CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT605059	Acinetobacter baumannii strain NCTC7364 chromosome 1	0 crisprs	DEDDh,csa3,cas3,WYL,PD-DExK	0	0	5	0
NZ_LT605060	Acinetobacter baumannii strain NCTC7364 plasmid 2, complete sequence	0 crisprs	csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

660357 : 668558

uncultured_Caudovirales_phage(71.43%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000213576.1\|660357_660792_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.8e-41	62.8
WP_000373081.1\|660847_661171_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	7.0e-22	61.0
WP_000670222.1\|661177_661651_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.1e-35	51.3
WP_000068659.1\|661658_662699_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_001052988.1\|662703_663408_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-92	72.5
WP_001191833.1\|663426_664380_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	7.8e-61	42.5
WP_000080830.1\|664485_665553_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	7.8e-94	59.2
WP_000835372.1\|665846_666665_+	hypothetical protein	NA	NA	NA	NA
WP_000770669.1\|667072_667345_+	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_079548087.1\|667334_668558_+	ImmA/IrrE family metallo-endopeptidase	A0A222YXG1	Escherichia_phage	4.1e-22	47.1

DBSCAN-SWA_2

912727 : 958418

Acinetobacter_phage(81.63%)

integrase,capsid,terminase

attL 943773:943788|attR 966712:966727

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001033994.1\|912727_913201_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.2e-23	42.3
WP_000401871.1\|913302_913503_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_079548154.1\|914251_914461_-	hypothetical protein	A0A0P0IRG7	Acinetobacter_phage	2.4e-31	94.2
WP_079548155.1\|914457_914853_-	DUF551 domain-containing protein	A0A0P0I8H3	Acinetobacter_phage	2.3e-30	70.4
WP_171059716.1\|914849_915506_-	hypothetical protein	A0A2H4JDC0	uncultured_Caudovirales_phage	1.7e-78	63.9
WP_000868481.1\|915603_915912_-	hypothetical protein	NA	NA	NA	NA
WP_079548156.1\|915911_916850_-	hypothetical protein	A0A2H4JAZ0	uncultured_Caudovirales_phage	3.5e-154	89.1
WP_079548157.1\|916859_917093_-	hypothetical protein	A0A068CDE4	Acinetobacter_phage	5.4e-08	46.5
WP_079548158.1\|917107_917473_-	hypothetical protein	NA	NA	NA	NA
WP_079548159.1\|917469_918264_-	hypothetical protein	A0A220NQL7	Acinetobacter_phage	1.2e-38	41.2
WP_079548160.1\|918275_918590_-	hypothetical protein	A0A1B1P9H2	Acinetobacter_phage	6.8e-46	96.2
WP_057048740.1\|918589_918781_-	hypothetical protein	A0A1B1P9G9	Acinetobacter_phage	4.4e-16	69.1
WP_079548161.1\|918976_919255_+	hypothetical protein	NA	NA	NA	NA
WP_079548162.1\|919232_919484_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_079548163.1\|919600_919930_-	hypothetical protein	A0A1B1P9G6	Acinetobacter_phage	6.9e-17	62.7
WP_079548164.1\|920056_920260_-	hypothetical protein	A0A1B1P9G7	Acinetobacter_phage	2.7e-27	95.5
WP_046023785.1\|920274_921057_-	helix-turn-helix domain-containing protein	J7I4M9	Acinetobacter_phage	6.6e-98	74.6
WP_001217698.1\|921184_921361_+	hypothetical protein	NA	NA	NA	NA
WP_000051087.1\|921357_921624_+	hypothetical protein	A0A1B1P9I3	Acinetobacter_phage	2.8e-32	78.4
WP_079548165.1\|921674_922457_+	HNH endonuclease	A0A125RNK0	Pseudomonas_phage	3.2e-60	49.8
WP_079548166.1\|922449_923358_+	hypothetical protein	A0A2I7RT63	Vibrio_phage	8.3e-36	51.7
WP_079548167.1\|923350_924190_+	hypothetical protein	NA	NA	NA	NA
WP_079548168.1\|924186_924396_+	hypothetical protein	NA	NA	NA	NA
WP_171265602.1\|924392_924563_+	hypothetical protein	NA	NA	NA	NA
WP_079548169.1\|924559_925048_+	hypothetical protein	A0A068CDI0	Acinetobacter_phage	2.1e-14	36.2
WP_002018656.1\|925097_925460_+	hypothetical protein	A0A0N7IRE2	Acinetobacter_phage	4.3e-68	98.3
WP_079548170.1\|925452_925650_+	hypothetical protein	NA	NA	NA	NA
WP_079548171.1\|925646_926120_+	hypothetical protein	NA	NA	NA	NA
WP_079548172.1\|926112_926439_+	hypothetical protein	E2GLW0	Acinetobacter_phage	5.3e-09	42.7
WP_079549137.1\|926598_927018_+	hypothetical protein	I2GUD3	Acinetobacter_phage	3.8e-28	88.7
WP_079548173.1\|927014_927470_+	hypothetical protein	A0A0P0HSP6	Acinetobacter_phage	1.6e-75	96.0
WP_000837877.1\|927466_927736_+	hypothetical protein	A0A0D4DC03	Acinetobacter_phage	5.4e-44	97.8
WP_031975125.1\|927746_928262_+	hypothetical protein	A0A0P0I4C3	Acinetobacter_phage	2.3e-19	37.7
WP_079548174.1\|928730_929153_+	hypothetical protein	NA	NA	NA	NA
WP_155765212.1\|929218_929356_+	hypothetical protein	NA	NA	NA	NA
WP_079548175.1\|929360_929564_+	hypothetical protein	A0A1B1P9J1	Acinetobacter_phage	4.1e-28	95.5
WP_079548176.1\|929514_929790_+	DUF968 domain-containing protein	A0A0D4DC07	Acinetobacter_phage	5.2e-42	87.9
WP_000907104.1\|929789_929975_+	hypothetical protein	NA	NA	NA	NA
WP_000433690.1\|930009_930492_+	hypothetical protein	A0A0D4DC11	Acinetobacter_phage	1.0e-64	73.1
WP_000818949.1\|930793_931303_+\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	3.7e-41	63.6
WP_079548178.1\|931262_932546_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	6.7e-249	98.6
WP_079548179.1\|932545_933952_+	DUF4055 domain-containing protein	A0A1B1P9C6	Acinetobacter_phage	2.1e-264	95.3
WP_079548180.1\|933968_935054_+\|capsid	minor capsid protein	A0A1B1P9B7	Acinetobacter_phage	3.8e-197	97.5
WP_153560487.1\|935050_935200_+	hypothetical protein	NA	NA	NA	NA
WP_079548181.1\|935344_936070_+	hypothetical protein	A0A1B1P9C7	Acinetobacter_phage	1.5e-75	92.1
WP_079548182.1\|936087_937104_+	hypothetical protein	A0A1B1P9D0	Acinetobacter_phage	1.5e-166	87.6
WP_000818586.1\|937115_937301_+	hypothetical protein	A0A1B1P9F4	Acinetobacter_phage	4.3e-24	86.7
WP_004989982.1\|937357_937744_+	hypothetical protein	A0A1B1P9F2	Acinetobacter_phage	2.5e-66	98.4
WP_079548183.1\|937747_938140_+	glutamate 5-kinase	A0A1B1P9E3	Acinetobacter_phage	1.8e-59	87.7
WP_016803036.1\|938139_938430_+	hypothetical protein	NA	NA	NA	NA
WP_079548184.1\|938395_938851_+	hypothetical protein	A0A1B1P9D5	Acinetobacter_phage	6.0e-51	70.2
WP_079548185.1\|938852_939248_+	hypothetical protein	A0A1B1P9D6	Acinetobacter_phage	4.7e-68	94.7
WP_001148039.1\|939325_940507_+	hypothetical protein	A0A173GCS4	Salmonella_phage	1.0e-49	34.6
WP_000094305.1\|940577_941498_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	9.2e-59	41.4
WP_001162953.1\|941545_942079_+	hypothetical protein	A0A0N7IRG3	Acinetobacter_phage	1.1e-40	55.1
WP_079548186.1\|942600_942984_+	hypothetical protein	NA	NA	NA	NA
WP_140947144.1\|942980_943493_+	hypothetical protein	NA	NA	NA	NA
WP_079548188.1\|943609_944131_+	DUF4468 domain-containing protein	A0A0P0I8L3	Acinetobacter_phage	1.8e-64	70.1
943773:943788	attL	NA	NA	NA	NA
WP_000106804.1\|944149_944425_+	hypothetical protein	NA	NA	NA	NA
WP_185948808.1\|944502_947946_+	tape measure protein	A0A0P0IRB4	Acinetobacter_phage	1.1e-109	49.0
WP_038349516.1\|948026_948452_+	hypothetical protein	NA	NA	NA	NA
WP_002051595.1\|948676_948850_+	hypothetical protein	NA	NA	NA	NA
WP_001094264.1\|948972_949449_+	hypothetical protein	NA	NA	NA	NA
WP_079548189.1\|949449_949956_+	DUF1833 family protein	NA	NA	NA	NA
WP_079548190.1\|950269_953116_+	hypothetical protein	A0A0D4DBG7	Acinetobacter_phage	3.7e-122	32.2
WP_079548191.1\|953174_954758_+	hypothetical protein	A0A1B1P9G3	Acinetobacter_phage	1.6e-180	66.1
WP_002123210.1\|954833_955223_+	hypothetical protein	J7I481	Acinetobacter_phage	4.3e-66	99.2
WP_079548192.1\|955265_955808_+	hypothetical protein	J7I0Y1	Acinetobacter_phage	1.7e-97	95.0
WP_079548193.1\|955934_956129_+	hypothetical protein	A0A1B1P9F8	Acinetobacter_phage	7.1e-30	98.4
WP_079548194.1\|956125_957340_-\|integrase	tyrosine-type recombinase/integrase	A0A0P0IRB7	Acinetobacter_phage	2.3e-121	55.4
WP_000047853.1\|957661_958153_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.7e-30	44.3
WP_079548195.1\|958154_958418_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	7.0e-20	56.8
966712:966727	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2384356 : 2394383

Acinetobacter_phage(42.86%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079548701.1\|2384356_2384902_-	N-acetylmuramidase	A0A0N7IRE7	Acinetobacter_phage	2.7e-98	96.7
WP_079548702.1\|2384944_2385334_-	hypothetical protein	A0A0P0IVR6	Acinetobacter_phage	5.2e-64	93.8
WP_079548703.1\|2385399_2387889_-	hypothetical protein	A0A1I9L2F3	Xanthomonas_phage	1.3e-06	23.5
WP_079548704.1\|2387889_2388321_-	C40 family peptidase	A0A0B5A615	Paracoccus_phage	1.6e-08	32.6
WP_079548705.1\|2388320_2389778_-	hypothetical protein	A0A1B1P9G3	Acinetobacter_phage	2.0e-116	58.3
WP_079548706.1\|2389826_2390684_-	DUF2163 domain-containing protein	A0A0U3DZV3	Pseudomonas_phage	1.1e-08	22.7
WP_079548707.1\|2390680_2391334_-	DUF2460 domain-containing protein	NA	NA	NA	NA
WP_079548708.1\|2391344_2394383_-\|tail	phage tail protein	D4FUM0	Pseudomonas_phage	9.5e-44	49.7

DBSCAN-SWA_4

2398673 : 2425229

Acinetobacter_phage(68.75%)

integrase,capsid,terminase

attL 2408892:2408907|attR 2429265:2429280

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002126831.1\|2398673_2399654_-	DUF2184 domain-containing protein	H9C0E5	Vibrio_phage	1.1e-06	22.2
WP_005128459.1\|2399657_2400128_-	hypothetical protein	M4T3R5	Psychrobacter_phage	4.8e-19	43.8
WP_079548713.1\|2400146_2401346_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	7.9e-26	34.8
WP_033502645.1\|2401423_2401909_-	DUF1643 domain-containing protein	A0A0U2UUT5	Pseudomonas_phage	1.2e-25	39.3
WP_005068140.1\|2401960_2402773_-\|capsid	minor capsid protein	M4T3R2	Psychrobacter_phage	1.3e-51	41.4
WP_057049796.1\|2402717_2404052_-	DUF1073 domain-containing protein	M4SN90	Psychrobacter_phage	8.9e-87	39.4
WP_079548714.1\|2404060_2405587_-\|terminase	phage terminase large subunit	A0A291LBL3	Klebsiella_phage	8.9e-91	41.4
WP_000729394.1\|2405564_2406041_-	DUF2280 domain-containing protein	A0A0P0HSK4	Acinetobacter_phage	4.5e-33	53.6
WP_079548715.1\|2406100_2406742_-	hypothetical protein	A0A0P0I8J9	Acinetobacter_phage	5.0e-112	87.3
WP_079548716.1\|2406710_2407178_-	hypothetical protein	A0A0P0IRI6	Acinetobacter_phage	7.2e-60	74.2
WP_079548717.1\|2407238_2407694_-	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	9.4e-81	96.0
WP_079548718.1\|2408320_2408665_-	hypothetical protein	NA	NA	NA	NA
2408892:2408907	attL	NA	NA	NA	NA
WP_079548719.1\|2408976_2409237_-	hypothetical protein	NA	NA	NA	NA
WP_001017700.1\|2409446_2409665_-	hypothetical protein	NA	NA	NA	NA
WP_000861102.1\|2410150_2410405_-	hypothetical protein	NA	NA	NA	NA
WP_001277128.1\|2410376_2410853_-	hypothetical protein	A0A2H4J548	uncultured_Caudovirales_phage	1.2e-25	40.3
WP_079548720.1\|2410849_2411251_-	DUF559 domain-containing protein	A0A0P0I8E8	Acinetobacter_phage	4.0e-67	96.9
WP_032066758.1\|2411250_2411574_-	hypothetical protein	NA	NA	NA	NA
WP_002053031.1\|2411566_2411770_-	hypothetical protein	NA	NA	NA	NA
WP_079548721.1\|2411762_2412104_-	hypothetical protein	A0A0P0I8A5	Acinetobacter_phage	5.7e-30	54.7
WP_004793747.1\|2412100_2412871_-	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	4.4e-147	100.0
WP_079548722.1\|2412867_2413797_-	hypothetical protein	A0A0D4DBT2	Acinetobacter_phage	3.3e-157	96.1
WP_002053116.1\|2413855_2414212_-	hypothetical protein	J7I4N3	Acinetobacter_phage	2.0e-57	100.0
WP_073820131.1\|2414208_2414505_-	hypothetical protein	J7HXM0	Acinetobacter_phage	3.6e-49	99.0
WP_001095598.1\|2414501_2414777_-	hypothetical protein	A0A0P0IVP2	Acinetobacter_phage	8.9e-42	100.0
WP_079548723.1\|2415093_2415279_-	hypothetical protein	J7HXD2	Acinetobacter_phage	5.1e-09	61.8
WP_079548724.1\|2415382_2416030_+	helix-turn-helix domain-containing protein	A0A0R6PJ00	Moraxella_phage	1.3e-27	34.0
WP_079548725.1\|2416056_2418192_+	ATP-binding protein	NA	NA	NA	NA
WP_077164677.1\|2418165_2419389_-	DNA cytosine methyltransferase	A0A191SB20	Nostoc_phage	1.5e-16	25.7
WP_057695131.1\|2419718_2420159_+	hypothetical protein	A0A0N7IRE9	Acinetobacter_phage	3.1e-73	95.9
WP_079548726.1\|2420161_2420485_+	hypothetical protein	A0A0D4DCB5	Acinetobacter_phage	7.4e-56	96.3
WP_079548727.1\|2420495_2421617_+	ATP-binding protein	A0A0D4DBX7	Acinetobacter_phage	2.2e-211	99.5
WP_079548728.1\|2421613_2422690_+	hypothetical protein	A0A0D4DBR8	Acinetobacter_phage	5.1e-141	75.1
WP_079548729.1\|2422691_2422937_+	hypothetical protein	A0A0P0IVN4	Acinetobacter_phage	9.6e-40	97.5
WP_000453808.1\|2422939_2423149_+	hypothetical protein	A0A0P0IVS1	Acinetobacter_phage	6.3e-32	98.6
WP_079548730.1\|2423145_2423430_+	hypothetical protein	A0A0P0HSI5	Acinetobacter_phage	6.8e-45	98.9
WP_000005652.1\|2423433_2423691_+	hypothetical protein	A0A0P0J0B1	Acinetobacter_phage	3.2e-46	96.5
WP_000910238.1\|2423691_2423961_+	hypothetical protein	A0A0N7IRE8	Acinetobacter_phage	3.5e-43	100.0
WP_049592470.1\|2423966_2425229_-\|integrase	integrase family protein	A0A0P0IKP2	Acinetobacter_phage	3.6e-247	99.3
2429265:2429280	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2796962 : 2811765

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000566784.1\|2796962_2797538_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.2e-110	100.0
WP_079548842.1\|2800417_2803150_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	0.0e+00	98.4
WP_001982145.1\|2803506_2804556_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.8e-190	100.0
WP_000608305.1\|2804565_2805372_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	6.7e-146	99.3
WP_000066126.1\|2805381_2806077_+	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	5.8e-122	100.0
WP_002069945.1\|2806087_2807071_-	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	7.3e-187	98.2
WP_002157704.1\|2807077_2809453_-	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	98.4
WP_079548843.1\|2809454_2810954_-	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	7.2e-279	96.8
WP_001187844.1\|2811216_2811765_+	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.7e-97	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage