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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT576033 Propionibacterium freudenreichii isolate PFRJS4 chromosome I 5 crisprs DEDDh,csa3,cas3,WYL,DinG,cas2,cas1,csb3,csb2gr5 0 18 7 0

Results visualization

1. NZ_LT576033
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT576033_1 1818598-1819215 Unclear NA
8 spacers
cas2,cas1,csb3,cas3,csb2gr5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT576033_2 1823162-1823697 Unclear NA
7 spacers
cas2,cas1,csb3,cas3,csb2gr5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT576033_3 1825170-1827746 Unclear NA
35 spacers
cas2,cas1,csb3,cas3,csb2gr5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT576033_4 2248665-2248829 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT576033_5 2506497-2506604 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT576033_3 3.6|1825566|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1825566-1825603 38 KU984979 Propionibacterium phage PFR1, complete genome 8125-8162 0 1.0
NZ_LT576033_3 3.6|1825566|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1825566-1825603 38 NC_031108 Propionibacterium phage PFR2, complete genome 8125-8162 0 1.0
NZ_LT576033_3 3.12|1826004|39|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826004-1826042 39 KU984979 Propionibacterium phage PFR1, complete genome 5231-5269 0 1.0
NZ_LT576033_3 3.12|1826004|39|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826004-1826042 39 NC_031108 Propionibacterium phage PFR2, complete genome 5231-5269 0 1.0
NZ_LT576033_3 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826437-1826471 35 KX620751 Propionibacterium phage Doucette, complete genome 11341-11375 0 1.0
NZ_LT576033_3 3.20|1826581|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826581-1826618 38 KX620751 Propionibacterium phage Doucette, complete genome 19499-19536 0 1.0
NZ_LT576033_3 3.20|1826581|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826581-1826618 38 NC_041894 Propionibacterium phage E6, complete genome 19505-19542 0 1.0
NZ_LT576033_3 3.35|1827675|36|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1827675-1827710 36 NC_041894 Propionibacterium phage E6, complete genome 26661-26696 0 1.0
NZ_LT576033_3 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826437-1826471 35 NC_041894 Propionibacterium phage E6, complete genome 11389-11423 1 0.971
NZ_LT576033_3 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826655-1826694 40 KX620751 Propionibacterium phage Doucette, complete genome 27745-27784 1 0.975
NZ_LT576033_3 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826655-1826694 40 NC_041891 Propionibacterium phage B22, complete genome 26367-26406 1 0.975
NZ_LT576033_3 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826655-1826694 40 NC_041894 Propionibacterium phage E6, complete genome 29183-29222 1 0.975
NZ_LT576033_4 4.3|2248785|21|NZ_LT576033|CRISPRCasFinder 2248785-2248805 21 NZ_CP035418 Leisingera sp. NJS204 plasmid unnamed1, complete sequence 24862-24882 1 0.952
NZ_LT576033_4 4.3|2248785|21|NZ_LT576033|CRISPRCasFinder 2248785-2248805 21 NZ_CP041156 Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence 73773-73793 1 0.952
NZ_LT576033_4 4.3|2248785|21|NZ_LT576033|CRISPRCasFinder 2248785-2248805 21 NZ_CP038237 Leisingera sp. NJS201 plasmid unnamed3, complete sequence 106383-106403 1 0.952
NZ_LT576033_1 1.8|1819152|34|NZ_LT576033|PILER-CR 1819152-1819185 34 NC_041894 Propionibacterium phage E6, complete genome 13018-13051 2 0.941
NZ_LT576033_1 1.16|1819146|34|NZ_LT576033|CRISPRCasFinder,CRT 1819146-1819179 34 NC_041894 Propionibacterium phage E6, complete genome 13018-13051 2 0.941
NZ_LT576033_3 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1825930-1825967 38 NC_041891 Propionibacterium phage B22, complete genome 34063-34100 2 0.947
NZ_LT576033_3 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1825930-1825967 38 NC_041894 Propionibacterium phage E6, complete genome 33563-33600 2 0.947
NZ_LT576033_3 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1825930-1825967 38 NC_041890 Propionibacterium phage Anatole, complete genome 30635-30672 2 0.947
NZ_LT576033_3 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1825930-1825967 38 KX620752 Propionibacterium phage E1, complete genome 30635-30672 2 0.947
NZ_LT576033_3 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1825930-1825967 38 NC_041892 Propionibacterium phage B3, complete genome 31298-31335 2 0.947
NZ_LT576033_3 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826437-1826471 35 KX620754 Propionibacterium phage G4, complete genome 11331-11365 2 0.943
NZ_LT576033_3 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826655-1826694 40 KX620754 Propionibacterium phage G4, complete genome 26717-26756 2 0.95
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 NZ_CP039965 Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence 47914-47937 2 0.917
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 NZ_AP017656 Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence 121074-121097 2 0.917
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 NZ_CP018821 Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence 296836-296859 2 0.917
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 MH444512 Bifidobacterium phage Willi, complete genome 3528-3551 2 0.917
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 MK932884 Bifidobacterium phage PMBT6, complete genome 3528-3551 2 0.917
NZ_LT576033_3 3.23|1826802|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826802-1826839 38 KU984979 Propionibacterium phage PFR1, complete genome 2511-2548 3 0.921
NZ_LT576033_3 3.23|1826802|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826802-1826839 38 NC_031108 Propionibacterium phage PFR2, complete genome 2511-2548 3 0.921
NZ_LT576033_4 4.1|2248689|24|NZ_LT576033|CRISPRCasFinder 2248689-2248712 24 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 1387809-1387832 3 0.875
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 499907-499930 3 0.875
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 NZ_AP014707 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence 49875-49898 3 0.875
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 MT110073 Stenotrophomonas phage vB_SmaS_DLP_3, complete genome 32428-32451 3 0.875
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 NZ_CP005085 Sphingobium sp. TKS plasmid pTK1, complete sequence 71885-71908 3 0.875
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 KC170282 Uncultured bacterium plasmid pMBUI6, complete sequence 3102-3125 3 0.875
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 GQ919031 Streptomyces phage ZL12, complete genome 49155-49178 3 0.875
NZ_LT576033_1 1.6|1819007|35|NZ_LT576033|PILER-CR 1819007-1819041 35 KU984979 Propionibacterium phage PFR1, complete genome 21334-21368 4 0.886
NZ_LT576033_1 1.6|1819007|35|NZ_LT576033|PILER-CR 1819007-1819041 35 NC_031108 Propionibacterium phage PFR2, complete genome 22903-22937 4 0.886
NZ_LT576033_1 1.14|1819002|35|NZ_LT576033|CRISPRCasFinder,CRT 1819002-1819036 35 KU984979 Propionibacterium phage PFR1, complete genome 21334-21368 4 0.886
NZ_LT576033_1 1.14|1819002|35|NZ_LT576033|CRISPRCasFinder,CRT 1819002-1819036 35 NC_031108 Propionibacterium phage PFR2, complete genome 22903-22937 4 0.886
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 NZ_CP054842 Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence 106401-106424 4 0.833
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 NZ_CP025613 Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence 415999-416022 4 0.833
NZ_LT576033_4 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder 2248737-2248760 24 MT939492 Xanthomonas phage Xoo-sp14, complete genome 230325-230348 4 0.833
NZ_LT576033_3 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826655-1826694 40 KU984979 Propionibacterium phage PFR1, complete genome 26564-26603 5 0.875
NZ_LT576033_3 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826655-1826694 40 NC_031108 Propionibacterium phage PFR2, complete genome 28133-28172 5 0.875
NZ_LT576033_3 3.26|1827024|34|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1827024-1827057 34 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 1408863-1408896 7 0.794
NZ_LT576033_3 3.13|1826079|37|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826079-1826115 37 KU984979 Propionibacterium phage PFR1, complete genome 26469-26505 9 0.757
NZ_LT576033_3 3.13|1826079|37|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826079-1826115 37 NC_031108 Propionibacterium phage PFR2, complete genome 28038-28074 9 0.757
NZ_LT576033_3 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826437-1826471 35 NZ_CP049158 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence 439457-439491 10 0.714
NZ_LT576033_3 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR 1826437-1826471 35 NZ_CP049318 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence 438666-438700 10 0.714
NZ_LT576033_5 5.1|2506534|34|NZ_LT576033|CRISPRCasFinder 2506534-2506567 34 CP000663 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence 104107-104140 10 0.706
NZ_LT576033_5 5.1|2506534|34|NZ_LT576033|CRISPRCasFinder 2506534-2506567 34 NZ_CP031752 Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence 50213-50246 10 0.706

1. spacer 3.6|1825566|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 0, identity: 1.0

atgcgcgcattggcgcagaacttgaaatgcttggacgt	CRISPR spacer
atgcgcgcattggcgcagaacttgaaatgcttggacgt	Protospacer
**************************************

2. spacer 3.6|1825566|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 0, identity: 1.0

atgcgcgcattggcgcagaacttgaaatgcttggacgt	CRISPR spacer
atgcgcgcattggcgcagaacttgaaatgcttggacgt	Protospacer
**************************************

3. spacer 3.12|1826004|39|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 0, identity: 1.0

tccccgcacgatcgccggaatggtcaccgcttcggatgc	CRISPR spacer
tccccgcacgatcgccggaatggtcaccgcttcggatgc	Protospacer
***************************************

4. spacer 3.12|1826004|39|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 0, identity: 1.0

tccccgcacgatcgccggaatggtcaccgcttcggatgc	CRISPR spacer
tccccgcacgatcgccggaatggtcaccgcttcggatgc	Protospacer
***************************************

5. spacer 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 0, identity: 1.0

gcgatctcggcgctggtgggggcgttctcgattgc	CRISPR spacer
gcgatctcggcgctggtgggggcgttctcgattgc	Protospacer
***********************************

6. spacer 3.20|1826581|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 0, identity: 1.0

gcgagccaatcgacatcgcccggaaggttagcgagaaa	CRISPR spacer
gcgagccaatcgacatcgcccggaaggttagcgagaaa	Protospacer
**************************************

7. spacer 3.20|1826581|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 0, identity: 1.0

gcgagccaatcgacatcgcccggaaggttagcgagaaa	CRISPR spacer
gcgagccaatcgacatcgcccggaaggttagcgagaaa	Protospacer
**************************************

8. spacer 3.35|1827675|36|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 0, identity: 1.0

attgccattcgctgcatcccgccaagggtgtcggta	CRISPR spacer
attgccattcgctgcatcccgccaagggtgtcggta	Protospacer
************************************

9. spacer 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 1, identity: 0.971

gcgatctcggcgctggtgggggcgttctcgattgc	CRISPR spacer
gcgatctcggcgctggtgggggccttctcgattgc	Protospacer
*********************** ***********

10. spacer 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 1, identity: 0.975

cggcatcatgtgatcacccgacccatgacctgctcccacg	CRISPR spacer
cggcatcatgcgatcacccgacccatgacctgctcccacg	Protospacer
**********.*****************************

11. spacer 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 1, identity: 0.975

cggcatcatgtgatcacccgacccatgacctgctcccacg	CRISPR spacer
cggcatcatgcgatcacccgacccatgacctgctcccacg	Protospacer
**********.*****************************

12. spacer 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 1, identity: 0.975

cggcatcatgtgatcacccgacccatgacctgctcccacg	CRISPR spacer
cggcatcatgcgatcacccgacccatgacctgctcccacg	Protospacer
**********.*****************************

13. spacer 4.3|2248785|21|NZ_LT576033|CRISPRCasFinder matches to NZ_CP035418 (Leisingera sp. NJS204 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgtcgccttgcgggtggtgcg	CRISPR spacer
cgtcaccttgcgggtggtgcg	Protospacer
****.****************

14. spacer 4.3|2248785|21|NZ_LT576033|CRISPRCasFinder matches to NZ_CP041156 (Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgtcgccttgcgggtggtgcg	CRISPR spacer
cgtcaccttgcgggtggtgcg	Protospacer
****.****************

15. spacer 4.3|2248785|21|NZ_LT576033|CRISPRCasFinder matches to NZ_CP038237 (Leisingera sp. NJS201 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

cgtcgccttgcgggtggtgcg	CRISPR spacer
cgtcaccttgcgggtggtgcg	Protospacer
****.****************

16. spacer 1.8|1819152|34|NZ_LT576033|PILER-CR matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 2, identity: 0.941

ccgatcctgtgggccgaggccggacctgaagcct	CRISPR spacer
ccgatcctgtgggccgaggccggcccggaagcct	Protospacer
*********************** ** *******

17. spacer 1.16|1819146|34|NZ_LT576033|CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 2, identity: 0.941

ccgatcctgtgggccgaggccggacctgaagcct	CRISPR spacer
ccgatcctgtgggccgaggccggcccggaagcct	Protospacer
*********************** ** *******

18. spacer 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 2, identity: 0.947

tttgcttactcagggcttgtctcttttggtcgttttgc	CRISPR spacer
tttgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
*******.*****.************************

19. spacer 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 2, identity: 0.947

tttgcttactcagggcttgtctcttttggtcgttttgc	CRISPR spacer
tttgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
*******.*****.************************

20. spacer 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 2, identity: 0.947

tttgcttactcagggcttgtctcttttggtcgttttgc	CRISPR spacer
tttgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
*******.*****.************************

21. spacer 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 2, identity: 0.947

tttgcttactcagggcttgtctcttttggtcgttttgc	CRISPR spacer
tttgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
*******.*****.************************

22. spacer 3.11|1825930|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 2, identity: 0.947

tttgcttactcagggcttgtctcttttggtcgttttgc	CRISPR spacer
tttgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
*******.*****.************************

23. spacer 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 2, identity: 0.943

gcgatctcggcgctggtgggggcgttctcgattgc	CRISPR spacer
gctgtctcggcgctggtgggggcgttctcgattgc	Protospacer
** .*******************************

24. spacer 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 2, identity: 0.95

cggcatcatgtgatcacccgacccatgacctgctcccacg	CRISPR spacer
cggcatcatgcgatcacccggcccatgacctgctcccacg	Protospacer
**********.*********.*******************

25. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgcaggcttcttggccgccggttt	Protospacer
*** *****************.**

26. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgcgggcttcttggcggccggctt	Protospacer
*** *********** ********

27. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to NZ_CP018821 (Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgcgggcttcttggcggccggctt	Protospacer
*** *********** ********

28. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to MH444512 (Bifidobacterium phage Willi, complete genome) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgccggcttcttttccgccggctt	Protospacer
************  **********

29. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to MK932884 (Bifidobacterium phage PMBT6, complete genome) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgccggcttcttttccgccggctt	Protospacer
************  **********

30. spacer 3.23|1826802|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 3, identity: 0.921

ggtgagaatcccgtcgcccgtaccgggcgcgagcgtga	CRISPR spacer
cgtcagaatcccgtcgcccgtaccgggcgcgagcgtaa	Protospacer
 ** ********************************.*

31. spacer 3.23|1826802|38|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 3, identity: 0.921

ggtgagaatcccgtcgcccgtaccgggcgcgagcgtga	CRISPR spacer
cgtcagaatcccgtcgcccgtaccgggcgcgagcgtaa	Protospacer
 ** ********************************.*

32. spacer 4.1|2248689|24|NZ_LT576033|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttggccgtggacgccgt	CRISPR spacer
tgccggcttcgccgtcgacgccga	Protospacer
********* ***** ******* 

33. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
cgccggcttatttgccgccggctt	Protospacer
.******** ** ***********

34. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to NZ_AP014707 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
cgccggcttctcggtcgccggctt	Protospacer
.**********.**.*********

35. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
ggccggcttcttggtcgccgcctt	Protospacer
 *************.***** ***

36. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
cgccggcttcttgaccgctggctt	Protospacer
.************.****.*****

37. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to KC170282 (Uncultured bacterium plasmid pMBUI6, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
agccggcttcttggctgcgggctt	Protospacer
 **************.** *****

38. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
ggccggcttcttggccgcggtctt	Protospacer
 ***************** * ***

39. spacer 1.6|1819007|35|NZ_LT576033|PILER-CR matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 4, identity: 0.886

ctgtcgaaatggcgtgaggtgagcggcggtgcagg	CRISPR spacer
ctgtcgaaatggcgcgaggtgagcggcggcgtcgg	Protospacer
**************.**************.*. **

40. spacer 1.6|1819007|35|NZ_LT576033|PILER-CR matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 4, identity: 0.886

ctgtcgaaatggcgtgaggtgagcggcggtgcagg	CRISPR spacer
ctgtcgaaatggcgcgaggtgagcggcggcgtcgg	Protospacer
**************.**************.*. **

41. spacer 1.14|1819002|35|NZ_LT576033|CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 4, identity: 0.886

ctgtcgaaatggcgtgaggtgagcggcggtgcagg	CRISPR spacer
ctgtcgaaatggcgcgaggtgagcggcggcgtcgg	Protospacer
**************.**************.*. **

42. spacer 1.14|1819002|35|NZ_LT576033|CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 4, identity: 0.886

ctgtcgaaatggcgtgaggtgagcggcggtgcagg	CRISPR spacer
ctgtcgaaatggcgcgaggtgagcggcggcgtcgg	Protospacer
**************.**************.*. **

43. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to NZ_CP054842 (Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.833

tgccggcttcttggccgccggctt	CRISPR spacer
ggccggcttcttggccgccgaatc	Protospacer
 *******************. *.

44. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.833

tgccggcttcttggccgccggctt	CRISPR spacer
aaccggcttcttggccggcggctc	Protospacer
 .*************** *****.

45. spacer 4.2|2248737|24|NZ_LT576033|CRISPRCasFinder matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 4, identity: 0.833

tgccggcttcttggccgccggctt	CRISPR spacer
cagcggcttcttggcagccggctt	Protospacer
.. ************ ********

46. spacer 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 5, identity: 0.875

cggcatcatgtgatcacccgacccatgacctgctcccacg	CRISPR spacer
cgcgctcatgcgatcacccgacccacgacctgctcccacg	Protospacer
**   *****.**************.**************

47. spacer 3.21|1826655|40|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 5, identity: 0.875

cggcatcatgtgatcacccgacccatgacctgctcccacg	CRISPR spacer
cgcgctcatgcgatcacccgacccacgacctgctcccacg	Protospacer
**   *****.**************.**************

48. spacer 3.26|1827024|34|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.794

--ctgtgcagtccgtctccaccgtggaagccgacaa	CRISPR spacer
agctctgc--cccgcctccaccgtggaagccgccac	Protospacer
  ** ***  .***.***************** ** 

49. spacer 3.13|1826079|37|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 9, identity: 0.757

ttatggcgctgcttgggacgccgctcagatcgccgct	CRISPR spacer
tcagctcgctgcttggtacgccgctcagaacgccatc	Protospacer
*.*   ********** ************ ****...

50. spacer 3.13|1826079|37|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 9, identity: 0.757

ttatggcgctgcttgggacgccgctcagatcgccgct	CRISPR spacer
tcagctcgctgcttggtacgccgctcagaacgccatc	Protospacer
*.*   ********** ************ ****...

51. spacer 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 10, identity: 0.714

gcgatctcggcgctggtgggggcgttctcgattgc	CRISPR spacer
gcgatttcggcgctggtggcggcgtcgtagccctt	Protospacer
*****.************* *****. * * .. .

52. spacer 3.18|1826437|35|NZ_LT576033|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 10, identity: 0.714

gcgatctcggcgctggtgggggcgttctcgattgc	CRISPR spacer
gcgatttcggcgctggtggcggcgtcgtagccctt	Protospacer
*****.************* *****. * * .. .

53. spacer 5.1|2506534|34|NZ_LT576033|CRISPRCasFinder matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 10, identity: 0.706

tcaaggagcggcgtggagcccgccttcgctccag	CRISPR spacer
ctcgaaaccggggtggagccggccttcgctccgg	Protospacer
.. ...* *** ******** ***********.*

54. spacer 5.1|2506534|34|NZ_LT576033|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 10, identity: 0.706

tcaaggagcggcgtggagcccgccttcgctccag	CRISPR spacer
ctcgaaaccggggtggagccggccttcgctccgg	Protospacer
.. ...* *** ******** ***********.*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 13249 : 70235 48 Bacillus_virus(18.18%) transposase NA
DBSCAN-SWA_2 97991 : 164453 48 Mycobacterium_phage(30.77%) tRNA,transposase NA
DBSCAN-SWA_3 375715 : 434507 50 Mycobacterium_phage(30.0%) transposase NA
DBSCAN-SWA_4 1255325 : 1323313 58 Streptococcus_phage(23.08%) protease,integrase,capsid,tRNA attL 1250803:1250824|attR 1330609:1330630
DBSCAN-SWA_5 1805848 : 1889860 59 Mycobacterium_phage(28.57%) transposase NA
DBSCAN-SWA_6 1935232 : 2000507 51 Tupanvirus(25.0%) transposase,tRNA NA
DBSCAN-SWA_7 2444998 : 2491870 41 Mycobacterium_phage(38.46%) holin,integrase,transposase attL 2447834:2447893|attR 2465711:2466952
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage