPR spacer
tattatcgagattttaaaaatgatcaggag	Protospacer
.**************** ** ***   .*.

38. spacer 1.10|1150472|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 8, identity: 0.733

cattatcgagattttaacaaagatattaaa	CRISPR spacer
tattatcgagattttaaaaatgatcaggag	Protospacer
.**************** ** ***   .*.

39. spacer 1.10|1150472|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 8, identity: 0.733

cattatcgagattttaacaaagatattaaa	CRISPR spacer
gtttatcaagatttcaacaaagatacaatg	Protospacer
  *****.******.**********. * .

40. spacer 1.24|1151396|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to KC292025 (Halovirus HHTV-1, complete genome) position: , mismatch: 8, identity: 0.733

tacatcacgcatcactccgatctgtgtaat	CRISPR spacer
gacatcacgcatcacccagatctgaatccc	Protospacer
 **************.* ****** .*  .

41. spacer 1.26|1151528|29|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to AP013397 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C46) position: , mismatch: 8, identity: 0.724

taaagaagcttacgatggattagacccca	CRISPR spacer
tagagaagcttacgatagattagttgatc	Protospacer
**.*************.****** .  .

42. spacer 1.34|1150142|38|NZ_LT960790|CRT matches to MN855837 (Bacteriophage sp. isolate 206, complete genome) position: , mismatch: 8, identity: 0.789

taaccttgtaaccagcgttattctgtaaacgttgaact	CRISPR spacer
tgattttgtaaccagcgttattctgtaaacttttcatc	Protospacer
*.*..************************* **  *..

43. spacer 1.55|1151528|37|NZ_LT960790|CRT matches to MN855837 (Bacteriophage sp. isolate 206, complete genome) position: , mismatch: 8, identity: 0.784

taaagaagcttacgatggattagaccccagttgaacc	CRISPR spacer
aaaagaagcttatgaaggattagaccccaagagtatc	Protospacer
 ***********.** *************.  * *.*

44. spacer 1.58|1151725|38|NZ_LT960790|CRT matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 8, identity: 0.789

ctcgcaagctgattatgacgcattggctgagttgaacc--	CRISPR spacer
ctcgcaggctgaatatgacgcattggctga--caagtctg	Protospacer
******.***** *****************  ..*..*

45. spacer 2.6|1937571|30|NZ_LT960790|CRISPRCasFinder,CRT,PILER-CR matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 8, identity: 0.733

acattaacaattatgtattagttgcgccaa	CRISPR spacer
atcccaataattatgtattagttgccccgt	Protospacer
*. ..**.***************** **.

46. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_AP017932 (Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcagggcta	Protospacer
  ************** ****** * .

47. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP035177 (Lactobacillus plantarum strain SRCM103426 plasmid unnamed3) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcagggcta	Protospacer
  ************** ****** * .

48. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP020098 (Lactobacillus plantarum strain K25 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagctttattcagggcta	Protospacer
  ************** ****** * .

49. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP025208 (Lactobacillus sakei strain WiKim0074 plasmid pLSW74_2, complete sequence) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcagggcta	Protospacer
  ************** ****** * .

50. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP028979 (Lactobacillus plantarum strain LQ80 plasmid pLQ802, complete sequence) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcagggcta	Protospacer
  ************** ****** * .

51. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP046038 (Lactobacillus sakei strain CBA3614 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcagggcta	Protospacer
  ************** ****** * .

52. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP050807 (Lactobacillus plantarum strain SPC-SNU 72-2 plasmid pLBP511, complete sequence) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagctttattcagggcta	Protospacer
  ************** ****** * .

53. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP040377 (Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcagggcta	Protospacer
  ************** ****** * .

54. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_LT907984 (Lactobacillus sakei subsp. sakei 23K plasmid pJ23A1, complete sequence) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcagggcta	Protospacer
  ************** ****** * .

55. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_LT907987 (Lactobacillus sakei strain T332 plasmid p332A2, complete sequence) position: , mismatch: 9, identity: 0.7

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcagggcta	Protospacer
  ************** ****** * .

56. spacer 1.6|1150208|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP024036 (Bacillus aryabhattai strain K13 plasmid unnamed1) position: , mismatch: 9, identity: 0.7

tagcggtgagaaaataacaattaattctgt	CRISPR spacer
cttcattgacaaaataacaattaattcctc	Protospacer
.  *. *** *****************. .

57. spacer 1.6|1150208|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP026738 (Bacillus megaterium strain YC4-R4 plasmid unnamed2) position: , mismatch: 9, identity: 0.7

tagcggtgagaaaataacaattaattctgt	CRISPR spacer
cttcattgacaaaataacaattaattcctc	Protospacer
.  *. *** *****************. .

58. spacer 1.6|1150208|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP045274 (Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence) position: , mismatch: 9, identity: 0.7

tagcggtgagaaaataacaattaattctgt	CRISPR spacer
ctttattgacaaaataacaattaattccgc	Protospacer
.  .. *** *****************.*.

59. spacer 1.6|1150208|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP023318 (Bacillus megaterium strain A plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

tagcggtgagaaaataacaattaattctgt	CRISPR spacer
cttcattgacaaaataacaattaattcctc	Protospacer
.  *. *** *****************. .

60. spacer 1.6|1150208|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP053689 (Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tagcggtgagaaaataacaattaattctgt	CRISPR spacer
aagcggtgcgaaaatcacaattaaaaagaa	Protospacer
 ******* ****** ********    .

61. spacer 1.21|1151198|30|NZ_LT960790|CRISPRCasFinder matches to NC_015270 (Enterococcus phage EFRM31, complete genome) position: , mismatch: 9, identity: 0.7

aagaagaagttgctaaaaaggtcgacgtaa	CRISPR spacer
tgtcgttagttgcttaaaaggtagacgtaa	Protospacer
 .  .  ******* ******* *******

62. spacer 1.23|1151330|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.7

gtgctcataagcctctaaaaactcaaccaa	CRISPR spacer
aatcttataagcctctaaaaattcaatatt	Protospacer
.  **.***************.****.

63. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP021525 (Acetobacter ascendens strain SRCM101447 plasmid pAP1447-1) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

64. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

65. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

66. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

67. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP015165 (Acetobacter ascendens strain LMG 1590 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

68. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NC_021976 (Acetobacter pasteurianus 386B plasmid Apa386Bp1, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

69. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP042810 (Acetobacter oryzoeni strain B6 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

70. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

71. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP021512 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342 plasmid pAP1342-3, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
accgcatgctgattatgacgcatcgaagtt	Protospacer
 .**** ****************.*.

72. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_CP021512 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342 plasmid pAP1342-3, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

73. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

74. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NZ_AP014882 (Acetobacter pasteurianus NBRC 101655 plasmid plasmid1 DNA, complete genome) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

75. spacer 1.29|1151725|30|NZ_LT960790|CRISPRCasFinder,PILER-CR matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 9, identity: 0.7

ctcgcaagctgattatgacgcattggctga	CRISPR spacer
aacgcatgctgattatgacgcatcgaagtt	Protospacer
  **** ****************.*.

76. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP014885 (Lactobacillus backii strain TMW 1.1991 plasmid pL11991-4, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagctttattcaaggcta	Protospacer
  ************** ****** . .

77. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP017381 (Lactobacillus plantarum strain TMW 1.1623 plasmid pL11623-2, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

78. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP018868 (Lactobacillus alimentarius DSM 20249 plasmid pLDW-11, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

79. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP029967 (Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

80. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP035557 (Lactobacillus plantarum strain SRCM103297 plasmid unnamed1) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gcaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

81. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP035557 (Lactobacillus plantarum strain SRCM103297 plasmid unnamed1) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gcaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

82. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP021933 (Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gcaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

83. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP044413 (Lactobacillus sp. JM1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

84. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_AP014682 (Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

85. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP011537 (Lactobacillus fermentum 3872 plasmid pLF3872, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

86. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP014891 (Lactobacillus backii strain TMW 1.1992 plasmid pL11992-1, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagctttattcaaggcta	Protospacer
  ************** ****** . .

87. spacer 1.5|1150142|30|NZ_LT960790|CRISPRCasFinder matches to NZ_CP028242 (Lactobacillus plantarum strain SRCM101518 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

taaccttgtaaccagcgttattctgtaaac	CRISPR spacer
gtaccttgtaaccagccttattcaaggcta	Protospacer
  ************** ****** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

549657 : 602599

Streptococcus_phage(21.43%)

bacteriocin,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056948822.1\|549657_550032_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_016264738.1\|550169_551111_+	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_056948877.1\|551238_552066_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_056948819.1\|552083_553106_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_099947264.1\|553743_554664_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	4.4e-85	51.1
WP_011374229.1\|554819_556544_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	9.5e-182	55.0
WP_056948818.1\|556668_557301_+	HD domain-containing protein	NA	NA	NA	NA
WP_056948816.1\|557508_559512_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_056948814.1\|559521_562374_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	4.5e-306	54.9
WP_056948812.1\|562494_563031_+	DUF308 domain-containing protein	NA	NA	NA	NA
WP_011374234.1\|563156_564041_+	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	8.4e-09	31.0
WP_099947265.1\|564037_565072_+	YvcK family protein	A1IMD5	Streptococcus_phage	2.0e-94	54.8
WP_099947266.1\|565074_566019_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.9e-52	39.0
WP_099947267.1\|566111_566567_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011374238.1\|566680_567205_-	DsbA family protein	NA	NA	NA	NA
WP_004265909.1\|567427_568012_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.3e-52	53.9
WP_157771025.1\|568554_569136_-	glycoside hydrolase family 73 protein	A0A0A7RUS8	Clostridium_phage	2.6e-22	43.3
WP_076632187.1\|569351_570311_+	nucleoside hydrolase	NA	NA	NA	NA
WP_099947269.1\|570502_574438_+	hypothetical protein	NA	NA	NA	NA
WP_056948801.1\|574552_576034_+	hypothetical protein	NA	NA	NA	NA
WP_056948799.1\|576014_576353_+	hypothetical protein	NA	NA	NA	NA
WP_016264756.1\|577079_577724_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_025016307.1\|577823_578204_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016264758.1\|578200_579112_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	4.6e-10	31.9
WP_099947270.1\|581214_581961_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_035144627.1\|581993_582395_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_016264762.1\|582474_583218_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_016264763.1\|583300_583867_+	hypothetical protein	NA	NA	NA	NA
WP_099947271.1\|583888_585007_-	NAD(P)-dependent alcohol dehydrogenase	M1PHA2	Moumouvirus	2.9e-14	30.7
WP_016264765.1\|585117_585759_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_016264766.1\|585897_586770_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.7e-17	28.3
WP_056948793.1\|586773_587517_+	ABC transporter permease	NA	NA	NA	NA
WP_016264768.1\|587516_588053_+	hypothetical protein	NA	NA	NA	NA
WP_076632181.1\|588080_588644_+	hypothetical protein	NA	NA	NA	NA
WP_011374255.1\|588636_589242_+	response regulator transcription factor	NA	NA	NA	NA
WP_011374256.1\|589311_589638_+	hypothetical protein	NA	NA	NA	NA
WP_016264772.1\|589761_591402_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011374258.1\|591481_591889_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_011374259.1\|591954_592251_-	hypothetical protein	NA	NA	NA	NA
WP_099947272.1\|592456_592819_+	hypothetical protein	NA	NA	NA	NA
WP_011374261.1\|592947_593838_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	3.1e-19	33.3
WP_011374262.1\|593837_594704_+	ABC transporter permease	NA	NA	NA	NA
WP_011374263.1\|594730_595183_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_099947273.1\|595188_595596_+	DUF3021 domain-containing protein	NA	NA	NA	NA
WP_099947274.1\|595656_596004_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_004271310.1\|596180_596294_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_157771026.1\|596501_597659_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_004271265.1\|597660_598407_+	response regulator transcription factor	NA	NA	NA	NA
WP_004271264.1\|598553_598739_+\|bacteriocin	bacteriocin sakacin-P	NA	NA	NA	NA
WP_076787949.1\|598832_599129_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_099947275.1\|599479_601483_+	peptide cleavage/export ABC transporter	A0A1V0SJ29	Klosneuvirus	1.7e-12	23.4
WP_099769415.1\|601529_602599_-\|transposase	IS3-like element IS1520 family transposase	Q6J1X2	Lactobacillus_phage	6.3e-27	34.9

DBSCAN-SWA_2

606276 : 644217

Lactococcus_phage(31.25%)

holin,integrase,capsid,tail,bacteriocin

attL 614556:614572|attR 647708:647724

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004271083.1\|606276_606603_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_004271076.1\|606946_607279_-	hypothetical protein	NA	NA	NA	NA
WP_004271086.1\|607494_608535_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	A0A1W6JHY1	Lactococcus_phage	4.7e-11	30.8
WP_099947278.1\|608669_609194_-	endonuclease III	NA	NA	NA	NA
WP_076800289.1\|609241_609670_-	hypothetical protein	NA	NA	NA	NA
WP_076800286.1\|609828_611184_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_076800284.1\|611293_611536_+	hypothetical protein	NA	NA	NA	NA
WP_076800282.1\|611592_613374_-	glycerophosphoryl diester phosphodiesterase membrane domain-containing protein	NA	NA	NA	NA
WP_076800280.1\|613536_613752_+	hypothetical protein	NA	NA	NA	NA
WP_085844823.1\|613884_614355_+	hypothetical protein	NA	NA	NA	NA
614556:614572	attL	NA	NA	NA	NA
WP_172952563.1\|614734_615847_-\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	3.0e-64	39.1
WP_099947280.1\|615986_616661_-	hypothetical protein	NA	NA	NA	NA
WP_099947281.1\|616720_618154_-	NINE protein	A0A0A8WJ41	Clostridium_phage	4.5e-20	34.1
WP_099947282.1\|618258_618714_-	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	2.1e-16	36.9
WP_076647219.1\|618751_619069_-	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	9.3e-19	48.5
WP_076647221.1\|619304_619508_+	helix-turn-helix transcriptional regulator	A0A1S5SDM7	Streptococcus_phage	7.3e-09	44.3
WP_076647224.1\|619570_619762_+	hypothetical protein	NA	NA	NA	NA
WP_076647227.1\|619742_620120_-	DUF2513 domain-containing protein	A0A0H4TJ44	Erysipelothrix_phage	2.2e-14	43.7
WP_099947283.1\|620229_620550_+	DUF771 domain-containing protein	NA	NA	NA	NA
WP_099947284.1\|620546_620729_+	hypothetical protein	NA	NA	NA	NA
WP_157771027.1\|620734_621052_+	hypothetical protein	NA	NA	NA	NA
WP_076789138.1\|621053_621749_+	Rha family transcriptional regulator	D2IYT0	Enterococcus_phage	1.3e-60	51.5
WP_076789099.1\|622028_622811_+	hypothetical protein	I2E8X7	Clostridium_phage	3.8e-45	44.4
WP_076789096.1\|623074_623368_+	hypothetical protein	NA	NA	NA	NA
WP_076789093.1\|623339_623642_+	hypothetical protein	NA	NA	NA	NA
WP_076789091.1\|623664_623958_+	hypothetical protein	NA	NA	NA	NA
WP_076789088.1\|623973_624267_+	hypothetical protein	NA	NA	NA	NA
WP_076789087.1\|624263_624494_+	hypothetical protein	D2J059	Enterococcus_phage	7.7e-07	41.2
WP_157771028.1\|624493_624634_+	hypothetical protein	NA	NA	NA	NA
WP_076789083.1\|624630_624966_+	hypothetical protein	NA	NA	NA	NA
WP_076789081.1\|625087_625510_+	single-stranded DNA-binding protein	B8R683	Lactobacillus_phage	6.6e-12	34.3
WP_099947537.1\|625598_626051_+	hypothetical protein	Q2I8C1	Bacillus_phage	2.0e-27	49.6
WP_099947286.1\|626094_626826_+	hypothetical protein	NA	NA	NA	NA
WP_076789076.1\|626967_627150_+	hypothetical protein	NA	NA	NA	NA
WP_076789073.1\|627206_627533_+	HNH endonuclease	A0A1B1IMY5	Lactococcus_phage	3.0e-44	74.5
WP_099947287.1\|627648_628893_+	hypothetical protein	O64275	Lactococcus_phage	1.4e-174	74.9
WP_099947288.1\|628876_629659_+	hypothetical protein	Q38114	Lactococcus_phage	4.9e-93	62.2
WP_157771029.1\|629700_629841_+	hypothetical protein	Q5ULN6	Lactobacillus_virus	2.7e-07	60.0
WP_099947289.1\|629909_631319_+	DEAD/DEAH box helicase family protein	A0A1P8BMS5	Lactococcus_phage	8.2e-224	76.1
WP_076789057.1\|631398_631857_+	phage scaffold protein	A0A141E167	Streptococcus_phage	7.1e-36	54.1
WP_076789056.1\|631860_632754_+\|capsid	phage capsid protein	Q7Y4I4	Streptococcus_phage	6.3e-105	62.7
WP_076789053.1\|632756_633095_+	hypothetical protein	A0A1P8BKC8	Lactococcus_phage	5.3e-12	42.1
WP_076789052.1\|633099_633519_+	hypothetical protein	Q7Y4I2	Streptococcus_phage	1.1e-43	67.9
WP_099947290.1\|633481_633820_+	hypothetical protein	A0A1P8BMP0	Lactococcus_phage	4.9e-42	73.1
WP_076789047.1\|633812_634049_+	hypothetical protein	A0A1P8BMT2	Lactococcus_phage	3.5e-23	69.2
WP_076789044.1\|634048_634384_+	hypothetical protein	A0A1B1IMT0	Lactococcus_phage	1.0e-36	69.4
WP_099947291.1\|634395_635022_+\|tail	phage tail protein	A0A141E164	Streptococcus_phage	1.6e-59	63.2
WP_099947292.1\|635018_635285_+	hypothetical protein	Q9F4J5	Streptococcus_phage	2.8e-16	54.8
WP_099947538.1\|635299_635686_+	hypothetical protein	E8ZDK1	Streptococcus_phage	1.3e-27	52.8
WP_099947293.1\|635675_638174_+\|tail	phage tail protein	Q77MU4	Lactococcus_phage	1.3e-115	56.3
WP_076789034.1\|638157_638886_+\|tail	phage tail family protein	A0A1B2APY0	Phage_Wrath	4.6e-45	40.3
WP_157771030.1\|639061_640426_+\|tail	phage tail protein	A0A1B2APX2	Phage_Wrath	1.6e-67	38.2
WP_099947295.1\|640426_643564_+	CotH kinase family protein	NA	NA	NA	NA
WP_099947296.1\|643630_643990_+	hypothetical protein	A0A0P0IZF9	Lactobacillus_phage	7.6e-09	44.4
WP_099947297.1\|643986_644217_+\|holin	holin	A0A142F1N6	Bacillus_phage	1.9e-13	44.7
647708:647724	attR	NA	NA	NA	NA

DBSCAN-SWA_3

701845 : 710139

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056948306.1\|701845_703141_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	8.0e-16	29.6
WP_099947307.1\|703253_703979_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	1.6e-37	39.9
WP_011374365.1\|703971_704232_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_056948308.1\|704228_704915_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_056948311.1\|704904_707130_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.8e-151	41.5
WP_011374368.1\|707105_708539_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.5e-51	33.9
WP_099947308.1\|708544_709573_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-64	44.3
WP_056948314.1\|709569_710139_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.6e-24	35.4

DBSCAN-SWA_4

1036329 : 1043774

Staphylococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025015768.1\|1036329_1037175_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	7.7e-20	44.2
WP_056947598.1\|1037371_1037872_-	dihydrofolate reductase	G3MBI7	Bacillus_virus	3.5e-28	38.0
WP_056947596.1\|1037882_1038833_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	2.7e-122	64.3
WP_056947594.1\|1039028_1040918_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.3e-48	29.3
WP_056947593.1\|1041030_1041492_-	hypothetical protein	NA	NA	NA	NA
WP_056947591.1\|1041560_1042754_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A249XS88	Mycobacterium_phage	3.9e-33	33.0
WP_076632489.1\|1042901_1043774_+	YitT family protein	M1Q1P6	Streptococcus_phage	8.2e-57	41.5

DBSCAN-SWA_5

1195834 : 1219904

Enterococcus_phage(37.5%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099947544.1\|1195834_1196446_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011374852.1\|1196466_1196787_+	hypothetical protein	NA	NA	NA	NA
WP_035146748.1\|1196779_1196962_+	hypothetical protein	NA	NA	NA	NA
WP_049762129.1\|1196958_1197612_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_056948772.1\|1197737_1198160_-	methylglyoxal synthase	NA	NA	NA	NA
WP_056948015.1\|1199073_1199769_-	LysM peptidoglycan-binding domain-containing protein	A0A096XT26	Enterococcus_phage	5.0e-17	40.3
WP_011374858.1\|1200483_1200735_-	hypothetical protein	NA	NA	NA	NA
WP_016265282.1\|1200961_1201336_-	hypothetical protein	E3W8I0	Leuconostoc_phage	4.1e-05	41.9
WP_099769415.1\|1202284_1203353_+\|transposase	IS3-like element IS1520 family transposase	Q6J1X2	Lactobacillus_phage	6.3e-27	34.9
WP_172952569.1\|1203616_1204648_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.1e-43	34.7
WP_011374861.1\|1205189_1205435_-	hypothetical protein	NA	NA	NA	NA
WP_056948883.1\|1205454_1205829_-	hypothetical protein	NA	NA	NA	NA
WP_056948015.1\|1205855_1206551_-	LysM peptidoglycan-binding domain-containing protein	A0A096XT26	Enterococcus_phage	5.0e-17	40.3
WP_011374864.1\|1206792_1208835_-	potassium transporter Kup	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	8.9e-70	35.5
WP_011374865.1\|1208992_1209166_+	hypothetical protein	NA	NA	NA	NA
WP_011374866.1\|1209298_1209778_+	nucleoside 2-deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	3.8e-16	37.2
WP_011374868.1\|1211559_1212279_-	aquaporin family protein	M1HCP3	Acanthocystis_turfacea_Chlorella_virus	1.7e-28	34.1
WP_076639187.1\|1212495_1213170_+	hypothetical protein	NA	NA	NA	NA
WP_011374870.1\|1213291_1213984_+	hypothetical protein	NA	NA	NA	NA
WP_011374871.1\|1214210_1214645_+	universal stress protein	NA	NA	NA	NA
WP_011374872.1\|1214902_1215046_+	hypothetical protein	NA	NA	NA	NA
WP_011374874.1\|1215456_1216044_+	C39 family peptidase	NA	NA	NA	NA
WP_056948729.1\|1216065_1216794_+	hypothetical protein	NA	NA	NA	NA
WP_011374876.1\|1216815_1217127_+	hypothetical protein	NA	NA	NA	NA
WP_056948732.1\|1217242_1218589_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_011374878.1\|1218690_1218939_+\|transposase	transposase	NA	NA	NA	NA
WP_157771031.1\|1219019_1219664_+\|transposase	transposase	NA	NA	NA	NA
WP_082267781.1\|1219667_1219904_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1319237 : 1327305

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099947393.1\|1319237_1320983_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.2e-46	27.7
WP_011374970.1\|1321124_1321355_-	YneF family protein	NA	NA	NA	NA
WP_016265356.1\|1321435_1321678_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_011374972.1\|1321812_1322427_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	1.1e-15	58.2
WP_096584669.1\|1322519_1323038_-	adenine phosphoribosyltransferase	A0A2K9L2N8	Tupanvirus	5.6e-13	32.2
WP_025016402.1\|1323061_1325374_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.8e-77	30.9
WP_011374975.1\|1325518_1326511_+	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	1.3e-47	36.6
WP_011374976.1\|1326596_1326962_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_011374977.1\|1326978_1327305_+	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	5.4e-06	34.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT960791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LT960790

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection