CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT897798	Vibrio cholerae isolate Vibrio cholerae str. BC1071 chromosome II	0 crisprs	csa3	0	0	2	0
NZ_LT897797	Vibrio cholerae isolate Vibrio cholerae str. BC1071 chromosome I	2 crisprs	cas3,DEDDh,DinG,csx1,csa3,WYL,TnsE_C	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

82470 : 142361

Vibrio_phage(84.0%)

tail,plate,transposase,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101411269.1\|82470_83511_-\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	1.3e-170	82.1
WP_084981268.1\|83776_84826_-	potassium channel protein	NA	NA	NA	NA
WP_084981269.1\|84827_85481_-	DUF2491 family protein	NA	NA	NA	NA
WP_084981270.1\|85541_86231_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_172440148.1\|86249_86645_-	DUF2170 family protein	NA	NA	NA	NA
WP_101411443.1\|86658_87825_-	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	6.0e-63	34.7
WP_084981273.1\|87842_88781_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_084981274.1\|88792_89203_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_101411445.1\|90127_91258_-	HlyD family secretion protein	NA	NA	NA	NA
WP_000478181.1\|91257_91647_-	DUF3302 domain-containing protein	NA	NA	NA	NA
WP_057568069.1\|91781_93362_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	3.3e-16	41.3
WP_000361580.1\|93342_94830_-	hypothetical protein	NA	NA	NA	NA
WP_001132380.1\|94984_96454_-	hypothetical protein	NA	NA	NA	NA
WP_000224891.1\|96518_97229_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_001195137.1\|97550_98504_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_000226962.1\|98493_99291_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.5e-17	31.2
WP_057568071.1\|99300_100710_+	deoxyribodipyrimidine photo-lyase	A0A1V0SGL1	Hokovirus	8.8e-61	31.7
WP_000270236.1\|100718_101639_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_001038496.1\|101724_101973_-	membrane protein	NA	NA	NA	NA
WP_001159703.1\|102514_103861_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.6e-41	29.0
WP_101411147.1\|105005_106328_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_101411447.1\|108312_108846_-	hypothetical protein	H9C146	Vibrio_phage	9.5e-32	62.2
WP_101411449.1\|108845_109757_-\|tail	phage tail protein	A0A1V0E875	Vibrio_phage	3.5e-50	63.0
WP_101411451.1\|109756_110344_-	DUF2313 domain-containing protein	A0A2I7S9L6	Vibrio_phage	9.6e-94	79.5
WP_101411453.1\|110328_111396_-\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	4.7e-147	71.8
WP_000095018.1\|111385_111835_-	phage GP46 family protein	M4MB61	Vibrio_phage	1.1e-54	73.6
WP_172440201.1\|111837_112419_-\|plate	phage baseplate assembly protein V	M4MCP6	Vibrio_phage	1.6e-72	72.6
WP_101411457.1\|112448_113525_-\|tail	phage tail protein	M1PVV2	Vibrio_phage	4.4e-161	75.4
WP_095459057.1\|113517_114837_-	DNA circularization N-terminal domain-containing protein	A0A2I7S9E8	Vibrio_phage	9.5e-166	67.6
WP_101411459.1\|114848_116600_-\|tail	phage tail tape measure protein	M4MHE6	Vibrio_phage	7.8e-216	68.3
WP_000996594.1\|116725_117070_-\|tail	phage tail assembly protein	M4MB64	Vibrio_phage	2.8e-45	81.4
WP_000024434.1\|117069_117423_-\|tail	phage tail tube protein	A0A2I7S9D5	Vibrio_phage	8.7e-42	68.4
WP_101411461.1\|117437_118922_-\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	7.8e-209	72.9
WP_000437436.1\|118924_119125_-	DUF2635 domain-containing protein	A0A2I7S9K4	Vibrio_phage	2.6e-06	43.5
WP_101411463.1\|119138_119738_-	hypothetical protein	M4MHF0	Vibrio_phage	1.3e-66	60.7
WP_101411465.1\|119734_120277_-	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	2.4e-75	76.5
WP_001029275.1\|120276_120711_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	3.3e-67	88.2
WP_101411467.1\|120716_121292_-	hypothetical protein	NA	NA	NA	NA
WP_101411469.1\|121357_122257_-\|head	Mu-like prophage major head subunit gpT family protein	M4MB71	Vibrio_phage	1.1e-109	63.7
WP_001262461.1\|122271_123225_-	hypothetical protein	M1Q578	Vibrio_phage	5.9e-93	58.0
WP_001249581.1\|123557_123842_-	hypothetical protein	NA	NA	NA	NA
WP_101411471.1\|123841_124477_-	hypothetical protein	A0A1V0E8A2	Vibrio_phage	5.1e-40	46.7
WP_071917805.1\|124473_124986_-	hypothetical protein	A0A0F6N5P8	Escherichia_phage	1.4e-32	47.5
WP_000246042.1\|124982_125231_-	hypothetical protein	NA	NA	NA	NA
WP_101411473.1\|125242_126016_-	hypothetical protein	M1PVV7	Vibrio_phage	3.1e-116	76.3
WP_101411475.1\|126111_127671_-	DUF935 domain-containing protein	M4M9P3	Vibrio_phage	7.4e-226	74.8
WP_101411477.1\|127667_129233_-	hypothetical protein	M4MHG0	Vibrio_phage	7.7e-231	78.0
WP_001195539.1\|129233_129815_-	DUF3486 family protein	M4MCR3	Vibrio_phage	3.0e-63	70.0
WP_000008606.1\|129826_130117_-	hypothetical protein	A0A2I7S9D8	Vibrio_phage	3.9e-40	82.3
WP_000230647.1\|130125_130428_-	DUF2730 family protein	M4M9P7	Vibrio_phage	3.6e-20	51.5
WP_001281317.1\|130427_130658_-	TraR/DksA C4-type zinc finger protein	M4MHG5	Vibrio_phage	8.8e-19	63.2
WP_001120998.1\|130654_131254_-	hypothetical protein	M1NVP4	Vibrio_phage	5.8e-46	57.3
WP_000828641.1\|131229_131517_-	hypothetical protein	M4MCR6	Vibrio_phage	3.3e-15	50.5
WP_032474402.1\|131516_132074_-	peptidoglycan-binding protein	A0A2I7S9B9	Vibrio_phage	2.2e-71	72.1
WP_001070512.1\|132158_132578_-	hypothetical protein	M4MHG9	Vibrio_phage	7.2e-27	43.0
WP_101411479.1\|132655_132904_-	hypothetical protein	NA	NA	NA	NA
WP_101411481.1\|132890_133469_-	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	1.1e-54	59.3
WP_000404914.1\|133481_133760_-	hypothetical protein	NA	NA	NA	NA
WP_000466683.1\|133762_133996_-	hypothetical protein	M4M9N5	Vibrio_phage	8.3e-25	67.5
WP_101411484.1\|134076_134283_-	hypothetical protein	NA	NA	NA	NA
WP_000762331.1\|134282_134813_-	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	2.2e-28	42.9
WP_101411486.1\|134809_135280_-	hypothetical protein	M4MHH2	Vibrio_phage	2.0e-49	62.9
WP_101411488.1\|135276_135474_-	hypothetical protein	NA	NA	NA	NA
WP_000551393.1\|135457_135700_-	hypothetical protein	M4MCS5	Vibrio_phage	4.2e-19	62.0
WP_101411490.1\|135692_135965_-	hypothetical protein	A0A2I7S9G2	Vibrio_phage	1.0e-21	61.2
WP_001192101.1\|135974_136589_-	DUF3164 family protein	M4MHH7	Vibrio_phage	2.6e-86	79.6
WP_000806306.1\|136575_136773_-	hypothetical protein	NA	NA	NA	NA
WP_001032732.1\|136769_137090_-	hypothetical protein	M4MB90	Vibrio_phage	1.8e-25	60.6
WP_032474409.1\|137099_137516_-	hypothetical protein	NA	NA	NA	NA
WP_000157299.1\|137525_137750_-	hypothetical protein	NA	NA	NA	NA
WP_000800334.1\|137757_138702_-	AAA family ATPase	M4M9P4	Vibrio_phage	1.1e-126	73.7
WP_101411492.1\|138728_140693_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A2I7S9A8	Vibrio_phage	3.1e-282	71.7
WP_000442472.1\|140740_140965_-	helix-turn-helix domain-containing protein	A0A2I7S995	Vibrio_phage	9.1e-29	83.8
WP_101411494.1\|141139_141883_+	helix-turn-helix transcriptional regulator	A0A2I7S9A5	Vibrio_phage	1.1e-102	73.9
WP_046126509.1\|142031_142361_-	DUF3486 family protein	M4MCT3	Vibrio_phage	1.2e-32	67.3

DBSCAN-SWA_2

964364 : 975505

Vibrio_phage(44.44%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101412113.1\|964364_965972_-	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	6.6e-129	45.3
WP_000117294.1\|968561_969191_-	hypothetical protein	A0A1I9KFD0	Aeromonas_phage	1.5e-23	33.3
WP_057573328.1\|969190_969790_-	hypothetical protein	NA	NA	NA	NA
WP_101412115.1\|969792_970257_-	hypothetical protein	A0A2R2Z354	Escherichia_phage	1.4e-26	48.6
WP_000149719.1\|970314_970695_-	hypothetical protein	M4MCI2	Vibrio_phage	1.8e-08	31.1
WP_101412117.1\|970709_971915_-	DUF4043 family protein	A0A088CC32	Shigella_phage	1.2e-135	58.5
WP_101412119.1\|971977_972982_-	ATPase	A0A1I9KFD1	Aeromonas_phage	1.5e-22	32.6
WP_032470296.1\|973099_973360_-	hypothetical protein	NA	NA	NA	NA
WP_000228309.1\|973371_973950_-	hypothetical protein	A0A1V0E8A2	Vibrio_phage	7.9e-24	36.9
WP_000835320.1\|973952_974174_-	hypothetical protein	NA	NA	NA	NA
WP_172440184.1\|974268_974445_-	hypothetical protein	NA	NA	NA	NA
WP_000359320.1\|974449_974608_-	hypothetical protein	NA	NA	NA	NA
WP_101412121.1\|974617_975136_-	secretion activator protein	Q6VT55	Vibrio_phage	8.0e-60	62.6
WP_001128531.1\|975193_975505_-\|holin	phage holin family protein	R9TR41	Vibrio_phage	2.2e-20	47.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LT897797

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT897797_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT897797_1

2532930-2533076

Orphan

Consensus_repeat	Method
AAAAGAAGGATGACAATAAAGTTTGAAACTTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_LT897797_1

>merge|NZ_LT897797|1|2532930-2533076|PILER-CR
GGAGGACATTAAAGTTTGAAACTTTTCTCTCGTGTAGAGTTTAGTACCAAGTAGCCTAGATAAAAGAAGGTAACAATAAAGTTTGAAACTAACTTAATGCCATAACTCTCTGCACAACAGAATTATGACAATAAAGTTTGAAACTTT

>NZ_LT897797|1|1|2532930-2533076|PILER-CR
GGAGGACATTAAAGTTTGAAACTTTTCTCTCG	TGTAGAGTTTAGTACCAAGTAGCCTAGATAAAAGAA
GGTAACAATAAAGTTTGAAACTAACTTAATGC	CATAACTCTCTGCACAACAGAAT
TATGACAATAAAGTTTGAAACTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT897797.1\|WP_101411129.1\|2543053_2543737_-\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_LT897797.1\|WP_101411115.1\|2529788_2531549_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225717
NZ_LT897797.1\|WP_078925056.1\|2534293_2534848_-\|copper-binding-protein	unknown	unknown	gnl\|CDD\|259873
NZ_LT897797.1\|WP_101411105.1\|2523800_2524892_+\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|131830
NZ_LT897797.1\|WP_101411127.1\|2541737_2543057_-\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_LT897797.1\|WP_101411111.1\|2527009_2527777_-\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|378053
NZ_LT897797.1\|WP_101411103.1\|2523609_2523798_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT897797.1\|WP_055467080.1\|2524992_2525238_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT897797.1\|WP_101411123.1\|2538042_2539752_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
NZ_LT897797.1\|WP_145958148.1\|2533714_2534275_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225418
NZ_LT897797.1\|WP_101411107.1\|2525405_2526131_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT897797.1\|WP_101411101.1\|2522830_2523607_+\|P-type-conjugative-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|184363
NZ_LT897797.1\|WP_101411131.1\|2544182_2544548_-\|DUF3316-domain-containing-protein	unknown	unknown	gnl\|CDD\|371718
NZ_LT897797.1\|WP_101411109.1\|2526628_2526904_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT897797.1\|WP_145958147.1\|2527863_2528706_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT897797.1\|WP_172440145.1\|2533254_2533569_-\|DUF411-domain-containing-protein	unknown	unknown	gnl\|CDD\|377246
NZ_LT897797.1\|WP_145958153.1\|2543767_2544109_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT897797.1\|WP_101411125.1\|2539765_2541157_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_LT897797.1\|WP_101411121.1\|2534917_2538043_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_LT897797.1\|WP_000028568.1\|2531805_2532885_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|227009

Protein	Function_ID	Function_description	E-value
NZ_LT897797.1\|WP_101411129.1\|2543053_2543737_-\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	7.05595e-97
NZ_LT897797.1\|WP_101411115.1\|2529788_2531549_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225717	COG3176, COG3176, Putative hemolysin [General function prediction only].	5.93764e-98
NZ_LT897797.1\|WP_078925056.1\|2534293_2534848_-\|copper-binding-protein	gnl\|CDD\|259873	cd04211, Cupredoxin_like_2, Uncharacterized Cupredoxin-like subfamily. Cupredoxins contain type I copper centers and are involved in inter-molecular electron transfer reactions. Cupredoxins are blue copper proteins because they have an intense blue color due to the presence of a mononuclear type 1 (T1) copper site. Structurally, the cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel. Some of these proteins have lost the ability to bind copper. Majority of family members contain multiple cupredoxin domain repeats; ceruloplasmin and coagulation factors V/VIII have six repeats; Laccase, ascorbate oxidase, and spore coat protein A, and multicopper oxidase CueO contain three repeats; and nitrite reductase has two repeats. Others are mono-domain cupredoxins, such as plastocyanin, pseudoazurin, plantacyanin, azurin, rusticyanin, stellacyanin, quinol oxidase and the periplasmic domain of cytochrome c oxidase subunit II.	3.56255e-47
NZ_LT897797.1\|WP_101411105.1\|2523800_2524892_+\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|131830	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL. The TrbL protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbL is a homolog of the F-type TraG protein (which is believed to be a mating pair stabilization pore-forming protein, pfam07916) as well as the vir system VirB6 protein. [Cellular processes, Conjugation].	6.21698e-62
NZ_LT897797.1\|WP_101411111.1\|2527009_2527777_-\|RES-family-NAD+-phosphorylase	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	2.00629e-15
NZ_LT897797.1\|WP_101411127.1\|2541737_2543057_-\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	4.84844e-104
NZ_LT897797.1\|WP_101411123.1\|2538042_2539752_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	1.82841e-100
NZ_LT897797.1\|WP_145958148.1\|2533714_2534275_-\|hypothetical-protein	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.25592e-06
NZ_LT897797.1\|WP_101411101.1\|2522830_2523607_+\|P-type-conjugative-transfer-protein-TrbJ	gnl\|CDD\|184363	PRK13879, PRK13879, P-type conjugative transfer protein TrbJ.	2.099e-113
NZ_LT897797.1\|WP_101411131.1\|2544182_2544548_-\|DUF3316-domain-containing-protein	gnl\|CDD\|371718	pfam11777, DUF3316, Protein of unknown function (DUF3316). This family of bacterial proteins has no known function. Several members are, however, annotated as being putative acyl-CoA synthetase, but this could not be confirmed.	1.0778e-13
NZ_LT897797.1\|WP_172440145.1\|2533254_2533569_-\|DUF411-domain-containing-protein	gnl\|CDD\|377246	pfam04214, DUF411, Protein of unknown function, DUF. The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.	1.08529e-36
NZ_LT897797.1\|WP_101411125.1\|2539765_2541157_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.65379e-18
NZ_LT897797.1\|WP_101411121.1\|2534917_2538043_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_LT897797.1\|WP_000028568.1\|2531805_2532885_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|227009	COG4663, FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	0

>NZ_LT897797.1|WP_000028568.1|2531805_2532885_+|TRAP-transporter-substrate-binding-protein
MSITAYLNKNRIVLALVLSTVLGTAQANDPPVYKLTLAETWGANTPILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDIQMGGWFKKEINSVDDLQGLKMRIPGFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAPYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAKEIIDSQQAYLSKVRDWTRISTQAYLNTNP
>NZ_LT897797.1|WP_101411115.1|2529788_2531549_+|GNAT-family-N-acetyltransferase
MLSTSPFVLPRKTPFGLGEHLAEWATGLKRLNQFYAQRPASGDTQAFLRFTLDVLGIDYQVVRGKLTHVPAQGATIVVANHPLGCVEGVILAELLLCVRSDVKILANQYLKLVPELTSLFIGVDVFEGADAAKANLHALRQAHKHLEQGGLLLMFPAGEVSQLVDSKQGRLEDKEWSQSVSRLVKKHQAHTVPVYIDGHNSTHFYLAGKIHPMLRTLMLGRELLNKQHTQIGIAIGEGISHSEVQHLCDQQLVNYLRLNTYLLQSSPVRNKTASDRSLPPVAERLPLADLLEDIAQLPYADHMLRHNQFDVYCTTADNIPSLMHEIGRIRELNFREVGEGTGCALDIDRFDRDYLHLFIWDREKNQLVGAYRLGLVDKLIEHKGISGLYSSTLFHYDQRFLNNMGNAIEMGRSVIDSQYQKSMAALLLLWKGIGTYVERHPQYTHLFGPVSISNDYSEQARRLLADTMTLHYYDSEQAELVMATNPLPTGQAQWNASLLTSLADLQLLSRVIARIDEGKGIPVLLRQYLGLNGKLVSFNVDPAFNNALDGLIVVDLRNVPTKTLARYMGQSEALRYLATHQYFSDI
>NZ_LT897797.1|WP_145958147.1|2527863_2528706_-|hypothetical-protein
MVSQKLKLVYLGAVLAITQYFFQEIIFTEAGQEKESKAYAYEFQLNYWGEKIYDKFGEIQKSGAASRIILGKNTITITPEFFVDLDTYQQEMKDMLRILEMQYQISLYLIKEIDDMASLGFATREELAEFKSEWDKFELLLEEHKKRKERLDTFFPEFMAAFSDKNKTLTEEQKVELTIKQSELLGELYSSDLLFMKYNSDVFKFVRELAEQSHYFIHVYEDIRLRYNARSSVQNTFKQTIISLITFISIIVGVRIEESHKYNKRLKRDCQRAAFPVPMS
>NZ_LT897797.1|WP_101411111.1|2527009_2527777_-|RES-family-NAD+-phosphorylase
MSFNSWRSFFTFSWAVNRKQRYILDEESQRFLNAIIETCQERELSIPKGATVWRAQNGHAWRPMYQTDPETDEQVHVDDVPIPFPHSRMKPLEDSASEGRANSKGIPCLYVATNKETAMSEIRPWLGAIVSLGVFKTTKDLKILDFSVEHGVSNTNFLFYFNEPSEEEKKKAVWSDIDNAFSKPVRNSDSTSDYAATQIISEFVKSRGYDGIAYKSSLADGHNIVLFDLASAEVLGCQIHEVSKVQFEFKRIEEH
>NZ_LT897797.1|WP_101411109.1|2526628_2526904_+|hypothetical-protein
MKRKAPNTEPPRPLTEAEKENFRKDMQESSKWAREELRKRKEAKASRSEYLGQDGPRPLTPEEIEELRQDMKDALAKMKEVLERRGRTKRS
>NZ_LT897797.1|WP_101411107.1|2525405_2526131_+|hypothetical-protein
MSRKNTKTTPTAIKGYSSEVRVVLRVVKQGSVPEATRRLIDKLKHFQDKPFVLRSLNSLISPHRDMQRRVRVRAFRVLTVLISYMDWATFRIGVPKTAFNDPVKHRAMIKRYEKMYNETMPESSWFRYIDKLTQAGYLNSANMDIRNQDGQIRGTAGLKWLTMKLMKELRIKSGWLDEQRNHALERLKKSGRCNVWPTYFSKIAQKKRVKAIVDEATQTESFQGQFDTGLTPLDLRYPPIH
>NZ_LT897797.1|WP_055467080.1|2524992_2525238_+|hypothetical-protein
MELHFPPQNWSDFGAFFAVMFLVMLAFYFAGQWAHSTKYSKQLYRLADVLEGIQNKVANKAYRGMMSLNKQTNKTKGWPFK
>NZ_LT897797.1|WP_101411105.1|2523800_2524892_+|P-type-conjugative-transfer-protein-TrbL
MKVRQVISLGLIIPSAAAHAAINNNGVLDDVALQFMTVASTWTGVITNYASWLFWLLGTISLVWTGGTLLLRQADIREFFAEFIRFIMTFGFFLWLLRNGPEFATSIIDSLRIIGAEAAGLPGELTPSEPISIALDIVAKSGNAYSFSSPFDSLAIFFITLLIVVCMTIVSANVLVALVSAWVLCYAGIFVLGFGGSRWTSDIAINYFRNVLGLALKLMTMTLMIGIAMSIMDSFLVNLSDDAPMRELLVIFIVALVLVLLIHSVPNIVAGLIPGAGAAASSGNISAGAMAGAAMTTGGMAAGAVMSTAGGASALQAAFKSATNSEMAEMMTGSIGSDSAKSEEPGTGDTPFARAAGMGRESN
>NZ_LT897797.1|WP_101411103.1|2523609_2523798_+|hypothetical-protein
MKITSSVALCLFTSLLLLGCDQSQDIKDIDCDSPGLTKAEKQQANCFWNMGDPTDRSQNKGF
>NZ_LT897797.1|WP_101411101.1|2522830_2523607_+|P-type-conjugative-transfer-protein-TrbJ
MNISTKILAAKIRLLALGGIIAHASPVWSGIPVADGVNLQQNIISAMEAVAQTAKQIQQYQSQLQQYENMLQNTMAPASYIWDQAQSTIHDLTQATNTLAYYQNQLGSLDEYLGKFQDVAYYRSSPCFSSSGCSETERTAMIQNRRLASESQKKANDALFNNLALQQDNLQTDARQLQRLQSAAQGADGQMAAIGYANQLASNQANQLLQIRSLLIAQQNAVGARMQADADKEALQQAAHEALFDFGSPTDRSQNRGF
>NZ_LT897797.1|WP_172440145.1|2533254_2533569_-|DUF411-domain-containing-protein
MEKKGYEVNVNHARDWSDVKQKFGMPNQLMSCHTAVIGGYMIEGHVPESDIKRLLEERPENISGIAAPGMPQHSPGMARPGQEYKGFNVVSFDKTGQMKLYNKY
>NZ_LT897797.1|WP_145958148.1|2533714_2534275_-|hypothetical-protein
MMLKRLFMLAGMFSVSLFTYASEDSISAGESTFLTVGGYGCIACHGLYGQGGGNVGGNIRGSSLNDLKYSLEHEQTMKLLGDALSEQDKINLADYMEHLGTFQLVDWMYEGTKEALLSVSIDSGEKSQLVVLNKTFESISIDLSPLAGKHLTLRVEPYETQHFEWIPEKGVYELSYGDEAVSINVK
>NZ_LT897797.1|WP_078925056.1|2534293_2534848_-|copper-binding-protein
MKKVLLATLFSVTSMSVMAGMDHSNMDHGSMNHADMDSSNMNHGDMDHSQMSNSMMSMEGMSDVGMPATGAKPDKVVHVVLADDMTIKFKKEVQIEPNDVVQFVVMNVGKIDHEFTIGSAKEQLEHREMMKKMPHHMHDSGNAVTVKPGKAKQLIWHFHGDSKVEFACNIPGHAEAGMIKKVSL
>NZ_LT897797.1|WP_101411121.1|2534917_2538043_-|efflux-RND-transporter-permease-subunit
MIGAIIRWSINNRFLVLVATFALVFGGLYSVKNTPVDALPDLSDVQVIIKTSYPGQAPQVVEDQVTYPLTTAMLSVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQVAPNLPPSAKPTLGPDATGVGWIYSYVLQDKTGQHDLAELRSLQDWFLKYELQTVDGVSEIATVGGMVKQYQVQIDPAKLRAYDLTLQQVNMAIQDGNQESGASVVEVAEAEHMVRTTGYLSSIDDIKALPLKVSKKGTPLLLGDVADIDLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVINNVKDKLNELQGSLPDGVEIVATYDRSTLINAAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILGAFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGDAAQEVGAPLFFSLLIITLSFVPVFALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYLIRGKILPEHKNPINKGLIALYKPLLNISLKYPKSMIVLAVALMGSAYYPTTKLGSEFIPPLDEGDLMYMPTTYPGISIGKARELIQQTNKLIKTVPEVETAWGKVGRADTATDPAPLTMIETVIQLKPRDEWRAGVTTESLRKEFDDLIQFPGLTNAWVMPIKTRIDMLATGIKTPIGIKIAGSDLTEIEKIGAQLEPILNNISGTASVYAERVAGGRYVTIDINRVAAARYGLSIKEIQQVVSTAVGGMNVGETIEGLERYPINVRYPQDYRNSVVKLQQLPLVTPSGARIALDDVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGSYVQEAKQAVAEQLDMPAGYSLAWSGQYEYMERAKERLGVVVPITIAIIMLLLYFSFRRVGEVMIIMLTLPLAMVGGLWLMHYLGYNFSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYTKLDAKEQNKSLSEDDLSHSIQEGAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKIRELKRN
>NZ_LT897797.1|WP_101411123.1|2538042_2539752_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MSTFKVASLALLIGSALGYGANIYLSGMNYNMVGMTASESKSSDEPLYWVAPMDPNYQRDKPGKSPMGMDLIPVYADDLNGSNDKPGTVKIDPAVENNLGVKTDTVKQEVLAPRIETVGYVAFDESQLWQTNVRVSGWVEKLYINAVGEKVNQGDTLFTLYSPELVKAQEELISAYKTQRKEMIQGATDRLITLGVDRNQIKSIARRGKASQFIEIKAPADGVIASLNIREGGYLSPAQAVISAGPLNQVWVDAEVFERQSHWIKQGSQASMTLDALPGREWNGEVDYVYPILDPSTRTLRVRLRFDNPQGELKPNMFANVALKPVSSDEVLTIPRSSVIRSGGMTRVVLAEGDGKYRSARIEVGRESADKIEVLKGLQQGERVVTSAHFMLDSESSQSADLSRINGVEPTAETAWATGEITDVMAGHRMLTINHKPVPEWDWPRMTMNFMVSENVEMDQLSKGQTIDFEMKKSESGQYEIVDYKVSELSINTEVWIDGDVSMLMADFGMVTLNHAPVADWSWDAGELNFSVGGDFELSGFQEGDKVRFLVEKQGSDYLLKELVKSEDK
>NZ_LT897797.1|WP_101411125.1|2539765_2541157_-|TolC-family-protein
MSIELNGFRAFKSLSLGVAIALYAMPALSHSGSNATPQTIAASTQQLNALIEAALANDTSRSQYAAQSQAMRETGVASSTLMDPKLKVGFGGLPVDSFKFDEDPMTNISVGLMQQFERGATLDLNQRKANQQADGMAYQVQVREREVANSITQLWLELGYLQYAETLIESNQRLMVEMEQYIQTNYSIGKSEAQDLLNTQLQVNKLDEKLQSNQQMQNRVVAQLSEWLGSEWLNRRSIDSNQAGYQLDWSHLNALLDQQTSDTQYYMLLNQHPMAQMADANISANRTQVEVAEQSYTPQFGVEVMYAYRQSDSMKGEPASDLLSAYLTMDIPLFTDNRQDKNVAAAQYQVGAAQYQKDTLLAQMNAQVVALMTDRENLAERIERYRSRLIPQSKARIEAVERGYQNNTAQFGDVITASTDELALQMELARLITDMNQVNSKLSMLLGGFEYKVSAPNTQYNEQ
>NZ_LT897797.1|WP_101411127.1|2541737_2543057_-|heavy-metal-sensor-histidine-kinase
MKKLLNQSIARKLVFMFVTASFVVLVVFALTIQHAIKNHFNEQDYRHLETKLRPLIGTVERDLDLFHSWNISAWVLNNKQVVKTNNETIDFPSELIGSSSYEWSVGNNRFHAFKFDYPEIEGGAVVLAMDVTHHKVFFDKLNTILFWTLVLTLSLSGTYALIIVRNGLQPLKQLKEYIAQVNTSNLSMRIPSDSLPKELSSLAISQNEMLERLQEGYLRLSEFSSDIAHELRTPLNNIMTQTQVTLGLERSIEEYQDILVSNLEELGRFNKTISDTLYLAKSENKLLHKIEEMLDLKEVITPLLEYYEVLAEEKNVRFTFDGSSTLLGDKDMLQRAFGNVLSNALRHCFHNTEISVVITESETTNTVTISNIGEPISTGSLPYIFKRFYRSDKSRVHNGSVGAGLGLPIAKAIMKAHNGDILVNAKDERSEFVFIFNKL
>NZ_LT897797.1|WP_101411129.1|2543053_2543737_-|heavy-metal-response-regulator-transcription-factor
MKLLVVEDEEKAGSYLKKGLMESGYNVDLSTDGVDALYLATTNEYDLIVLDIMLPKLNGWQLLQTLRSSELTTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFVELLARVKNALRHQAATVKTESVLCVADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAVWDMNFDSDTNVIDAAVKRLRSKIDKPYQNKLIQTVRGVGYKLDDGVE
>NZ_LT897797.1|WP_145958153.1|2543767_2544109_-|hypothetical-protein
MIDKISIIFQEQKLDDIESILAEEGVRNFTISQVQERGRHTNVIDTHALNTHYQLDVFIGHSHTQSLVGALLDTLCVSQEGNGVTSVIENVLLFDNNMKKQISNPSYNHKLDV
>NZ_LT897797.1|WP_101411131.1|2544182_2544548_-|DUF3316-domain-containing-protein
MNLLNKMLLTSSILLTSAAAIAQPLYTSGNYTSRVDHKTVSTDAVGSKQEAYTLGAEKLLEFEGMSGRDLNAALLLIRSYDKTHLEDGGYVTVQERLNTEGQLEYVAKVHLYVHYKERDAK

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Crispr_ID: NZ_LT897797_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT897797_2

2606034-2606277

Orphan

Consensus_repeat	Method
AAAATGTGCCTCCTTAGCTCAGTCGGTAGAGCAACGGACTGATAATCCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_LT897797_2

>merge|NZ_LT897797|2|2606034-2606277|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGATTCCGGCAGCCGGCACCATTTAAAATTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCACTATTAAAAGTTGTGCCATAGACACAATAAAAATTGTTCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCG

>NZ_LT897797|2|2|2606034-2606277|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGG	TCGCCAGTTCGATTCCGGCAGCCGGCACCATTTAAAA
TTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTG	TCGGTGGTTCGATTCCGCCTCGAGGCACCACTATTAAAAGTTGTGCCATAGACACAATAAAAAT
TGTTCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT897797.1\|WP_000095781.1\|2613942_2614935_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_LT897797.1\|WP_000805056.1\|2601236_2602157_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NZ_LT897797.1\|WP_101411163.1\|2612657_2613953_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_LT897797.1\|WP_059260595.1\|2616226_2617036_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
NZ_LT897797.1\|WP_101411155.1\|2599245_2599848_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_LT897797.1\|WP_000546924.1\|2609240_2610095_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_LT897797.1\|WP_001087261.1\|2597835_2598393_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|223833
NZ_LT897797.1\|WP_101411157.1\|2599841_2601017_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_LT897797.1\|WP_001243262.1\|2614948_2615764_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_LT897797.1\|WP_071180988.1\|2610253_2612605_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_LT897797.1\|WP_000741916.1\|2598392_2598683_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_LT897797.1\|WP_000005581.1\|2602267_2602987_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_LT897797.1\|WP_000954087.1\|2617694_2618168_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|182143
NZ_LT897797.1\|WP_000383338.1\|2615835_2616216_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_LT897797.1\|WP_101411153.1\|2598728_2599160_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NZ_LT897797.1\|WP_101411159.1\|2603226_2604288_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_LT897797.1\|WP_095471821.1\|2617184_2617682_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_LT897797.1\|WP_101411161.1\|2604675_2605803_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_LT897797.1\|WP_084980917.1\|2606568_2608194_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_LT897797.1\|WP_000124738.1\|2604301_2604574_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059

Protein	Function_ID	Function_description	E-value
NZ_LT897797.1\|WP_000095781.1\|2613942_2614935_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_LT897797.1\|WP_000805056.1\|2601236_2602157_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_LT897797.1\|WP_101411163.1\|2612657_2613953_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	4.71765e-156
NZ_LT897797.1\|WP_059260595.1\|2616226_2617036_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	6.06474e-169
NZ_LT897797.1\|WP_101411155.1\|2599245_2599848_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	1.24719e-127
NZ_LT897797.1\|WP_000546924.1\|2609240_2610095_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.60415e-153
NZ_LT897797.1\|WP_001087261.1\|2597835_2598393_+\|YggT-family-protein	gnl\|CDD\|223833	COG0762, COG0762, Predicted integral membrane protein [Function unknown].	2.77868e-12
NZ_LT897797.1\|WP_101411157.1\|2599841_2601017_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_LT897797.1\|WP_001243262.1\|2614948_2615764_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.27746e-146
NZ_LT897797.1\|WP_071180988.1\|2610253_2612605_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_LT897797.1\|WP_000741916.1\|2598392_2598683_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	2.72949e-61
NZ_LT897797.1\|WP_000005581.1\|2602267_2602987_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.57395e-111
NZ_LT897797.1\|WP_000954087.1\|2617694_2618168_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	7.45224e-67
NZ_LT897797.1\|WP_000383338.1\|2615835_2616216_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	1.16069e-74
NZ_LT897797.1\|WP_101411153.1\|2598728_2599160_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	5.31813e-66
NZ_LT897797.1\|WP_101411159.1\|2603226_2604288_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_LT897797.1\|WP_095471821.1\|2617184_2617682_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	2.51448e-90
NZ_LT897797.1\|WP_101411161.1\|2604675_2605803_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	2.07125e-156
NZ_LT897797.1\|WP_084980917.1\|2606568_2608194_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	5.33084e-58
NZ_LT897797.1\|WP_000124738.1\|2604301_2604574_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	5.47988e-59

>NZ_LT897797.1|WP_101411161.1|2604675_2605803_+|membrane-bound-lytic-murein-transglycosylase-MltC
MRKLVLCITALLLSGCSREFIEKIYDVDYEPTNRFAKNLAELPGQFQKDTAALDALINSFSGNIEKRWGRRELKIAGKNNYVKYIDNYLSRSEVNFTEGRIIVETVSPIDPKAHLRNAIITTLLTPDDPAHVDLFSSKDIELKGQPFLYQQVLDQDGQPIQWSWRANRYADYLIANHLKVKQVDFKKAYYVEIPMVKDQIDIRGYKYANIVRKASRKYDIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFKLVKNRSGEPSPEYLFNPENNIDTGTAYFYILKNRYLKEVRHPTSLEYSMISAYNGGTGGVLSTFSSDRQRAMRDLNALQPNQVYWALTKKHPNAEARRYLEKVTKFKKEFNAG
>NZ_LT897797.1|WP_000124738.1|2604301_2604574_+|oxidative-damage-protection-protein
MARTVFCTRLQKEADGLDFQLYPGELGKRIFDNICKEAWAQWQTKQTMLINEKKLNMMDPEHRKLLEQEMVNFLFEGKEVHIEGYTPPAK
>NZ_LT897797.1|WP_101411159.1|2603226_2604288_+|A/G-specific-adenine-glycosylase
MTPFAQAILTWYDAYGRKNLPWQQNKNAYRVWLSEIMLQQTQVATVIPYFERFLERFPTVQALAAAPQDEVLHFWTGLGYYARARNLHKAAKMVVSEYGGEFPTDLEQMNALPGVGRSTAAAVLSSVYKKPHAILDGNVKRTLARCFAVEGWPGQKSVENQLWHYAEMHTPKVDVDKYNQAMMDMGAMICTRSKPKCSLCPVESFCLAKQQGNPQEYPGKKPKTDKPVKATWFVMLYHDNAVWLEQRPQSGIWGGLYCFPQSEIANIQTTIDQRAIGDSTITSQKTLIAFRHTFSHYHLDITPILLQLSRKPDIVMEGSKGLWYNLSQPDEIGLAAPVKQLLHSLPFDIDSHI
>NZ_LT897797.1|WP_000005581.1|2602267_2602987_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVITQEYTEDGKVLRRIRSFVRREGRLTKGQEAAMKECWPTMGIDYQPELLDWQQVFGNDNPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASAREAGVTNLRVMCHDAVEVFAHMIPDNSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLIIGSGVFHMATDWENYAEHMIEVMNQAPGFANLATDGDYIPRPDERPLTKFEQRGHRLGHGVWDIKYQRTA
>NZ_LT897797.1|WP_000805056.1|2601236_2602157_-|glutaminase-B
MKPTAEILASIIEEVRPLTGQGKVADYIPALAKVPSEKLGIAVFTNQGEVITAGDAQEGFSIQSISKVLSLTLAMGLYQPDELWSRVGKEPSGQAFNSLIQLEMEHGIPRNPFINAGAIVVCDMLQSRLSAPRQRLLEFVRQLSGEPLIAYDKVVAASEMMHSDRNAAIAYLMRSFGNFHNEVIPVLHNYFHACALKMSCVELAKTFSYLANKGVSVVTGETVITPTQSKQTNALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPALDQSGNSLAGTRALELLAQRIGRSIF
>NZ_LT897797.1|WP_101411157.1|2599841_2601017_+|radical-SAM-family-heme-chaperone-HemW
MLTPPPLSLYIHIPWCVQKCPYCDFNSHAQKGEIPEQEYLDALLEDLDRDIERYQLKGDPRLLHSIFIGGGTPSLISAEGIARLLQGVAERIVFKPDIEITMEANPGTIEAQRFAGYRTAGVTRISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPEQALADLDQAIALNPPHLSWYQLTIEPNTLFYSKPPKLPDEDALWDIFELGHQKLSDAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLAALNNLAKAYLDSEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWAISEGYLSEDDQHWQITEKGKLFLNDLLEAFMADEEE
>NZ_LT897797.1|WP_101411155.1|2599245_2599848_+|XTP/dITP-diphosphatase
MKKIVLATGNQGKVREMADLLADFGFDVVAQSEFNVPEVAETGTTFIENAIIKARHAAQITGLPAIADDSGLEVDYLNGAPGIYSARYAGEHASDGDNLNKLLVAMQDVPDDQRSARFHCVLVLMRHADDPTPIVCHGKWEGKILTAPHGSNGFGYDPIFWVPEENCASAELEPVRKKQLSHRGKALQKLFKAIEEQRTC
>NZ_LT897797.1|WP_101411153.1|2598728_2599160_+|DUF4426-domain-containing-protein
MRKWMMSLLLTLLALPASAEQQKTIKDIEVHYSAFNSTFLTPKVASSYQLTRNGYTAILNISVLDRASLGKPATEAKLTGHTKNLIGNLRELTFKQVKEGSAIYYLAEVPISNEEMLTFDIDVDAGLKGAGKLTFSQKFYTEQ
>NZ_LT897797.1|WP_000741916.1|2598392_2598683_+|YggU-family-protein
MAAVWREGDDLLLRLYIQPKASRDSIVGLHGEELKVAITAPPIDGKANAHLSKYLAKLCKVAKGSVVIEKGELGRHKQVRILQPSQIPTEIAALTE
>NZ_LT897797.1|WP_001087261.1|2597835_2598393_+|YggT-family-protein
MNSLSFLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLATIVFAYVLCVLKFMALVLIASSGSVSFSADFLFLGLLSLIKAAGGLLFWVLLIRAILSWVSQGRSPIEYVFHQLTEPMLAPIRRIIPVMGGFDLSILVLFIVLQFANFLMGDVIGPIWYQL
>NZ_LT897797.1|WP_084980917.1|2606568_2608194_+|methyl-accepting-chemotaxis-protein
MKLKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVCSAVQAVAQGRIRREFAIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDNQQQSTAMIATAMTEMASSANQVADSARNTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEVTR
>NZ_LT897797.1|WP_000546924.1|2609240_2610095_-|co-chaperone-DjlA
MHIFGKILGAFFGFLFGGPFGAIFGIFLGHQFDKARRLNQAGFQSGTFGAGPSQAERQEEFFKSAFSVMGHVAKAKGQVTKEEIQLATIMMDRMNLTLEQKRAAQDAFRDGKESDFPLEQVLERVKIATGGRFDLLQFFLELQVSSAFADGDVHPSERQVLHRIARGLGFSSEQLERRLRMQEAAFRFQQGGGFGGSQQQSHSGQQWQQPSSRHQLADAYEVLGVSESASAQEVKRAYRKLMNEHHPDKLMAKGLPPEMMNVAKEKSQQIQHAYELIRKEKGIK
>NZ_LT897797.1|WP_071180988.1|2610253_2612605_+|LPS-assembly-protein-LptD
MSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDSWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMKYLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSVAGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN
>NZ_LT897797.1|WP_101411163.1|2612657_2613953_+|peptidylprolyl-isomerase-SurA
MKLWKTTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQPLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASVAQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDRLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEVLKDEKDEQ
>NZ_LT897797.1|WP_000095781.1|2613942_2614935_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MSSKRIIVTAGEPAGIGPDLVLALSAQDWPHQLVVCADKALLTQRAVQLGIQVKLLDYQRDNPVQAQQAGTLLVEHIPLAEPVVAGQLNPANGHYVLKTLERAAKGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSKTPLVVMMLATEGLRTALVTTHLPLAEVPQAITCERLEQIVHILHKDLVEKFAIAEPKIYVCGLNPHAGEDGVLGMEEIETITPTLQRLREQYGMQLVGPLPADTIFSEKYLQQADAVLGMYHDQVLPVLKYKGFGRSVNITLGLPFIRTSVDHGTALDLAGTGQADAGSFWTALAYAIELVDKKAQ
>NZ_LT897797.1|WP_001243262.1|2614948_2615764_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MRNDVHLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWLDATHKTHA
>NZ_LT897797.1|WP_000383338.1|2615835_2616216_+|Co2+/Mg2+-efflux-protein-ApaG
MDVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLMIDEQGESFTVEIEPFRLAVPHVLN
>NZ_LT897797.1|WP_059260595.1|2616226_2617036_+|symmetrical-bis(5'-nucleosyl)-tetraphosphatase
MANYIVGDIQGCFDELQQLLKQAEFNSQLDTLWFAGDLVARGPKSLETLRFAYQLGDAARVVLGNHDLHLLSVALGHHSAKRRDQTQAILDAPDASPLLDWLRQQPLLAEHQEFVLCHAGISPQWDLATARQAAQEVESVLRSPEWSTLIEQMYSDQPDAWHPTLQGIDRLRYIVNAFTRMRFCFPDGRLDMQCKLPPKEVTDGSLLPWFQLPQRIALEKTVIFGHWAALEGYVSETVIGLDTGCVWGGTLTMLRWEDKHYFSQAALPA
>NZ_LT897797.1|WP_095471821.1|2617184_2617682_-|type-3-dihydrofolate-reductase
MMISMIAAMADQRIIGKDNQMPWHLPADFAWFKRCTLGKPVVMGRKTYQSIGRPLPGRHNIVISRDVSLQIEGVDVVTSIEAALAKAGEVDEVMIIGGGSLYAACLPMAHKLYITEIHAKLEGDTQFPEWGSDWLERCREHYPADEKNAYGMDFVIFERPNPLPI
>NZ_LT897797.1|WP_000954087.1|2617694_2618168_-|threonine/serine-exporter-family-protein
MLSWDLFFGLLNDMFFAAIPAVGFALVFNVPVPALKYCALGGALGHGSRYLMMHFGVPIEWASFFAATLVGMVGVYWSRRFLAHPKVFTVAALIPMVPGVFAFKAMIALVEINHVGFSPELMEALLENFLKAMFIIAGLAVGLAVPGLLFYRRKPII

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT897797_2	2.1\|2606083\|37\|NZ_LT897797\|PILER-CR	2606083-2606119	37	NC_049942	Escherichia phage JLK-2012, complete sequence	23524-23560	3	0.919
NZ_LT897797_2	2.1\|2606083\|37\|NZ_LT897797\|PILER-CR	2606083-2606119	37	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35428-35464	4	0.892

1. spacer 2.1|2606083|37|NZ_LT897797|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 3, identity: 0.919

taggtcgccagttcgattccggcagccggcaccattt	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatat	Protospacer
.*********************.************ *

2. spacer 2.1|2606083|37|NZ_LT897797|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatc	Protospacer
******.***************.*********** *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

695307 : 701924

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101410228.1\|695307_696441_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.0e-64	40.1
WP_000366561.1\|696452_697703_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.5e-99	49.5
WP_000543544.1\|697802_698252_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_101410230.1\|698277_699381_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.5e-44	33.3
WP_000493874.1\|699385_700039_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-31	38.2
WP_001122865.1\|700079_701189_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
WP_000864130.1\|701453_701924_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7

DBSCAN-SWA_2

2230844 : 2238036

Anguillid_herpesvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162850.1\|2230844_2231273_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4
WP_000107237.1\|2231476_2232766_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.7e-34	34.3
WP_000872176.1\|2232985_2233180_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_001124187.1\|2233227_2233566_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_101410982.1\|2233579_2235430_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.1e-106	41.1
WP_001105750.1\|2235453_2235969_-	co-chaperone HscB	NA	NA	NA	NA
WP_000301571.1\|2236017_2236341_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_000331703.1\|2236401_2236785_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000775249.1\|2236821_2238036_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	8.8e-33	30.8

DBSCAN-SWA_3

2470729 : 2477954

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101411053.1\|2470729_2471617_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	4.1e-56	41.1
WP_101411359.1\|2471885_2474474_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	7.6e-34	23.2
WP_000116735.1\|2474566_2475574_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.0e-35	34.2
WP_101411055.1\|2475647_2476583_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	7.8e-05	34.7
WP_000002982.1\|2476582_2477209_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	52.1
WP_000698379.1\|2477201_2477954_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.0e-69	53.3

DBSCAN-SWA_4

2512595 : 2583640

Klebsiella_phage(14.29%)

transposase,integrase

attL 2533001:2533021|attR 2566738:2566758

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101411091.1\|2512595_2513963_-\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	4.1e-39	31.0
WP_084981219.1\|2514352_2515444_+\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	9.6e-47	38.2
WP_101411093.1\|2515658_2518274_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_101411095.1\|2518276_2518603_+	hypothetical protein	NA	NA	NA	NA
WP_047459450.1\|2519731_2519971_+	DNA-binding protein	NA	NA	NA	NA
WP_084981215.1\|2519972_2520317_+	TraK family protein	NA	NA	NA	NA
WP_101411097.1\|2520660_2521023_+	conjugal transfer transcriptional regulator TraJ	NA	NA	NA	NA
WP_101411099.1\|2521028_2522801_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_101411101.1\|2522830_2523607_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_101411103.1\|2523609_2523798_+	hypothetical protein	NA	NA	NA	NA
WP_101411105.1\|2523800_2524892_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_055467080.1\|2524992_2525238_+	hypothetical protein	NA	NA	NA	NA
WP_101411107.1\|2525405_2526131_+	hypothetical protein	NA	NA	NA	NA
WP_101411109.1\|2526628_2526904_+	hypothetical protein	NA	NA	NA	NA
WP_101411111.1\|2527009_2527777_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_145958147.1\|2527863_2528706_-	hypothetical protein	NA	NA	NA	NA
WP_101411115.1\|2529788_2531549_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000028568.1\|2531805_2532885_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
2533001:2533021	attL	NA	NA	NA	NA
WP_172440145.1\|2533254_2533569_-	DUF411 domain-containing protein	NA	NA	NA	NA
WP_145958148.1\|2533714_2534275_-	hypothetical protein	NA	NA	NA	NA
WP_078925056.1\|2534293_2534848_-	copper-binding protein	NA	NA	NA	NA
WP_101411121.1\|2534917_2538043_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_101411123.1\|2538042_2539752_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_101411125.1\|2539765_2541157_-	TolC family protein	NA	NA	NA	NA
WP_101411127.1\|2541737_2543057_-	heavy metal sensor histidine kinase	NA	NA	NA	NA
WP_101411129.1\|2543053_2543737_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	3.9e-30	33.8
WP_145958153.1\|2543767_2544109_-	hypothetical protein	NA	NA	NA	NA
WP_101411131.1\|2544182_2544548_-	DUF3316 domain-containing protein	NA	NA	NA	NA
WP_145958149.1\|2544805_2545762_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_074373097.1\|2545858_2546101_-	hypothetical protein	NA	NA	NA	NA
WP_074373098.1\|2546120_2546408_-	hypothetical protein	NA	NA	NA	NA
WP_101411133.1\|2546741_2547650_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.5e-103	60.5
WP_042521796.1\|2548476_2550237_+	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_042521878.1\|2550251_2551076_+	copper resistance protein B	NA	NA	NA	NA
WP_095664554.1\|2551116_2551605_+	cupredoxin family protein	NA	NA	NA	NA
WP_095664556.1\|2551849_2552581_-	hypothetical protein	NA	NA	NA	NA
WP_095664557.1\|2552561_2552867_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_095664560.1\|2553570_2553984_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_095664561.1\|2554490_2554871_-	DUF3316 domain-containing protein	NA	NA	NA	NA
WP_101411135.1\|2555409_2558130_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.1e-98	33.8
WP_095664563.1\|2558131_2558596_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_101411137.1\|2558955_2560584_-	transcriptional regulator	NA	NA	NA	NA
WP_101411139.1\|2560593_2562111_-	TniQ family protein	NA	NA	NA	NA
WP_101411141.1\|2562113_2563772_-	AAA family ATPase	NA	NA	NA	NA
WP_101411143.1\|2563771_2565871_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_101411145.1\|2565842_2566673_-	TnsA endonuclease N-terminal domain-containing protein	NA	NA	NA	NA
WP_000334132.1\|2566811_2568644_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HVL7	Paramecium_bursaria_Chlorella_virus	1.1e-130	43.0
2566738:2566758	attR	NA	NA	NA	NA
WP_001906605.1\|2568706_2569477_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000751457.1\|2569904_2571317_+	pyruvate kinase PykF	NA	NA	NA	NA
WP_000764703.1\|2571850_2572546_-	oxidative stress defense protein	NA	NA	NA	NA
WP_001214483.1\|2572646_2573543_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_001104702.1\|2573707_2574343_+	amino acid transporter	NA	NA	NA	NA
WP_000896747.1\|2574406_2575270_-	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA
WP_000034368.1\|2575566_2576643_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000111267.1\|2576798_2577962_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_000946626.1\|2578110_2579136_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_000086053.1\|2579287_2581246_-	ligand-gated channel protein	A0A0P0I887	Acinetobacter_phage	5.8e-10	32.1
WP_001153529.1\|2581390_2582287_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_101411147.1\|2582317_2583640_-\|transposase	IS4 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT897798

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LT897797

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection