CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_LT599052	Lactococcus lactis subsp. lactis strain A12 plasmid pA12-3, complete sequence	0 crisprs	NA	0	1
NZ_LT599051	Lactococcus lactis subsp. lactis strain A12 plasmid pA12-2, complete sequence	0 crisprs	NA	0	0
NZ_LT599049	Lactococcus lactis subsp. lactis strain A12 chromosome 1	5 crisprs	cas3,DEDDh,csa3,DinG	0	10
NZ_LT599050	Lactococcus lactis subsp. lactis strain A12 plasmid pA12-1, complete sequence	0 crisprs	NA	0	0
NZ_LT599053	Lactococcus lactis subsp. lactis strain A12 plasmid pA12-4, complete sequence	1 crisprs	NA	2	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11569 : 19782

Streptococcus_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068872863.1\|11569_14488_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.2e-133	30.7
WP_021722013.1\|14532_15099_-	recombinase family protein	A0A219YA40	Aeromonas_phage	1.1e-22	37.8
WP_003130771.1\|15095_15605_-	MepB family protein	NA	NA	NA	NA
WP_003130770.1\|15604_15793_-	hypothetical protein	NA	NA	NA	NA
WP_002375293.1\|16929_17226_+	BRCT domain-containing protein	A0A1S5SEW3	Streptococcus_phage	5.5e-05	38.1
WP_011835124.1\|17985_18186_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.4e-28	93.9
WP_021721705.1\|18464_18665_-	cold shock domain-containing protein	A0A1X9IGI9	Lactococcus_phage	1.1e-12	53.1
WP_010890648.1\|19101_19782_+\|transposase	IS6-like element ISS1S family transposase	A0A1X9I6C6	Streptococcus_phage	8.5e-110	84.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LT599049

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT599049_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT599049_1

1211892-1211988

Orphan

Consensus_repeat	Method
CTTCCTCTGGTCGCATTGAACTGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT599049_1

>merge|NZ_LT599049|1|1211892-1211988|CRISPRCasFinder
CTTCCTCTGGTCGCATTGAACTGATAGAAATTTCAGCAAAGCTGAAACTTCCCTTATCCACCGATTCAATGACTTCCTTTGGTCGCATTGAACTGAT

>NZ_LT599049|1|1|1211892-1211988|CRISPRCasFinder
CTTCCTCTGGTCGCATTGAACTGAT	AGAAATTTCAGCAAAGCTGAAACTTCCCTTATCCACCGATTCAATGA
CTTCCTTTGGTCGCATTGAACTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT599049.1\|WP_010905790.1\|1210758_1211658_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NZ_LT599049.1\|WP_015426362.1\|1216744_1217605_+\|Rgg/GadR/MutR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273772
NZ_LT599049.1\|WP_003132116.1\|1207680_1208967_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_LT599049.1\|WP_003132120.1\|1210116_1210716_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_021721819.1\|1204936_1205434_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239646
NZ_LT599049.1\|WP_074453813.1\|1220219_1221446_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_LT599049.1\|WP_021721823.1\|1212381_1213668_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_LT599049.1\|WP_021721827.1\|1221468_1221858_+\|DUF4430-domain-containing-protein	unknown	unknown	gnl\|CDD\|379618
NZ_LT599049.1\|WP_021721824.1\|1215302_1216370_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270381
NZ_LT599049.1\|WP_021721818.1\|1203860_1204934_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657
NZ_LT599049.1\|WP_010905791.1\|1214454_1215255_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_LT599049.1\|WP_021721821.1\|1208971_1209862_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_LT599049.1\|WP_032398530.1\|1206862_1207504_+\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|224345
NZ_LT599049.1\|WP_021721825.1\|1217703_1219962_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275272
NZ_LT599049.1\|WP_021721820.1\|1205452_1206736_+\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_LT599049.1\|WP_010905797.1\|1221820_1222384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_021721829.1\|1223022_1223370_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376279
NZ_LT599049.1\|WP_012897758.1\|1213664_1214453_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_LT599049.1\|WP_021721817.1\|1202814_1203864_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|223379
NZ_LT599049.1\|WP_003132106.1\|1202384_1202735_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|224456

Protein	Function_ID	Function_description	E-value
NZ_LT599049.1\|WP_010905790.1\|1210758_1211658_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	9.67355e-169
NZ_LT599049.1\|WP_015426362.1\|1216744_1217605_+\|Rgg/GadR/MutR-family-transcriptional-regulator	gnl\|CDD\|273772	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis. [Regulatory functions, DNA interactions].	3.59296e-20
NZ_LT599049.1\|WP_003132116.1\|1207680_1208967_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_LT599049.1\|WP_003132106.1\|1202384_1202735_+\|dihydroneopterin-aldolase	gnl\|CDD\|224456	COG1539, FolB, Dihydroneopterin aldolase [Coenzyme metabolism].	1.08547e-32
NZ_LT599049.1\|WP_021721819.1\|1204936_1205434_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239646	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	8.48755e-11
NZ_LT599049.1\|WP_074453813.1\|1220219_1221446_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.21886e-39
NZ_LT599049.1\|WP_021721823.1\|1212381_1213668_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.79866e-158
NZ_LT599049.1\|WP_021721824.1\|1215302_1216370_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270381	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This group represents the periplasmic substrate-binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.47836e-143
NZ_LT599049.1\|WP_021721818.1\|1203860_1204934_+\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.4812e-110
NZ_LT599049.1\|WP_010905791.1\|1214454_1215255_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.39006e-80
NZ_LT599049.1\|WP_021721821.1\|1208971_1209862_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	1.00993e-112
NZ_LT599049.1\|WP_032398530.1\|1206862_1207504_+\|deoxynucleoside-kinase	gnl\|CDD\|224345	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism].	7.04076e-96
NZ_LT599049.1\|WP_021721825.1\|1217703_1219962_+\|radical-SAM-protein	gnl\|CDD\|275272	TIGR04479, bcpD_PhpK_rSAM, radical SAM P-methyltransferase, PhpK family. Characterized members of this family are B12-binding domain/radical SAM domain enzymes that use methylcobalamin as a methyl donor to methylate a phosphorous atom during the biosynthesis of natural products such as bialaphos and phosalacine. These syntheses create an extremely rare C-P-C bond. All members of the seed alignment derive from genomic regions that include a non-ribosomal peptide synthase. Note that a single organism, Pelosinus fermentans JBW45 from Cr(VI)-contaminated groundwater, has eight additional homologs of unknown function that score between trusted and noise cutoffs of this model. [Cellular processes, Toxin production and resistance].	7.22812e-32
NZ_LT599049.1\|WP_021721820.1\|1205452_1206736_+\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	3.44311e-163
NZ_LT599049.1\|WP_021721829.1\|1223022_1223370_+\|hypothetical-protein	gnl\|CDD\|376279	pfam18860, AbiJ_NTD3, AbiJ N-terminal domain 3. Alpha + beta domain. Found fused to AbiJ-like HEPN. Fused to other domains presumably involved in defense.	3.36054e-30
NZ_LT599049.1\|WP_012897758.1\|1213664_1214453_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	6.79536e-82
NZ_LT599049.1\|WP_021721817.1\|1202814_1203864_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|223379	COG0302, FolE, GTP cyclohydrolase I [Coenzyme metabolism].	7.21092e-95
NZ_LT599049.1\|WP_021721827.1\|1221468_1221858_+\|DUF4430-domain-containing-protein	gnl\|CDD\|379618	pfam14478, DUF4430, Domain of unknown function (DUF4430). Although this family has overlaps with SLBB, the majority of its sequences are unique. Several family members, eg UniProtKB:A0RGA8, that do not overlap have an LPXTG-cell wall anchor at their C-terminus, a SSF_Family 10_polysaccharide_lyase or Glycosyltransferase structure associated with them in the middle region, as shown by InterPro, as well as this domain at the N-terminus.	3.4262e-14

>NZ_LT599049.1|WP_010905790.1|1210758_1211658_+|UDP-N-acetylmuramate-dehydrogenase
MIKETDLENIPDLLVKFNEPLSKYTYTKVGGPADILAFPATIEALTELLVKAKSTDTAVTVLGNASNLIVRDGGIRGLVILLEKLESVKVAGYTIEAQAGAKLKEVTQVAQANSLTGFEFACGIPGSIGGAVFMNAGAYGGEISQVLVSCKVMDTDGNISVLTASEMQFGYRHSVIRDKNLVVLSAKFELQAGDPTQIQNEMNRLNFLRESKQPLEYPSCGSVFKRPVGHFAGQLIQEANLQGVRIGGVEVSKKHAGFMVNVANGNATDYEKLIAHVIDKVKENSGVTLEPEVRIIGEK
>NZ_LT599049.1|WP_003132120.1|1210116_1210716_+|hypothetical-protein
MAQTKKAKVRNLIIAAMLTALGILIPMIMPAKIIIGPASFTLASHVPVMAAMFFSPLMTAFVALGTTLGFMISIPVPTIWLRALMHLPVMTVGAYVLKKHPELVHQKVKIQIFNFILGIFHAGLETLVVYVFYSLGFANIDQAALLNLLLLIGFGGLVHSMIDFNLALGLCNVLSKAFPIDIFDKAKGFLNKKKVKAEI
>NZ_LT599049.1|WP_021721821.1|1208971_1209862_+|homoserine-kinase
MKIIVPATSANLGAGFDSIGIAVNLYLTVEVLEESNDWKIDHDLGNNIPTDEKNLLLTTLSAVLKAKNSSLSAKYHLKMTSEVPLARGLGSSSSVIIAGIELANQLAKLNLTTEEKLELACVIEGHPDNVAPALLGNLVIASTVADKTNYVSSDFPSCKLLAFVPDYELKTVESRKVLPKELAYKEAVAASSIANVLTANLLTKNLKVAGQMIESDRFHENYRASLVPELKILREIGHEFGAYGTYLSGAGPTVMLLLPDDKLNLLTEKINEQNLSGQLYSLEVDSNGLQVEESVL
>NZ_LT599049.1|WP_003132116.1|1207680_1208967_+|homoserine-dehydrogenase
MTVNIAILGFGTVGTGLPTLISENKEKLSKILDEEIVISKVLMRDEKAIEKARAQGYQYDFVLTLEEILADSEISIVVELMGRIEPAKTYITKVIKAGKNVVTANKDLLAVHGTELRALAEKHHVALYYEAAVAGGIPILRTLANSFSSDKITHLLGILNGTSNFMMTKMSEEAWTYDQSLAKAQELGYAESDPTNDVDGIDASYKLAILSEFAFGMTLSPDQISKSGLRTIQKTDVEIAQQFGYVLKLTGEINEVESGIFAEVSPTFLPKSHPLASVNGVMNAVFIESDGIGDSMFYGAGAGQKPTATSVLADIVRIVKREKDGTIGKSFNEYARPTSLANPHDIVNKYYFSVETPDSTGQLLRLVELFTSEDVSFEQVLQQKGDGHRAVVVIISHQINRVQLLAIQDKLKEEVDFKLLNYFKVLGD
>NZ_LT599049.1|WP_032398530.1|1206862_1207504_+|deoxynucleoside-kinase
MLIVLAGTIGAGKSSLAKALGEHLKTDVFYEAVDNNPVLDLYYQDPQKYAFLLQIYFLNKRFESIKMAYRQDNNVLDRSIFEDELFLTLNYKNGNVTKTELEIYQDLLANMLEELDGMPKKRPDLLVYIDVSFETMLSRIAQRGRSFEQIENQEGLKDYYAQVHDEYPDWYKNYNISPKLRIDGDSIDFVNNPEHLDEVLGQIDNELKKLDLL
>NZ_LT599049.1|WP_021721820.1|1205452_1206736_+|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MSIEEALEWIHSRLKFNIRPGLSRVSALLELLGHPEESLSMIHVAGTNGKGSTVAFTRSIFMQAGLKVASFTSPFITTFGERMSINALPIADDKLIYYVEMIQPLVAELDKDAELTGITEFEIITAMAFKYFADEQVDLAVIEVGLGGLLDSTNVIKPVVSGITTIGLDHIDILGSTIEEIAAQKAGIIKPGIPVVVGNIELKALRVIWEVARKNTARVYQFPYDYRTEVEEHEHFNFFSGQEAILDIEKSLVGLHQIENAGMAIELSLVYASKVGIELTEDVIRSGIREAFWPARMEKLGEKPLILLDGAHNVHAMNRLLENLSSEFADKKITIIFSAITTKDIRQMIKMLQTVKNSHLILTTFDYPKALNLGDFQRLEEEGVELAPSWELALVRAQKNLAEDDLLLVTGSLYFSSQVREFLKKEK
>NZ_LT599049.1|WP_021721819.1|1204936_1205434_+|NUDIX-domain-containing-protein
MNEDLIAEIQALSAIGSEEKFSEIIRLLKNSTLELRGKKNPDLQLSASALVFKKHKLFFIEHPYQKELLLPAGHVELGEKPLETAIREFHEETGFSASESGKLVDVNLINIPYNKIKNEKEHQHIDFRFLLELKEKEADLAELPFFLLDRTEAPDEFKKYYQYKR
>NZ_LT599049.1|WP_021721818.1|1203860_1204934_+|dihydropteroate-synthase
MKILELNQESFSLKNIILKFDELNQNELISLQKKLYRNGSLTRLTPDSLLVVLTIDDLAKLINLFENDEDKKMLEVIYKRHQIIWSGKNFNFDLTKKSIVYSIVNVTPDSFYDGNPDNLNLSHILKRVEADLENGASVLELGGKSSKPGYDDISPEEEWNRLKEPILELKKNFPKAIFAVDTDEAYVMERVLDAGVDIINDIDGFDTNDKLKVVEKYQPALVAMNNGRAGFSYADNVYEELPLFFENKKEELLQLGLKAEQIVIDPGVGFFNGDSGSDSLERVKATEILSRIGLPLMIAISRKSFMGKLFNAQGDERLFSSLVLEAQMVADGGRILRVHDVKETKRLLDAIEIYKEF
>NZ_LT599049.1|WP_021721817.1|1202814_1203864_+|GTP-cyclohydrolase-I-FolE
MQTTYLSMGSNIGDRQYYLHEAIRLLGKHPKIMIEKVSNFYESTPVGGVKQDDFTNLALKVATLLEPLELLSFIHEVELSLNRERKIHWGPRTIDIDIIFYGDLEMQEENLVIPHKEAFNRLFVLKPIFELIDKDFKYYASIEKAIAELSVSEQELHVIKEEKTPRNRIEDAVKEILFAVGENPNREGLLETPVRVAKMYEEILSSQRLSKFNEYKLFEIDSSKTDSIVLIKDIPFYSMCEHHMLPFFGKAHVAYIPADGKIIGLSKIPRLVDYVSRKLSVQENITHDIGDVLTDILNPKGVAVLVEGRHMCVEMRGVKKVNSITKTSYFLGEFKENNEKRMEFLESLL
>NZ_LT599049.1|WP_003132106.1|1202384_1202735_+|dihydroneopterin-aldolase
MYKIKLNNIKFRAHIGVLPEEKVLGQNLEIDLIVETNFDFSGKDELDETLSYVDFYEATKAVVESSKADLIEHVAFEIIQAVKATSERISTVEVHLRKLAVPIEGIFDSAEIEMRG
>NZ_LT599049.1|WP_021721823.1|1212381_1213668_+|ABC-transporter-ATP-binding-protein
MSKTIIEFKNVSKTYADTDTTVLKDISFELEEGKFYTLLGASGSGKSTILNIIAGLLDATDGDVILDNKRINDLPANKRNVHTIFQSYALFPNMNVFDNVAFALKIKGVDKKEIAKRVSESLKLVRLDGFEKRSITKLSGGQKQRVAIARAIIDRPKVLLLDESLSALDMKLRKDMQYELRELQQSLGITFIFVTHDQEEALAMSDWVFIMNEGEIVQSGTPTDIYDEPINHFVADFIGESNILNGRMIEDYLVEFNDQKFEAVDGGMRKNEPIEVVIRPEDIWFTLPDEGKFNVKVDTQLFRGVHYEIVAYDEFNNEWLIHSTHKAIVGETVGLDFDPEAIHIMRLNETEEEFDARIEEYVEEEETVGLANAVEEENAEEEAAIQEAVKEALENTMELTELAETVNEILQKQENESESENKESGANK
>NZ_LT599049.1|WP_012897758.1|1213664_1214453_+|ABC-transporter-permease
MTKRIYSVPYFLWILFFVIVPLAMLLWQSFFDLNGHFTLNNYILYFSSGTYLLMTWNSILYALIITVATLVISYPVAYVLTKLKMKQFWLMLIILPTWVNLLLKAYAFIGIFGKYGSVNNFLQFLGIGRTQILFTDLSFILVASYISIPFMVLPIFNALNDLDDNLVNASADLGASRFQTFTQVIWPLSLNGVRAGVQAVFIPSLSLFMLTRLIGGNKVITLGTAVEEHFLTTQNWGMGSTIAVVLVVAMLIVMRMTKERRD
>NZ_LT599049.1|WP_010905791.1|1214454_1215255_+|ABC-transporter-permease
MRNKNSLGKVYLTFVLILLYAPIFYLIFYSFNSGSDMSKFTGFTLDNFKTLFADSRLILIVVQTFFLAFLSSLIATVIGTIGALNLVKFKRRRRETLLGLNNVLMVSPDVVIGASFLILFTIVGMKLGFMSVLLSHIAFSIPIVVLMVMPLYQEMDSSLIDAANDLGANSSQIMREITLPYLTPGIIAGFFMAFTYSLDDFAVTFFVTGNDFTTLSVEIYSRARAGISLEINALSTLVFLFSILLVIGYYYIMRDSETVGKSSNLT
>NZ_LT599049.1|WP_021721824.1|1215302_1216370_+|ABC-transporter-substrate-binding-protein
MKKLSYFFVGILIITASLGLITNRMKAADGVKTQNNSLTIFNWGEYIDPDLISKFQKETGYKVNYMTFDSNEAMYSKVKQGGTAYDLIVPSDYMIEKTAKENLLIKLDHSKIKGLKDDDPKLLNPAFDQGNQYSVPYFWGTLGIVYNSKTVTRPPKTWNDIWSPTYKNSILLTDSVRDVMAMVLSKHGYSLNTTNQKELDIAYQDLLKLTPNVKAILGDEIMNYMINNETPLAVVYSGQAAEMTSENKNLKYVIPERTNIWYDNLAIPKTAKNVKAAYAFINFMQEPKNAAQNAQWIGYATPNLKAKALLPKEIRDNKSFYPDEVTIKDDEAYKNLNPYWTGIYNDLYLEFKMNK
>NZ_LT599049.1|WP_015426362.1|1216744_1217605_+|Rgg/GadR/MutR-family-transcriptional-regulator
MGNKTGKIFSILREAKHLTLREVTANEFSLAQESKFERGETSLTIDKFLLLLQNTQLSLDEFQDFYDNYSLSEDYTFHDELREAHRIKDLNQIKKWLHYWKEKSEKNSDKKYFKLNYIVSKVSLASTAGGNPTKDDIDVLMSYLDLVEQWGRYEIWVFSVCQHYLDDNMLDYYGTEIFDKSSYYKNVHQNQQMVIRTMLNLADTWLNRKKLEKALVCLNRVKTIGIPIEFFEEAITLRYLEGHYLHLLEDPKGKLMMQDCAKDIEKYGYTQAAQELYEEIYDLGEL
>NZ_LT599049.1|WP_021721825.1|1217703_1219962_+|radical-SAM-protein
MMKSMLIFPPGWDPRGPYLSLPVLKAYLQQNNQEVLIRDENVEFYDFFFSEQFFKRMSRETSTLKKSIYFNSTLHIQEAKDVIRSKDSKSWQRKFAWNVLSNLNYLAGKVYKGFEIDFNSMHFKYSHDSTSEIMKALSDRAANPLIEYFEKDFSTIEEIKNQEIEYIGFSVTGNTQLIPTLTMCKAIKELCPSVKHIQLGGNFITRISSLIGNLHPFWNYIDSMLLYDGEENLSSFLQQLENNKDYSNIPNLYYLDDHRNLKRNEIVESKTINSLPPDFDGFDFSKYFTDNLWIPIYTSRACVNKCTFCTIPNASGGKFRHMPAKKVVENMEVVKEKYGISHFSFVDETFLVPKMKQIAKLLIDNEQKDISWYCETRFSKLLTADTTQILRKGGCSNIQFGLESYNQRVLDLMDKNIDIAWIEPNIINCFEAGISVHLFFMTGFPTETLEEAKNTYHFANEMILKSKKDYGLPYSTKGFGTFGLEVGAGVYEKPEVFNIEILEPADDEDLRLSRDYNIHEGLTSDEAKQLVSTMRSSKISLQTSFDAQQFDIEFPKSILPSEIDLINEREKRAAERSYKVYGFCFENESLKINRYVSLIIDEETQMTLLYNVKHGIFLSYPTSDLQIGNAKITFALDNIKSDLAYYDFLELENSQEKYSTMDEIFEGKYKLCLNDYFFEHYNSTDLLIYNKMFKEVIQTNVLGHELLKYFTISHKIQEWFTEITRSGLNLPVEKLEKLIVDALESKVLKVRI
>NZ_LT599049.1|WP_074453813.1|1220219_1221446_+|MFS-transporter
MSRCLSEFAGAILPVVFPLFILKTTHSLSLSGLFFTITMLPSVLLTPAMGVWIEKYEKKKVTFFSVLTLAILCSIESMLLKFGRYDFIYLVCFAILVAIFSMMLDLSSKVLFTELVDESELEKYNGIRSILDNLSVFGAPMLGTLVYGVFGFSSVILILAILYVLAAVVIAFIPLESKNGGNDQIVEESFVQKFRIGLHFIRTEKAILKYFLLIMALNFFVASSEEVTNPGIAIQKYHLPTSIFGLVSIAFSIGVILSGIFIAKNSKIEFRKHISKLFVLNSLVMVLIGFSSVFLISFNAFVFFGLMLFFEVLLGFITILVNVPMTSFFQSQVPLNIQSRFFALLSFSANLIVPLGILYTGFLASAIGADVTYIINNILVIVIVCFAFWKEIGRGFRAFLLKKWKMSK
>NZ_LT599049.1|WP_021721827.1|1221468_1221858_+|DUF4430-domain-containing-protein
MKKIVKNLQVIVALVFALVMLSACFTSKSELPRNTSNAHSNKENTVTVIIEGKSKRYQVKKGTTLLSFAISQLNAKEHEGFITSVGNLRQNTKESIYLMFDINGKRSVIGAGGVKIINGEKIRFYLEKY
>NZ_LT599049.1|WP_010905797.1|1221820_1222384_+|hypothetical-protein
MVKKSDFIWKNTKLTVRKLTLIAMTIALCSVIRFPFSYLPNITPLTTIYLLICLNIGLSEAIIIADMTIIATSVYLGMGYWVVGQLLAYSLIIFLYWLFIKIDIMKFLIMQAILCLILGLIYGIVISMFEVFVLQISSFEIYYIAGLPFDLMHGLGNFLFMILVFRPARILKRQFNSLTRFYNDDSV
>NZ_LT599049.1|WP_021721829.1|1223022_1223370_+|hypothetical-protein
MEITELIRHDIFDLFENGCIEQIYFGSDKKYFYPYYGRLKEIDFLKRIYPLENMVTTDERFNNVEEEMWQHIINNDAWNFGCVFNDSRFDLMDGPDSTLLEFLCEIFHPISITQG

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Crispr_ID: NZ_LT599049_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT599049_2

1481471-1481569

Orphan

Consensus_repeat	Method
CTATCCATAAAATGCTCGCTTTGGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT599049_2

>merge|NZ_LT599049|2|1481471-1481569|CRISPRCasFinder
CTATCCATAAAATGCTCGCTTTGGTCGCTAACGAACGAGAGAATTATCAGTTCCACTGACAATTCTTTTAACTATCGATAAAATGCTCGCTTTGGTCGC

>NZ_LT599049|2|2|1481471-1481569|CRISPRCasFinder
CTATCCATAAAATGCTCGCTTTGGTCGC	TAACGAACGAGAGAATTATCAGTTCCACTGACAATTCTTTTAA
CTATCGATAAAATGCTCGCTTTGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT599049.1\|WP_021722822.1\|1480224_1480689_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225613
NZ_LT599049.1\|WP_021722814.1\|1491359_1492286_-\|glycosidase-/-glucoside-hydrolase-family-113	unknown	unknown	gnl\|CDD\|381624
NZ_LT599049.1\|WP_012897967.1\|1485346_1486063_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_LT599049.1\|WP_012897970.1\|1488105_1488942_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_LT599049.1\|WP_021722825.1\|1475531_1476557_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_LT599049.1\|WP_015426580.1\|1479492_1480209_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NZ_LT599049.1\|WP_021722823.1\|1478536_1479496_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_LT599049.1\|WP_021722815.1\|1489926_1491246_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_LT599049.1\|WP_021722821.1\|1481624_1482560_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NZ_LT599049.1\|WP_003131089.1\|1478015_1478546_+\|Gx-transporter-family-protein	unknown	unknown	gnl\|CDD\|227110
NZ_LT599049.1\|WP_012897960.1\|1477611_1478019_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NZ_LT599049.1\|WP_021722818.1\|1487554_1488109_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_021722826.1\|1474713_1475340_-\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	unknown	unknown	gnl\|CDD\|227252
NZ_LT599049.1\|WP_012897965.1\|1482632_1483421_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NZ_LT599049.1\|WP_032946907.1\|1488941_1489853_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_LT599049.1\|WP_068872821.1\|1486134_1487562_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_LT599049.1\|WP_003131084.1\|1473390_1474569_-\|toxic-anion-resistance-protein	unknown	unknown	gnl\|CDD\|377557
NZ_LT599049.1\|WP_021722820.1\|1483819_1485184_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341046
NZ_LT599049.1\|WP_017864588.1\|1476599_1477541_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_LT599049.1\|WP_012897963.1\|1480690_1481404_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695

Protein	Function_ID	Function_description	E-value
NZ_LT599049.1\|WP_021722822.1\|1480224_1480689_-\|hypothetical-protein	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	0.000268693
NZ_LT599049.1\|WP_021722814.1\|1491359_1492286_-\|glycosidase-/-glucoside-hydrolase-family-113	gnl\|CDD\|381624	cd19606, GH113-like, Glycoside hydrolase family 113 beta-mannosidase and similar proteins. Family 113 glycoside hydrolases cleave (1->4)-beta-glycosidic linkages, such as endo-1,4-beta-mannanase. This family also includes TIM-barrel domains found in gene transfer agent proteins.	1.84407e-93
NZ_LT599049.1\|WP_012897967.1\|1485346_1486063_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.82476e-68
NZ_LT599049.1\|WP_012897970.1\|1488105_1488942_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.52096e-59
NZ_LT599049.1\|WP_021722825.1\|1475531_1476557_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	6.43092e-178
NZ_LT599049.1\|WP_015426580.1\|1479492_1480209_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	2.72805e-85
NZ_LT599049.1\|WP_021722823.1\|1478536_1479496_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	3.06234e-84
NZ_LT599049.1\|WP_021722815.1\|1489926_1491246_-\|extracellular-solute-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	8.7477e-32
NZ_LT599049.1\|WP_021722821.1\|1481624_1482560_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	0
NZ_LT599049.1\|WP_003131089.1\|1478015_1478546_+\|Gx-transporter-family-protein	gnl\|CDD\|227110	COG4769, COG4769, Predicted membrane protein [Function unknown].	1.74231e-64
NZ_LT599049.1\|WP_012897960.1\|1477611_1478019_+\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	7.84966e-52
NZ_LT599049.1\|WP_021722826.1\|1474713_1475340_-\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	gnl\|CDD\|227252	COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only].	1.22633e-88
NZ_LT599049.1\|WP_012897965.1\|1482632_1483421_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	1.30532e-108
NZ_LT599049.1\|WP_032946907.1\|1488941_1489853_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.82317e-70
NZ_LT599049.1\|WP_068872821.1\|1486134_1487562_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_LT599049.1\|WP_003131084.1\|1473390_1474569_-\|toxic-anion-resistance-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	2.06226e-124
NZ_LT599049.1\|WP_021722820.1\|1483819_1485184_-\|MFS-transporter	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.66402e-66
NZ_LT599049.1\|WP_017864588.1\|1476599_1477541_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	7.66874e-173
NZ_LT599049.1\|WP_012897963.1\|1480690_1481404_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	9.35831e-135

>NZ_LT599049.1|WP_012897963.1|1480690_1481404_-|orotidine-5'-phosphate-decarboxylase
MQENRPVIALDFPEFSDVKDFLEKFDPSEQLYIKLGMELFYTAGPQVVYYVKSLGHSVFLDLKLHDIPNTVESSMRVLARLGVDMVNVHAAGGVEMMVAAKRGLEAGTPVGRQRPKLIAVTQLTSTSEEIMQNDQKIMTSLEESVINYAQKTAQAGLDGVVCSAHEVEKIKAATSKEFICLTPGIRPEGASKGDQKRVMTPKEARTIGSDYIVVGRPITQAKDPVASYHAIKAEWNQ
>NZ_LT599049.1|WP_021722822.1|1480224_1480689_-|hypothetical-protein
MKKLLHFLVVLLGIFVAFILARLFIEIYTIVGDVYLQVDNKTITLYKVLAEIDYLSVGITFAMVFAYMILLDLIVVIVVRSWFKIQNKSQKQSQKVWKNKFTKFWFRYRSIHITFILLSIFTSLSLTAPAMVMNSFTAIVSISVLVINLSKKIG
>NZ_LT599049.1|WP_015426580.1|1479492_1480209_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTPDEFLSALTEFDIQLSDKQIKQFERYFELLVEWNEKINLTAITEKNEVYLKHFYDSIAPILYGLITDQPVSILDIGAGAGFPSLPMKIIFPELKVTIIDSLNKRINFLSLLTEELGLENVTLLHGRAEDFGQDTNYRGTFDFVTARAVARLSVLTEFTIPFLKKNGILLSLKAAQFEEELNDAKKAIATLGGKFIKEVAYELPNGDERHIALIEKKKETPKKYPRKAGTPAKNPIK
>NZ_LT599049.1|WP_021722823.1|1478536_1479496_+|polyprenyl-synthetase-family-protein
MDLKNNFWKDYPELEKELVQVQQLMKSHVTIKNSDVKSAIFDIFDAGGKMLRPAYLLLFSGFTDLSENERLALAASVEMIHTATLVHDDVIDHADTRRGVATLSAKYGSEIAVYAGDYLFIAVFRLMSEHSLELSNLTKNIGSIERLLGGELGQLNHHFNLQQTLDDYIENISGKTGELFALSASVAPLISKNNTLTKRAYKIGMNIGISFQIMDDYLDYASTAQTLGKPVLEDIKQGIYSAPVLFALQENNALVSELIKNEKFDEVYDFIKTSDALEKTKALAKSYTLSALNLIDKLPKGKNRELIAEITRKLLERTL
>NZ_LT599049.1|WP_003131089.1|1478015_1478546_+|Gx-transporter-family-protein
MNIKEYVYVSLLTAAAVVMGIIESSLPPFFAFAPGAKVGLANLVMIIAVFTLRWRQVWVMQILRLLITALFTGFSVFLYSFAGGILSLLAMYLMKQFGPKLVSMIGISTVGGFFHNFGQLAMASLLAKTTSVMLYLPWLAFFGILAGFAIGIAGNQLITRVKPIQELFIKESKQWT
>NZ_LT599049.1|WP_012897960.1|1477611_1478019_+|NusG-domain-II-containing-protein
MNFFKNTVNFFKSIKTKPLDFVIIFLLFIASFSTLFFFATGSKGAQAELRISGKVIKTFDLNKNQTWTYRDKDGDYNKIQVKNGEIAVVEANCKDQIDVQRGYISKTGETIVCLPHNLVIEVMSGQKDEQVDYKV
>NZ_LT599049.1|WP_017864588.1|1476599_1477541_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKQNAIPTKARKVRKAVIPAAGLGTRFLPATKAIAKEMLPIVDKPTIQFIVEEALKSGIEDILIVTGKAKRPIEDHFDSNIELEQNLLEKGKTELLKLVEETTDINLHFIRQSHPKGLGHAVLQAKAFVGNEPFVVMLGDDLMNITGNETPLTKDLINDYEKTHASTIAVMKVPHDDVDKYGVIDPNGEVSKGLYNVERFVEKPNVDEAPSDLAIIGRYLLTPEIFDVLETQVPGAGNEIQLTDAIERLNKTQRVFAHEFTGKRYDVGDKLGFVETTIEYGLEHPQIGANLKNYIIEKAKELSKDDSKNITKK
>NZ_LT599049.1|WP_021722825.1|1475531_1476557_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MNPQKIAVLGPGSWGTALSQVLNDNGHEVRIWGNNPEQMAEINEKHTNTRYFKDVVLDEKIKAFDRLDLALEDVDAILFVVPTKVTRLVAKQVAEVLKHKVHILHASKGLEQGTHERISTILEEEILAQLRGEIVVVSGPSHAEETIVRDITLISAASKDHDEAKYAQAIFSNDYFRLYTNTDVVGVETAGALKNIIAVGAGALHGLGFGDNAKAAIITRGLAEITRLGVAMGAEPLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGEKLADIEKNMGMVIEGVSTTKAAFELAQQLDIDMPITETIYKVLYENLDAKTGILDIMRRETRAENEFINNK
>NZ_LT599049.1|WP_021722826.1|1474713_1475340_-|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein
MPVSLFMNHQDMMFGYGHLGIVNVIFGLVLFFLIIKMIIGISFMRKNPDEREEGYKDKGMSKKENIERYHEAGLSDTDIKIFRENLSEAKENIKTWEKLLKKEDDLQVVESVTGGLEASKQTFKYIVQNPQELTKQNEFLYKDLPNMVKLSEKFIEMKKQSVRTEEINRDLDETLLLIKTLSHSISKNYHEILMDDVNVIKHQVNFDK
>NZ_LT599049.1|WP_003131084.1|1473390_1474569_-|toxic-anion-resistance-protein
MDNPILDDLMTNDKVIKEAEQLDEQQKSEIVKMHEKASLAAVEVLSTEELEKAKELSKQLDESSAQSVINYGASAQDKISAFSQSVLNKVQAQDLGEVGSSLTDLMFNLQQANPNELVAENKGIFTKMFGKVKRSIFEVTQKYQKIGAGIDKISAKLNNEQQGLLQDNEMLDKLYDENLNYFKALNVYIAGAELKVQELDTEIIPQARKEAQDSTDNALIVQKVNDLESYKNRLEKRAHDLRLARQLTIQQAPQIRLIQNTNQELAEKIQTSINTAIPLWKNQVAIALTLLKQKDALTSQRIVSETTNDLLRKNSEMLKASTIEAATENERGLVDIETLKLTQQNLVDTIQETMRIQAEGRQKRQQGEVELSKMEEEIKEKLLQLSNNKQLN
>NZ_LT599049.1|WP_021722821.1|1481624_1482560_-|dihydroorotate-dehydrogenase
MTENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMAEKLPWLNENFPDLPIIANVAGSEEDDYVAVCAKIGDAPNVKAIELNISCPNVKHGGQAFGTDPDAAAALVKACKAVSKVPLYVKLSPNVSDIVPIAKAVEHACADGLTMINTLMGVRFDLKTRKPVLANITGGLSGPAIKPVALKLIHQVAQVVDIPIIGMGGVESAQDVLEMYMAGASAVAVGTANFADPFVCPKIIEKLPEVMDQYGIDSLENLIQEVKNSKK
>NZ_LT599049.1|WP_012897965.1|1482632_1483421_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MPKLQEMMTIVSQREVASNIFEMVLKGELVEEMDLPGQFLHLAVPNANMLLRRPISISSWDKVAKTCTILYRIGDETSGTYEISKLQTGAKIDVMGPLGNGFPVDEVVSTDKILIVGGGIGVPPLYELAKQLEEKNCQMTILLGFASEKVKILEKEFAELKNVSLKIATDDGSYGTKGHVGMLMEEVDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDENHALKVCEDGPVFLGKQLSL
>NZ_LT599049.1|WP_021722820.1|1483819_1485184_-|MFS-transporter
MNKNNHFHLLGAVIATGILSFSGVLIETAMNVTFPTLINEFGLSTSKIQWVTTIYLLVIAITIPLSSYFNERFSARKLFLVANLIFLVGVLTNCFSPNFAMLLFGRLLQGVGTGIGLPLMFHLILTKAPLHKRGMMMGIGTLTTSIAPAIGPTYGGIISNSLDWRYIYIFLLPLVVISLVLGLACLPREGAKTPKKLALRPVIALSIMFFAFISALSAEHLMTFALLFIVGLVGAFLFVRFNRKESLIDLGILQNHRFVALIFSLLVYQALLLGLSFVLPSFIQVSAGFSSSVAGLFMFPGALIGAVLAPISGKVLDQIGARKPITTGLILAALGLALLFVFLPTKSLALLLVAHIVLMLGLGISYSNLMTCSLSTLATDQLSDGNALVNTLQQFIGAVATAVVATTLSIFQGLNGFKVGTSHGTSIILALFFILIIVSLIVSFPNLKKIRANH
>NZ_LT599049.1|WP_012897967.1|1485346_1486063_-|GntR-family-transcriptional-regulator
MNKYAKIRNDVRNKIISGKYKPGTLLPKESEMIMKYSASKLTIKKAMDELVNEGLIVKRRGSGTFVKGLSTEDIEKLKVVNQFQGSSAFFADKVVESRILVFEVVKSEPEIMERLGLSEVSDLYHVVRTRLIDGEPYVIESTYMPVDLIKNLTFEICSGSIYEYIEDELGLTIGSAHRRIEARKGTDEELTELGGEFGDPIVLVSQVGYLSDGRTFEFSTNVHRYDKYAFETVLMHKN
>NZ_LT599049.1|WP_068872821.1|1486134_1487562_-|glycoside-hydrolase-family-1-protein
MTKLIFPKEFWWGAATSGPQTEGRFKKKGANIFDYDFEKFPEHFWQGIGPDMASNFYNDFREDIKLMKKAGLNSVRTSIQWSRLIDDLEEGTVNQDAVDFYNAVIDEFIANGIRPVINLHHFDLPVDLLHKYGGWTNKHVITLYVKFAEQCFKLFSDRVSDWFTHNEPMVVVEGGYLYQFDYPDLVDGKLAVQVAYNLQLASSLAIQKFHEINQNPNGKIGIVLNLSPNYPASEDKKDIASAHIADLWQNQLFMDASVKGEFPKELVEILTKDKVIWQSTKEELAIIKNNKVDRLGVNYYHPNRAQKPYYSSDSLAVDWLPNKYFANYQMLGARMNVDKGWEIYPRALYEIAKNIQENYDNIPWFVSECGMGVSNEERYLNEEGQIDDDYRIQFIQEHLYWLHQAIEEGSSCFGFHLWTPIDCFSWRNSYRNRYGLISVNIHTQEKTLKKSAYYFKNLAEHSVLELSEEFFDKFN
>NZ_LT599049.1|WP_021722818.1|1487554_1488109_-|hypothetical-protein
MKVSGFIWFVQQVYMIIIASLMFWLNFLLGFVFLGTTFSFKRTFAYIEGTYYDKYHERTKEVKLKFEWSNLILLFTVGVFTLASHFPLSNLSTFLILVSLAYFVLTLIYIIFKTYYRLEKFTDVMQKLMGNWTMAIYSLMLIILAIFLTGFNRVWFLFFIPGLFCKMIDISFKHLDKKKVKIND
>NZ_LT599049.1|WP_012897970.1|1488105_1488942_-|carbohydrate-ABC-transporter-permease
MNKTNKKVFHIGDVLKYIPLVLAAIVAVLPLLVVFIGSFKSMTEFTNSGVLTLPKHFSIDNYTKAFTEGNMLTGFKNTVIIFVVSMVGQLLISSSFAYVMNRFEFRLKRLILALFTIAMLIPAITSQVAVFQLVNKLGLVGTRWSVIILYIGTNVIALYIFLQFLQEIPYSLDESALLDGASYFRIFWSIILPNLKAPIVTMVIISGVGVYNDFYNPYLYMPDPSLQVISTALFAFKGSSVVQWPVILAGVMIVIIPILIVFIVLQKYIYNGVTGAVK
>NZ_LT599049.1|WP_032946907.1|1488941_1489853_-|sugar-ABC-transporter-permease
MLEVLILSKLSQKAQKRLIIFSFTIVPIVLLLMFSYYPLVKMVQYSLTDWNGISPSSNYVGFANYEKVFSNPNYFGVFKTSLYYFLSSFPQLGLALLFATILSFKVKFANFWKGILFFPYLLNGVAIGFMFLYFYKTGGTLDSLLHLIGIHHLPLWLGNQSINNISLSFVSIWRYMGFNFLIFLGAIQSVDPEIYEAAEIDGANRWNQFRYIIIPAIRNILFLNIILSVSGSLSVFEVPYIMTGGANGTMTFVIQTVQTAFNYNQVGLASAMAVILLIIVVLVSAAQFILTQDRSDAKKKGGV
>NZ_LT599049.1|WP_021722815.1|1489926_1491246_-|extracellular-solute-binding-protein
MKKRYIFGSLAIMGLAALTLAACGSKTSSSGTGKNIKATITFVNQKTDMHSNGMWKKYIAEFNKEYPNITIKEQALNNYDQTEQTRMSSKNFGDVVAIPAAVAPKDYPNFFSSLGKTKDLEKKYTSLQDRTYKGEQYGLPSEVNANGFVVNWNVFKKASIDKWPTTTDEFIQDLKTIKAKLPDVTPLYTNYACGWALVDWDFQRSSVAGDPNFDLALAKTDKPFTEGQPMYTIYNTLYTAAKDGLINHDPTTDDWNTSVSQMAKNKVAVMMLATWAVPQVQSQMSSNKDAINVEPFPQTAPDGKTYMLVGGDYNWGVNKNSKNQEAAKDWVNWLVDKSDFAKDNGGMTAMKNQPYPTDLNDAKKNGVVFFEAGSTPADKADLFSNINNGSQVGIGTTQTVKQQIIDSGIGSSKKSFASIMDGLNTAWSQNVKQYNPDKK
>NZ_LT599049.1|WP_021722814.1|1491359_1492286_-|glycosidase-/-glucoside-hydrolase-family-113
MKAIKAASFGYYAKSGELNNDYAQWSMKTLKERTNINTIVLTIVAEQANAHATSINWQTMPPKDEEVKATIRYAQSLGLDVILKPMINCTDGTWRAYINFFDIDVVCEPKWSDWFAVYTEFQLYYAKIAQECEATMFVVGCELVSSDHREKEWRKLIDDVREIYKGLITYNCDKYQENHLTWWDAVDVISSSGYYPFDQWDKELRRIEKVIKKYDKPFFFCEAGAPSIDGGDLLPNDWTIKGEVNLEAQTRYYKGMLTACAKVDFVLGFGLWDWKAQVYSEDQARFDKDYAFYNKPAEKLIKDYYDKP

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Crispr_ID: NZ_LT599049_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT599049_3

1483491-1483592

Orphan

Consensus_repeat	Method
CTCATGTTAATCGCATTACTGACAGAAAGTTCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT599049_3

>merge|NZ_LT599049|3|1483491-1483592|CRISPRCasFinder
CTCATGTTAATCGCATTACTGACAGAAAGTTCAGCTTACTGAACCTTCTTTTATTCATCGATAAAATGCTCATGTTAATTGCATTACTGACAGAAAGTTCAG

>NZ_LT599049|3|3|1483491-1483592|CRISPRCasFinder
CTCATGTTAATCGCATTACTGACAGAAAGTTCAG	CTTACTGAACCTTCTTTTATTCATCGATAAAATG
CTCATGTTAATTGCATTACTGACAGAAAGTTCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT599049.1\|WP_021722812.1\|1493490_1494702_+\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|226711
NZ_LT599049.1\|WP_021722822.1\|1480224_1480689_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225613
NZ_LT599049.1\|WP_021722814.1\|1491359_1492286_-\|glycosidase-/-glucoside-hydrolase-family-113	unknown	unknown	gnl\|CDD\|381624
NZ_LT599049.1\|WP_012897967.1\|1485346_1486063_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_LT599049.1\|WP_021722821.1\|1481624_1482560_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NZ_LT599049.1\|WP_015426580.1\|1479492_1480209_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NZ_LT599049.1\|WP_021722823.1\|1478536_1479496_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_LT599049.1\|WP_021722815.1\|1489926_1491246_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_LT599049.1\|WP_003131089.1\|1478015_1478546_+\|Gx-transporter-family-protein	unknown	unknown	gnl\|CDD\|227110
NZ_LT599049.1\|WP_012897960.1\|1477611_1478019_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NZ_LT599049.1\|WP_021722813.1\|1492385_1493324_+\|acetylxylan-esterase	unknown	unknown	gnl\|CDD\|368448
NZ_LT599049.1\|WP_021722818.1\|1487554_1488109_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_021722825.1\|1475531_1476557_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_LT599049.1\|WP_012897965.1\|1482632_1483421_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NZ_LT599049.1\|WP_032946907.1\|1488941_1489853_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_LT599049.1\|WP_068872821.1\|1486134_1487562_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_LT599049.1\|WP_012897970.1\|1488105_1488942_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_LT599049.1\|WP_012897963.1\|1480690_1481404_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_LT599049.1\|WP_017864588.1\|1476599_1477541_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_LT599049.1\|WP_021722820.1\|1483819_1485184_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341046

Protein	Function_ID	Function_description	E-value
NZ_LT599049.1\|WP_021722822.1\|1480224_1480689_-\|hypothetical-protein	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	0.000268693
NZ_LT599049.1\|WP_021722814.1\|1491359_1492286_-\|glycosidase-/-glucoside-hydrolase-family-113	gnl\|CDD\|381624	cd19606, GH113-like, Glycoside hydrolase family 113 beta-mannosidase and similar proteins. Family 113 glycoside hydrolases cleave (1->4)-beta-glycosidic linkages, such as endo-1,4-beta-mannanase. This family also includes TIM-barrel domains found in gene transfer agent proteins.	1.84407e-93
NZ_LT599049.1\|WP_012897967.1\|1485346_1486063_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.82476e-68
NZ_LT599049.1\|WP_021722821.1\|1481624_1482560_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	0
NZ_LT599049.1\|WP_015426580.1\|1479492_1480209_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	2.72805e-85
NZ_LT599049.1\|WP_021722823.1\|1478536_1479496_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	3.06234e-84
NZ_LT599049.1\|WP_021722815.1\|1489926_1491246_-\|extracellular-solute-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	8.7477e-32
NZ_LT599049.1\|WP_003131089.1\|1478015_1478546_+\|Gx-transporter-family-protein	gnl\|CDD\|227110	COG4769, COG4769, Predicted membrane protein [Function unknown].	1.74231e-64
NZ_LT599049.1\|WP_012897960.1\|1477611_1478019_+\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	7.84966e-52
NZ_LT599049.1\|WP_021722813.1\|1492385_1493324_+\|acetylxylan-esterase	gnl\|CDD\|368448	pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyze the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan.	6.87521e-104
NZ_LT599049.1\|WP_021722812.1\|1493490_1494702_+\|SPFH-domain-containing-protein	gnl\|CDD\|226711	COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism].	1.25756e-167
NZ_LT599049.1\|WP_021722825.1\|1475531_1476557_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	6.43092e-178
NZ_LT599049.1\|WP_012897965.1\|1482632_1483421_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	1.30532e-108
NZ_LT599049.1\|WP_032946907.1\|1488941_1489853_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.82317e-70
NZ_LT599049.1\|WP_068872821.1\|1486134_1487562_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_LT599049.1\|WP_012897970.1\|1488105_1488942_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.52096e-59
NZ_LT599049.1\|WP_012897963.1\|1480690_1481404_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	9.35831e-135
NZ_LT599049.1\|WP_017864588.1\|1476599_1477541_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	7.66874e-173
NZ_LT599049.1\|WP_021722820.1\|1483819_1485184_-\|MFS-transporter	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.66402e-66

>NZ_LT599049.1|WP_012897965.1|1482632_1483421_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MPKLQEMMTIVSQREVASNIFEMVLKGELVEEMDLPGQFLHLAVPNANMLLRRPISISSWDKVAKTCTILYRIGDETSGTYEISKLQTGAKIDVMGPLGNGFPVDEVVSTDKILIVGGGIGVPPLYELAKQLEEKNCQMTILLGFASEKVKILEKEFAELKNVSLKIATDDGSYGTKGHVGMLMEEVDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDENHALKVCEDGPVFLGKQLSL
>NZ_LT599049.1|WP_021722821.1|1481624_1482560_-|dihydroorotate-dehydrogenase
MTENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMAEKLPWLNENFPDLPIIANVAGSEEDDYVAVCAKIGDAPNVKAIELNISCPNVKHGGQAFGTDPDAAAALVKACKAVSKVPLYVKLSPNVSDIVPIAKAVEHACADGLTMINTLMGVRFDLKTRKPVLANITGGLSGPAIKPVALKLIHQVAQVVDIPIIGMGGVESAQDVLEMYMAGASAVAVGTANFADPFVCPKIIEKLPEVMDQYGIDSLENLIQEVKNSKK
>NZ_LT599049.1|WP_012897963.1|1480690_1481404_-|orotidine-5'-phosphate-decarboxylase
MQENRPVIALDFPEFSDVKDFLEKFDPSEQLYIKLGMELFYTAGPQVVYYVKSLGHSVFLDLKLHDIPNTVESSMRVLARLGVDMVNVHAAGGVEMMVAAKRGLEAGTPVGRQRPKLIAVTQLTSTSEEIMQNDQKIMTSLEESVINYAQKTAQAGLDGVVCSAHEVEKIKAATSKEFICLTPGIRPEGASKGDQKRVMTPKEARTIGSDYIVVGRPITQAKDPVASYHAIKAEWNQ
>NZ_LT599049.1|WP_021722822.1|1480224_1480689_-|hypothetical-protein
MKKLLHFLVVLLGIFVAFILARLFIEIYTIVGDVYLQVDNKTITLYKVLAEIDYLSVGITFAMVFAYMILLDLIVVIVVRSWFKIQNKSQKQSQKVWKNKFTKFWFRYRSIHITFILLSIFTSLSLTAPAMVMNSFTAIVSISVLVINLSKKIG
>NZ_LT599049.1|WP_015426580.1|1479492_1480209_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTPDEFLSALTEFDIQLSDKQIKQFERYFELLVEWNEKINLTAITEKNEVYLKHFYDSIAPILYGLITDQPVSILDIGAGAGFPSLPMKIIFPELKVTIIDSLNKRINFLSLLTEELGLENVTLLHGRAEDFGQDTNYRGTFDFVTARAVARLSVLTEFTIPFLKKNGILLSLKAAQFEEELNDAKKAIATLGGKFIKEVAYELPNGDERHIALIEKKKETPKKYPRKAGTPAKNPIK
>NZ_LT599049.1|WP_021722823.1|1478536_1479496_+|polyprenyl-synthetase-family-protein
MDLKNNFWKDYPELEKELVQVQQLMKSHVTIKNSDVKSAIFDIFDAGGKMLRPAYLLLFSGFTDLSENERLALAASVEMIHTATLVHDDVIDHADTRRGVATLSAKYGSEIAVYAGDYLFIAVFRLMSEHSLELSNLTKNIGSIERLLGGELGQLNHHFNLQQTLDDYIENISGKTGELFALSASVAPLISKNNTLTKRAYKIGMNIGISFQIMDDYLDYASTAQTLGKPVLEDIKQGIYSAPVLFALQENNALVSELIKNEKFDEVYDFIKTSDALEKTKALAKSYTLSALNLIDKLPKGKNRELIAEITRKLLERTL
>NZ_LT599049.1|WP_003131089.1|1478015_1478546_+|Gx-transporter-family-protein
MNIKEYVYVSLLTAAAVVMGIIESSLPPFFAFAPGAKVGLANLVMIIAVFTLRWRQVWVMQILRLLITALFTGFSVFLYSFAGGILSLLAMYLMKQFGPKLVSMIGISTVGGFFHNFGQLAMASLLAKTTSVMLYLPWLAFFGILAGFAIGIAGNQLITRVKPIQELFIKESKQWT
>NZ_LT599049.1|WP_012897960.1|1477611_1478019_+|NusG-domain-II-containing-protein
MNFFKNTVNFFKSIKTKPLDFVIIFLLFIASFSTLFFFATGSKGAQAELRISGKVIKTFDLNKNQTWTYRDKDGDYNKIQVKNGEIAVVEANCKDQIDVQRGYISKTGETIVCLPHNLVIEVMSGQKDEQVDYKV
>NZ_LT599049.1|WP_017864588.1|1476599_1477541_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKQNAIPTKARKVRKAVIPAAGLGTRFLPATKAIAKEMLPIVDKPTIQFIVEEALKSGIEDILIVTGKAKRPIEDHFDSNIELEQNLLEKGKTELLKLVEETTDINLHFIRQSHPKGLGHAVLQAKAFVGNEPFVVMLGDDLMNITGNETPLTKDLINDYEKTHASTIAVMKVPHDDVDKYGVIDPNGEVSKGLYNVERFVEKPNVDEAPSDLAIIGRYLLTPEIFDVLETQVPGAGNEIQLTDAIERLNKTQRVFAHEFTGKRYDVGDKLGFVETTIEYGLEHPQIGANLKNYIIEKAKELSKDDSKNITKK
>NZ_LT599049.1|WP_021722825.1|1475531_1476557_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MNPQKIAVLGPGSWGTALSQVLNDNGHEVRIWGNNPEQMAEINEKHTNTRYFKDVVLDEKIKAFDRLDLALEDVDAILFVVPTKVTRLVAKQVAEVLKHKVHILHASKGLEQGTHERISTILEEEILAQLRGEIVVVSGPSHAEETIVRDITLISAASKDHDEAKYAQAIFSNDYFRLYTNTDVVGVETAGALKNIIAVGAGALHGLGFGDNAKAAIITRGLAEITRLGVAMGAEPLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGEKLADIEKNMGMVIEGVSTTKAAFELAQQLDIDMPITETIYKVLYENLDAKTGILDIMRRETRAENEFINNK
>NZ_LT599049.1|WP_021722820.1|1483819_1485184_-|MFS-transporter
MNKNNHFHLLGAVIATGILSFSGVLIETAMNVTFPTLINEFGLSTSKIQWVTTIYLLVIAITIPLSSYFNERFSARKLFLVANLIFLVGVLTNCFSPNFAMLLFGRLLQGVGTGIGLPLMFHLILTKAPLHKRGMMMGIGTLTTSIAPAIGPTYGGIISNSLDWRYIYIFLLPLVVISLVLGLACLPREGAKTPKKLALRPVIALSIMFFAFISALSAEHLMTFALLFIVGLVGAFLFVRFNRKESLIDLGILQNHRFVALIFSLLVYQALLLGLSFVLPSFIQVSAGFSSSVAGLFMFPGALIGAVLAPISGKVLDQIGARKPITTGLILAALGLALLFVFLPTKSLALLLVAHIVLMLGLGISYSNLMTCSLSTLATDQLSDGNALVNTLQQFIGAVATAVVATTLSIFQGLNGFKVGTSHGTSIILALFFILIIVSLIVSFPNLKKIRANH
>NZ_LT599049.1|WP_012897967.1|1485346_1486063_-|GntR-family-transcriptional-regulator
MNKYAKIRNDVRNKIISGKYKPGTLLPKESEMIMKYSASKLTIKKAMDELVNEGLIVKRRGSGTFVKGLSTEDIEKLKVVNQFQGSSAFFADKVVESRILVFEVVKSEPEIMERLGLSEVSDLYHVVRTRLIDGEPYVIESTYMPVDLIKNLTFEICSGSIYEYIEDELGLTIGSAHRRIEARKGTDEELTELGGEFGDPIVLVSQVGYLSDGRTFEFSTNVHRYDKYAFETVLMHKN
>NZ_LT599049.1|WP_068872821.1|1486134_1487562_-|glycoside-hydrolase-family-1-protein
MTKLIFPKEFWWGAATSGPQTEGRFKKKGANIFDYDFEKFPEHFWQGIGPDMASNFYNDFREDIKLMKKAGLNSVRTSIQWSRLIDDLEEGTVNQDAVDFYNAVIDEFIANGIRPVINLHHFDLPVDLLHKYGGWTNKHVITLYVKFAEQCFKLFSDRVSDWFTHNEPMVVVEGGYLYQFDYPDLVDGKLAVQVAYNLQLASSLAIQKFHEINQNPNGKIGIVLNLSPNYPASEDKKDIASAHIADLWQNQLFMDASVKGEFPKELVEILTKDKVIWQSTKEELAIIKNNKVDRLGVNYYHPNRAQKPYYSSDSLAVDWLPNKYFANYQMLGARMNVDKGWEIYPRALYEIAKNIQENYDNIPWFVSECGMGVSNEERYLNEEGQIDDDYRIQFIQEHLYWLHQAIEEGSSCFGFHLWTPIDCFSWRNSYRNRYGLISVNIHTQEKTLKKSAYYFKNLAEHSVLELSEEFFDKFN
>NZ_LT599049.1|WP_021722818.1|1487554_1488109_-|hypothetical-protein
MKVSGFIWFVQQVYMIIIASLMFWLNFLLGFVFLGTTFSFKRTFAYIEGTYYDKYHERTKEVKLKFEWSNLILLFTVGVFTLASHFPLSNLSTFLILVSLAYFVLTLIYIIFKTYYRLEKFTDVMQKLMGNWTMAIYSLMLIILAIFLTGFNRVWFLFFIPGLFCKMIDISFKHLDKKKVKIND
>NZ_LT599049.1|WP_012897970.1|1488105_1488942_-|carbohydrate-ABC-transporter-permease
MNKTNKKVFHIGDVLKYIPLVLAAIVAVLPLLVVFIGSFKSMTEFTNSGVLTLPKHFSIDNYTKAFTEGNMLTGFKNTVIIFVVSMVGQLLISSSFAYVMNRFEFRLKRLILALFTIAMLIPAITSQVAVFQLVNKLGLVGTRWSVIILYIGTNVIALYIFLQFLQEIPYSLDESALLDGASYFRIFWSIILPNLKAPIVTMVIISGVGVYNDFYNPYLYMPDPSLQVISTALFAFKGSSVVQWPVILAGVMIVIIPILIVFIVLQKYIYNGVTGAVK
>NZ_LT599049.1|WP_032946907.1|1488941_1489853_-|sugar-ABC-transporter-permease
MLEVLILSKLSQKAQKRLIIFSFTIVPIVLLLMFSYYPLVKMVQYSLTDWNGISPSSNYVGFANYEKVFSNPNYFGVFKTSLYYFLSSFPQLGLALLFATILSFKVKFANFWKGILFFPYLLNGVAIGFMFLYFYKTGGTLDSLLHLIGIHHLPLWLGNQSINNISLSFVSIWRYMGFNFLIFLGAIQSVDPEIYEAAEIDGANRWNQFRYIIIPAIRNILFLNIILSVSGSLSVFEVPYIMTGGANGTMTFVIQTVQTAFNYNQVGLASAMAVILLIIVVLVSAAQFILTQDRSDAKKKGGV
>NZ_LT599049.1|WP_021722815.1|1489926_1491246_-|extracellular-solute-binding-protein
MKKRYIFGSLAIMGLAALTLAACGSKTSSSGTGKNIKATITFVNQKTDMHSNGMWKKYIAEFNKEYPNITIKEQALNNYDQTEQTRMSSKNFGDVVAIPAAVAPKDYPNFFSSLGKTKDLEKKYTSLQDRTYKGEQYGLPSEVNANGFVVNWNVFKKASIDKWPTTTDEFIQDLKTIKAKLPDVTPLYTNYACGWALVDWDFQRSSVAGDPNFDLALAKTDKPFTEGQPMYTIYNTLYTAAKDGLINHDPTTDDWNTSVSQMAKNKVAVMMLATWAVPQVQSQMSSNKDAINVEPFPQTAPDGKTYMLVGGDYNWGVNKNSKNQEAAKDWVNWLVDKSDFAKDNGGMTAMKNQPYPTDLNDAKKNGVVFFEAGSTPADKADLFSNINNGSQVGIGTTQTVKQQIIDSGIGSSKKSFASIMDGLNTAWSQNVKQYNPDKK
>NZ_LT599049.1|WP_021722814.1|1491359_1492286_-|glycosidase-/-glucoside-hydrolase-family-113
MKAIKAASFGYYAKSGELNNDYAQWSMKTLKERTNINTIVLTIVAEQANAHATSINWQTMPPKDEEVKATIRYAQSLGLDVILKPMINCTDGTWRAYINFFDIDVVCEPKWSDWFAVYTEFQLYYAKIAQECEATMFVVGCELVSSDHREKEWRKLIDDVREIYKGLITYNCDKYQENHLTWWDAVDVISSSGYYPFDQWDKELRRIEKVIKKYDKPFFFCEAGAPSIDGGDLLPNDWTIKGEVNLEAQTRYYKGMLTACAKVDFVLGFGLWDWKAQVYSEDQARFDKDYAFYNKPAEKLIKDYYDKP
>NZ_LT599049.1|WP_021722813.1|1492385_1493324_+|acetylxylan-esterase
MTKINNWQDYQGSSLKPEDFDKFWDEKINLVSNHQFEFELIGKNLSSKVVNFYHLWFTAIDGAKIHAQLIVPKNLKEKYPAILQFHGYHCDSGDWVDKIGIVAEGNVVLALDCRGQGGLSQDNIQTMGMTMKGLIVRGIDEGYENLYYVRQFMDLITATKILSEFDFVDETNISAQGASQGGALAVACAALSPLIKKVTATYPFLSDYRKAYELGAEESAFEELPYWFQFKDPLHLKEDWFFNQLEYIDIQNLAPRIKAEVIWILGGKDTVVPPITQMAAYNKIQSKKSLYVLPEYGHEYLPKISDWLRENQ
>NZ_LT599049.1|WP_021722812.1|1493490_1494702_+|SPFH-domain-containing-protein
MGIIKAATGSLGGALADQWLEVIEPNEMSDQTVFTKGIKVRKDGKRGSNRKGTEDVITDGSIVHVYENMMMIFVDGGKIIDYTAEPGYYTVKNDTAPSLFNGDLRDSIQESFFRFKFGGTTPQKQEVYYVNLQEIKGIKFGTATPLQYFDNFYNAELFLRTHGTYSIKITDPLAFYANVIPKNADHVEIQEINDQYLAEFLTALNTSINQYSAQGDRVSFLTSKSMELSKYMASVLDEDWKQLRGMEIVSVAVASISYTDDSQKLINMRNQGAMLGDPSIREGFVQGAVARGLEAAGSNTGGATNAFMGMNMGGQNLASFSQTNQAQMQAQAENKADTWTCPECNTKNTGKFCSNCGQAKPSATPVMPELNMACNECGAVVNLVNGVPKFCPECGKPFVAKAL

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Crispr_ID: NZ_LT599049_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT599049_4

1997467-1997561

Orphan

Consensus_repeat	Method
TTTATTACTGACAGACTTGTCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT599049_4

>merge|NZ_LT599049|4|1997467-1997561|CRISPRCasFinder
TTTATTACTGACAGACTTGTCAGCTTTGCTGACAAATCCTTCATCCATTGATAAAAAGCTCAATTCAATCGCTTTTTACTGACAGACTTGTCAGC

>NZ_LT599049|4|4|1997467-1997561|CRISPRCasFinder
TTTATTACTGACAGACTTGTCAGC	TTTGCTGACAAATCCTTCATCCATTGATAAAAAGCTCAATTCAATCG
CTTTTTACTGACAGACTTGTCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT599049.1\|WP_021722249.1\|1998736_1999954_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_LT599049.1\|WP_068872835.1\|1993990_1994572_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379592
NZ_LT599049.1\|WP_003130548.1\|2006024_2006933_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_LT599049.1\|WP_021722243.1\|1991522_1991783_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_021722250.1\|1999953_2001210_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_LT599049.1\|WP_010905683.1\|1992564_1992783_-\|DUF739-family-protein	unknown	unknown	gnl\|CDD\|283090
NZ_LT599049.1\|WP_004255207.1\|1996033_1997446_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_LT599049.1\|WP_021722251.1\|2002292_2003624_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_LT599049.1\|WP_021722245.1\|1992951_1993494_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|237361
NZ_LT599049.1\|WP_021722248.1\|1997693_1998137_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NZ_LT599049.1\|WP_004255173.1\|2003626_2004328_-\|adaptor-protein-MecA	unknown	unknown	gnl\|CDD\|227199
NZ_LT599049.1\|WP_021722252.1\|2005191_2005878_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LT599049.1\|WP_004255171.1\|2004457_2005192_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_LT599049.1\|WP_021722247.1\|1994691_1995831_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_LT599049.1\|WP_010906139.1\|1998252_1998735_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
NZ_LT599049.1\|WP_021722244.1\|1991796_1992534_-\|ORF6C-domain-containing-protein	unknown	unknown	gnl\|CDD\|371131
NZ_LT599049.1\|WP_032946657.1\|1990788_1991223_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_021722246.1\|1993490_1993928_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|320684
NZ_LT599049.1\|WP_155242617.1\|1991212_1991365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_004255181.1\|2001347_2002118_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473

Protein	Function_ID	Function_description	E-value
NZ_LT599049.1\|WP_068872835.1\|1993990_1994572_+\|hypothetical-protein	gnl\|CDD\|379592	pfam14387, DUF4418, Domain of unknown function (DUF4418). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 132 and 150 amino acids in length.	0.00201567
NZ_LT599049.1\|WP_003130548.1\|2006024_2006933_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.39571e-70
NZ_LT599049.1\|WP_021722249.1\|1998736_1999954_-\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_LT599049.1\|WP_021722250.1\|1999953_2001210_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	1.54897e-131
NZ_LT599049.1\|WP_010905683.1\|1992564_1992783_-\|DUF739-family-protein	gnl\|CDD\|283090	pfam05339, DUF739, Protein of unknown function (DUF739). This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.	7.83956e-42
NZ_LT599049.1\|WP_004255207.1\|1996033_1997446_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_LT599049.1\|WP_021722251.1\|2002292_2003624_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	2.04808e-85
NZ_LT599049.1\|WP_021722245.1\|1992951_1993494_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|237361	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional.	9.74824e-16
NZ_LT599049.1\|WP_021722248.1\|1997693_1998137_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.02657e-66
NZ_LT599049.1\|WP_004255173.1\|2003626_2004328_-\|adaptor-protein-MecA	gnl\|CDD\|227199	COG4862, MecA, Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion].	3.81196e-86
NZ_LT599049.1\|WP_021722252.1\|2005191_2005878_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.27952e-76
NZ_LT599049.1\|WP_004255171.1\|2004457_2005192_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.02808e-157
NZ_LT599049.1\|WP_021722247.1\|1994691_1995831_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.63017e-34
NZ_LT599049.1\|WP_010906139.1\|1998252_1998735_-\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.28577e-22
NZ_LT599049.1\|WP_021722244.1\|1991796_1992534_-\|ORF6C-domain-containing-protein	gnl\|CDD\|371131	pfam10552, ORF6C, ORF6C domain. This domain was identified by Iyer and colleagues.	2.44004e-38
NZ_LT599049.1\|WP_021722246.1\|1993490_1993928_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	0.00106898
NZ_LT599049.1\|WP_004255181.1\|2001347_2002118_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.57723e-148

>NZ_LT599049.1|WP_004255207.1|1996033_1997446_-|Fe-S-cluster-assembly-protein-SufB
MTENSTQEVVKDLEEYKFGFHDNAELEFTTGLGLTEEVIREISETKNEPEWMLEFRLKSFEAFKKLDMPKWGPDLSGIDFNDIVYYQKPSAKAARSWEDVPQEIKDTFEKIGIPEAERSYLAGASAQYESEVVYHNMKDEFEKLGIIFTDTDSGLRDYPEIFKKYFSKLVPPTDNKLAALNSAVWSGGSFVYVPKGVKCEIPIQAYFRINNEKSGQFERTLIIVEEGASIQYVEGCTAPTYSASSLHAAVVEIFVEEGGYMRYSTIQNWSDNVYNLVTKRAAAEKNATVEWIDGNLGSKVSMKYPAVHLNGPGARGTMLSIAFAGANQNQDTGAKMIHNAPNTSSSIISKSIAKNGGAVNYRGQVTFGKNSKKSASHIECDTILMDDLSKSDTVPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLTEKEATDMIVMGFIEPFTKELPMEYAVELNRLISYSMEGSIG
>NZ_LT599049.1|WP_021722247.1|1994691_1995831_+|site-specific-integrase
MWIEDLANGKYKYFERYRDPLTEKLKKVSVTLDKKTPRAQKTAIKELTEKINKILSHNEGSDITFVDLYDEYYKNWSPTVKASSLRGTTANDNRILEKIGKNTKARNVNRRLIQDLVNEMMDEGYAYSYYNGFKKRFHSILDFGVRMGYLEVNEASFVKAPKKIKTFNEVQEKRDSYLELSDIKKILSVLRITSRVEHIANFVEFMAYTGARYGETAALTIDEIDLENGTVTINGTYDRALKIKTTPKTEFSYRTITISENIKNIIQEQLELLEIHRSLKGNDFNKDNYIFFTVNGAAVDLDTLNVVVRRAAEKVGITKHITSHIFRHSHIALLAELGIPLSAAMDRVGHTDYKTTLNIYSHVTKSVKIDIVKKLNEIK
>NZ_LT599049.1|WP_068872835.1|1993990_1994572_+|hypothetical-protein
MEKKKESKALAIIALIIGILALVLSWVPIVNNFAAVLAIVSAILGLIAIIINRKNKKTLSIVSFVISILAFIIVLATQSMYSSAIDSVGKKVNSDISSSQKKADESFKWSKADYDALVVGDTVTGAGGTNYDGLEAKFGKPSNSSESSAGDYTIKNISWDNMGSSNYKSVSLAFTKQADGSWLLSNKSQSGLE
>NZ_LT599049.1|WP_021722246.1|1993490_1993928_+|ImmA/IrrE-family-metallo-endopeptidase
MSKLRELSRELGAEIIYFIPSENDVALIDDIKGLYLPEYDIIYIRDDLTIIEQENVILHELGHCYCGHTHYNCHSKMFGSKQEAQADRFMVVHRFNEWLSKWDFAPEPNEINTSQFMDAYELNNKLKWICESVIEEYTAEYHEAI
>NZ_LT599049.1|WP_021722245.1|1992951_1993494_+|helix-turn-helix-domain-containing-protein
MKTDTSNRLKQIMAERNLKQVDILNLSIPFQKKFGIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLMGFDVPMVESSKIENDSETIEKTVTVMKKLEEPRQKVVLDTANIQLKEQEEQNKVKQIEDYRLTDEYLEEQISKASAYGGGQLNDNDKEFFKRLLKNTLKEKIDKGDL
>NZ_LT599049.1|WP_010905683.1|1992564_1992783_-|DUF739-family-protein
MSYDYSSLLGKITEKCGTQYNFAIAMGLSERTVSLKLNDKVTWKDDEILKAVHVLELNPQDIPKYFFNAKVH
>NZ_LT599049.1|WP_021722244.1|1991796_1992534_-|ORF6C-domain-containing-protein
MNELQITELNGQRVLTTQQIADGYGTTNKVISNNFNNNRTRFEEGKHFVLLVGEYLKEFLHSQNLGTQNKIRKLYLWTEKGALLHAKSLGTDEAWDMYDILVDTYFKVQEEKQFPQTPEQQIVLLAQGNVNLNKKVEQIENSVLDLADRFGLPSNKAKVLQKKVASKVYMFTGGKYSNAHKKLGAKVFREFYKDLNNRFDVVKYSDIPLSRYDEALEYLDMWQPSFNTTLEIRGLNSQTSFVFEE
>NZ_LT599049.1|WP_021722243.1|1991522_1991783_-|hypothetical-protein
MPYAKITYLPVENAEDAEWCDKKHLMEVWQGLSKGTLTAWLTEMRDRSEFKKGVLNPTHGLVFINKEIFKEFVEWKEATRYKSYKK
>NZ_LT599049.1|WP_155242617.1|1991212_1991365_-|hypothetical-protein
MENVKIKVEIEAEGLEELKNLSQKLTEQAAEIADTIHKINSIQLELKLNQ
>NZ_LT599049.1|WP_032946657.1|1990788_1991223_+|hypothetical-protein
MKFSQVQDLEYLFKRLKINKNIVFYLNGRLATAKFINYDEHGSPIKFYTRGTWVGYHKEYRFDDIYNSYFDHFVASTISYDNPSWVNTPLFALQILSNFVQEREAIKSEFKHILYNVRFLDSEESYDFYLLDNDYDFEILSLID
>NZ_LT599049.1|WP_021722248.1|1997693_1998137_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MALSKLDNLYRAVILDHSSNPRHAGELQTGCMVDLNNPTCGDVIRLTVEFENDVISNIAFSGHGCTISTASASMMTVAVLGKTKEEAKELATIFSAMVTGETDERQEKLGDAQFLAGVSKFPARVKCSTLAWNALKKPLMLVKHKKQ
>NZ_LT599049.1|WP_010906139.1|1998252_1998735_-|hypothetical-protein
MLNWVASLPLWLATTFLFVVVFFRAQCTFWLGKLSYHGILKTKWGKKLEKNSETSAGILAIQKMGWPIIPLSFLTVGFQTAVQFGAGLTNWSWYKYTLAAIPGYLAWGFIYASGGLSLFRSLVQGSIGLLILFIIIILAVVIAANLVLRYIRKNGIKTDD
>NZ_LT599049.1|WP_021722249.1|1998736_1999954_-|cysteine-desulfurase
MLEGIKKDFPVLNQIVNDEPLVYLDNAATTQKPLKVLAAIKDYYENDNANVHRGVHTLAERATEKYEAAREKVRQFINAKSTKEVLFTRGTTTSINWVAQFAGQILKKGDEIVISIMEHHSNIVPWQEVAKKTGAILKFVYLKDGQLDMDDLRKKITNQTKFVSIAHVSNVLGTINPVEEITKIAHEHGAYMVVDGAQSTPHMAIDLQKMDVDFFAFSGHKMMGPTGIGVLYGKEELLNQFEPVEFGGEMIDFVYESHSTWTELPWKFEAGTPNIAGAIALGAAIDYIQELGIDQIHQHEIELIDYLMPKLQEIEGLKIYGPKDNVKRGGLIAFNIEGLHPHDVATALDMEGVAVRAGHHCAQPLLNYLETPATARASFYLYNTKADCDKLVEALKKTKEFFNLD
>NZ_LT599049.1|WP_021722250.1|1999953_2001210_-|Fe-S-cluster-assembly-protein-SufD
MNQEILNFSQMHAEPAWLSDLRQKAALEFENLELPNIERVKINRWGLDHLTISENEEIGSVPTFTEIPNHPLLVQVGSQTVMEQMTPNLAEQGVIFTDFNSALTEIPELIEENFGSVVPFNESRLTAANTATFNSGLVLYVPDGVEVLEPIESILMQEGSSEVPFNKRILIIVGKNAKVDYLERLETSGEQSSKVKANIVVEVIAKAGAQVKFAAIDRLGENVTASVVRRGLIGDNATVDWSVGVMNDGNVVADFDSDLKGNGSHSQIKVVGISTGHQTQGIDTRVTNFGLNSVGHILQNGVILDKGTLTFNAIGHIIKGAKNADAQQSSHVLMLSDKGRGDANPILLIDENEVTAGHAASVGQVDEEDLFYLQSRGLDEETAKRLVIRGFLGSVVSEIPVKSVQAEFIETIERKLGM
>NZ_LT599049.1|WP_004255181.1|2001347_2002118_-|Fe-S-cluster-assembly-ATPase-SufC
MATLEIKNLHVAIEDKEILKGVNLVINTNEIHAIMGPNGTGKSTLSAAIMGNPNYSVTQGEVLFDGQNVLEMSVDERARLGLFLAMQYPSEIPGITNAEFLRAAMNAKRAEDDKVSVMEFIKKLDKNMEVLSMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFAILDEIDSGLDIDALKVVAKGVNSMRGEKFGALIITHYQRLLDYITPDVVHIMMDGRVVKTGGAELAKRLETEGYVNIAEELGLEYKEEV
>NZ_LT599049.1|WP_021722251.1|2002292_2003624_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MVDTLKEIPFALKFLIVIIITFGISVILTPIMTFVSKAIGAVDKPNERRVNKKPMPSAGGLVIFIAFAIATLFILPHIVHNQPPIHSQPPVHGASHQPIQLVSYFSYIWPFIVGAGIVVLTGLIDDIKEISPKMKLLGLTVAASFIWFFTNARFDNLKIPFGGPLLIFPAWLSFIFTVFWILAITNAINLIDGLDGLASGVSIISLTTMGIVSYFFLPSPNVFLPITIFIMVAAIMGFFPYNYHPAIIYLGDTGALFLGFIISVASLQGLKNATAVAVLTPLLILGVPITDTIMAMVRRKLNRQSIATADKRHLHHRLMALGFTHRGAVLVIYGIASIFAFISILLQFSSRIGGILLVIACLFGLEIFIELVGILGENRQPVLKALKFVGNSSYRDKVLHSDEDADIDENEEDIENHSMIDEEIDEPTQEFPIQNYRRSRNKK
>NZ_LT599049.1|WP_004255173.1|2003626_2004328_-|adaptor-protein-MecA
MKYEDINENTIKITLSFDDLTDYDIKLSDFFGNQEVIEQFFYELVDELGLENRFGNVGMLTFQIQPFPQGVHMIVHEEAMLGEGGEIPDDPEEFEELMTGFYNKLNEIGADMARERGITDFKPGLGLPGTKKDEAEQEPDFIYYSIRYEDIMSVLTGIKNVKFADEESEFYRYDGNFYLVVLDNQKEKGKMHVESTRSRMMEYGEATKMSREFLQEYGECLIATRALDVLRKI
>NZ_LT599049.1|WP_004255171.1|2004457_2005192_-|amino-acid-ABC-transporter-ATP-binding-protein
MNEYLIEIKNLHKYFGKNEVLKGLDIQIKKGEVVVMIGPSGSGKSTFLRTMNLLEKPTDGQVYFEGVNIADKSVDVFKHREKMGMVFQQFNLFPNMTVLENLCLAPVKTGKMTKEEAKKTAEDLLQRVGLSDKAEAYPQALSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLAVMQELAKEGMTMVVVTHEMGFAKTVADRVLFMADGTIVEQGKPAQVFDSPKEKRTQDFLAKVL
>NZ_LT599049.1|WP_021722252.1|2005191_2005878_-|amino-acid-ABC-transporter-permease
MNFDFLPKYLPYFNDGMIVTILISAFVVLIGTLLGIVTALAKISKIAPLRWLANIYIEIFRGTPMLVQIMLGFGLMGSLSLPTFQVGILQQDLGRLIPGIIVISLNSGAYMAEIVRAGIEAVPLGQKEAAYSLGIRPRQTMATVILPQALRNILPAVGNEFVTIIKDSSLLYTIGVMEVFNGAQTVANLTYQTISPMLFVALYYFVVTFVVSRLLVLFEKKLGKGYAK
>NZ_LT599049.1|WP_003130548.1|2006024_2006933_-|diacylglycerol-kinase-family-lipid-kinase
MTYYLLANPNSGAGKGARTLETLIPYLEKNNYEYRLFKTKAAGEEGALVRQILDLKNPDDHLVIIGGDGTISLVINELPEEEAFSYIPSGSGNDFARSLKLKLDPIESFEAARRGINHEIFIMNYQSKGLSGYALNNIGIGLDATIVKSANEGKLKQVLNKLKLGSFSYILTALHVLITKKPFPALIEVENQEISLENAFLMTFTKHPYFGGGVKISPEATNENADIHLVEYNKHHLLRTFSLIPSVLRGMHLKHPLFLHRVSPQFSVELAESQPVQIDGEIHELVAADRLSISTERRMIIY

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Click the colored protein region to show detailed information

Crispr_ID: NZ_LT599049_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT599049_5

2047940-2048129

Orphan

Consensus_repeat	Method
GAGGAAGCATTTTATCGGTGAATAAAGGAACTGGCAGTGAAGCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT599049_5

>merge|NZ_LT599049|5|2047940-2048129|CRISPRCasFinder
GAGGAAGCATTTTATCGGTGAACAAAGGAACTGGCAGTGAAGCTGACAGTTCTATCATTAATAATGCGACCGGAGGAAGCATTTTATCGGTGAATAAAGGAACTGGCAGTGAAGCTGACAGTTCTATCATTAATAATGCGACCAGAGGAAGCATTTTATCGGTGAATAAAGGAACTGACAGTGAAGCTGA

>NZ_LT599049|5|5|2047940-2048129|CRISPRCasFinder
GAGGAAGCATTTTATCGGTGAACAAAGGAACTGGCAGTGAAGCTGA	CAGTTCTATCATTAATAATGCGACCGGAGGAAGCATTTTATCGGTGAATAAAGGAACTGGCAGTGAAGCTGACAGTTCTATCATTAATAATGCGACCA
GAGGAAGCATTTTATCGGTGAATAAAGGAACTGACAGTGAAGCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT599049.1\|WP_012898388.1\|2043236_2043407_-\|DUF1655-domain-containing-protein	unknown	unknown	gnl\|CDD\|285151
NZ_LT599049.1\|WP_012898400.1\|2056163_2056511_-\|nucleoside-triphosphate-pyrophosphohydrolase-family-protein	unknown	unknown	gnl\|CDD\|212148
NZ_LT599049.1\|WP_021722666.1\|2040858_2042556_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_017864937.1\|2052750_2054100_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_LT599049.1\|WP_021722659.1\|2051194_2051833_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_021722665.1\|2042565_2042835_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_021722658.1\|2054582_2055500_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_LT599049.1\|WP_010906152.1\|2052422_2052737_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|225383
NZ_LT599049.1\|WP_021722657.1\|2055531_2056167_-\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|224480
NZ_LT599049.1\|WP_068872836.1\|2047246_2047819_-\|uracil-DNA-glycosylase-family-protein	unknown	unknown	gnl\|CDD\|381683
NZ_LT599049.1\|WP_021722656.1\|2056535_2056991_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_012898383.1\|2040091_2040298_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_003130300.1\|2057180_2057720_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_003130309.1\|2051901_2052426_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_LT599049.1\|WP_012898389.1\|2043471_2044164_-\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226172
NZ_LT599049.1\|WP_012898393.1\|2046717_2047161_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_LT599049.1\|WP_012898387.1\|2042980_2043235_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_012898390.1\|2044258_2044453_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599049.1\|WP_021722660.1\|2048293_2051116_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_LT599049.1\|WP_012898391.1\|2044610_2045297_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NZ_LT599049.1\|WP_012898388.1\|2043236_2043407_-\|DUF1655-domain-containing-protein	gnl\|CDD\|285151	pfam07868, DUF1655, Protein of unknown function (DUF1655). This protein is found in some prophages found in Lactobacillales lactis.	5.92967e-06
NZ_LT599049.1\|WP_012898400.1\|2056163_2056511_-\|nucleoside-triphosphate-pyrophosphohydrolase-family-protein	gnl\|CDD\|212148	cd11541, NTP-PPase_u4, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from bacteria and archaea. This family corresponds to a group of uncharacterized hypothetical proteins from bacteria, showing a high sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, members in this family consist of a single MazG-like domain that contains a well conserved divalent ion-binding motif EXX[E/D].	2.65448e-31
NZ_LT599049.1\|WP_012898389.1\|2043471_2044164_-\|Rha-family-transcriptional-regulator	gnl\|CDD\|226172	COG3646, COG3646, Uncharacterized phage-encoded protein [Function unknown].	4.93322e-50
NZ_LT599049.1\|WP_021722658.1\|2054582_2055500_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.61686e-39
NZ_LT599049.1\|WP_010906152.1\|2052422_2052737_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|225383	COG2827, COG2827, Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair].	6.92307e-37
NZ_LT599049.1\|WP_021722657.1\|2055531_2056167_-\|thiamine-diphosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	1.32448e-70
NZ_LT599049.1\|WP_068872836.1\|2047246_2047819_-\|uracil-DNA-glycosylase-family-protein	gnl\|CDD\|381683	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil may arise from mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations; thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other. UDG family 1 is the most efficient uracil-DNA glycosylase (UDG, also known as UNG) and shows a specificity for uracil in DNA. UDG family 2 includes thymine DNA glycosylase which removes uracil and thymine from G:U and G:T mismatches, and mismatch-specific uracil DNA glycosylase (MUG) which in Escherichia coli is highly specific to G:U mismatches but also repairs G:T mismatches at high enzyme concentration. UDG family 3 includes Human SMUG1 which can remove uracil and its oxidized pyrimidine derivatives from, single-stranded DNA and double-stranded DNA with a preference for single-stranded DNA. Pedobacter heparinus SMUG2, which is UDG family 3 SMUG1-like, displays catalytic activities towards DNA containing uracil or hypoxanthine/xanthine. UDG family 4 includes Thermotoga maritima TTUDGA, a robust UDG which like family 1, acts on double-stranded and single-stranded uracil-containing DNA. UDG family 5 (UDGb) includes Thermus thermophilus HB8 TTUDGB which acts on double-stranded uracil-containing DNA; it is a hypoxanthine DNA glycosylase acting on double-stranded hypoxanthine-containing DNA except for the C/I base pair, as well as a xanthine DNA glycosylase which acts on both double-stranded and single-stranded xanthine-containing DNA. UDG family 6 hypoxanthine-DNA glycosylase lacks any detectable UDG activity; it excises hypoxanthine. Other UDG families include one represented by Bradyrhizobium diazoefficiens Blr0248 which prefers single-stranded DNA and removes uracil, 5-hydroxymethyl-uracil or xanthine from it.	4.87665e-96
NZ_LT599049.1\|WP_003130309.1\|2051901_2052426_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	6.74229e-38
NZ_LT599049.1\|WP_017864937.1\|2052750_2054100_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	1.21396e-140
NZ_LT599049.1\|WP_012898393.1\|2046717_2047161_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	2.38168e-16
NZ_LT599049.1\|WP_021722660.1\|2048293_2051116_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_LT599049.1\|WP_012898391.1\|2044610_2045297_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.25943e-13

>NZ_LT599049.1|WP_068872836.1|2047246_2047819_-|uracil-DNA-glycosylase-family-protein
MDKFKEIFEAIKADPRNKKYTKDGIEPLYSVHKEAKICIIGQAPGIRAQESRLFWNDPSGDRLRDWLGIDRTTFYESNKISILPLDFYFPGKGKSGDLPPRAGFAQKWHKALLEEMPEIELFILVGSYAIKYYLNLKSSAKTTEVIRDFEAYLPKYFPLVHPSPRNNIWLAKNPWFEPELLPELKKELLN
>NZ_LT599049.1|WP_012898393.1|2046717_2047161_+|GNAT-family-N-acetyltransferase
MEIRVTRDTMSDIYFDALRIRNQVFVKEQGVPYELEVGNALEEASSVHFVLYDDGLAKGTVRLLADLDKKTALIQRMAILKEARGHGYATLLINRLIEFAKENRLNKLELHAQLSAKGLYSKHGFNEVGQIFEEAGIQHIQMERTIH
>NZ_LT599049.1|WP_012898391.1|2044610_2045297_+|helix-turn-helix-transcriptional-regulator
MANEVYKALNRIKELRIEKGVTQSTVAKAIGISQGMLTNYETGKRSPRDFKVWQDLADYFDVTTSYIMGTSDFRTYQDEINEIQTSAKENYGVEVPAEIIKDYKGNPVSTTYNTLALRTEMAKKLLPELDKMISTIDSYLYSSPTIDFDDKEKADYFYSDEFKLANAQIDQLLIWKHRKKVFQLKKQLLEKQIQNPENYFALEDGITKAELKKRWQDYRRKDSNENEL
>NZ_LT599049.1|WP_012898390.1|2044258_2044453_-|hypothetical-protein
MYLTSEIKTALRKKRGVLDLTKGEAANQLGINRLTYGRLESPTRNEKVRQSTYERITEWLAKDY
>NZ_LT599049.1|WP_012898389.1|2043471_2044164_-|Rha-family-transcriptional-regulator
MKDLAFLTSPDMSKAEVVTNHIVIAEYAGIERTSLRLLINKHKKDFEQFGKLIFEISTLPDSRGQKVKIYQLNRNQAMLMITYLDNTEVVRNFKIALVKRFDEMEKELYARKIARAVEKPKGITLHQAISEWNHYSRHGNTWHTIIRSLLATTVTGLTKKQIQARDTDWRKEKTLLDLLDSVEMERYKMLESIAIAMIEAGSDYEPLKVAIKATMTTKKSTPTKVETFKL
>NZ_LT599049.1|WP_012898388.1|2043236_2043407_-|DUF1655-domain-containing-protein
MTEFITIDEAKLLFTECLARARHHIEVDDVTDKLFDGKSVATFTFMGNGYQVELEA
>NZ_LT599049.1|WP_012898387.1|2042980_2043235_-|hypothetical-protein
MQSSTFKIEDLEKARTFENKHFLILSVKMNSEIGHQVFLKSVKNNKTVIIFNQNKAPLCIKVSHEFAQSWKLKKQVETKKRDKV
>NZ_LT599049.1|WP_021722665.1|2042565_2042835_-|hypothetical-protein
MSILSFEAEQELTQSVLNRVDKLVEARIEQSRLFPYVQQDELLKELNISTTYLAKLRAHGLKQVILEDGDRTVWYKKSQLESLMDSLAE
>NZ_LT599049.1|WP_021722666.1|2040858_2042556_-|hypothetical-protein
MTEVKTDYGDLEKQRKAWERLENNLKKVINLPWEKFGNIDGAKIPQSLDLVNILHRDIYEYPYLSVKSTGENKRIKRPSLHLNNGQNTVSIFYGGVNKKAEKTDDGEDKEVVTLKSSKSIPRFVNVILDYLFGKLALHNGYLYDISTSQFKRLSEMDIAHEYKLGKRSDFTASEVVEIISFIDEQISLKPLKEIKTSIIACHDFQLDLHQKKILKDCSIKDNECYFKVFDCQLSDVIEMSILNANYLGMVIDDADSLHNAQLQPIYQMLVACREITKTRFFVSKSGTRTGKGLRHKVISSIFDTKHVNLDELSNKATAAMAWAGFDGGEMLLVTESGEIGKSLERYLKILATESTYRGRGIGQNYADINFIGVLSIDSNEKVLFSSEMNSRAVNIAFKNRPKGETDSDRESIFSPYWEAFTEQRVSETSREATALAGVAALYSSFIYWRQNKFKFNFKQVEMDNFSSDHFDFDDVQIYIIEEHIKGNKTIIKTDEVQKLLKETYYGAGSPKRRKEALDIIGYFETTRKFPTRDGNRKTFRVIAIGNPRRASKAVTVFLESMYEPP
>NZ_LT599049.1|WP_012898383.1|2040091_2040298_-|hypothetical-protein
MSDKVIMVYTVNDASAFVFNQTLDNMKVIGKWQDNPDQLFRLGTTVFNGSHVVAIKVAKRGPLGTVPE
>NZ_LT599049.1|WP_021722660.1|2048293_2051116_-|excinuclease-ABC-subunit-UvrA
MPQDKIVIHGAREHNLKNIDVEIPRDKLVVVTGVSGSGKSSLAFETLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCVNGHGKISAQSVEEIVEQILELPEKTRLQILAPVVRTKKGTHVKMFERIQKDGYVRVRVDGEVYDISEVPELDKNKKHNIEIVIDRIVVKEGIRSRLFDSVEAALHQAEGYVIVDKMDGSELLFSEFYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEPDVDLLIPDTSKTLREGAIIYWYGKASTYYPALLEQAMEEFGIDLDRPWEKLSEKEQQIVLYGNGDKLFHFLHEGDFGLRDQDMTFVGVIPNLWRRYRSGMSESAREMARSYMTELTCTTCHGYRLNDQALSVKVGEKNIAEFSILSIGDTLDYVKSLVLSANNEIIAKPILKEIKDRLTFLKNVGLDYLTLSRSSGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLQKMRDLGNTLIVVEHDEDTMMAADWLIDVGPGAGDLGGEIIASGTPKQVMKNKKSLTGQYLSGKRAIPVPEKRRAIDKKKMVKITGASENNLQNLDVEFPMGVMTAVTGVSGSGKSTLVNSILKKSLAQKLNHNSEKPGKHKKITGYEGIERLIDIDQSPIGRTPRSNPATYTSVFDDIRDLFANTNEAKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNISEVLDMRVSDGLEFFRHIPKIERKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLASELQKRSNGKAFYILDEPTTGLHSEDIATLIQVLDRLVEQGNTIVVIEHNLDVIKTADYIIDLGPEGGAGGGTILAKGRPEEVAKVADSYTGQYLKAKLEK
>NZ_LT599049.1|WP_021722659.1|2051194_2051833_-|hypothetical-protein
MITSLTILSSLAIIVTAVIAFAEYQAGKRRHSTTLSIEMLHKQKDDFIKWFYDYLHISQVLMRVTIQLNMDRLEQRHFESTNDSSNQRRIIRINENTMSRDRNAADLNYQMMLLNLVIDDRKPYFENTQIKVRSNFETLMYDINEFTRKIHIEYDEKMKETDDAGCRSIMNEARKMARNTMETIEKSNHEMGEQVKHDIQALEDEVEHYFKK
>NZ_LT599049.1|WP_003130309.1|2051901_2052426_+|histidine-phosphatase-family-protein
MKLYLVRHGETQNNQQNLLTGWLNSPLTGTGIQQSEILADKLSSVKFDLILSSDLQGAKETAMIISNKIGALLLFEPLLRERGLGKLENQTKENRDWAQLNIENEENLTLGIESLASIHERAKIFLEKLPQLFPSAQNILIVSHNGMINQFQKIWEPTHEFTPFEFLTILEKNL
>NZ_LT599049.1|WP_010906152.1|2052422_2052737_+|GIY-YIG-nuclease-family-protein
MNQYFTYILQCSDKTLYCGYTTDLEKRLATHNSGKGAKYTKTRLPVKLLASVDFDNKNDAMSCEWWFKHKLVRKQKLSLIKNDLIKEKFIEYLELKQKKNIHLK
>NZ_LT599049.1|WP_017864937.1|2052750_2054100_-|amino-acid-permease
MENSTGLKSSLKTRHIVMLSLGGAIGSGLFLGSGKVIAQAGPSVLLSYILAGLTLYVVMYGVGKMVIHQDEHKAGMAGVVAPFIGDHWAHFADWVYWATWMAVLIAEEAGVSTFLAMLIPGVPLWVFALIVAVLGTAINLWSVRAFAETEYWLAFIKVAVILILIALGIYLLVINDAHLGFVADTAQKVSTKSTAPSFAPNGFSGFLTSLLVVIFSFGGSELAAITVAETENPKVAIPRAIRGVLIRIISFYVIPIFLFLHLLPWSEVSNPDAASPFATIFARVGIPHADKIVLVIIVIAIFSAVNSAIYATSRSLYSRIQGSNSYVGQRLGKLSKNQVPTNAILVSSFVLFIGVLLSAILGDGFWQFVAGSISFTISIVWILLLVAALVLYFKHKEVTNWFVKLATLVVLIALTIIFIMQIVTNPWTLSVFALVICLLSYFTYRKKKA
>NZ_LT599049.1|WP_021722658.1|2054582_2055500_-|Gfo/Idh/MocA-family-oxidoreductase
MIIGVIGATSNIASKAYLPVYAKMQADHRFILYSRQWEKAEEVRKHYKFEYATEDLSALETVDLVIIHAATSQHFELAKRYLSAGVPVLMDKPVSEKLAEVKELQKIADQNNTLFVVAFNRRFAPQTAKLKALPDKNMVKVSKNLANSASEKITFSMYDIFIHPLDTLIYLLDDEILEVNYSLKKNQDGQLTRAIVMLETATTSGIATMNLEAGAFTEEFTVESSRESLRLSELCELEKFTGIDRQKFGISGWQSATYNRGFDEIISAMVLAVEKFDGQNRQELLTELRQENILKSHEIIDQMLK
>NZ_LT599049.1|WP_021722657.1|2055531_2056167_-|thiamine-diphosphokinase
MKILIVAGLPDFIPNESFDKYIGVDRGSLFLVEKGYQLALAIGDFDSVSKIELEKISVSTDRLIKLPAEKDLTDLEAALDFVLEYFADAEIVIAGALGGRLDHLLTNAYLATRPKYQALAPKMTLVDRQNLMTYLLPGQHLLKRKLTYQYVGFVQVETKDSLAIEEAKYPLKVEDNFSQIYASNEFISDQMKVSFNQGMVIVIYSGDSHKK
>NZ_LT599049.1|WP_012898400.1|2056163_2056511_-|nucleoside-triphosphate-pyrophosphohydrolase-family-protein
MDLDAYQKAIIKFDLNEKIESQNEVDFAFVDKVLGLSGEAGEVADKVKKVIRDQEGKLSVNDKKAIGQELGDILWYVATSARYLGISLEQIASENIEKLESRLSRGKISGSGDER
>NZ_LT599049.1|WP_021722656.1|2056535_2056991_-|hypothetical-protein
MKNKEEPRMKWSDDEYEAMIDLATRQLAERMAERALMTYEIYKYDYLDSQFVADFIAEFVISAYRSYLIKPENLDEEVMLLLFVNMAYENMRGLPDEVAQYHRLFRQLCDLYYEQGCLRHALIDEADYQEMVLAILADIFMEVKMRKKFKK
>NZ_LT599049.1|WP_003130300.1|2057180_2057720_+|hypothetical-protein
MKKILITTTLALALLSLGACSKKSDASHKSSSSSTSSFSFPSSTSSSSKVSSSSKVETPTGNIDSSFQKAVDATQPTVATMKETYKDTYSDITATAEAPQTIVYTYTYRNQITPTATKEAVAKQLATATASEFNQFSAVFPNFKERYIYLNSDKSELYNILVTKEDVTAAQASSASSSK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

433972 : 446100

Streptococcus_phage(40.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003131595.1\|433972_434290_+	thioredoxin family protein	A0A0K2FIM3	Achromobacter_phage	4.5e-05	30.4
WP_003131594.1\|434375_435002_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_021721944.1\|435163_436504_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010905314.1\|436593_436983_+	single-stranded DNA-binding protein	A0A0K0MWE1	Streptococcus_phage	1.4e-24	45.0
WP_003131589.1\|437102_437387_+	co-chaperone GroES	A0A221S386	uncultured_virus	3.1e-13	44.1
WP_021721943.1\|437474_439103_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.7e-156	57.0
WP_003131583.1\|439148_439961_-	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	3.1e-34	38.1
WP_012897229.1\|440129_441572_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.4e-32	33.0
WP_003131580.1\|441564_442266_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-42	39.7
WP_012897230.1\|442443_443079_+	dTMP kinase	M1PSC7	Streptococcus_phage	5.4e-74	65.0
WP_021721941.1\|443211_444072_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	1.9e-66	44.8
WP_017864130.1\|444123_444906_+	stage 0 sporulation family protein	NA	NA	NA	NA
WP_021721940.1\|444898_445225_+	DNA replication initiation control protein YabA	NA	NA	NA	NA
WP_003131568.1\|445224_446100_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	8.7e-99	65.4

DBSCAN-SWA_2

919896 : 1000720

Erysipelothrix_phage(52.0%)

protease,tail,capsid,integrase,terminase,holin,portal,head

attL 911891:911906|attR 926873:926888

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
911891:911906	attL	NA	NA	NA	NA
WP_021722042.1\|919896_920871_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	2.5e-30	28.3
WP_021722044.1\|921234_921633_+	hypothetical protein	A0A1W6JN52	Lactococcus_phage	6.1e-52	97.7
WP_155242616.1\|922054_923179_+	hypothetical protein	NA	NA	NA	NA
WP_021722047.1\|923399_923486_+	hypothetical protein	NA	NA	NA	NA
WP_021722048.1\|923505_923943_+	HNH endonuclease	S6CQN3	Streptococcus_phage	6.4e-18	43.0
WP_021722050.1\|924096_924936_-	hypothetical protein	NA	NA	NA	NA
WP_021722053.1\|926659_927514_+	Ltp family lipoprotein	A0A097BY58	Enterococcus_phage	2.4e-08	42.4
926873:926888	attR	NA	NA	NA	NA
WP_021722055.1\|928468_929566_+	TFIIB-type zinc finger domain-containing protein	NA	NA	NA	NA
WP_021722272.1\|932360_933008_+	hypothetical protein	NA	NA	NA	NA
WP_021722275.1\|935279_936578_+	LCP family protein	NA	NA	NA	NA
WP_010905608.1\|936675_936945_+	30S ribosomal protein S14	NA	NA	NA	NA
WP_012897539.1\|937110_937740_+	cell wall-active antibiotics response protein	NA	NA	NA	NA
WP_012897540.1\|937736_938735_+	sensor histidine kinase	NA	NA	NA	NA
WP_003131402.1\|938762_939392_+	response regulator transcription factor	NA	NA	NA	NA
WP_021722276.1\|939462_940269_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_012897543.1\|940371_940962_+	peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	3.9e-26	41.9
WP_003131405.1\|940963_941395_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_003131406.1\|941391_941997_+	TVP38/TMEM64 family protein	M1Q152	Streptococcus_phage	2.2e-29	36.9
WP_021722277.1\|942217_943462_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_021722278.1\|943686_944757_+	2,3-butanediol dehydrogenase	M1PHA2	Moumouvirus	1.6e-06	27.0
WP_012897548.1\|944781_945543_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA
WP_003131412.1\|945816_945978_+	hypothetical protein	NA	NA	NA	NA
WP_021722279.1\|946063_947557_+	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SGN0	Hokovirus	4.1e-24	24.9
WP_002403339.1\|947828_948029_+	helix-turn-helix transcriptional regulator	A0A2K5B261	Erysipelothrix_phage	2.4e-12	55.6
WP_021722280.1\|951300_952005_+	DUF4391 domain-containing protein	A0A2K5B2C0	Erysipelothrix_phage	2.2e-68	50.6
WP_050573375.1\|952143_954042_+	site-specific DNA-methyltransferase	A0A2K5B255	Erysipelothrix_phage	1.8e-157	47.9
WP_021722283.1\|954399_954828_+	hypothetical protein	NA	NA	NA	NA
WP_021722284.1\|954782_955331_+	hypothetical protein	NA	NA	NA	NA
WP_021722285.1\|955344_957219_+	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	9.9e-201	56.9
WP_021722286.1\|957239_960230_+	DEAD/DEAH box helicase family protein	A0A2K5B2C2	Erysipelothrix_phage	0.0e+00	71.1
WP_021722287.1\|960265_962140_+	ImmA/IrrE family metallo-endopeptidase	E4ZFJ9	Streptococcus_phage	1.1e-66	28.9
WP_155242619.1\|962646_963066_+	hypothetical protein	NA	NA	NA	NA
WP_021722289.1\|963136_963910_+	phage antirepressor KilAC domain-containing protein	A0A1Q1PVU2	Staphylococcus_phage	2.0e-67	50.8
WP_021722290.1\|963902_964247_+	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	2.2e-26	50.5
WP_032946671.1\|964239_966498_+	primase C-terminal domain-containing protein	E4ZFK6	Streptococcus_phage	6.1e-205	48.4
WP_021722292.1\|966636_966846_+	hypothetical protein	NA	NA	NA	NA
WP_021722293.1\|966845_967121_+	VRR-NUC domain-containing protein	A0A0A7RTE1	Clostridium_phage	4.9e-08	43.3
WP_021722294.1\|967101_968448_+	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	3.0e-159	69.8
WP_021722295.1\|968450_968879_+	DUF1492 domain-containing protein	A0A2K5B275	Erysipelothrix_phage	4.6e-29	46.4
WP_032946708.1\|969065_969431_+	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	1.2e-33	59.6
WP_021722296.1\|969563_970136_+	hypothetical protein	A0A2K5B277	Erysipelothrix_phage	6.8e-44	48.2
WP_032946673.1\|970150_970933_+	S-adenosylmethionine synthetase	NA	NA	NA	NA
WP_021722298.1\|970917_972168_+	site-specific DNA-methyltransferase	A0A2I4R670	Erysipelothrix_phage	1.3e-140	60.6
WP_021722299.1\|972241_972619_+	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	9.7e-15	53.4
WP_032946677.1\|972620_972815_+	hypothetical protein	NA	NA	NA	NA
WP_032946679.1\|972798_972975_+	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_155242620.1\|972974_973115_+	hypothetical protein	NA	NA	NA	NA
WP_021722303.1\|973196_974762_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	3.2e-253	78.7
WP_021722304.1\|974771_976130_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	7.0e-156	65.3
WP_050573380.1\|976047_976782_+\|protease	Clp protease ClpP	Q6DMU1	Streptococcus_phage	7.1e-62	55.3
WP_021722306.1\|976785_977997_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	3.2e-99	48.1
WP_021722307.1\|978007_978319_+\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	1.5e-37	77.0
WP_021722308.1\|978315_978654_+\|head	phage head closure protein	A0A2K5B291	Erysipelothrix_phage	3.3e-22	50.0
WP_021722309.1\|978646_979078_+	HK97 gp10 family phage protein	A0A2K5B292	Erysipelothrix_phage	6.2e-42	63.6
WP_021722310.1\|979074_979416_+	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	9.7e-30	53.2
WP_021722311.1\|979418_980009_+\|tail	phage major tail protein	A0A2K5B294	Erysipelothrix_phage	3.3e-78	74.7
WP_021722312.1\|980018_980399_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	5.0e-35	63.4
WP_021722313.1\|980603_983165_+	hypothetical protein	A0A2K5B297	Erysipelothrix_phage	7.9e-84	70.4
WP_021722314.1\|983180_983873_+	hypothetical protein	M1PFK1	Streptococcus_phage	3.5e-10	35.2
WP_021722315.1\|983869_987757_+\|tail	phage tail protein	A0A1C8E983	Bacillus_phage	1.5e-94	44.8
WP_021722316.1\|987765_987927_+	hypothetical protein	NA	NA	NA	NA
WP_021722317.1\|987913_988327_+	DUF1617 family protein	A0A1S5RCP5	Lactobacillus_phage	6.9e-06	27.9
WP_021722318.1\|988327_988747_+\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	4.7e-42	58.8
WP_032946681.1\|988736_989657_+	N-acetylmuramoyl-L-alanine amidase	A0A1D8ETE4	Propionibacterium_phage	4.0e-30	38.5
WP_021722320.1\|989668_990148_+	siphovirus Gp157 family protein	A0A059T5F1	Listeria_phage	5.0e-24	45.3
WP_155762135.1\|990264_990507_+	hypothetical protein	A0A2I4R673	Erysipelothrix_phage	2.0e-05	32.8
WP_021722322.1\|990499_990823_+	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	1.8e-17	47.2
WP_021722323.1\|990815_991955_+	DUF2800 domain-containing protein	M1Q218	Streptococcus_phage	5.9e-124	58.6
WP_021722324.1\|991955_992516_+	DUF2815 family protein	E4ZFK3	Streptococcus_phage	3.7e-71	73.3
WP_021722325.1\|992583_994527_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	9.7e-268	66.9
WP_021722326.1\|994582_995008_+	hypothetical protein	Q6DMV1	Streptococcus_phage	4.3e-11	29.9
WP_021722327.1\|995000_995153_+	hypothetical protein	NA	NA	NA	NA
WP_080651974.1\|995312_996983_+	recombinase family protein	Q6DMS6	Streptococcus_phage	4.2e-70	42.3
WP_032946682.1\|996945_998514_+	recombinase family protein	Q6DMS5	Streptococcus_phage	1.6e-151	54.7
WP_021722330.1\|998638_1000720_+	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	2.7e-13	32.8

DBSCAN-SWA_3

1079792 : 1103244

Staphylococcus_phage(21.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003130964.1\|1079792_1080485_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	2.7e-31	34.4
WP_021722552.1\|1080477_1081413_+	ABC transporter permease	NA	NA	NA	NA
WP_012897610.1\|1081514_1082492_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.9e-118	66.0
WP_021722551.1\|1082841_1085010_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	8.6e-257	61.0
WP_021722550.1\|1085145_1085568_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.3e-12	37.3
WP_012897612.1\|1085569_1085788_-	redoxin NrdH	C3U2K9	Lactococcus_phage	7.6e-12	47.6
WP_010905665.1\|1085961_1086603_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_021722549.1\|1086877_1088812_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	4.8e-126	43.5
WP_021722548.1\|1089016_1089556_+	cysteine hydrolase family protein	NA	NA	NA	NA
WP_021722547.1\|1089548_1090382_+	3'-5' exonuclease	A0A0K2SUJ2	Clostridium_phage	3.1e-21	39.4
WP_021722546.1\|1090378_1090828_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_032946778.1\|1091103_1093578_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	2.1e-97	32.2
WP_021722544.1\|1093603_1094509_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_021722543.1\|1094977_1096066_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.2e-51	39.4
WP_021722542.1\|1096065_1096716_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.2e-42	44.1
WP_021722541.1\|1096724_1097921_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.6e-111	51.0
WP_021722540.1\|1097948_1098413_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.8e-39	53.7
WP_021722539.1\|1098515_1098968_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_021722538.1\|1099028_1099934_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	5.4e-11	28.2
WP_003130996.1\|1100080_1100524_+	divergent PAP2 family protein	NA	NA	NA	NA
WP_021722537.1\|1100663_1102295_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_021722536.1\|1102287_1103244_+	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	6.9e-49	37.5

DBSCAN-SWA_4

1229243 : 1285229

Erysipelothrix_phage(61.11%)

protease,tail,capsid,integrase,terminase,holin,transposase,portal,head

attL 1237788:1237804|attR 1240740:1240756

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000221326.1\|1229243_1230203_-\|transposase	IS30-like element IS6770 family transposase	NA	NA	NA	NA
WP_021722473.1\|1230357_1231179_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_021722472.1\|1231457_1231712_+	hypothetical protein	NA	NA	NA	NA
WP_021722471.1\|1231918_1233292_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	6.5e-141	56.8
WP_021722470.1\|1233980_1235783_+	N-6 DNA methylase	NA	NA	NA	NA
WP_021722469.1\|1235804_1237316_+	type I restriction-modification system subunit M	A0A220A2U4	Liberibacter_phage	9.5e-53	30.3
WP_080651981.1\|1237260_1238448_+	restriction endonuclease subunit S	NA	NA	NA	NA
1237788:1237804	attL	NA	NA	NA	NA
WP_021722467.1\|1238444_1238987_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_032946745.1\|1238998_1239991_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	5.0e-34	29.2
WP_080651980.1\|1240072_1240735_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_021722463.1\|1240784_1241618_+	hypothetical protein	NA	NA	NA	NA
1240740:1240756	attR	NA	NA	NA	NA
WP_021722462.1\|1241619_1242120_+	TIR domain-containing protein	NA	NA	NA	NA
WP_021722461.1\|1242148_1245166_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	3.0e-66	27.3
WP_021722460.1\|1245225_1247061_+	helix-turn-helix transcriptional regulator	A0A1X9I6C7	Streptococcus_phage	1.6e-78	31.4
WP_021722459.1\|1247464_1248070_+	hypothetical protein	NA	NA	NA	NA
WP_021722458.1\|1248165_1248375_+	hypothetical protein	NA	NA	NA	NA
WP_021722457.1\|1248367_1248682_+	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	2.5e-16	47.1
WP_021722456.1\|1248681_1249833_+	DUF2800 domain-containing protein	M1Q218	Streptococcus_phage	7.1e-133	62.9
WP_021722455.1\|1249822_1250365_+	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	2.3e-81	81.7
WP_021722454.1\|1250423_1252364_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	4.5e-265	67.8
WP_021722453.1\|1252506_1253289_+	phage antirepressor KilAC domain-containing protein	A0A1Q1PVU2	Staphylococcus_phage	6.6e-74	54.7
WP_021722452.1\|1253281_1253626_+	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	8.2e-29	51.4
WP_021722451.1\|1253618_1255862_+	primase C-terminal domain-containing protein	A0A1B0RXC5	Streptococcus_phage	6.1e-205	48.6
WP_021722450.1\|1255998_1256208_+	hypothetical protein	NA	NA	NA	NA
WP_021722449.1\|1256204_1256492_+	VRR-NUC domain-containing protein	A0A1B0RXC4	Streptococcus_phage	9.3e-26	64.4
WP_021722448.1\|1256488_1257841_+	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	2.2e-162	71.1
WP_021722447.1\|1257840_1258254_+	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_050573381.1\|1258407_1258773_+	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	3.8e-32	56.0
WP_032946741.1\|1258902_1259481_+\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	8.1e-53	51.8
WP_021722445.1\|1259485_1260274_+	hypothetical protein	NA	NA	NA	NA
WP_021722444.1\|1260274_1261525_+	site-specific DNA-methyltransferase	A0A2I4R670	Erysipelothrix_phage	4.5e-141	60.4
WP_021722443.1\|1261613_1262006_+	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	2.8e-17	55.7
WP_021722442.1\|1262008_1262203_+	hypothetical protein	NA	NA	NA	NA
WP_021722441.1\|1262186_1262363_+	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_021722440.1\|1262423_1264022_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	1.0e-270	85.0
WP_010753828.1\|1264050_1264383_+	hypothetical protein	NA	NA	NA	NA
WP_021722439.1\|1264440_1265802_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	2.9e-178	74.1
WP_080651983.1\|1265719_1266460_+\|protease	Clp protease ClpP	A0A1B0RXE1	Streptococcus_phage	1.9e-62	56.1
WP_021722437.1\|1266463_1267681_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	1.1e-104	49.8
WP_021722436.1\|1267691_1268003_+\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	2.8e-36	74.0
WP_021722435.1\|1267999_1268338_+\|head,tail	head-tail adaptor protein	A0A2K5B291	Erysipelothrix_phage	5.6e-22	52.8
WP_032946740.1\|1268330_1268762_+	HK97 gp10 family phage protein	A0A2K5B292	Erysipelothrix_phage	1.3e-39	60.7
WP_032946739.1\|1268758_1269100_+	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	1.2e-27	49.6
WP_021722432.1\|1269101_1269692_+\|tail	phage major tail protein, phi13 family	A0A2K5B294	Erysipelothrix_phage	2.2e-77	72.7
WP_021722431.1\|1269698_1270082_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	2.4e-37	65.0
WP_021722429.1\|1270332_1270983_+	hypothetical protein	NA	NA	NA	NA
WP_021722428.1\|1271049_1273611_+	hypothetical protein	A0A2K5B297	Erysipelothrix_phage	8.8e-83	73.1
WP_021722427.1\|1273684_1274413_+	EcsC family protein	NA	NA	NA	NA
WP_021722426.1\|1274467_1275160_+	hypothetical protein	A0A1L2BYA2	Clostridium_phage	1.0e-17	26.3
WP_021722425.1\|1275156_1279209_+\|tail	phage tail protein	A0A1B1P770	Bacillus_phage	2.4e-87	41.7
WP_021722424.1\|1279221_1279383_+	hypothetical protein	NA	NA	NA	NA
WP_003731143.1\|1279369_1279789_+	DUF1617 family protein	A0A1S5RCP5	Lactobacillus_phage	2.4e-06	26.5
WP_025186379.1\|1279837_1280251_+\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	1.5e-37	57.0
WP_032946749.1\|1280240_1281161_+	N-acetylmuramoyl-L-alanine amidase	A0A1D8ETE4	Propionibacterium_phage	1.1e-27	46.2
WP_021722422.1\|1281386_1281626_+	hypothetical protein	NA	NA	NA	NA
WP_021722421.1\|1281685_1283245_+	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	1.9e-128	44.5
WP_021722420.1\|1283248_1283677_+	recombinase	NA	NA	NA	NA
WP_021722419.1\|1283666_1285229_+	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	1.1e-152	56.1

DBSCAN-SWA_5

1514272 : 1525420

Lactococcus_phage(72.73%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167349366.1\|1514272_1515199_-	glycosyltransferase	V9QJB1	Oenococcus_phage	1.1e-78	50.2
WP_021722793.1\|1515116_1517015_-	hypothetical protein	NA	NA	NA	NA
WP_021722791.1\|1518044_1518506_-\|holin	phage holin	Q8LTJ7	Lactococcus_phage	1.4e-44	90.3
WP_021722789.1\|1518680_1519472_-\|tail	phage tail tape measure protein	A0A1S5SFC1	Streptococcus_phage	5.1e-82	60.8
WP_155242633.1\|1520042_1520264_+	hypothetical protein	NA	NA	NA	NA
WP_021722787.1\|1520357_1520543_-	hypothetical protein	Q8LTR8	Lactococcus_phage	2.4e-14	65.6
WP_032946879.1\|1520550_1520721_-	DUF1660 domain-containing protein	A0A1P8BKU8	Lactococcus_phage	2.4e-13	60.0
WP_021722786.1\|1520717_1520948_-	hypothetical protein	Q94M84	Lactococcus_phage	5.1e-35	93.4
WP_021722785.1\|1520994_1521168_-	hypothetical protein	Q9AZZ8	Lactococcus_phage	1.0e-11	60.8
WP_021722783.1\|1521351_1522107_-	ATP-binding protein	Q8LTN1	Lactococcus_phage	3.6e-93	69.5
WP_050573388.1\|1522115_1522505_-	phage replisome organiser protein	A0A1P8BLH6	Lactococcus_phage	4.5e-07	42.3
WP_155242632.1\|1522547_1522910_-	phage replisome organizer N-terminal domain-containing protein	C9E2N2	Enterococcus_phage	2.5e-52	79.2
WP_021722782.1\|1523759_1523999_-	phage protein	NA	NA	NA	NA
WP_021722781.1\|1524076_1524340_-	phage protein	NA	NA	NA	NA
WP_021722780.1\|1524439_1524841_+	hypothetical protein	NA	NA	NA	NA
WP_155242631.1\|1524821_1524986_-	hypothetical protein	NA	NA	NA	NA
WP_021722779.1\|1525129_1525420_-	hypothetical protein	Q9AZW0	Lactococcus_phage	1.6e-46	93.8

DBSCAN-SWA_6

1629975 : 1640278

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021723010.1\|1629975_1631532_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.0e-70	45.6
WP_003130055.1\|1631707_1632250_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.8e-09	29.9
WP_021723009.1\|1632386_1633424_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_021723008.1\|1633555_1634086_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_021723007.1\|1634136_1635726_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-09	22.2
WP_021723006.1\|1635892_1636441_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.2e-19	31.7
WP_021723005.1\|1636469_1637486_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	1.4e-60	41.8
WP_021723004.1\|1637674_1640278_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	3.2e-125	33.0

DBSCAN-SWA_7

1881217 : 1891076

Prochlorococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003130886.1\|1881217_1881979_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-17	30.0
WP_003130885.1\|1882144_1882954_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.0e-10	26.5
WP_003130884.1\|1882987_1883881_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_021722156.1\|1883880_1884804_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_017864882.1\|1884924_1885776_-	phosphate ABC transporter substrate-binding protein	E3SNT9	Prochlorococcus_phage	4.2e-05	27.3
WP_003130880.1\|1886122_1887019_-	phosphate ABC transporter substrate-binding protein	E3SM63	Prochlorococcus_phage	7.2e-08	32.4
WP_003130878.1\|1887296_1887764_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.7e-43	56.6
WP_021722157.1\|1887795_1888353_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_021722158.1\|1888457_1891076_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-64	33.3

DBSCAN-SWA_8

1959489 : 1999954

Lactococcus_phage(96.23%)

protease,tail,capsid,integrase,terminase,holin,portal,head

attL 1954847:1954863|attR 2007023:2007039

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1954847:1954863	attL	NA	NA	NA	NA
WP_010906206.1\|1959489_1959669_-	hypothetical protein	Q9AZG2	Lactococcus_phage	9.2e-24	100.0
WP_021722195.1\|1959756_1960536_-	C40 family peptidase	A0A1P8BLX0	Lactococcus_phage	3.7e-125	97.3
WP_021722196.1\|1960535_1960811_-\|holin	holin	A0A182BQ79	Lactococcus_phage	5.4e-15	59.7
WP_021722197.1\|1960823_1961048_-	hemolysin XhlA family protein	Q9AZR4	Lactococcus_phage	3.0e-32	97.3
WP_021722198.1\|1961060_1962464_-	hypothetical protein	A0A059NTA1	Lactococcus_phage	1.1e-108	56.6
WP_021722199.1\|1962463_1962601_-	hypothetical protein	A0A182BQ82	Lactococcus_phage	2.5e-05	62.2
WP_021722200.1\|1962597_1965027_-\|tail	PblB-like tail protein	A0A059NT86	Lactococcus_phage	0.0e+00	75.7
WP_021722201.1\|1965038_1965404_-	hypothetical protein	A0A059NT91	Lactococcus_phage	1.2e-62	98.3
WP_021722202.1\|1965415_1970197_-	SLT domain protein	A0A059NT57	Lactococcus_phage	0.0e+00	81.6
WP_021722203.1\|1970228_1970600_-	hypothetical protein	A0A059NT78	Lactococcus_phage	4.7e-46	97.1
WP_021722204.1\|1970623_1971034_-	hypothetical protein	A0A182BQ86	Lactococcus_phage	7.0e-51	75.7
WP_021722205.1\|1971107_1971533_-\|tail	major tail protein	A0A182BQ87	Lactococcus_phage	2.5e-67	92.1
WP_021722206.1\|1971545_1971908_-	hypothetical protein	A0A182BQ88	Lactococcus_phage	1.1e-60	99.2
WP_032946647.1\|1971907_1972456_-	hypothetical protein	A0A059NT55	Lactococcus_phage	1.0e-97	99.5
WP_032946648.1\|1972439_1972793_-	hypothetical protein	A0A059NT74	Lactococcus_phage	9.6e-57	93.2
WP_021722209.1\|1972773_1973103_-\|head,tail	phage head-tail connector protein	A0A059NT99	Lactococcus_phage	8.7e-44	84.3
WP_021722210.1\|1973109_1973283_-	hypothetical protein	NA	NA	NA	NA
WP_021722211.1\|1973286_1974156_-\|head	Major head protein	A0A182BQ73	Lactococcus_phage	1.0e-147	96.5
WP_021722212.1\|1974167_1974824_-	DUF4355 domain-containing protein	A0A182BQ92	Lactococcus_phage	2.3e-80	91.3
WP_021722213.1\|1974988_1976095_-\|capsid	minor capsid protein	A0A059NT80	Lactococcus_phage	5.5e-199	97.3
WP_021722214.1\|1976100_1976388_-\|protease	ribosomal-processing cysteine protease Prp	A0A182BQ95	Lactococcus_phage	4.3e-47	96.8
WP_167349361.1\|1976384_1976549_-	hypothetical protein	NA	NA	NA	NA
WP_021722216.1\|1976505_1978014_-\|portal	phage portal protein	A0A182BQ97	Lactococcus_phage	1.9e-247	97.6
WP_021722218.1\|1979246_1979759_-\|terminase	terminase small subunit	A0A059NT97	Lactococcus_phage	6.4e-78	94.1
WP_021722219.1\|1980222_1980645_-	DUF722 domain-containing protein	Q9AYX5	Lactococcus_phage	6.1e-74	98.6
WP_021722221.1\|1981262_1981472_+	hypothetical protein	NA	NA	NA	NA
WP_021722222.1\|1981523_1981706_-	DUF1660 domain-containing protein	A0A1P8BKU8	Lactococcus_phage	5.3e-27	90.0
WP_021722223.1\|1981702_1981921_-	hypothetical protein	A0A059NT96	Lactococcus_phage	7.0e-34	94.4
WP_068872834.1\|1981939_1982275_-	DUF1140 family protein	A0A1B1IMW5	Lactococcus_phage	5.4e-49	87.3
WP_021722225.1\|1982271_1982556_-	hypothetical protein	Q8H9H2	Lactococcus_phage	6.8e-21	60.2
WP_021722226.1\|1982545_1982872_-	hypothetical protein	Q9MCF8	Lactococcus_phage	7.8e-21	85.5
WP_021722227.1\|1982871_1983291_-	dUTP diphosphatase	Q9AZU3	Lactococcus_phage	2.2e-68	93.5
WP_021722228.1\|1983287_1983611_-	hypothetical protein	A0A0D3MSP5	Lactococcus_phage	1.7e-39	71.6
WP_021722229.1\|1983607_1984159_-	DUF1642 domain-containing protein	A0A1P8BMI2	Lactococcus_phage	9.8e-40	49.5
WP_010905356.1\|1984151_1984358_-	DUF1125 domain-containing protein	Q9MC26	Lactococcus_phage	2.6e-30	100.0
WP_021722230.1\|1984358_1984619_-	hypothetical protein	NA	NA	NA	NA
WP_032946652.1\|1984623_1984932_-	hypothetical protein	Q9G0E0	Lactococcus_phage	7.4e-13	97.1
WP_021722232.1\|1984940_1985450_-	phage protein	Q9AZU7	Lactococcus_phage	1.3e-09	100.0
WP_032946654.1\|1985460_1985826_-	DUF658 family protein	A0A1P8BLY8	Lactococcus_phage	8.1e-59	95.9
WP_021722234.1\|1985800_1985965_-	hypothetical protein	Q9AZP4	Lactococcus_phage	6.5e-24	98.1
WP_032946700.1\|1986075_1986312_-	DUF1031 family protein	Q9AZV0	Lactococcus_phage	5.3e-35	94.9
WP_021722235.1\|1986443_1986818_-	DUF1064 domain-containing protein	Q9AZV2	Lactococcus_phage	2.1e-62	99.2
WP_021722236.1\|1987539_1988322_-	phage replisome organiser protein	A0A1P8BKN4	Lactococcus_phage	2.0e-126	96.2
WP_021722237.1\|1988321_1988648_-	HNH endonuclease	A0A1X9IGF1	Lactococcus_phage	2.4e-46	79.4
WP_021722238.1\|1988773_1989199_-	single-stranded DNA-binding protein	Q9MC32	Lactococcus_phage	1.4e-70	92.9
WP_021722239.1\|1989195_1989951_-	phage protein	Q0ILF6	Lactococcus_phage	1.1e-137	94.3
WP_011835837.1\|1989959_1990355_-	hypothetical protein	A0A1P8BL23	Lactococcus_phage	2.5e-69	99.2
WP_021722240.1\|1990469_1990685_-	DUF1408 domain-containing protein	Q38272	Lactococcus_phage	2.0e-33	97.2
WP_032946657.1\|1990788_1991223_+	hypothetical protein	NA	NA	NA	NA
WP_155242617.1\|1991212_1991365_-	hypothetical protein	NA	NA	NA	NA
WP_021722243.1\|1991522_1991783_-	hypothetical protein	Q9AZF3	Lactococcus_phage	3.4e-43	91.9
WP_021722244.1\|1991796_1992534_-	ORF6C domain-containing protein	Q9B012	Lactococcus_phage	3.5e-117	87.9
WP_010905683.1\|1992564_1992783_-	DUF739 family protein	O48504	Lactococcus_phage	2.9e-35	100.0
WP_021722245.1\|1992951_1993494_+	helix-turn-helix domain-containing protein	Q9B013	Lactococcus_phage	2.0e-90	98.3
WP_021722246.1\|1993490_1993928_+	ImmA/IrrE family metallo-endopeptidase	A0A059NT76	Lactococcus_phage	5.3e-81	98.6
WP_068872835.1\|1993990_1994572_+	hypothetical protein	A0A182BQD0	Lactococcus_phage	4.0e-44	74.6
WP_021722247.1\|1994691_1995831_+\|integrase	site-specific integrase	A0A1X9IGD8	Lactococcus_phage	1.1e-154	73.4
WP_004255207.1\|1996033_1997446_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_021722248.1\|1997693_1998137_-	SUF system NifU family Fe-S cluster assembly protein	A0A218MM29	uncultured_virus	1.7e-05	32.4
WP_010906139.1\|1998252_1998735_-	hypothetical protein	NA	NA	NA	NA
WP_021722249.1\|1998736_1999954_-	cysteine desulfurase	Q2XUY6	environmental_halophage	1.4e-110	46.3
2007023:2007039	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2036034 : 2051116

Lactococcus_phage(86.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010906204.1\|2036034_2036955_-	DUF4065 domain-containing protein	Q9AZG0	Lactococcus_phage	1.6e-172	99.7
WP_021722267.1\|2036966_2037263_-	hypothetical protein	Q9AZG1	Lactococcus_phage	8.1e-49	99.0
WP_010906206.1\|2037451_2037631_-	hypothetical protein	Q9AZG2	Lactococcus_phage	9.2e-24	100.0
WP_012898378.1\|2037822_2038053_-	hypothetical protein	A0A1P8BME4	Lactococcus_phage	4.6e-36	93.4
WP_021722668.1\|2038195_2038702_-	GNAT family N-acetyltransferase	Q9AZG4	Lactococcus_phage	2.8e-89	98.8
WP_012898380.1\|2038864_2039035_-	hypothetical protein	Q9AZG5	Lactococcus_phage	3.1e-05	95.7
WP_021722667.1\|2039331_2039580_-	hypothetical protein	NA	NA	NA	NA
WP_012898382.1\|2039576_2039933_-	phage protein	NA	NA	NA	NA
WP_012898383.1\|2040091_2040298_-	hypothetical protein	Q9AZG9	Lactococcus_phage	2.4e-31	95.6
WP_021722666.1\|2040858_2042556_-	hypothetical protein	Q9AZH2	Lactococcus_phage	4.5e-245	96.0
WP_021722665.1\|2042565_2042835_-	hypothetical protein	Q9AZH3	Lactococcus_phage	4.0e-39	96.6
WP_012898387.1\|2042980_2043235_-	hypothetical protein	Q9AZH5	Lactococcus_phage	2.9e-15	89.1
WP_012898388.1\|2043236_2043407_-	DUF1655 domain-containing protein	Q9AZH6	Lactococcus_phage	1.8e-24	96.4
WP_012898389.1\|2043471_2044164_-	Rha family transcriptional regulator	R9QNB1	Lactococcus_phage	7.5e-114	97.3
WP_012898390.1\|2044258_2044453_-	hypothetical protein	R9QNG3	Lactococcus_phage	2.1e-05	43.5
WP_012898391.1\|2044610_2045297_+	helix-turn-helix transcriptional regulator	O34051	Streptococcus_phage	1.4e-06	40.3
WP_012898393.1\|2046717_2047161_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_068872836.1\|2047246_2047819_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_021722662.1\|2047956_2048169_+	hypothetical protein	NA	NA	NA	NA
WP_021722660.1\|2048293_2051116_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	6.5e-305	56.0

DBSCAN-SWA_10

2277961 : 2305211

Lactococcus_phage(33.33%)

integrase,bacteriocin,transposase

attL 2272638:2272657|attR 2293098:2293117

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2272638:2272657	attL	NA	NA	NA	NA
WP_021721760.1\|2277961_2278267_+\|bacteriocin	bacteriocin immunity protein	Q9AZK7	Lactococcus_phage	6.2e-44	91.1
WP_032946509.1\|2278361_2279540_+\|integrase	site-specific integrase	Q9AZK8	Lactococcus_phage	5.4e-88	44.9
WP_021721763.1\|2279752_2280379_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_004254656.1\|2280417_2281437_-	ABC transporter permease	NA	NA	NA	NA
WP_021721764.1\|2281429_2282200_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.9e-29	33.2
WP_021721765.1\|2284301_2284703_+	HIT family protein	NA	NA	NA	NA
WP_021721766.1\|2284715_2284937_+	hypothetical protein	NA	NA	NA	NA
WP_015427109.1\|2284948_2285293_-	hypothetical protein	NA	NA	NA	NA
WP_004254644.1\|2285370_2286060_-	50S ribosomal protein L1	NA	NA	NA	NA
WP_011677074.1\|2286356_2286782_-	50S ribosomal protein L11	NA	NA	NA	NA
WP_021721767.1\|2286918_2287683_-	ABC transporter permease	NA	NA	NA	NA
WP_068872844.1\|2287682_2288561_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.9e-05	22.4
WP_010906259.1\|2288627_2288837_-	hypothetical protein	NA	NA	NA	NA
WP_012898514.1\|2288871_2289390_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_021723456.1\|2289564_2290422_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_021723455.1\|2290467_2290926_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004254618.1\|2291018_2291576_-	ribosome recycling factor	NA	NA	NA	NA
WP_004254608.1\|2291736_2292453_-	UMP kinase	NA	NA	NA	NA
WP_012898517.1\|2292537_2292990_-	hypothetical protein	NA	NA	NA	NA
WP_021723454.1\|2293123_2294311_-	acetate kinase	NA	NA	NA	NA
2293098:2293117	attR	NA	NA	NA	NA
WP_004254593.1\|2294467_2295655_-	acetate kinase	NA	NA	NA	NA
WP_068872845.1\|2295763_2296738_-\|transposase	IS30-like element IS6770 family transposase	NA	NA	NA	NA
WP_021723475.1\|2296918_2297857_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_038602250.1\|2297952_2298204_-	DUF3165 family protein	NA	NA	NA	NA
WP_021723473.1\|2298304_2300137_-	translational GTPase TypA	A0A1S5SF82	Streptococcus_phage	9.2e-18	35.4
WP_000221326.1\|2300305_2301265_-\|transposase	IS30-like element IS6770 family transposase	NA	NA	NA	NA
WP_021723112.1\|2301392_2301851_-	hypothetical protein	NA	NA	NA	NA
WP_032946986.1\|2301852_2302257_-	hypothetical protein	NA	NA	NA	NA
WP_021723110.1\|2302269_2302896_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-19	35.0
WP_021723109.1\|2302896_2304876_-\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
WP_021723108.1\|2304872_2305211_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_LT599053

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LT599053_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT599053_1

11933-12087

Orphan

Consensus_repeat	Method
AATACAACATTTTTACGTCATA	PILER-CR

2 spacers

The CRISPR arrays of NZ_LT599053_1

>merge|NZ_LT599053|1|11933-12087|PILER-CR
AATACAACATTTTTACGTCATAATCTTTGTTTTTATTAATATACACTATTTTTTTATTCTTGTCTAGTAATAATACAACATTTTTACGATTTACAGCAACATTTTTACGTCACAAGCAACATTTTTACGGTCATATACAACATTTTTACGTCATA

>NZ_LT599053|1|1|11933-12087|PILER-CR
AATACAACATTTTTACGTCATA	ATCTTTGTTTTTATTAATATACACTATTTTTTTATTCTTGTCTAGTAAT
AATACAACATTTTTACGATTTA	CAGCAACATTTTTACGTCACAAGCAACATTTTTACGGTCATATAC
AACATTTTTACGTCATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT599053.1\|WP_068872869.1\|4284_4878_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224054
NZ_LT599053.1\|WP_011915262.1\|8229_8958_-\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319263
NZ_LT599053.1\|WP_021721733.1\|2987_3179_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599053.1\|WP_012898751.1\|15732_15960_+\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NZ_LT599053.1\|WP_021723416.1\|16639_17329_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_LT599053.1\|WP_017865277.1\|21747_21897_-\|lactococcin-family-bacteriocin	unknown	unknown	gnl\|CDD\|113152
NZ_LT599053.1\|WP_003140242.1\|17933_18110_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599053.1\|WP_021723420.1\|6394_7861_+\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|176454
NZ_LT599053.1\|WP_167349368.1\|7850_8018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599053.1\|WP_021723418.1\|13168_15031_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319774
NZ_LT599053.1\|WP_011915264.1\|10474_11827_-\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|376444
NZ_LT599053.1\|WP_021723408.1\|22073_22754_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_LT599053.1\|WP_021723409.1\|20932_21637_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_LT599053.1\|WP_021723411.1\|20070_20184_-\|lactococcin-family-bacteriocin	unknown	unknown	gnl\|CDD\|113152
NZ_LT599053.1\|WP_021723421.1\|5223_6249_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376157
NZ_LT599053.1\|WP_021721732.1\|3598_4279_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599053.1\|WP_011915219.1\|16008_16554_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|153102
NZ_LT599053.1\|WP_012898729.1\|8961_9720_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_LT599053.1\|WP_014573541.1\|9729_9963_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT599053.1\|WP_021723414.1\|17690_17882_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT599053.1\|WP_068872869.1\|4284_4878_+\|AAA-family-ATPase	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.75751e-21
NZ_LT599053.1\|WP_011915262.1\|8229_8958_-\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319263	cd16406, ParB_N_like, ParB N-terminal, parA-binding, -like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	3.99669e-13
NZ_LT599053.1\|WP_012898751.1\|15732_15960_+\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	1.64786e-11
NZ_LT599053.1\|WP_021723416.1\|16639_17329_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.10896e-36
NZ_LT599053.1\|WP_017865277.1\|21747_21897_-\|lactococcin-family-bacteriocin	gnl\|CDD\|113152	pfam04369, Lactococcin, Lactococcin-like family. Family of bacteriocins from lactic acid bacteria.	3.23787e-07
NZ_LT599053.1\|WP_011915219.1\|16008_16554_+\|DNA-binding-protein	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	0.000289835
NZ_LT599053.1\|WP_021723418.1\|13168_15031_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319774	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase. Heavy metal-transporting ATPases (Type IB ATPases) transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. These ATPases include mammalian copper-transporting ATPases, ATP7A and ATP7B, Bacillus subtilis CadA which transports cadmium, zinc and cobalt out of the cell, Bacillus subtilis ZosA/PfeT which transports copper, and perhaps also zinc and ferrous iron, Archaeoglobus fulgidus CopA and CopB, Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase, and Escherichia coli ZntA which is selective for Pb(2+), Zn(2+), and Cd(2+). The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This family belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_LT599053.1\|WP_011915264.1\|10474_11827_-\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	3.07827e-07
NZ_LT599053.1\|WP_021723409.1\|20932_21637_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.66147e-06
NZ_LT599053.1\|WP_021723411.1\|20070_20184_-\|lactococcin-family-bacteriocin	gnl\|CDD\|113152	pfam04369, Lactococcin, Lactococcin-like family. Family of bacteriocins from lactic acid bacteria.	0.00144344
NZ_LT599053.1\|WP_021723421.1\|5223_6249_+\|hypothetical-protein	gnl\|CDD\|376157	pfam18734, HEPN_AbiU2, AbiU2. AbiU2-like HEPN.	0.00318284
NZ_LT599053.1\|WP_021723420.1\|6394_7861_+\|Y-family-DNA-polymerase	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	1.8224e-99
NZ_LT599053.1\|WP_012898729.1\|8961_9720_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	1.31632e-41
NZ_LT599053.1\|WP_021723408.1\|22073_22754_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.74405e-90

>NZ_LT599053.1|WP_011915264.1|10474_11827_-|RepB-family-plasmid-replication-initiator-protein
MQSYDLLDELDSEDKFRKDIKYSRQLPEMFSTEDINAASENITYAILGELRDRYNGSEPVTFSYQELAELGGLWVTRKNGVKSLYNGKRLQKIMYDLNEALKNFSYYQVRETNDDGTPKSWKTINIFSVIDFDGTKKEVKLTISNAQISSEQVDAKGHVIDKPLYVYDLINSKDWRTVKHLQYNRGINNSLPSKYSKRVYRFISEFRSFPKGTKMRIDDFDKKILKILKTQEDSFNTKEVFDLRKNRKKYLETAVKEISELTTPEGTQIVKNLDYIYHTSGRRIQSIEFTYTPFNADLSGSNHISMNSRTSSPGTASPFINEARMVLEYFNYLSKVNFNLDENGIIKHLPNYYDIQFELDDIQLLQPIHKLLESGVAIDELLQVAEMKAIDWKLDSNQMINNFRPSVVFGNKFSEYRAFLTTYKAQNIHKLVFDSSSDFYVPMNGPWDSK
>NZ_LT599053.1|WP_014573541.1|9729_9963_-|hypothetical-protein
MEKVTDEIKNVVQRLLDDDENFSGWYIEKELEKIGIKVSRMTISNLRNKKTTLGNTKFETLEGLYHFAKTHENINKE
>NZ_LT599053.1|WP_012898729.1|8961_9720_-|AAA-family-ATPase
MKTISLLNLKGGVAKTTTGGNIAKGLANRGFKTLLIDTDMQANATSIFLEDERSKEDYKDFAELIVDEKLEDVDQYVYNVSENLDMIGSSLAVAESELKVRNSFNRNSSNIVKKVLKKLDSKYDYCIIDCAPTINLITLNIIIASDEIIIPIKIDKFALEGYRTTLKNINQIIDDYELDTEVTVLYTMVNRNNIDKQFIQEISGNRFETTIRHQAKPVTESALKNEVLIDSSKSSKVKDDYLNLIDEIVKRG
>NZ_LT599053.1|WP_011915262.1|8229_8958_-|ParB-N-terminal-domain-containing-protein
MSNSFGFTDLMNKDEHKRKKTNTKNIPIEEIKENENNNYDLVDIDKLADSIDELGLLQPVLVKQRDKYSYELIAGHRRFNAIKKLISENRLPEDYEVLAKKVDEDEDELVTRLKLHETNLQTRSLLKMPEEEKIAIIDDYMDILDKAKKQGVQINGKPVKGKTRDLIAERFGISHYTAQKLIRKAKEQGGEEEGAKISPQKKTAKKPITQLKKIETQLEKLEFEGTEEEQEIKKKLIELLMK
>NZ_LT599053.1|WP_167349368.1|7850_8018_+|hypothetical-protein
MSVDRSYSPYEVIRAYHDRGMMKWGAFATGELTEAQNTFEKEKKMIRKFKLYHIM
>NZ_LT599053.1|WP_021723420.1|6394_7861_+|Y-family-DNA-polymerase
MEQSKLNHLFNYSLEPRRAILFEDVKSNYASIECVQRNLNPLTTSLCVMSRADNSKGLTLASSPTFKKVFGMKNVSRASDLPFLIETRKFNYPQWYRTHTDIHGQRTEPTLQYVAFIESWAKRTWIVPPQMQLYVDYKIEVTDILTNYTSIDEIHSYSIDESFLDVTESLNFFYPEIKNRYEQMNRIALDLQREILNKLGLYVTVGMGDNPLLAKLAMDNYAKHNQNMRALIRYEDVPSKLWTLPKMTDFWGIGKRTEKRLNKLGITSIKELANADPLLLKQNLGTIGLQHFFHANGIDESNVREKYTPKSTSFSNSQILPRDYHKQREIELVIKEMAENLAIRLRKGGKLASNLSLYAGVASTSEYSSVKVSRNIEATQNTKELQDLAISLFREKYQGGAIRQIGISGNQLSDSSVKQLSLFESVQENQTNKKQELLQKVIDEIRETFDFLSIQKASSLSEGSRVIYRNKLIGGHAASQEREEKDVS
>NZ_LT599053.1|WP_021723421.1|5223_6249_+|hypothetical-protein
MQPIKIYSSMPKKNPLQIRFEDEILKHFQKKDKADIVNEILPEVNSKVSIKLTFPITREQLTKLDRRQLLVILEVLNSSIPEVSLFKWSNTLFGQSRDAYNKLILLKQYNSLYSKYEYAISISPFFYNNLLDSLVIAIFISVQKIFDNTTGASSVTIEKLLLKYEKNYTNFPAFQDIYKWDKISEEKLLWKWKISEDEIDFFEKNNYSNCSKDDYVEVSPLLVLKLNEWKLNRFKSLKKLEYLYAQRNKIYVHNDKLAMNNLNKLTADNPLTFDDFEHFINFSLKFTHFILLMLTNINYAWEPTNINDWEQTLKYTSIGLAKTKKDIEEKTRELRDEFNNK
>NZ_LT599053.1|WP_068872869.1|4284_4878_+|AAA-family-ATPase
MISVENLYIKEIDRTISVKFSKGINFLKGSNGSGKTLLLDYLSGLRKLKNKKNIKNQNSNVYMRQNFSFYTKITAYEFINFIEKLNGYSVQHFFDFLEEYVPNYDFNLYKAKKLGLLSGGERRYLYILAILSIERDLYILDEPFSNIDQETKEQLIKLIEKIHYKKNSNFIITSHELLTFENMNVFEFKDISSGGKI
>NZ_LT599053.1|WP_021721732.1|3598_4279_+|hypothetical-protein
MSEVITLFRLNILLLLKDKVSLVWSLLLPTIMLFINSKEITSINNLSYWWIYIVFNSFIYGVGVFALQEKDSGALSIIFSIKWIPKQFFFGLLLTQILYSLFCLALFNIIPVVMFNFNYIELMFFSLLAILITIPVAFVGYNITYFKNLYASTISSICNILVFLCFIIINVRTPFNFINPFLIIGNELGNFMDGKINLIYIIISLLLIVISLPSIIYFKPLSNESR
>NZ_LT599053.1|WP_021721733.1|2987_3179_+|hypothetical-protein
MIYTIGYYIAVIVLVIMMFSFKSFYSQMNKWSRFGFIFLALGLAFPIVYDFIVGFINGLLKNV
>NZ_LT599053.1|WP_021723418.1|13168_15031_+|heavy-metal-translocating-P-type-ATPase
MAKITLNFQKRLQQHSNHLVILSAILIVLGYLGKYGVNQIWIWNSTMIIASIIGFIPVAIHAYQAIKVKQISIDLLVSIAVIGALFIGEYEESAIVTFLFAFGGFLEKKTLEKTRSSIKELTNMAPSTALSADGEEIDIDEVEIGDKLLVKTGRQVPVDGHIYQGSGYVNEASITGESREIRKETGAKVFAGSILENGTIYVEAEKVGEDTTFGKIIELVEEAQDTKSPAEKFIDRFAKYYTPAVLVIAAIAWVFSHNLELAITILVLGCPGALVIGAPVSNVAGIGNGAKRGVLIKGGDVMNTFSHIDTLLFDKTGTLTKGNTEVVVVKNYGASKEFIDAVASAENESDHPLATAVVRMIGEFNPVKFAKTDVVKGQGIIADDLLIGNEKMMVANHITISPEQKQDIAEITNSGASVVLVAADNRLQLVYGIADEMRSGVKEALEELRHEGISRMIMLTGDNETTAKAVASQLDIDEVRANLMPEEKAEVVKSLKNSGKKIAFIGDGVNDSPSLALANIGIAMGSGTDTAIETSDIVLMKSSFDELVHAYGLSKRTVANMTQNIVIAIVVVLFLLAGLILGGTGLVPSFVNMGTGMFVHEASILIVIVNGMRLIRYREK
>NZ_LT599053.1|WP_012898751.1|15732_15960_+|heavy-metal-associated-domain-containing-protein
MSKVIMKLNELSCPSCMAKIEGAMTTTKGVANAKVLFNASKVKAEFDENVVSADELISKVEKLGYPVLSSKVTVV
>NZ_LT599053.1|WP_011915219.1|16008_16554_+|DNA-binding-protein
MTKLTIDEKYAKELDKAEVDHHKPTAGAMLGHVLSNLFIENVRLTQAGIYAKSPVKCEYLREIAKKEDEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEALLESFIADFQAQNMFITRAIKLANKEEKFALAAVVVELYGYNLQVIRHLAGDLGKAVADFHDEDEDNDN
>NZ_LT599053.1|WP_021723416.1|16639_17329_+|Crp/Fnr-family-transcriptional-regulator
MSKYEHHFSHDEHHCVQLVPLFALLSESELAQVEQVVHHKTFEKGEAVISPFTVPQLAIVAHGTLKIYQLSSAGKEQLLRVIEPGGYAGEDALFGVVNENLYGETLQETKICFLRQQDFKNLLLKYPELSLKLLETTVRRAAEMQYQAQFLMMEDVESRIANYLLQLVKVADSNSVMIPMKMKDLATFIGTTPETISRKFKTLEEKGFIERRGRIIKILDIDSLEDDYA
>NZ_LT599053.1|WP_021723414.1|17690_17882_+|hypothetical-protein
MIYTIGYYIAVIGLVIMMFGFKSFYSQMNKWSRFGFIFLALGLAFPIVYDFIIGFINGLLKNV
>NZ_LT599053.1|WP_003140242.1|17933_18110_+|hypothetical-protein
MGIVTPTPTPPPSNDNFFKQIEKLQANFSKEDNKIWTDVNKEYKKLKNKKSKTEQHEK
>NZ_LT599053.1|WP_021723411.1|20070_20184_-|lactococcin-family-bacteriocin
MENQLNFEVVSNEYLMTINGGQNMSMNDGISTCFRVV
>NZ_LT599053.1|WP_021723409.1|20932_21637_-|CPBP-family-intramembrane-metalloprotease
MKTIKKYKLNLFYLLLFVLLHTLYKIPGYLVFAYYLDNPLILPFTDFLYTNSALAFPILLTLVAVIVIIIPYYLGFFKNTFEGWSTIRVFRLLVILFVLLLLIYFTNVLMIRLGFSSSNHVGRSQNYLITMPKVMQYYIIGIVAPIIEEILWRVFLFKAVGNKNLALVVSWPLFAFAHTGLSLEIIPYLLLSFIVTWAYYRNENVLESIFIHASYNLLSPLSAQFLNSFFHFIV
>NZ_LT599053.1|WP_017865277.1|21747_21897_-|lactococcin-family-bacteriocin
MENQTNFEVVSDEELSKINGGVALELTREGYYNQYGGPLLYENRPLLEY
>NZ_LT599053.1|WP_021723408.1|22073_22754_+|IS6-family-transposase
MNHFKGKQFQKDVIIVAVGYYLRYNLSYREVQELLYDRGVDVCHTTIYRWVQEYSKILYHLWKKKNRQSFYSWKMDETYITIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLHKQFGEPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMETIRGIYKKNRRNGTLFGFSVSTEIKILLGISA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_LT599053	Lactococcus lactis subsp. lactis strain A12 plasmid pA12-4, complete sequence	11955-12003	0	1.0
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NC_013657	Lactococcus lactis subsp. lactis KF147 plasmid pKF147A, complete genome	344-388	0	1.0
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_LT599053	Lactococcus lactis subsp. lactis strain A12 plasmid pA12-4, complete sequence	12021-12065	0	1.0
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP042409	Lactococcus lactis strain CBA3619 plasmid unnamed, complete sequence	37079-37127	1	0.98
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NC_013657	Lactococcus lactis subsp. lactis KF147 plasmid pKF147A, complete genome	406-454	1	0.98
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP016720	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11A, complete sequence	59109-59157	1	0.98
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP016726	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence	88840-88888	1	0.98
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NC_015902	Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF50, complete sequence	1572-1620	1	0.98
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NC_009435	Lactococcus lactis NCDO 1867 plasmid pGdh442, complete sequence	403-451	1	0.98
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NC_019377	Lactococcus lactis subsp. cremoris plasmid pLP712, complete sequence	20848-20896	1	0.98
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NC_019431	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence	52814-52858	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP016720	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11A, complete sequence	59047-59091	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP043526	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_02, complete sequence	6632-6676	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP016726	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence	88778-88822	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP016745	Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence	34777-34821	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP016748	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1B, complete sequence	48043-48087	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NC_015864	Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence	18654-18698	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_AP018500	Lactococcus lactis subsp. cremoris strain C4 plasmid pC41, complete sequence	68455-68499	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP031540	Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107B, complete sequence	59979-60023	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NC_017496	Lactococcus lactis subsp. cremoris A76 plasmid pQA554, complete sequence	51409-51453	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	92473-92517	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP016729	Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4A, complete sequence	59982-60026	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP051521	Lactococcus lactis subsp. cremoris strain F plasmid pScrF75, complete sequence	28375-28419	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP042409	Lactococcus lactis strain CBA3619 plasmid unnamed, complete sequence	37145-37189	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NC_009435	Lactococcus lactis NCDO 1867 plasmid pGdh442, complete sequence	341-385	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP016685	Lactococcus lactis subsp. cremoris strain 158 plasmid p158A, complete sequence	74882-74926	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP016734	Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06A, complete sequence	36691-36735	1	0.978
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP009055	Lactococcus lactis subsp. lactis NCDO 2118 plasmid pNCDO2118, complete sequence	348-392	1	0.978
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NC_017496	Lactococcus lactis subsp. cremoris A76 plasmid pQA554, complete sequence	51343-51391	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NC_019431	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence	52876-52924	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP016745	Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence	34839-34887	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP016748	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1B, complete sequence	48105-48153	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NC_015864	Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence	18716-18764	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_AP018500	Lactococcus lactis subsp. cremoris strain C4 plasmid pC41, complete sequence	68517-68565	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP031540	Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107B, complete sequence	60041-60089	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP016729	Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4A, complete sequence	60044-60092	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP051521	Lactococcus lactis subsp. cremoris strain F plasmid pScrF75, complete sequence	28437-28485	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP016685	Lactococcus lactis subsp. cremoris strain 158 plasmid p158A, complete sequence	74944-74992	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP016734	Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06A, complete sequence	36753-36801	2	0.959
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP043526	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_02, complete sequence	6566-6614	3	0.939
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	92535-92583	3	0.939
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NC_019377	Lactococcus lactis subsp. cremoris plasmid pLP712, complete sequence	20786-20830	3	0.933
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NZ_CP028161	Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence	58195-58239	4	0.911
NZ_LT599053_1	1.2\|12026\|45\|NZ_LT599053\|PILER-CR	12026-12070	45	NC_015902	Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF50, complete sequence	1510-1554	4	0.911
NZ_LT599053_1	1.1\|11955\|49\|NZ_LT599053\|PILER-CR	11955-12003	49	NZ_CP028161	Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence	58129-58177	5	0.898

1. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_LT599053 (Lactococcus lactis subsp. lactis strain A12 plasmid pA12-4, complete sequence) position: , mismatch: 0, identity: 1.0

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
atctttgtttttattaatatacactatttttttattcttgtctagtaat	Protospacer
*************************************************

2. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NC_013657 (Lactococcus lactis subsp. lactis KF147 plasmid pKF147A, complete genome) position: , mismatch: 0, identity: 1.0

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtca	Protospacer
*********************************************

3. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_LT599053 (Lactococcus lactis subsp. lactis strain A12 plasmid pA12-4, complete sequence) position: , mismatch: 0, identity: 1.0

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtca	Protospacer
*********************************************

4. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP042409 (Lactococcus lactis strain CBA3619 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.98

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatacactatttttttattcttgtctagtaat	Protospacer
*.***********************************************

5. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NC_013657 (Lactococcus lactis subsp. lactis KF147 plasmid pKF147A, complete genome) position: , mismatch: 1, identity: 0.98

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatacactatttttttattcttgtctagtaat	Protospacer
*.***********************************************

6. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP016720 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11A, complete sequence) position: , mismatch: 1, identity: 0.98

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatacactatttttttattcttgtctagtaat	Protospacer
*.***********************************************

7. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP016726 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence) position: , mismatch: 1, identity: 0.98

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatacactatttttttattcttgtctagtaat	Protospacer
*.***********************************************

8. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NC_015902 (Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF50, complete sequence) position: , mismatch: 1, identity: 0.98

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatacactatttttttattcttgtctagtaat	Protospacer
*.***********************************************

9. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NC_009435 (Lactococcus lactis NCDO 1867 plasmid pGdh442, complete sequence) position: , mismatch: 1, identity: 0.98

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatacactatttttttattcttgtctagtaat	Protospacer
*.***********************************************

10. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NC_019377 (Lactococcus lactis subsp. cremoris plasmid pLP712, complete sequence) position: , mismatch: 1, identity: 0.98

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatacactatttttttattcttgtctagtaat	Protospacer
*.***********************************************

11. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NC_019431 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

12. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP016720 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11A, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcgacatttttacgtcacaagcaacatttttacggtca	Protospacer
*********.***********************************

13. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP043526 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_02, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

14. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP016726 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcgacatttttacgtcacaagcaacatttttacggtca	Protospacer
*********.***********************************

15. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP016745 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

16. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP016748 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1B, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

17. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NC_015864 (Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

18. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_AP018500 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC41, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

19. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP031540 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107B, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

20. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NC_017496 (Lactococcus lactis subsp. cremoris A76 plasmid pQA554, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

21. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

22. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP016729 (Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4A, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

23. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP051521 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF75, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

24. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP042409 (Lactococcus lactis strain CBA3619 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcgacatttttacgtcacaagcaacatttttacggtca	Protospacer
*********.***********************************

25. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NC_009435 (Lactococcus lactis NCDO 1867 plasmid pGdh442, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcgacatttttacgtcacaagcaacatttttacggtca	Protospacer
*********.***********************************

26. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP016685 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158A, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

27. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP016734 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06A, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttacagcaacatttttacgtcacaagcaacatttttacggtta	Protospacer
*******************************************.*

28. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP009055 (Lactococcus lactis subsp. lactis NCDO 2118 plasmid pNCDO2118, complete sequence) position: , mismatch: 1, identity: 0.978

atttacagcaaca-tttttacgtcacaagcaacatttttacggtca	CRISPR spacer
-tttacagcaacattttttacgtcacaagcaacatttttacggtca	Protospacer
 ************ ********************************

29. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NC_017496 (Lactococcus lactis subsp. cremoris A76 plasmid pQA554, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

30. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NC_019431 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

31. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP016745 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

32. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP016748 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1B, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

33. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NC_015864 (Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

34. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_AP018500 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC41, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

35. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP031540 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107B, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

36. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP016729 (Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4A, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

37. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP051521 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF75, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

38. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP016685 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158A, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

39. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP016734 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06A, complete sequence) position: , mismatch: 2, identity: 0.959

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctttgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.*******************.***************************

40. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP043526 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_02, complete sequence) position: , mismatch: 3, identity: 0.939

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctctgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.**.****************.***************************

41. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 3, identity: 0.939

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
acctctgtttttattaatatatactatttttttattcttgtctagtaat	Protospacer
*.**.****************.***************************

42. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NC_019377 (Lactococcus lactis subsp. cremoris plasmid pLP712, complete sequence) position: , mismatch: 3, identity: 0.933

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttgcagcaacatttttacgtcacgagcaacatttttacggtta	Protospacer
****.********************.*****************.*

43. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NZ_CP028161 (Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence) position: , mismatch: 4, identity: 0.911

atttacagcaacatttttacgtcacaagcaacatttttacggtca	CRISPR spacer
atttagagcaacatttttacgacacaagcaacatttttacgatta	Protospacer
***** *************** *******************.*.*

44. spacer 1.2|12026|45|NZ_LT599053|PILER-CR matches to NC_015902 (Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF50, complete sequence) position: , mismatch: 4, identity: 0.911

atttacagcaacatttttacgtcacaagcaaca-tttttacggtca	CRISPR spacer
atttacagcaacatttttacgccacaagcaacattttttacgatt-	Protospacer
*********************.*********** ********.*.

45. spacer 1.1|11955|49|NZ_LT599053|PILER-CR matches to NZ_CP028161 (Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence) position: , mismatch: 5, identity: 0.898

atctttgtttttattaatatacactatttttttattcttgtctagtaat	CRISPR spacer
actcttgtttttattaatatacactaatttttaattcttgtctagtaat	Protospacer
*...********************** ***** ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1727 : 66597

Streptococcus_phage(27.78%)

holin,bacteriocin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010890648.1\|1727_2408_+\|transposase	IS6-like element ISS1S family transposase	A0A1X9I6C6	Streptococcus_phage	8.5e-110	84.5
WP_068872868.1\|2749_2962_+	hypothetical protein	NA	NA	NA	NA
WP_021721733.1\|2987_3179_+	hypothetical protein	NA	NA	NA	NA
WP_021721732.1\|3598_4279_+	hypothetical protein	NA	NA	NA	NA
WP_068872869.1\|4284_4878_+	AAA family ATPase	A0A2H4UU96	Bodo_saltans_virus	9.0e-07	29.5
WP_021723421.1\|5223_6249_+	hypothetical protein	NA	NA	NA	NA
WP_021723420.1\|6394_7861_+	Y-family DNA polymerase	Q6DMX4	Streptococcus_phage	1.1e-122	51.1
WP_167349368.1\|7850_8018_+	hypothetical protein	A0A182BQ76	Lactococcus_phage	8.3e-11	75.6
WP_011915262.1\|8229_8958_-	ParB N-terminal domain-containing protein	Q4ZC37	Staphylococcus_virus	2.1e-05	27.2
WP_012898729.1\|8961_9720_-	AAA family ATPase	H7BUL8	unidentified_phage	5.5e-17	28.8
WP_014573541.1\|9729_9963_-	hypothetical protein	NA	NA	NA	NA
WP_011915264.1\|10474_11827_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA
WP_021723418.1\|13168_15031_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.2e-102	36.3
WP_012898751.1\|15732_15960_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_011915219.1\|16008_16554_+	DNA-binding protein	NA	NA	NA	NA
WP_021723416.1\|16639_17329_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_021723414.1\|17690_17882_+	hypothetical protein	NA	NA	NA	NA
WP_003140242.1\|17933_18110_+	hypothetical protein	NA	NA	NA	NA
WP_021723411.1\|20070_20184_-\|bacteriocin	lactococcin family bacteriocin	NA	NA	NA	NA
WP_021723409.1\|20932_21637_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_017865277.1\|21747_21897_-\|bacteriocin	lactococcin family bacteriocin	NA	NA	NA	NA
WP_021723408.1\|22073_22754_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.0e-110	85.0
WP_021723406.1\|23293_23596_-	hypothetical protein	NA	NA	NA	NA
WP_021723405.1\|23588_23864_-	DUF2089 family protein	NA	NA	NA	NA
WP_021723404.1\|24093_24438_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_080613289.1\|25591_25768_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_011915229.1\|27406_28012_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	8.8e-50	52.7
WP_011915230.1\|28027_28951_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_021723403.1\|29042_29264_+	hypothetical protein	NA	NA	NA	NA
WP_021723402.1\|29298_29970_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_021723401.1\|30127_30694_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_158616516.1\|30733_30895_+	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_021723400.1\|30929_33086_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.3e-241	57.8
WP_021723399.1\|33095_34049_+	ribonucleotide-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	6.4e-31	34.5
WP_011915236.1\|34259_35210_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	5.7e-96	54.4
WP_003129983.1\|35482_35860_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_095586744.1\|35947_37095_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-46	41.0
WP_017865282.1\|38503_38608_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_021723396.1\|39000_39222_-	hypothetical protein	NA	NA	NA	NA
WP_021723393.1\|40118_40403_+	hypothetical protein	NA	NA	NA	NA
WP_021723392.1\|40612_40984_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_021723391.1\|40986_42504_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_032947053.1\|43695_44142_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_021723385.1\|45700_46351_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	5.8e-23	32.0
WP_003572050.1\|46347_47103_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_021722009.1\|49311_49413_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_021466737.1\|50386_50797_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011915260.1\|51272_52022_-	nicotinamide mononucleotide transporter	A0A2K9VCL6	Lactobacillus_phage	3.6e-53	45.6
WP_011834703.1\|52336_52891_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.8e-41	49.7
WP_021722021.1\|53162_53309_+	hypothetical protein	NA	NA	NA	NA
WP_068872862.1\|53769_54624_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_081303011.1\|54798_56463_+	MFS transporter	NA	NA	NA	NA
WP_081303012.1\|56490_57369_+	galactokinase	NA	NA	NA	NA
WP_021722018.1\|57454_59632_+	alpha-galactosidase	NA	NA	NA	NA
WP_021722017.1\|59728_61180_+	sucrose phosphorylase	NA	NA	NA	NA
WP_155242615.1\|62907_63575_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.6e-106	84.8
WP_068872863.1\|63678_66597_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.2e-133	30.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT599052

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LT599049

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_LT599053

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection