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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT605205 Proteiniphilum saccharofermentans strain M3/6 chromosome I 11 crisprs cas9,cas1,cas2,DEDDh,cas6,cas8b1,cas7b,cas5,cas3,cas4,WYL 1 26 4 0

Results visualization

1. NZ_LT605205
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_1 361763-361865 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_2 926404-926495 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_3 1544926-1547893 TypeII NA
38 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_4 1735998-1736107 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_5 2011807-2011900 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_6 2222274-2229581 TypeI-B NA
113 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_7 2404628-2404741 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_8 3219986-3220084 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_9 3313410-3313523 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_10 3607003-3607102 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT605205_11 4320233-4320324 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT605205_4 4.1|1736026|54|NZ_LT605205|CRISPRCasFinder 1736026-1736079 54 NZ_LT605205.1 1848437-1848490 2 0.963
NZ_LT605205_4 4.1|1736026|54|NZ_LT605205|CRISPRCasFinder 1736026-1736079 54 NZ_LT605205.1 1848447-1848500 2 0.963

1. spacer 4.1|1736026|54|NZ_LT605205|CRISPRCasFinder matches to position: 1848437-1848490, mismatch: 2, identity: 0.963

gaatgagattgaatgagattgaatgagattgaatgagattgaatgagattgaat	CRISPR spacer
gaacgagattgaatgagattgaatgagattgaacgagattgaatgagattgaat	Protospacer
***.*****************************.********************

2. spacer 4.1|1736026|54|NZ_LT605205|CRISPRCasFinder matches to position: 1848447-1848500, mismatch: 2, identity: 0.963

gaatgagattgaatgagattgaatgagattgaatgagattgaatgagattgaat	CRISPR spacer
gaatgagattgaacgagattgaatgagattgaatgagattgaacgagattgaat	Protospacer
*************.*****************************.**********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013586 Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence 140829-140858 4 0.867
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NC_028671 Enterococcus phage vB_EfaS_IME197, complete genome 21008-21037 5 0.833
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 AP013738 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S40-C68, *** SEQUENCING IN PROGRESS *** 26492-26521 5 0.833
NZ_LT605205_3 3.21|1546510|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546510-1546539 30 MG209611 Aphanizomenon phage vB_AphaS-CL131, complete genome 53558-53587 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP006991 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence 576693-576722 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013524 Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence 124756-124785 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013553 Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence 135452-135481 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013559 Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence 137537-137566 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013576 Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence 136503-136532 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013548 Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence 136501-136530 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013533 Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence 136501-136530 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013543 Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence 139913-139942 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013564 Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence 135452-135481 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP013570 Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence 136503-136532 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 NZ_CP021128 Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence 526725-526754 5 0.833
NZ_LT605205_3 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547203-1547232 30 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 585025-585054 5 0.833
NZ_LT605205_3 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547587-1547616 30 NZ_CP054832 Staphylococcus saprophyticus strain UTI-045 plasmid pUTI-045-1, complete sequence 21164-21193 5 0.833
NZ_LT605205_3 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547587-1547616 30 NZ_CP053076 Staphylococcus aureus strain SA01 plasmid pSA01-tet, complete sequence 20996-21025 5 0.833
NZ_LT605205_3 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547587-1547616 30 NZ_CP017461 Staphylococcus nepalensis strain JS1 plasmid pSNJS101, complete sequence 30183-30212 5 0.833
NZ_LT605205_3 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547587-1547616 30 NZ_CP054008 Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3 383-412 5 0.833
NZ_LT605205_3 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547587-1547616 30 NZ_CP054008 Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3 17839-17868 5 0.833
NZ_LT605205_6 6.47|2225260|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2225260-2225293 34 NC_019521 Sphingomonas phage PAU, complete genome 209407-209440 5 0.853
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NZ_CP053657 Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence 143334-143363 6 0.8
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NZ_CP013615 Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence 76572-76601 6 0.8
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NC_020292 Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence 51697-51726 6 0.8
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NC_014634 Ilyobacter polytropus DSM 2926 plasmid pILYOP02, complete sequence 78569-78598 6 0.8
NZ_LT605205_3 3.9|1545588|29|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545588-1545616 29 NZ_CP017574 Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence 37152-37180 6 0.793
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 261745-261774 6 0.8
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 261785-261814 6 0.8
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 NZ_CP028887 Borrelia turcica IST7 plasmid lp32-B, complete sequence 21095-21124 6 0.8
NZ_LT605205_3 3.39|1547817|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547817-1547846 30 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 1108625-1108654 6 0.8
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NZ_CP011156 Bacillus cereus strain HN001 plasmid pRML01, complete sequence 396403-396432 7 0.767
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NZ_CP014283 Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence 174535-174564 7 0.767
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 LR214964 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 10 25928-25957 7 0.767
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NZ_CP038863 Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence 64660-64689 7 0.767
NZ_LT605205_3 3.3|1545127|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545127-1545156 30 NZ_CP042620 Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence 2346-2375 7 0.767
NZ_LT605205_3 3.3|1545127|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545127-1545156 30 KY984068 Erwinia phage vB_EamM_Y3, complete genome 174942-174971 7 0.767
NZ_LT605205_3 3.9|1545588|29|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545588-1545616 29 NZ_CP032413 Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence 156063-156091 7 0.759
NZ_LT605205_3 3.9|1545588|29|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545588-1545616 29 NZ_CP019641 Planococcus sp. Y42 plasmid unnamed1, complete sequence 145725-145753 7 0.759
NZ_LT605205_3 3.9|1545588|29|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545588-1545616 29 NZ_CP020864 Paenibacillus sp. Cedars plasmid unnamed1, complete sequence 53758-53786 7 0.759
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 KX119204 Helicobacter phage Sw577G, complete genome 14927-14956 7 0.767
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 AP013587 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S30-C206, *** SEQUENCING IN PROGRESS *** 6433-6462 7 0.767
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 AP013590 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S35-C247, *** SEQUENCING IN PROGRESS *** 4815-4844 7 0.767
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 AP013585 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S26-C235, *** SEQUENCING IN PROGRESS *** 6195-6224 7 0.767
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 NZ_CP031220 Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence 81299-81328 7 0.767
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 AP013582 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S24-C232, *** SEQUENCING IN PROGRESS *** 905-934 7 0.767
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 AP013592 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S41-C163, *** SEQUENCING IN PROGRESS *** 4766-4795 7 0.767
NZ_LT605205_3 3.14|1545971|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545971-1546000 30 MT811961 Vibrio phage vB_pir03, complete genome 159879-159908 7 0.767
NZ_LT605205_3 3.19|1546356|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546356-1546385 30 MK295204 Shigella phage vB_SdyM_006, complete genome 22677-22706 7 0.767
NZ_LT605205_3 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547280-1547309 30 NC_006462 Thermus thermophilus HB8 plasmid pTT27, complete sequence 95712-95741 7 0.767
NZ_LT605205_3 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547280-1547309 30 NC_017273 Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence 290364-290393 7 0.767
NZ_LT605205_3 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547280-1547309 30 NZ_CP014142 Thermus parvatiensis strain RL plasmid pTP143, complete sequence 110701-110730 7 0.767
NZ_LT605205_3 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547280-1547309 30 NC_005838 Thermus thermophilus HB27 plasmid pTT27, complete sequence 57567-57596 7 0.767
NZ_LT605205_3 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547280-1547309 30 NZ_AP019802 Thermus thermophilus strain HC11 plasmid pHC11, complete sequence 218686-218715 7 0.767
NZ_LT605205_3 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547280-1547309 30 NC_017588 Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence 206775-206804 7 0.767
NZ_LT605205_3 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547280-1547309 30 NZ_AP019795 Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence 141593-141622 7 0.767
NZ_LT605205_3 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547280-1547309 30 NZ_LR027520 Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence 204309-204338 7 0.767
NZ_LT605205_3 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547280-1547309 30 NZ_AP019793 Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence 171007-171036 7 0.767
NZ_LT605205_3 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547664-1547693 30 NC_015147 Pseudarthrobacter phenanthrenivorans Sphe3 plasmid pASPHE302, complete sequence 18259-18288 7 0.767
NZ_LT605205_3 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547664-1547693 30 CP041260 Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence 58740-58769 7 0.767
NZ_LT605205_3 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547664-1547693 30 NC_049390 Escherichia virus P2_4A7b genome assembly, chromosome: 1 14232-14261 7 0.767
NZ_LT605205_3 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547664-1547693 30 AY251033 Bacteriophage L-413C, complete genome 13362-13391 7 0.767
NZ_LT605205_3 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547664-1547693 30 NC_004745 Yersinia phage L-413C, complete genome 13362-13391 7 0.767
NZ_LT605205_6 6.77|2227189|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2227189-2227222 34 MN693533 Marine virus AFVG_25M450, complete genome 12342-12375 7 0.794
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NC_017762 Helicobacter cinaedi PAGU611 plasmid pHci1, complete sequence 22187-22216 8 0.733
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 MG198570 Lake Baikal phage Baikal-20-5m-C28, complete genome 146112-146141 8 0.733
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 KM983333 Clostridium phage phiCTC2A, complete genome 35009-35038 8 0.733
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 KM983330 Clostridium phage phiCT19406A, complete genome 35009-35038 8 0.733
NZ_LT605205_3 3.3|1545127|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545127-1545156 30 NZ_CP043762 Paenibacillus sp. 37 plasmid pART37, complete sequence 396719-396748 8 0.733
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 NC_004671 Enterococcus faecalis V583 plasmid pTEF2, complete sequence 28306-28335 8 0.733
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 NZ_CP030046 Enterococcus faecalis strain C54 plasmid pC54, complete sequence 22404-22433 8 0.733
NZ_LT605205_3 3.15|1546048|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546048-1546077 30 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 183105-183134 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 JX194238 Pseudomonas phage PA26, complete genome 6507-6536 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 HG962375 Pseudomonas phage vB_PaeP_C2-10_Ab09, complete genome 6510-6539 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 MN906996 Pseudomonas phage LY218, complete genome 6514-6543 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 KR052142 Pseudomonas phage vB_PaeP_MAG4, complete genome 6567-6596 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 MF490236 Pseudomonas phage vB_PaeP_PYO2, complete genome 6534-6563 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 KM411958 Pseudomonas phage RWG, complete genome 6488-6517 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 KX171210 Pseudomonas phage vB_Pae1396P-5, complete genome 6461-6490 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 NC_013692 Pseudomonas phage LIT1, complete genome 6509-6538 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 KM974184 Pseudomonas phage YH6, complete genome 8030-8059 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 FN422399 Pseudomonas phage LIT1 complete genome 6509-6538 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 NC_031063 Pseudomonas phage PEV2, complete genome 6534-6563 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 KX171209 Pseudomonas phage vB_Pae575P-3, complete genome 6461-6490 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 MF490238 Pseudomonas phage vB_PaeP_DEV, complete genome 6534-6563 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 KP994390 Pseudomonas phage YH30, complete genome 70942-70971 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 MH356729 Pseudomonas phage LP14, complete genome 66544-66573 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 KM389219 UNVERIFIED: Pseudomonas phage PEV32 clone contig00001 genomic sequence 26761-26790 8 0.733
NZ_LT605205_3 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546279-1546308 30 KR054032 Pseudomonas phage DL64, complete genome 63422-63451 8 0.733
NZ_LT605205_3 3.21|1546510|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546510-1546539 30 NZ_LR723674 Rhizobium flavum strain YW14 plasmid 5 16908-16937 8 0.733
NZ_LT605205_3 3.29|1547049|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547049-1547078 30 NC_007762 Rhizobium etli CFN 42 plasmid p42a, complete sequence 99720-99749 8 0.733
NZ_LT605205_3 3.34|1547434|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547434-1547463 30 MN694696 Marine virus AFVG_250M540, complete genome 51501-51530 8 0.733
NZ_LT605205_3 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547587-1547616 30 MW145139 Providencia phage Kokobel1, complete genome 40222-40251 8 0.733
NZ_LT605205_6 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2223648-2223681 34 NZ_CP043475 Mycobacterium grossiae strain DSM 104744 plasmid pGP01, complete sequence 17706-17739 8 0.765
NZ_LT605205_6 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2223648-2223681 34 NZ_CP043475 Mycobacterium grossiae strain DSM 104744 plasmid pGP01, complete sequence 38140-38173 8 0.765
NZ_LT605205_6 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2223648-2223681 34 NC_009341 Mycolicibacterium gilvum PYR-GCK plasmid pMFLV03, complete sequence 9928-9961 8 0.765
NZ_LT605205_6 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2223648-2223681 34 NC_009340 Mycolicibacterium gilvum PYR-GCK plasmid pMFLV02, complete sequence 6973-7006 8 0.765
NZ_LT605205_6 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2223648-2223681 34 NC_014812 Mycolicibacterium gilvum Spyr1 plasmid pMSPYR102, complete sequence 6699-6732 8 0.765
NZ_LT605205_6 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226802-2226835 34 NZ_CP031066 Bacillus sp. SH8-8 plasmid pl193, complete sequence 93073-93106 8 0.765
NZ_LT605205_6 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226802-2226835 34 NZ_CP031063 Bacillus sp. AR4-2 plasmid pl192, complete sequence 93073-93106 8 0.765
NZ_LT605205_6 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226994-2227027 34 NZ_CP031100 Clostridium botulinum strain CFSAN034202 plasmid p1_CFSAN034202, complete sequence 36436-36469 8 0.765
NZ_LT605205_6 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226994-2227027 34 NZ_CP014147 Clostridium botulinum strain CDC_67190 plasmid pNPD12_2, complete sequence 58398-58431 8 0.765
NZ_LT605205_6 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226994-2227027 34 NZ_CP014218 Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence 53688-53721 8 0.765
NZ_LT605205_6 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226994-2227027 34 NZ_CP014173 Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence 53857-53890 8 0.765
NZ_LT605205_6 6.77|2227189|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2227189-2227222 34 MN693481 Marine virus AFVG_25M451, complete genome 20999-21032 8 0.765
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 NC_011738 Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence 215632-215661 9 0.7
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 MK773491 Salmonella phage 7t3, complete genome 95331-95360 9 0.7
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 MK268344 Salmonella phage Munch, complete genome 32643-32672 9 0.7
NZ_LT605205_3 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1545664-1545693 30 MT001829 Salmonella phage SE_PL, complete genome 253405-253434 9 0.7
NZ_LT605205_3 3.24|1546741|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546741-1546770 30 NZ_CP044456 Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence 143391-143420 9 0.7
NZ_LT605205_3 3.24|1546741|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1546741-1546770 30 NZ_CP039144 Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence 361065-361094 9 0.7
NZ_LT605205_3 3.34|1547434|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547434-1547463 30 MN334766 Serratia phage PCH45, complete genome 90695-90724 9 0.7
NZ_LT605205_3 3.34|1547434|30|NZ_LT605205|CRISPRCasFinder,PILER-CR 1547434-1547463 30 NZ_CP007449 Yersinia enterocolitica LC20 plasmid plasmid1_80K, complete sequence 69967-69996 9 0.7
NZ_LT605205_6 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226994-2227027 34 AP014361 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C80, *** SEQUENCING IN PROGRESS *** 2276-2309 9 0.735
NZ_LT605205_6 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226994-2227027 34 MN693308 Marine virus AFVG_25M475, complete genome 13811-13844 9 0.735
NZ_LT605205_6 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226994-2227027 34 MN693437 Marine virus AFVG_25M476, complete genome 13803-13836 9 0.735
NZ_LT605205_6 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226994-2227027 34 NC_021794 Cellulophaga phage phi18:3, complete genome 22434-22467 9 0.735
NZ_LT605205_6 6.94|2228295|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2228295-2228329 35 NZ_CP045047 Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827S, complete sequence 4111-4145 9 0.743
NZ_LT605205_6 6.94|2228295|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2228295-2228329 35 MT774376 CrAssphage cr55_1, complete genome 52624-52658 9 0.743
NZ_LT605205_6 6.94|2228295|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2228295-2228329 35 MT774375 CrAssphage cr50_1, complete genome 59024-59058 9 0.743
NZ_LT605205_3 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder 1544973-1545002 30 NZ_LR215005 Mycoplasma conjunctivae strain NCTC10147 plasmid 9 81305-81334 10 0.667
NZ_LT605205_6 6.11|2222944|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2222944-2222977 34 LR214958 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 4 682-715 10 0.706
NZ_LT605205_6 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2223648-2223681 34 NC_014840 Pantoea sp. At-9b plasmid pPAT9B03, complete sequence 144980-145013 10 0.706
NZ_LT605205_6 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2223648-2223681 34 NZ_CP054841 Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence 557666-557699 10 0.706
NZ_LT605205_6 6.57|2225905|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2225905-2225938 34 NZ_CP022999 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence 1438911-1438944 10 0.706
NZ_LT605205_6 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226994-2227027 34 NC_018878 Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence 268593-268626 10 0.706
NZ_LT605205_6 6.94|2228295|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2228295-2228329 35 KC801932 Escherichia phage Lw1, complete genome 93143-93177 10 0.714
NZ_LT605205_6 6.113|2229518|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2229518-2229552 35 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 685292-685326 10 0.714
NZ_LT605205_6 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226802-2226835 34 NZ_CP009059 Borreliella afzelii K78 plasmid lp54, complete sequence 28994-29027 11 0.676
NZ_LT605205_6 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226802-2226835 34 NZ_CP009214 Borreliella afzelii Tom3107 plasmid lp54, complete sequence 29265-29298 11 0.676
NZ_LT605205_6 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT 2226802-2226835 34 NC_017241 Borreliella afzelii PKo plasmid lp54, complete sequence 28851-28884 11 0.676

1. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 4, identity: 0.867

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttga	Protospacer
*   ************.*************

2. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NC_028671 (Enterococcus phage vB_EfaS_IME197, complete genome) position: , mismatch: 5, identity: 0.833

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
aaaaatattaattttaaagttagtaacagc	Protospacer
****************** ** **** *. 

3. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to AP013738 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S40-C68, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.833

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
aaaaatattaattttatacttttgttaaaa	Protospacer
**************** *****    ****

4. spacer 3.21|1546510|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MG209611 (Aphanizomenon phage vB_AphaS-CL131, complete genome) position: , mismatch: 5, identity: 0.833

agcacatagcggaaattgcatcggcaatta	CRISPR spacer
aacaattagcggaaattgcagcggctatta	Protospacer
*.**  ************** **** ****

5. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

6. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

7. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

8. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

9. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

10. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

11. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

12. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

13. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

14. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

15. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

16. spacer 3.31|1547203|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 5, identity: 0.833

agataagcagttttcgttagccattgttga	CRISPR spacer
atcgaagcagttttcgctagccattgttaa	Protospacer
*   ************.***********.*

17. spacer 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP054832 (Staphylococcus saprophyticus strain UTI-045 plasmid pUTI-045-1, complete sequence) position: , mismatch: 5, identity: 0.833

ggctgtg-tttaatacgtttaatcgttcttc	CRISPR spacer
-tctttgttttaatacgtttaattgtttttc	Protospacer
  ** ** ***************.***.***

18. spacer 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP053076 (Staphylococcus aureus strain SA01 plasmid pSA01-tet, complete sequence) position: , mismatch: 5, identity: 0.833

ggctgtg-tttaatacgtttaatcgttcttc	CRISPR spacer
-cctttgttttaatacgtttaattgtttttc	Protospacer
  ** ** ***************.***.***

19. spacer 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP017461 (Staphylococcus nepalensis strain JS1 plasmid pSNJS101, complete sequence) position: , mismatch: 5, identity: 0.833

ggctgtg-tttaatacgtttaatcgttcttc	CRISPR spacer
-tctttgttttaatacgtttaattgtttttc	Protospacer
  ** ** ***************.***.***

20. spacer 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP054008 (Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3) position: , mismatch: 5, identity: 0.833

ggctgtg-tttaatacgtttaatcgttcttc	CRISPR spacer
-tctttgttttaatacgtttaattgtttttc	Protospacer
  ** ** ***************.***.***

21. spacer 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP054008 (Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3) position: , mismatch: 5, identity: 0.833

ggctgtg-tttaatacgtttaatcgttcttc	CRISPR spacer
-tctttgttttaatacgtttaattgtttttc	Protospacer
  ** ** ***************.***.***

22. spacer 6.47|2225260|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NC_019521 (Sphingomonas phage PAU, complete genome) position: , mismatch: 5, identity: 0.853

ttcagaatgtggaatatgatattcgg-gtaacaag	CRISPR spacer
ttcagtatgtggattatgatattcggagtagcta-	Protospacer
***** ******* ************ ***.* * 

23. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 6, identity: 0.8

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
aaaaatattaattttatactttttaattgt	Protospacer
**************** ***** ***  . 

24. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 6, identity: 0.8

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
cccattatttattttaaattttgtaaaaaa	Protospacer
   * **** ********.***********

25. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NC_020292 (Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence) position: , mismatch: 6, identity: 0.8

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
agtaatattaattttaaactttgaaaaggc	Protospacer
*. ******************** ***.. 

26. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NC_014634 (Ilyobacter polytropus DSM 2926 plasmid pILYOP02, complete sequence) position: , mismatch: 6, identity: 0.8

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
atgaaacttaattttaaattttataaaaaa	Protospacer
* .**  ***********.***.*******

27. spacer 3.9|1545588|29|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP017574 (Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence) position: , mismatch: 6, identity: 0.793

accttgtagtgttttatcaa-aaattacta	CRISPR spacer
acattgtagtgttttatcaataagccatt-	Protospacer
** ***************** **...*.* 

28. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 6, identity: 0.8

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
agaaattagaaaacaaagattgaaagttaa	Protospacer
** .***.*****************   **

29. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 6, identity: 0.8

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
agaaattagaaaacaaagattgaaagttaa	Protospacer
** .***.*****************   **

30. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP028887 (Borrelia turcica IST7 plasmid lp32-B, complete sequence) position: , mismatch: 6, identity: 0.8

-agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
tcttgaattaaaaa-aaagattgaaacaaaa	Protospacer
   *** * .**** ****************

31. spacer 3.39|1547817|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

ttattatgacaccgttgctggtatgcaggt	CRISPR spacer
catttatgactccgttgctgctatgcagga	Protospacer
.  ******* ********* ******** 

32. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
aaaaatattgattttaaacttattattatg	Protospacer
*********.***********  **  * .

33. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
aaaaatattgattttaaacttattattatg	Protospacer
*********.***********  **  * .

34. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to LR214964 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 10) position: , mismatch: 7, identity: 0.767

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
tatttttttacttttaaactttttaaaaaa	Protospacer
 *   * *** *********** *******

35. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
aataatattaattttaagctttgcatattt	Protospacer
** **************.*****.* *   

36. spacer 3.3|1545127|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP042620 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence) position: , mismatch: 7, identity: 0.767

aacaacaatcaaaatgaagacgacgaagaa	CRISPR spacer
aacaacaaactaaatgaagacgaatcacga	Protospacer
******** * ************   * .*

37. spacer 3.3|1545127|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KY984068 (Erwinia phage vB_EamM_Y3, complete genome) position: , mismatch: 7, identity: 0.767

aacaacaatcaaaatgaagacgacgaagaa	CRISPR spacer
ttcggcgatcaacaagaagacgacgaagaa	Protospacer
  *..*.***** * ***************

38. spacer 3.9|1545588|29|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP032413 (Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence) position: , mismatch: 7, identity: 0.759

accttgtagtgttttatcaaaaattacta	CRISPR spacer
acattgtagtgttttaacaaaaaaattga	Protospacer
** ************* ******   . *

39. spacer 3.9|1545588|29|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP019641 (Planococcus sp. Y42 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

accttgtagtgttttatcaaaaattacta	CRISPR spacer
gattattagtgatttatctaaaattacta	Protospacer
. .*  ***** ****** **********

40. spacer 3.9|1545588|29|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP020864 (Paenibacillus sp. Cedars plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

accttgtagtgttttatcaaaaattacta	CRISPR spacer
acattgtagtgttttaacaaaaaaattga	Protospacer
** ************* ******   . *

41. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KX119204 (Helicobacter phage Sw577G, complete genome) position: , mismatch: 7, identity: 0.767

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
taagaaaggaaaaaaaagaatgaaacaaaa	Protospacer
 . **  ****** ***** **********

42. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to AP013587 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S30-C206, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
tgcaactggaaaacaaaaattaaaacaaag	Protospacer
 *..*.***********.***.*******.

43. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to AP013590 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S35-C247, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
tgcaactggaaaacaaaaattaaaacaaag	Protospacer
 *..*.***********.***.*******.

44. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to AP013585 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S26-C235, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
tgcaactggaaaacaaaaattaaaacaaag	Protospacer
 *..*.***********.***.*******.

45. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 7, identity: 0.767

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
tcagattggaaaacaaatcttgaaactaca	Protospacer
   **************  ******* * *

46. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to AP013582 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S24-C232, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
tgcaactggaaaacaaaaattaaaacaaag	Protospacer
 *..*.***********.***.*******.

47. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to AP013592 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S41-C163, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
tgcaactggaaaacaaaaattaaaacaaag	Protospacer
 *..*.***********.***.*******.

48. spacer 3.14|1545971|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MT811961 (Vibrio phage vB_pir03, complete genome) position: , mismatch: 7, identity: 0.767

cgaaagccgcattatgaaatacaatatcta	CRISPR spacer
ctaaagccgcattgtgaaatacgatctagc	Protospacer
* ***********.********.** *   

49. spacer 3.19|1546356|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MK295204 (Shigella phage vB_SdyM_006, complete genome) position: , mismatch: 7, identity: 0.767

gttatggatcattggcgtttatcgtcggca	CRISPR spacer
tttatggagtattggcgtttatcgtgtgac	Protospacer
 ******* .***************  *  

50. spacer 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 7, identity: 0.767

cgacctgaaggccatctcccaactccaagc	CRISPR spacer
gggggtgaaggccatctggcaactccaaga	Protospacer
 *.  ************  ********** 

51. spacer 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 7, identity: 0.767

cgacctgaaggccatctcccaactccaagc	CRISPR spacer
gggggtgaaggccatctggcaactccaaga	Protospacer
 *.  ************  ********** 

52. spacer 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP014142 (Thermus parvatiensis strain RL plasmid pTP143, complete sequence) position: , mismatch: 7, identity: 0.767

cgacctgaaggccatctcccaactccaagc	CRISPR spacer
gggggtgaaggccatctggcaactccaaga	Protospacer
 *.  ************  ********** 

53. spacer 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 7, identity: 0.767

cgacctgaaggccatctcccaactccaagc	CRISPR spacer
gggggtgaaggccatctggcaactccaaga	Protospacer
 *.  ************  ********** 

54. spacer 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 7, identity: 0.767

cgacctgaaggccatctcccaactccaagc	CRISPR spacer
gggggtgaaggccatctggcaactccaaga	Protospacer
 *.  ************  ********** 

55. spacer 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NC_017588 (Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence) position: , mismatch: 7, identity: 0.767

cgacctgaaggccatctcccaactccaagc	CRISPR spacer
gggggtgaaggccatctggcaactccaaga	Protospacer
 *.  ************  ********** 

56. spacer 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_AP019795 (Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence) position: , mismatch: 7, identity: 0.767

cgacctgaaggccatctcccaactccaagc	CRISPR spacer
gggggtgaaggccatctggcaactccaaga	Protospacer
 *.  ************  ********** 

57. spacer 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.767

cgacctgaaggccatctcccaactccaagc	CRISPR spacer
gggggtgaaggccatctggcaactccaaga	Protospacer
 *.  ************  ********** 

58. spacer 3.32|1547280|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_AP019793 (Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence) position: , mismatch: 7, identity: 0.767

cgacctgaaggccatctcccaactccaagc	CRISPR spacer
gggggtgaaggccatctggcaactccaaga	Protospacer
 *.  ************  ********** 

59. spacer 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NC_015147 (Pseudarthrobacter phenanthrenivorans Sphe3 plasmid pASPHE302, complete sequence) position: , mismatch: 7, identity: 0.767

tgcttccggccattcgccccagtcacccta	CRISPR spacer
cgctttcggccattcgccccagtagtcgca	Protospacer
.****.***************** ..* .*

60. spacer 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to CP041260 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence) position: , mismatch: 7, identity: 0.767

tgcttccggccattcgccccagtcacccta	CRISPR spacer
tgcgtccggccattccccccagtggctttg	Protospacer
*** *********** ******* .*..*.

61. spacer 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NC_049390 (Escherichia virus P2_4A7b genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.767

tgcttccggccattcgccccagtcacccta	CRISPR spacer
tacttccgcccattccccccagtcagtttc	Protospacer
*.****** ****** ********* ..* 

62. spacer 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to AY251033 (Bacteriophage L-413C, complete genome) position: , mismatch: 7, identity: 0.767

tgcttccggccattcgccccagtcacccta	CRISPR spacer
aacttccgcccattccccccagtcagcttc	Protospacer
 .****** ****** ********* *.* 

63. spacer 3.37|1547664|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NC_004745 (Yersinia phage L-413C, complete genome) position: , mismatch: 7, identity: 0.767

tgcttccggccattcgccccagtcacccta	CRISPR spacer
aacttccgcccattccccccagtcagcttc	Protospacer
 .****** ****** ********* *.* 

64. spacer 6.77|2227189|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to MN693533 (Marine virus AFVG_25M450, complete genome) position: , mismatch: 7, identity: 0.794

ttaaaaaagacagaaatatacaagcagttgacgc	CRISPR spacer
taaaaaaaggcagatatatacaagcacctgcagc	Protospacer
* *******.**** *********** .**  **

65. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NC_017762 (Helicobacter cinaedi PAGU611 plasmid pHci1, complete sequence) position: , mismatch: 8, identity: 0.733

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
gaaaaaattaattttaaactttttttattt	Protospacer
.**** **************** *  *   

66. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 8, identity: 0.733

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
ccatgaattacttttaaactttgtaaatga	Protospacer
  * . **** **************** .*

67. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KM983333 (Clostridium phage phiCTC2A, complete genome) position: , mismatch: 8, identity: 0.733

aaaaatat-----taattttaaactttgtaaaaaa	CRISPR spacer
-----tttttctctaattttaaactttgtataaat	Protospacer
     * *     ***************** *** 

68. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KM983330 (Clostridium phage phiCT19406A, complete genome) position: , mismatch: 8, identity: 0.733

aaaaatat-----taattttaaactttgtaaaaaa	CRISPR spacer
-----tttttctctaattttaaactttgtataaat	Protospacer
     * *     ***************** *** 

69. spacer 3.3|1545127|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 8, identity: 0.733

aacaacaatcaaaatgaagacgacgaagaa	CRISPR spacer
actttgaatcaaaaggaagacgatgaagag	Protospacer
* .   ******** ********.*****.

70. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NC_004671 (Enterococcus faecalis V583 plasmid pTEF2, complete sequence) position: , mismatch: 8, identity: 0.733

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
attttaaagaaaacaaagaatgaaacaaag	Protospacer
* *    .*********** *********.

71. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP030046 (Enterococcus faecalis strain C54 plasmid pC54, complete sequence) position: , mismatch: 8, identity: 0.733

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
attttaaagaaaacaaagaatgaaacaaag	Protospacer
* *    .*********** *********.

72. spacer 3.15|1546048|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gattaagtctacgtaatttctcttcaagag	CRISPR spacer
tttcgtttatacgtaatttctattcaagag	Protospacer
  *..  * ************ ********

73. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to JX194238 (Pseudomonas phage PA26, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

74. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to HG962375 (Pseudomonas phage vB_PaeP_C2-10_Ab09, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

75. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MN906996 (Pseudomonas phage LY218, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

76. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KR052142 (Pseudomonas phage vB_PaeP_MAG4, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

77. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MF490236 (Pseudomonas phage vB_PaeP_PYO2, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

78. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KM411958 (Pseudomonas phage RWG, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

79. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KX171210 (Pseudomonas phage vB_Pae1396P-5, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

80. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NC_013692 (Pseudomonas phage LIT1, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

81. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KM974184 (Pseudomonas phage YH6, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

82. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to FN422399 (Pseudomonas phage LIT1 complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

83. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NC_031063 (Pseudomonas phage PEV2, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

84. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KX171209 (Pseudomonas phage vB_Pae575P-3, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

85. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MF490238 (Pseudomonas phage vB_PaeP_DEV, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

86. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KP994390 (Pseudomonas phage YH30, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

87. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MH356729 (Pseudomonas phage LP14, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

88. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KM389219 (UNVERIFIED: Pseudomonas phage PEV32 clone contig00001 genomic sequence) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

89. spacer 3.18|1546279|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to KR054032 (Pseudomonas phage DL64, complete genome) position: , mismatch: 8, identity: 0.733

ttcttcaaccctgttgagttgtgcctggag	CRISPR spacer
aagatgaacgctgttgagttgtgcctgaac	Protospacer
    * *** *****************.* 

90. spacer 3.21|1546510|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_LR723674 (Rhizobium flavum strain YW14 plasmid 5) position: , mismatch: 8, identity: 0.733

agcacatagcggaaattgcatcggcaatta	CRISPR spacer
ccgacatagcggaaattccatcggcgagag	Protospacer
   ************** *******.*  .

91. spacer 3.29|1547049|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NC_007762 (Rhizobium etli CFN 42 plasmid p42a, complete sequence) position: , mismatch: 8, identity: 0.733

tccctttagctatgtttgatttttcattat	CRISPR spacer
tttaaatagctgtgtttgattttttattac	Protospacer
*..   *****.************.****.

92. spacer 3.34|1547434|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to MN694696 (Marine virus AFVG_250M540, complete genome) position: , mismatch: 8, identity: 0.733

aggagcgttatctggaaatgcagacacagc	CRISPR spacer
tttagatatatctggaaatgcagacataga	Protospacer
   **   ******************.** 

93. spacer 3.36|1547587|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to MW145139 (Providencia phage Kokobel1, complete genome) position: , mismatch: 8, identity: 0.733

ggctgtgtttaatacgtttaatcgttcttc	CRISPR spacer
catcatgtttaatacgtttaatcggtgtta	Protospacer
 ....******************* * ** 

94. spacer 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043475 (Mycobacterium grossiae strain DSM 104744 plasmid pGP01, complete sequence) position: , mismatch: 8, identity: 0.765

tccgagctgtcgttgatcgccttcggtctgaaga	CRISPR spacer
cccgagctgtcggtgatcgccatcggtagcacgg	Protospacer
.*********** ******** *****   * *.

95. spacer 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043475 (Mycobacterium grossiae strain DSM 104744 plasmid pGP01, complete sequence) position: , mismatch: 8, identity: 0.765

tccgagctgtcgttgatcgccttcggtctgaaga	CRISPR spacer
cccgagctgtcggtgatcgccatcggtagcacgg	Protospacer
.*********** ******** *****   * *.

96. spacer 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NC_009341 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV03, complete sequence) position: , mismatch: 8, identity: 0.765

tccgagctgtcgttgatcgccttcggtctgaaga	CRISPR spacer
cccgagctgtcggtgatcgccatcggtagcacgg	Protospacer
.*********** ******** *****   * *.

97. spacer 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NC_009340 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV02, complete sequence) position: , mismatch: 8, identity: 0.765

tccgagctgtcgttgatcgccttcggtctgaaga	CRISPR spacer
cccgagctgtcggtgatcgccatcggtagcacgg	Protospacer
.*********** ******** *****   * *.

98. spacer 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NC_014812 (Mycolicibacterium gilvum Spyr1 plasmid pMSPYR102, complete sequence) position: , mismatch: 8, identity: 0.765

tccgagctgtcgttgatcgccttcggtctgaaga	CRISPR spacer
cccgagctgtcggtgatcgccatcggtagcacgg	Protospacer
.*********** ******** *****   * *.

99. spacer 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031066 (Bacillus sp. SH8-8 plasmid pl193, complete sequence) position: , mismatch: 8, identity: 0.765

tccataatcatagtttttaaaaattagcatctgt	CRISPR spacer
tcttttttcaaagtttttaaaaaatagcatcttc	Protospacer
**. *  *** ************ ******** .

100. spacer 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031063 (Bacillus sp. AR4-2 plasmid pl192, complete sequence) position: , mismatch: 8, identity: 0.765

tccataatcatagtttttaaaaattagcatctgt	CRISPR spacer
tcttttttcaaagtttttaaaaaatagcatcttc	Protospacer
**. *  *** ************ ******** .

101. spacer 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031100 (Clostridium botulinum strain CFSAN034202 plasmid p1_CFSAN034202, complete sequence) position: , mismatch: 8, identity: 0.765

cttaaaaa-----atagaattatgaaaacaaaagaatta	CRISPR spacer
-----aaatgactatagaattattaaaataaaagaattt	Protospacer
     ***     ********** ****.********* 

102. spacer 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014147 (Clostridium botulinum strain CDC_67190 plasmid pNPD12_2, complete sequence) position: , mismatch: 8, identity: 0.765

cttaaaaa-----atagaattatgaaaacaaaagaatta	CRISPR spacer
-----aaatgactatagaattattaaaataaaagaattt	Protospacer
     ***     ********** ****.********* 

103. spacer 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014218 (Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence) position: , mismatch: 8, identity: 0.765

cttaaaaa-----atagaattatgaaaacaaaagaatta	CRISPR spacer
-----aaatgactatagaattattaaaataaaagaattt	Protospacer
     ***     ********** ****.********* 

104. spacer 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014173 (Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence) position: , mismatch: 8, identity: 0.765

cttaaaaa-----atagaattatgaaaacaaaagaatta	CRISPR spacer
-----aaatgactatagaattattaaaataaaagaattt	Protospacer
     ***     ********** ****.********* 

105. spacer 6.77|2227189|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to MN693481 (Marine virus AFVG_25M451, complete genome) position: , mismatch: 8, identity: 0.765

ttaaaaaagacagaaatatacaagcagttgacgc	CRISPR spacer
aaaaaaaaggcagatatatacaagcacctgcagc	Protospacer
  *******.**** *********** .**  **

106. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 9, identity: 0.7

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
tatccttggaaaacaaaaattgaaactctt	Protospacer
 .*  ************.********    

107. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MK773491 (Salmonella phage 7t3, complete genome) position: , mismatch: 9, identity: 0.7

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
gatgattggaaaacaaaacttgaaaagcgt	Protospacer
..***************. ****** . . 

108. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.7

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
gatgattggaaaacaaaacttgaaaagcgt	Protospacer
..***************. ****** . . 

109. spacer 3.10|1545664|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to MT001829 (Salmonella phage SE_PL, complete genome) position: , mismatch: 9, identity: 0.7

agtgattggaaaacaaagattgaaacaaaa	CRISPR spacer
gatgattggaaaacaaaacttgaaaagcgt	Protospacer
..***************. ****** . . 

110. spacer 3.24|1546741|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP044456 (Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence) position: , mismatch: 9, identity: 0.7

ataattgtggttgtggcattgtctgctttg	CRISPR spacer
cttcttgtggttgtggcattggctgtggaa	Protospacer
 *  ***************** ***.   .

111. spacer 3.24|1546741|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 9, identity: 0.7

ataattgtggttgtggcattgtctgctttg	CRISPR spacer
cttcttgtggttgtggcattggctgtggaa	Protospacer
 *  ***************** ***.   .

112. spacer 3.34|1547434|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to MN334766 (Serratia phage PCH45, complete genome) position: , mismatch: 9, identity: 0.7

aggagcgttatctggaaatgcagacacagc	CRISPR spacer
cccagagttatctggaaatgcagattgggg	Protospacer
   ** ******************.  .* 

113. spacer 3.34|1547434|30|NZ_LT605205|CRISPRCasFinder,PILER-CR matches to NZ_CP007449 (Yersinia enterocolitica LC20 plasmid plasmid1_80K, complete sequence) position: , mismatch: 9, identity: 0.7

aggagcgttatctggaaatgcagacacagc	CRISPR spacer
gacagcgttatcgggaaattcagacatgat	Protospacer
.. ********* ****** ******....

114. spacer 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to AP014361 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C80, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

cttaaaaaatagaattatgaaaacaaaagaatta	CRISPR spacer
acttaaaagtataattatgaaaacaaaatacatt	Protospacer
 .* ****.** **************** *  * 

115. spacer 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to MN693308 (Marine virus AFVG_25M475, complete genome) position: , mismatch: 9, identity: 0.735

cttaaaaaatagaattatgaaaacaaaagaatta--	CRISPR spacer
tacaaaaaatagaattaacaaaacaaa--gatcaat	Protospacer
. .**************  ********  .**.*  

116. spacer 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to MN693437 (Marine virus AFVG_25M476, complete genome) position: , mismatch: 9, identity: 0.735

cttaaaaaatagaattatgaaaacaaaagaatta--	CRISPR spacer
tacaaaaaatagaattaacaaaacaaa--gatcaat	Protospacer
. .**************  ********  .**.*  

117. spacer 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NC_021794 (Cellulophaga phage phi18:3, complete genome) position: , mismatch: 9, identity: 0.735

cttaaaaaatagaattatgaaaacaaaagaatta	CRISPR spacer
attaaaaaatataattatggaaacacttacatca	Protospacer
 ********** *******.*****   . **.*

118. spacer 6.94|2228295|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045047 (Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827S, complete sequence) position: , mismatch: 9, identity: 0.743

atttttgtttctaattctttctctaaaatcataat	CRISPR spacer
aaagctgtttctaattcgttctctaaattctgtat	Protospacer
*   .************ ********* **   **

119. spacer 6.94|2228295|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 9, identity: 0.743

atttttgtttctaattctttctctaaaatcataat	CRISPR spacer
ttctcaagttctatttctttctctaaaatcttatt	Protospacer
 *.*. . ***** **************** ** *

120. spacer 6.94|2228295|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to MT774375 (CrAssphage cr50_1, complete genome) position: , mismatch: 9, identity: 0.743

atttttgtttctaattctttctctaaaatcataat	CRISPR spacer
ttctcaagttctatttctttctctaaaatcttatt	Protospacer
 *.*. . ***** **************** ** *

121. spacer 3.1|1544973|30|NZ_LT605205|PILER-CR,CRISPRCasFinder matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 10, identity: 0.667

aaaaatattaattttaaactttgtaaaaaa	CRISPR spacer
ttcaatattaattttaaaatttgttgcctt	Protospacer
   *************** ***** .    

122. spacer 6.11|2222944|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to LR214958 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 4) position: , mismatch: 10, identity: 0.706

tttcgaatatacaatactattgatggttaaataa	CRISPR spacer
aaaagaatacacaatactattgatgcttatcgta	Protospacer
    *****.*************** ***    *

123. spacer 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NC_014840 (Pantoea sp. At-9b plasmid pPAT9B03, complete sequence) position: , mismatch: 10, identity: 0.706

tccgagctgtcgttgatcgccttcggtctgaaga	CRISPR spacer
gtgttgctgtcggtgttcgccttcggtctgcaat	Protospacer
 .   ******* ** ************** *. 

124. spacer 6.22|2223648|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

tccgagctgtcgttgatcgccttcggtctgaaga	CRISPR spacer
tccaagctgtcgttcatcgccttccccggcacca	Protospacer
***.********** *********  .   *  *

125. spacer 6.57|2225905|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 10, identity: 0.706

ttaagttcttcctgttttgccaattcgcctgatt	CRISPR spacer
ggacatggttccggttttgccatttcgcctgacg	Protospacer
  * .*  **** ********* *********. 

126. spacer 6.74|2226994|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 10, identity: 0.706

cttaaaaaatagaattatgaaaacaaaagaatta	CRISPR spacer
tcgaaaaaatagatttaagaaaacaaactacaaa	Protospacer
.. ********** *** *********  *   *

127. spacer 6.94|2228295|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to KC801932 (Escherichia phage Lw1, complete genome) position: , mismatch: 10, identity: 0.714

atttttgtttctaattctttctctaaaatcataat	CRISPR spacer
ttcagtatttctaattcttcatctaaaatcatttc	Protospacer
 *.  *.************. ***********  .

128. spacer 6.113|2229518|35|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 10, identity: 0.714

gcgaattactatacaggtgttcgccggtgcttttt	CRISPR spacer
cccagggtttaaacaggcgttcgccggtgcttttc	Protospacer
 * *.   .** *****.****************.

129. spacer 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009059 (Borreliella afzelii K78 plasmid lp54, complete sequence) position: , mismatch: 11, identity: 0.676

tccataatcatagtttttaaaaattagcatctgt	CRISPR spacer
aacataatcatagttttcataaattattactcta	Protospacer
  ***************.* ****** .*...  

130. spacer 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009214 (Borreliella afzelii Tom3107 plasmid lp54, complete sequence) position: , mismatch: 11, identity: 0.676

tccataatcatagtttttaaaaattagcatctgt	CRISPR spacer
aacataatcatagttttcataaattattactcta	Protospacer
  ***************.* ****** .*...  

131. spacer 6.71|2226802|34|NZ_LT605205|PILER-CR,CRISPRCasFinder,CRT matches to NC_017241 (Borreliella afzelii PKo plasmid lp54, complete sequence) position: , mismatch: 11, identity: 0.676

tccataatcatagtttttaaaaattagcatctgt	CRISPR spacer
aacataatcatagttttcataaattattactcta	Protospacer
  ***************.* ****** .*...  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 917841 : 974743 51 Tupanvirus(28.57%) tRNA,transposase,integrase attL 958722:958738|attR 967972:967988
DBSCAN-SWA_2 2375063 : 2435712 49 Bacillus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_3 3570077 : 3631181 53 Streptococcus_phage(20.0%) transposase,integrase attL 3566839:3566854|attR 3624221:3624236
DBSCAN-SWA_4 4034415 : 4061716 20 Norovirus(50.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage