CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053068	Mycobacterium avium subsp. paratuberculosis strain DSM 44135 chromosome, complete genome	9 crisprs	DinG,csa3,DEDDh,cas4,WYL,cas3	2	4	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053068_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053068_1

406195-406285

Orphan

Consensus_repeat	Method
CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP053068_1

>merge|NZ_CP053068|1|406195-406285|CRISPRCasFinder
CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCTGGGTGGGATGGCCCGCCTCCTCCTCCCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT

>NZ_CP053068|1|1|406195-406285|CRISPRCasFinder
CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT	GGGTGGGATGGCCCGCCTCCTCCTC
CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053068.1\|WP_003874504.1\|414370_414724_-\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
NZ_CP053068.1\|WP_003878991.1\|396099_397083_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|184242
NZ_CP053068.1\|WP_003878986.1\|401659_402475_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_CP053068.1\|WP_019305894.1\|406297_407713_+\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112
NZ_CP053068.1\|WP_003878975.1\|411615_412752_+\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_CP053068.1\|WP_003878980.1\|409520_410393_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211332
NZ_CP053068.1\|WP_003874506.1\|415829_416582_-\|Fpg/Nei-family-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223344
NZ_CP053068.1\|WP_010949952.1\|416584_421225_-\|ATP-dependent-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|137505
NZ_CP053068.1\|WP_003878981.1\|407769_409524_+\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NZ_CP053068.1\|WP_003878983.1\|404475_405654_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
NZ_CP053068.1\|WP_003874486.1\|395073_396081_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|184242
NZ_CP053068.1\|WP_003878985.1\|402613_403231_+\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|366455
NZ_CP053068.1\|WP_003878984.1\|403276_404479_+\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349921
NZ_CP053068.1\|WP_015632573.1\|410432_410891_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_170936881.1\|398454_399327_-\|acid-phosphatase	unknown	unknown	gnl\|CDD\|309350
NZ_CP053068.1\|WP_010949958.1\|399449_400223_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP053068.1\|WP_010949959.1\|397115_398429_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215601
NZ_CP053068.1\|WP_003874501.1\|411096_411384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003874505.1\|414915_415833_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|226040
NZ_CP053068.1\|WP_003874496.1\|405676_406144_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|372719

Protein	Function_ID	Function_description	E-value
NZ_CP053068.1\|WP_003874504.1\|414370_414724_-\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	7.11334e-25
NZ_CP053068.1\|WP_003878991.1\|396099_397083_-\|VWA-domain-containing-protein	gnl\|CDD\|184242	PRK13685, PRK13685, hypothetical protein; Provisional.	1.49442e-179
NZ_CP053068.1\|WP_003878986.1\|401659_402475_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	3.82935e-132
NZ_CP053068.1\|WP_019305894.1\|406297_407713_+\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0
NZ_CP053068.1\|WP_003878975.1\|411615_412752_+\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.96273e-51
NZ_CP053068.1\|WP_003878980.1\|409520_410393_+\|hypothetical-protein	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	4.53932e-117
NZ_CP053068.1\|WP_003874506.1\|415829_416582_-\|Fpg/Nei-family-DNA-glycosylase	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	8.44944e-79
NZ_CP053068.1\|WP_010949952.1\|416584_421225_-\|ATP-dependent-helicase	gnl\|CDD\|137505	PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional.	0
NZ_CP053068.1\|WP_003878981.1\|407769_409524_+\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	0
NZ_CP053068.1\|WP_003878983.1\|404475_405654_+\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP053068.1\|WP_003874486.1\|395073_396081_+\|VWA-domain-containing-protein	gnl\|CDD\|184242	PRK13685, PRK13685, hypothetical protein; Provisional.	0
NZ_CP053068.1\|WP_003878985.1\|402613_403231_+\|cutinase-family-protein	gnl\|CDD\|366455	pfam01083, Cutinase, Cutinase.	1.00846e-37
NZ_CP053068.1\|WP_003878984.1\|403276_404479_+\|M20-family-metallopeptidase	gnl\|CDD\|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	2.70707e-153
NZ_CP053068.1\|WP_170936881.1\|398454_399327_-\|acid-phosphatase	gnl\|CDD\|309350	pfam04185, Phosphoesterase, Phosphoesterase family. This family includes both bacterial phospholipase C enzymes EC:3.1.4.3, but also eukaryotic acid phosphatases EC:3.1.3.2.	2.93934e-42
NZ_CP053068.1\|WP_010949958.1\|399449_400223_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	2.5881e-108
NZ_CP053068.1\|WP_010949959.1\|397115_398429_-\|hypothetical-protein	gnl\|CDD\|215601	PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional.	0.000437843
NZ_CP053068.1\|WP_003874505.1\|414915_415833_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	8.75232e-96
NZ_CP053068.1\|WP_003874496.1\|405676_406144_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	2.35863e-33

>NZ_CP053068.1|WP_003874496.1|405676_406144_-|gamma-glutamylcyclotransferase
MPLYAAYGSNMDPEQMLKRAPHSPMAGTGWLHGWRLTFGGEDIGWEGALATVVEDPGSKVFVVLYDMTPADEKNLDRWEGSEFGVHKKIRCRVDRISSDTTTDPVLAWLYVLDAWEGGLPSARYLGVMADAAEIAGAPADYVHDLRTRPARNIGP
>NZ_CP053068.1|WP_003878983.1|404475_405654_+|amidohydrolase
MSLADAATSWLAAHNQDLIEWRRHIHRYPELGRQEYATTQFVAERLAEAGLNPKVLPGGTGLTCDLGPEHEPRIALRADMDALPMAERTGAPYASTMPNVAHACGHDAHTAILLGTALVLASVPELPVGVRLIFQAAEELMPGGAIDAIAAGAITGVSRIFALHCDPRLEVGQIAVRHGPITSAADQIEITLYSPGGHTSRPHLTADLVYGLGTLITGLPGVLSRRIEPRNGTVLVWGAVNAGVAANAIPQTGVLAGTVRTASRQTWVGLEEVIRETVSGLLAPLGIEHTLQYRRGVPPVVNEDVSTRILTHAIEALGPDALADTRQSGGGEDFSWYLEEIPGAMARLGVWPGVGPQLDLHQPTFNLDERALAIGVRVMANIVEQSALFQVF
>NZ_CP053068.1|WP_003878984.1|403276_404479_+|M20-family-metallopeptidase
MPPVGSDSPLDSVEDVVRRRGADLVELSHAIHAEPELAFAEHRSCAKAQALVAERGFEITAAAGGLDTAFRADFGSGQLTIGVCAEYDALPEIGHACGHNIIAASAVGTALALVEVADDLGLRVALVGTPAEEAGGGKALLLKAGVFDDISAAVMLHPGPADIAAARSLALSEAIVRYRGKESHAAVAPHLGVNALDAVTVAQVAVGLLRQQLAPGQLVHGIVTDGGQAVNVIPGHASLQYAMRAVESDSLRELEGRMYACFAAGAMAAGCEYEIDNPAPAYDELKPDAWLANIFREEMCRLGRQPVAPEYEAALPMGSTDMGNVTQALPGIHPVVGVESGGAMVHQRAFADAAAGPSADRAVIEGAIMLARTVVALAQTPAERDRVLAAHERRRGGAHP
>NZ_CP053068.1|WP_003878985.1|402613_403231_+|cutinase-family-protein
MSVVAITCGPAPRAAADGCPDVQLIFARGTAEPPGLGAVGDALFAALQPALGNRNVDAYAVNYPASYNFLTTADGANDARDHIAEMVDRCPSTRLVLGGFSQGAAAVSMLAGVPPVGQRIGNFGSAPPLDPGLASKIAAVAVFGNPGNRFNTPLSTTGAFAGRAIDLCSDGDPVCVVGGRDRDAHHVYEDPPYPAQAAGFIAGRV
>NZ_CP053068.1|WP_003878986.1|401659_402475_-|purine-nucleoside-phosphorylase
MAETPSNPGELARQAAAVIGERTGVAEHDVAIVLGSGWSPAVAALGTPTAVLPQAELPGFRPPTAVGHTGELVSMRIGEHRVLVLVGRIHAYEGHDLCHVVHPVRAACAAGVRAVVLTNAAGGLRPDLAVGEPVLISDHLNLTGRSPLVGPQFVDLTDAYSPRLRELARQADPTLAEGVYAGLPGPHYETPAEIRMLRTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGISGEPLSHTEVLAAGAASATRMGALLALILCQLPRF
>NZ_CP053068.1|WP_010949958.1|399449_400223_+|uracil-phosphoribosyltransferase
MDVCVIDHPLAAARLTVLRDERTDTAGFRAALRDLTLMLVYEASRDAPRKSVRIRTPVAAAAGTRLVNPPLLVPVLRAGLGMVDPAQAALPEAEVGFVGVARDEQTHRPVPYLAALPDKLAGRPVMVLDPMLATGGSMAHTLGLLQRRGATDITVLCVVAAPEGLAAVGETAPDARVFTAAVDKGLNKAAYIVPGLGDAGDRQFGPNLFTSSAPSRPEAPAGRGRAAAKTPGRRSARSESPSSTSPSARSRKAAPPA
>NZ_CP053068.1|WP_170936881.1|398454_399327_-|acid-phosphatase
MIGGAYRSLRLLGAVAAVALAASPLTPRTSLAAAAIPQPSHIVIVVEENRSESGIIGNKSAPFITALAASGANMTQSFAETHPSEPNYLALFAGNTFGVTKDLCPVNAGAAPNLGSELLAAGYTFVGYAEGLPSPGSPVCSAGKYARKHVPWANFTNVPAASSLPFSAFPMGNYASLPTVSFVIPNNDNNMHDGSIAQADSWLNRQLSGYANWALANNSLLIVTFDEDDNSNVGASRNQIPTVFYGAHVRPGNYAEQINHYNVLATLEQMYGLPKTGYAAGAAPITDIWG
>NZ_CP053068.1|WP_010949959.1|397115_398429_-|hypothetical-protein
MAADLVPIRLSLSAGDRYTVWAPRWRDSGDEWEAFLGKDEDLYVFSSVADLVAFVRSDEDNDLTDHPAWTRLRTAHAHKFEPAKDKQFDLVAVEELVSEKPTEESVTALAGVLAIVSSIGSVCELAAVSKFFNGNPALGTVSGGIEHFTGKAGAKRWHAIAEIIARGWDDVLGAIDDIATTPEVDEALSAKAEDELAEERDDEETDEADEAAEAPADATEPDEEALEADEADGEPDDDADETETRAAGDTVVLGGDKDFWLQVGIDPIRIITGSGTFYTLRCYLDDQPIFLGRNGRISVFTSERALARYLADEHDHDLADLSTYDDIRTAATDGSLEVEITDDNIYVLSGLADDLADGPDAVDRDQLELAVEVLRDIGDYSEDSTVDKALEPGRPLGKLVAAVLEPGSVAKPSPPYAAAVREWEKLEQFVDGRLRRG
>NZ_CP053068.1|WP_003878991.1|396099_397083_-|VWA-domain-containing-protein
MSLPGIGPLPLYGFQRPGMLLFGLVPLALLALYLVVQARRRRRLHRYTDAPVAQSPWRHLPIAVSLLSLVLLTIALATPTHDMRIPRNRAVIMLVIDMSQSMRATDVEPNRLKAAEQAASQFASQLTPGINLGLVGFAGTPYLLVPPTPQHQATIDALKKLDFADSTATGEAIFTALHAISATAVAGGDTPPPARIVLLSDGGENKPSNPSDPHDGVYTAARLAKDEGVPISTITFGTKGGEIEMDGQKVAVPVSTDQMKMVAKLSGGQSYTATNLGELQKSYNAIENEIGYRTVPGPGSAGWLRLGVLTALIATALALLINRRLPT
>NZ_CP053068.1|WP_003874486.1|395073_396081_+|VWA-domain-containing-protein
MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPHPSRWRHVPTILLATSLVLLTTAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLAAAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAAVKAGIDSLQPAPKTATGEGIFTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQISTISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGYETVKGDASMAWMLLGAVVLAGAVLAGLLLNRRLPA
>NZ_CP053068.1|WP_019305894.1|406297_407713_+|NAD(P)H-quinone-dehydrogenase
MVTRIVILGGGPAGYEAALVAASSHPDSTHVTVIDSEGIGGAAVLDDCVPSKTFIASTWLRTELRRAPRLGFEIDIDDAKISLPQIHARVKQLATEQSADITEQLLGVGVHVVAGRGELIDPTPGLARHRIKATAPDGSSSEYEADVVLIATGASPRILPSAQPDGERILTWRQLYNLDALPDHLIVVGSGVTGAEFVHAYTELGVPVTVVASRDRVLPYEDADAALVLEEAFSERGVQLVKNARAQSVTRTPDGVLVTLTDGRTVAGSHALMTIGSVPNTAGLGLERVGIELGRGGYLTVDRVSRTSVPGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQTMIDDGSVSARTIMLPLRTNARAKMSGLRQGFVKVFCRKSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLMAHDDLD
>NZ_CP053068.1|WP_003878981.1|407769_409524_+|glycerol-3-phosphate-dehydrogenase/oxidase
MSDPIHALGEPGSPASALGPRQRAAAWDRLGAEQFDVVVIGGGVVGSGCALDAATRGLKVALVEARDFASGTSSRSSKMFHGGLRYLEQLEFGLVREALYERELSLTTLAPHLVKPMPFLFPLTNRLWERPYIAAGIFLYDRLGGAKSVPAQKHLTRAGALRLCPGLKRSALIGGIRYYDTIVDDARHTLTVARTAAHYGVVVRNSTQVVALLREGDRVTGVRVRDSEDGSVTEVRGHVVVNATGVWTDEIQALSKQRGRFQVRASKGVHVVVPRDRIVSDVAIILRTEKSVMFVIPWGSHWIIGTTDTDWDLDLAHPAATKADIDYILSTVNTVLAIPLTHADIDGVYAGLRPLLAGESEETSKLSREHAVAVPAPGLVAIAGGKYTTYRVMAADAIDAAAQFIPARVAPSITEKVSLLGADGYCALINQAEHVAQLRGLHPYRVRHLLDRYGSLIGDVLALAADRPDLLNPITEAPGYLRVEALYAVTAEGALHLEDILARRMRISIEYSHRGVDCAREVADVVAPVLGWTAGDVEREVANYTARVQAEILSQAQPDDVSADELRASAPEARAEILEPVPLN
>NZ_CP053068.1|WP_003878980.1|409520_410393_+|hypothetical-protein
MRPAPLPVRDGLGPARVRLRGGPVLAELTARFGAAARAKVLAAEVVTADGAVVDEATVLPAGASVYLYRELPDEVVVPFDLPVLHRDDDIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPELSPAHRLDRLTAGVLLFTARREVRGAYQTLFSRGLVDKTYLARAAVDPALVFPRVLAGRIVKHRGRMQAVCEPGPPNALTEVELLSPDGLYRLRPRTGRTHQLRLQMASLGIPIIGDPLYPNIIDVPADDFSTPLQLLAQRIEFDDPRTGARRVFVNRRTLDDPGP
>NZ_CP053068.1|WP_015632573.1|410432_410891_+|hypothetical-protein
MRRQLRIPERANDAETALLRYLLYGLLPAWFIPALLDWNQHRRSRIEITSGTRESLIHLLMMAEVGVPITLVLLCEINPLVLSTILASIAAHEATALWDVTAAERSGRRVTTWEQHVHSFLESLPIMAASALGCLHWREVRELVRGARSRDA
>NZ_CP053068.1|WP_003874501.1|411096_411384_+|hypothetical-protein
MRHGTVAAAAALLLAAGVIAAAPPARAGCQYGGPVLSKCDGPVQPDGTWQRCVAVTRLIPNGASSYLVPDGHCEQLGPDQHPADLAFADPPGHID
>NZ_CP053068.1|WP_003878975.1|411615_412752_+|PPE-family-protein
MDLFAPPEVTSTLIHTGPGAGSLIEAAAAWQRVAVELENSVSSYASTLSSLIESWDGPSAMAMLQSVQPYLLWLRETAQQSAQLANSAEAAATAFGTVRSTVVHPSVVSANRTRLAQLLATNRFGTNTAAIAETENEYQTMWANNSAALSRYQAASSQATSPLTQFNSPLAVTDPGGTANQQAAVMKASVDSSGSSVGSVLNDLNMPGGFDPNAGWFNYFSTWGNQFISSGFPINLLGVWAQLATAQGVASVGGDIGSGLSEGLGATTASLANAIKGIGAGAVAPSGAMGVGVSLGKLTAPPAVVGLLPGTQTGVQLASAASPLPAAESGFPLMPMMVPPPTTSAGTGWRKRKQQKYEDVAYGREVKGKVMPRNPSAG
>NZ_CP053068.1|WP_003874504.1|414370_414724_-|DUF732-domain-containing-protein
MTSTQIRKRARPRSLVVAGLLPLAGLLGVITTPAHATSADDAFLAALKAKGINYESPDAAVNSGHTVCHELDMGQTPEQVANNVLSSSTLDSYHAGYFVGVSIKAYCPKYAAAAAGS
>NZ_CP053068.1|WP_003874505.1|414915_415833_+|prolyl-oligopeptidase-family-serine-peptidase
MAYARWLWLAVLAVCVVGCGVRHVSAASARDISGTFRSGGMDRTYMLHVPAGDPVGLVLSLHGGGGTGIAQRGLTGFDAVADAHNLLVVYPDGYEKSWADGRGASPADRHHVDDVAFLVGLVTKLQNDYRVAPGHVFVTGMSNGGFMSNRLACDRADVFAAVAPVAGTLGVGVACNPSRPVSVWAAHGTADPLVPFKGGAVRGRGGLSHAVSAEAMVDKWRKADGCQGDPSMELLPDARDGTVVHRFDSTSCAASTEVVFYRIDKGGHTWPGGKQYLPAAVIGPTTHTLDGSEAIAEFFLAHARD
>NZ_CP053068.1|WP_003874506.1|415829_416582_-|Fpg/Nei-family-DNA-glycosylase
MPEGDTVWHTAAVLREHLLGETLTRCDIRVPRFATVDLTGQVVDEILSRGKHLFIRVGAASIHSHLKMEGSWRVGPRVRVDHRARIVLETGAATAVGVDLGVLQILDRDRDGEAVAHLGPDLLGEDWDPARAAANLAARPQRPIAEALLDQRVLAGIGNVYCNELCFVSGHLPTTPVSAVADPRRLVSRARDMLWLNRFRWNRCTTGDTRNGRQLWVYGRAGQPCRRCGTPIEFDDSGDRVTYWCPSCQR
>NZ_CP053068.1|WP_010949952.1|416584_421225_-|ATP-dependent-helicase
MSTPAEPRPSRPSDPLGRFSAITREWFTSTFAAPTTAQAQAWSAIADGHNTLVIAPTGSGKTLAAFLWALDSLAGQSERAPGTRVLYVSPLKALAVDVERNLRTPLAGLTRIAERAGLPAPDISVGVRSGDTPPAVRRQLINRPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHAIAGGKRGAHLALSLERLDALREGRPAQRIGLSATVRPPEELARFLSGTAPGARTTVVAPPSAKTVELSVQVPVPDMANLANNTIWPDVENRLVDLIEAHGSTIVFANSRRLAERLTARLNEIHAERSGVELSATANPKVAGGAPAHIMASGQTYGVEPILARAHHGSVSKEQRALVEEDLKRGLLKAVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSRGVLFPKHRTDLIGCAVTAQRMLAGQIETMRVPANPLDILAQQTVAAAALEPLDADRWFETVRRAAPFATLPRSIYEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFTVYLASEAEKPSRVGELEEEMVYESRPGDVISLAATSWRITEITHDRVLVIPAPGQPARLPFWRGDGVGRPAELGAALGAFTGELAGLSREEFDSRCAALGFDAYAVDNLYGLFDEQRTAAGVVPTDTTLLVERFRDELGDWRVILHSPYGLGVNGPLALAVGRRLRERYGIDEKPTASDDGVVVRLPDTVSDFASDGGDTPPGAELFVFDADEIDPIVTAEVGGSALFASRFRECAARALLLPRRHPGRRSPLWQQRQRAAQLLEVARKYPDFPVVLETVRECLQDVYDVPALVALMAGIAQRRVRVLEVETQRPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGRVELRELLDPEVVAATARALQHLAPERAARDAEAVADLLRLLGPLTEDEVVARAGGADAVEVRGWLEGLRAARRAVPVSFAGRSWWVAIEDIGRLRDGLGIAVPLGVPAAFTEEVADPLGELLGRYARTHTPFSTAEAAARFGLGLRVTADVLGRLADPSTSQGRLVRGDFVAARPSEPGGVLGAEQWCDADVLRILRRRSLAALRAQVEPVSTAAYGRFLPAWHRVGAAESSRAPGHSGLDGLMSVIEQLAGVRLPASALEPLVLAPRVRDYSPALLDELLATGEVTWSGAGSISGSDGWIALHPSESAPLTLQGPADIELGEAHRAILDVLAGGGGYFFRQLATDGVSDAELKAAVWELVWAGWITGDTFAPVRALLGGGGTRRRSAPAHRAQRPPRLSRYSVAHPQARPADPTVAGRWSLLPPPEPDSTVRAHFQAELLLGRHGVLTRGAVAAEGVAGGFATLYKVLSTFEDAGRCQRGYFIESLGGAQFAVASTVDRLRGFADGVDPQRPEYRAIVLAAADPANPYGAALPWPASSADGARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPAAQHAAAAALAGLVSARRVAAILVERIDGVPALAPRGDGAAGNDALTALADAGFARTPRGMRLR

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Crispr_ID: NZ_CP053068_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053068_2

932492-932572

Orphan

Consensus_repeat	Method
GCCGCCGAAGGCGGGTAGCTGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053068_2

>merge|NZ_CP053068|2|932492-932572|CRISPRCasFinder
GCCGCCGAAGGCGGGTAGCTGGAGCGCAGGCGATCGGGCCTGGGCCTGCGGACAGCTCGCCGCCGAAGGCGGGTAGCTGGC

>NZ_CP053068|2|2|932492-932572|CRISPRCasFinder
GCCGCCGAAGGCGGGTAGCTGGA	GCGCAGGCGATCGGGCCTGGGCCTGCGGACAGCTC
GCCGCCGAAGGCGGGTAGCTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053068.1\|WP_003875103.1\|927606_928302_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP053068.1\|WP_016705993.1\|934002_934257_-\|DUF2631-domain-containing-protein	unknown	unknown	gnl\|CDD\|371308
NZ_CP053068.1\|WP_033706315.1\|932639_933143_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP053068.1\|WP_003875112.1\|935621_936845_+\|RIP-metalloprotease	unknown	unknown	gnl\|CDD\|308008
NZ_CP053068.1\|WP_003875113.1\|936877_938044_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP053068.1\|WP_003875106.1\|929854_930412_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP053068.1\|WP_003875104.1\|928470_928710_-\|CsbD-family-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875118.1\|942419_943913_+\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NZ_CP053068.1\|WP_003875117.1\|941557_942415_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|237252
NZ_CP053068.1\|WP_003875107.1\|930444_931380_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP053068.1\|WP_019305942.1\|926614_927583_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153249
NZ_CP053068.1\|WP_003878696.1\|940938_941526_+\|DUF1707-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NZ_CP053068.1\|WP_003878703.1\|924591_925431_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187613
NZ_CP053068.1\|WP_003875098.1\|924087_924501_+\|ChaB-family-protein	unknown	unknown	gnl\|CDD\|377614
NZ_CP053068.1\|WP_015632592.1\|934378_935602_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP053068.1\|WP_003875114.1\|938092_938947_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225928
NZ_CP053068.1\|WP_003878697.1\|939075_940893_+\|penicillin-binding-transpeptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223839
NZ_CP053068.1\|WP_003875100.1\|925490_925667_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875101.1\|925976_926549_+\|MPT63-family-protein	unknown	unknown	gnl\|CDD\|370335
NZ_CP053068.1\|WP_010949785.1\|929041_929839_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787

Protein	Function_ID	Function_description	E-value
NZ_CP053068.1\|WP_003875103.1\|927606_928302_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.08297e-34
NZ_CP053068.1\|WP_016705993.1\|934002_934257_-\|DUF2631-domain-containing-protein	gnl\|CDD\|371308	pfam10939, DUF2631, Protein of unknown function (DUF2631). This is s bacterial family of proteins with unknown function.	1.39951e-29
NZ_CP053068.1\|WP_033706315.1\|932639_933143_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	2.73008e-44
NZ_CP053068.1\|WP_003875112.1\|935621_936845_+\|RIP-metalloprotease	gnl\|CDD\|308008	pfam02163, Peptidase_M50, Peptidase family M50.	5.30084e-53
NZ_CP053068.1\|WP_003875113.1\|936877_938044_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP053068.1\|WP_003875106.1\|929854_930412_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.48826e-104
NZ_CP053068.1\|WP_003875118.1\|942419_943913_+\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NZ_CP053068.1\|WP_003875117.1\|941557_942415_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|237252	PRK12896, PRK12896, methionine aminopeptidase; Reviewed.	1.38042e-158
NZ_CP053068.1\|WP_003875107.1\|930444_931380_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.53347e-61
NZ_CP053068.1\|WP_019305942.1\|926614_927583_+\|acyltransferase-family-protein	gnl\|CDD\|153249	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.	1.22614e-45
NZ_CP053068.1\|WP_003878696.1\|940938_941526_+\|DUF1707-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	1.41799e-14
NZ_CP053068.1\|WP_003878703.1\|924591_925431_-\|SDR-family-oxidoreductase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	9.46144e-150
NZ_CP053068.1\|WP_003875098.1\|924087_924501_+\|ChaB-family-protein	gnl\|CDD\|377614	pfam06150, ChaB, ChaB. This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in E. coli and is found next to ChaA which is a cation transporter protein. ChaB may be regulate ChaA function in some way.	3.827e-18
NZ_CP053068.1\|WP_015632592.1\|934378_935602_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP053068.1\|WP_003878697.1\|939075_940893_+\|penicillin-binding-transpeptidase-domain-containing-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	1.58505e-75
NZ_CP053068.1\|WP_010949785.1\|929041_929839_+\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	2.45004e-133
NZ_CP053068.1\|WP_003875101.1\|925976_926549_+\|MPT63-family-protein	gnl\|CDD\|370335	pfam09167, DUF1942, Domain of unknown function (DUF1942). Members of this family of bacterial proteins assume a beta-sandwich structure consisting of two antiparallel beta-sheets similar to an immunoglobulin-like fold, with an additional small, antiparallel beta-sheet. The longer-stranded beta-sheet is made up of four antiparallel beta-strands. The shorter-stranded beta-sheet consists of five beta-strands, four of these beta-strands form an antiparallel beta-sheet. The exact function of this family of proteins is unknown, though a putative role includes involvement in host-bacterial interactions involved in endocytosis or phagocytosis, possibly during bacterial internalisation.	4.04964e-49
NZ_CP053068.1\|WP_003875114.1\|938092_938947_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225928	COG3393, COG3393, Predicted acetyltransferase [General function prediction only].	1.2402e-75

>NZ_CP053068.1|WP_003875107.1|930444_931380_+|phosphatidate-cytidylyltransferase
MATSDPGAGDEPEHAVENTTEGAAGQRAKKKTSRAGRDLRAAIAVGAGIGAVLIVTLVFAPRFWVPIVAMAILVASHEVVRRLREAGYVIPVIPLLAGGQLTVWLTWPFHAAGALAGFGVTVVACLFWRLFMQDNRKRPEPFAGSPSANYLRDASATVFLACWVPLFASFAALLVYPADGAGRVFCLMITVVASDVGGYAVGVLFGKHPMVPAISPKKSWEGLAGSLVLGITAATLAATFLAGKAPWVGALLGVVLVFTCTLGDLVESQVKRDLGIKDMGRLLPGHGGLMDRLDGVLPSAVAAWTVLTLVP
>NZ_CP053068.1|WP_003875106.1|929854_930412_+|ribosome-recycling-factor
MIDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRIVIDYYGAATPITQLASINVPEARLVVIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVKHKEGELLEV
>NZ_CP053068.1|WP_010949785.1|929041_929839_+|UMP-kinase
MTESREPHVAGSAAPRPEPANGLASGQPSSRARYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIAEVVRGGVQVAVVIGGGNFFRGAQLQQRGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGAEVVLMAKAVDGVFSADPRQYPEAELITAISHREVIDRGLRVADATAFSLCMDNGMPILVFNLLTNGNIARAVGGEKIGTLVTT
>NZ_CP053068.1|WP_003875104.1|928470_928710_-|CsbD-family-protein
MAEENKSGPAEAVKGVVEDVKGKAKEAVGAVAGRDDLTREGQAQQDKAEAQRDAAKKEAEAEAARGGAEAAEERQRANQ
>NZ_CP053068.1|WP_003875103.1|927606_928302_-|response-regulator-transcription-factor
MSLDVVVLTNEDDFESALPDLSRFARPARRAALSTDGDGQFGPADVAIIDARSNVAAAQAVSHRLTADHPATAVVALVAPADCAAVDVDCNFDDVMLPGTCAEELQARLRLAIGRRRGGLDGTLKFGDLLLHPASFTASLDGRELNLTLTEFKLLNFLVQHAGQAFTRTRLMQQAWGYEGNGRARTVDVHIRRLRAKLGTRHQSLVGTVRGVGYRAPTPPQPEWIVGHQKP
>NZ_CP053068.1|WP_019305942.1|926614_927583_+|acyltransferase-family-protein
MRARIGYPEFMSNPDHRPTQVRAQAQRHAAETRATMQERRNGQRGGLSGWVAERAARWDLSGQDEDTLQRQKYLWNALVDYWFRMEIDGWENIPDTPPALLVGVHSGAPFVWDAWTVGLQWWRRFGPDRPLHGTAHDALMAIPLFGRYFRSMGVLPAAPDAIATALAEGRDVALWPGGEVDSLRPWTERDRANLAGRTGFVKMAIRAGVPIVPIATVGGADAMPVLIRGDRLSKALRLDRLLRLKVFPLAISLPWGIAPAALPQLPLPAKIRTRFMPPVELDNDPARVQDDEYVERKYREVQDSIQQGMDALARRRAFPVFG
>NZ_CP053068.1|WP_003875101.1|925976_926549_+|MPT63-family-protein
MKVTKNAVLTAAAAGGIAAASVFAAAPAAAAPNIQGFGVSEQLVDGPLVTDYTVSNLQPSNVSIPGYTPKGTLYQADVSVRSDGGVVTPMVHDFIARGPNGQNYRVIDNVAVPNGLSPAPIPQGTESTGTLYFDVTGAPPNGVVYNDGMQDVLMWTSNVPSSAPGAPNSPAPGAPNSPAPGAPPAPAAHT
>NZ_CP053068.1|WP_003875100.1|925490_925667_-|hypothetical-protein
MQRGNSKHSSRQDDELKHELDGTVRGNRTSRSEEWRDPEPPADDDPDVPTAGPSRRES
>NZ_CP053068.1|WP_003878703.1|924591_925431_-|SDR-family-oxidoreductase
MGFVAQQQSVPGVQAKMEPIPDCGENSYRGSGKLLGKKAIITGGDSGIGRAVAIAYAREGADVLIAYLNEDDDARDVARHVTDAGRKCVLVPGDLSDPAHCRAVVDRAVRELGGVDILVNNAAYQMMHKNLDEISDEEWDYTFRLNVGAYFYLTKAALPHLRAGSSIIGSSSVNSDTPNPTLAPYAATKAAIANFSASLAQLLGDKGIRVNSVAPGPIWTPLIPSTMPPDSVESFGDNVPLGRAGQPAELAPIYVLLASDEASYISGARVAVTGGRPIL
>NZ_CP053068.1|WP_003875098.1|924087_924501_+|ChaB-family-protein
MPKTTKGGAPKKGELPSTLQRSSAKAQRTFAKAHDAAAQEYGSEERAHRVAYSAVKHSFEKVGDHWEPKAKKGPSDQRARSGGPRASGASAEGVDANASKKHLLDVARRLDVRGRSTMTKSELVDAIKKHNRRARAR
>NZ_CP053068.1|WP_033706315.1|932639_933143_+|protein-disulfide-oxidoreductase
MSRLSFVCRLLAATAFAVALLLGLGDVPRAAATDDRLQFTATTLSGAPFNGASLQGKPAVLWFWTPWCPYCNAEAPGVSRVAAANPGVTFVGVAAHSEVGAMANFVSKYNLNFTTLNDADGAIWARYGVPWQPAYVFYRADGSSTFVNNPTSAMPQDELAARVAALR
>NZ_CP053068.1|WP_016705993.1|934002_934257_-|DUF2631-domain-containing-protein
MASTEVEHFTGVDTVEVPSAAWGWSRINHRTWHVVGLIIFGLLLAMLRGNHVGHIENWFLIGFATLVLVVLIRDLWGRRRGWIR
>NZ_CP053068.1|WP_015632592.1|934378_935602_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MTNPTSDGQPRGRLRVLVLGSTGSIGTQALQVIAANPDRFEVVGLAAGGANLDTLLRQRAETGVTNVAVADEHAARRAGDIPFCGPEAATRLVEETEADVVLNALVGALGLRPTLAALESGARLALANKESLIAGGPLVLAAAAPGQIVPVDSEHSALAQCLRGGTGDEVAKLVLTASGGPFRGWTAEELEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLELIETHLLFGIPYDRIEVVVHPQSIVHSMVTFVDGSTLAQASPPDMRLPISLALGWPHRVPGAAACCDFSTASSWEFEPLDNEVFPAVELARHAGQAGGCMTAIYNAANEEAAAAFLAGRVSFGAIVETIADVLHAADQWAPKFSETPANVDDVLDAQRWARQRAQRAVAQARPATASAKTPGVV
>NZ_CP053068.1|WP_003875112.1|935621_936845_+|RIP-metalloprotease
MMFVIGIVLFALAILISVALHECGHMWVARATGMKVRRYFVGFGPTLWSTRRGETEYGLKAVPLGGFCDIAGMTSVEELAPDEADRAMFKQATWKRVAVLFAGPGANFVICLVLLYAIALIWGLPNLHPPTKAIVGETDCVAPEVAPGKLADCTGPGPAALAGIRPGDVIVKVGDTPVSTFDDMAAAIRKVHGNVPIVVDRDGTAITAYVDVTPTQRYLSGGSGPQGAPPQPSTVGAIGVGAVKVAPAHYGVFSAIPASVVFAGDLTVEVGKALVTIPTKVGALVHAIGGGQRDPQTPMSVVGASIIGGDTVDHGLWVAFWFFLAQLNLILGAINLVPLLPFDGGHIAIAVFEKVRNLIRSARGMVAAAPVNYLKLMPATYVVLVFVVGYMLLTVTADLVNPIRLFQ
>NZ_CP053068.1|WP_003875113.1|936877_938044_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MTTGLGMPQTPAPTLAPRRRTRQLMVRDVGVGSDYPISVQSMCTTKTHDVNSTLQQIAELTAAGCDIVRVACPRQEDADALAEIARHSQIPVIADIHFQPKYIFAAIDAGCAAVRVNPGNIKEFDGRVGEVAKAAAAAGIPIRIGVNAGSLDKRFMAKYGKATPEALVESALWEASLFEEHGFSDIKISVKHNDPVVMVAAYEQLAEQCDYPLHLGVTEAGPAFQGTIKSAVAFGALLSRGIGDTIRVSLSAPPVEEVKVGIQILESLNLRPRSLEIVSCPSCGRAQVDVYTLANEVSAGLDGLDVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVRGEVIKTVPESQIVETLIEEAMRIAAQMNSEGGPEATSSGSPVVTVS
>NZ_CP053068.1|WP_003875114.1|938092_938947_+|GNAT-family-N-acetyltransferase
MSAPPLFRLVGERRVSVVRDAAAVWRVLDDDPVASCMVAARVADHGIDPNAIGGELWTLRGADESLCFAGANLIPLRGAPGDLTAFADEAMRGARRCSSLVGRADLVMPMWERLEAAWGPARDVRDRQPLLALSSYPSCDIDTAVRQVRPEELDAYLVAAVDMFIGEVGVDPRIGDGGRGYRRRVASLITAGRAWARFEHGQVVFKAEVGSQSPGVGQIQGVWVHPEWRGLGLGTAGTATVAAVIVGSGRTASLYVNNFNTVARAAYARVGFAEIGTFATVLLD
>NZ_CP053068.1|WP_003878697.1|939075_940893_+|penicillin-binding-transpeptidase-domain-containing-protein
MVTTRTVATSASGLLLVAVIALSGCTPRPDGPGPAAEKFFRALAVGDTATAAQLSDNPNEAREALNAAWSGLQASHLDAQILNAKYAEDTGTVGYRFTWHLPKNRTWTYDGQLKMARDEGRWEVRWTTTALHAKLGEHQTFALRADRPRRASVNELGGSDVLVPGYLYHYTLDATQAGNGAALFGTAHAVVDVLRPFNGALADPQLLAEQASSSTQPVDLVTLHPDDNDKVFPAIGRLPGIVVTPQPEMLPTDPHFAPAVVAAVKKAVIDQLDGQAGWRVVSVNQNGVEVEVLHEVEGSPAPSVSLTIDRAVQNAAQHAVDTRGGKAMIVVIKPSTGEILAIAQNGGADADGLPATNGLFPPGSTFKMITAGAAVDRDMATPNTMLGCPGHLDIGHRTIPNYGGFDLGVVPMSRAFASSCNTTFAELSSKMPPRGLTQAATRYGIGLDYQIDGITTVTGSVPPTVDLAERTEDGFGQGKVLASPFGMALVAATVAAGKTPVPQLIVGRQTAVQGDTTPISPKMVDALRPMMRLVVTNGTAKEIAGCGAVYGKTGEAEFPGGSHSWFAGYRGDLAFAALIVGGGSSEYAVRMTKVMFESLPPDFLA
>NZ_CP053068.1|WP_003878696.1|940938_941526_+|DUF1707-domain-containing-protein
MGESGEEMVALRVSDADRNGIMRRLHNAVALGLIDIDEFEQRSSQVSYARTRGELDDLVGDLPGPGAIVTSAADRVELRGWAGSLKRHGEWTVPTRLALVRRLGSVELDLTRARFAGPVVVIELDMRFGSVQIRLPDGASASIDDVEVYVGSAVDRRKDAPGEGRPHVVLTGRVVCGSVVIRGPRRSLLRRRLSG
>NZ_CP053068.1|WP_003875117.1|941557_942415_+|type-I-methionyl-aminopeptidase
MPARTALSPGALSPTLPVPARIPRPEYVGKPTAREGSEPWVQTPEVIEKMRVAGRIAAGALVEAGKAVAPGVTTDELDRIAHEYMIDHGAYPSTLGYKGYPKSCCTSLNEVICHGIPDSTVIEDGDIVNIDVTAYIDGVHGDTNATFLAGDVAEERRLLVERTREATMRAINAVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPSVSTIMQPGMTFTIEPMINLGGLDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTLP
>NZ_CP053068.1|WP_003875118.1|942419_943913_+|cobyric-acid-synthase
MSGALLVAGTSSDAGKSVVVAGLCRLLARRGVRVAPFKAQNMSNNSAVTVEGGEIGRAQAIQARAAGLEPSVRFNPILLKPGSDRTSQLVIKGQVAESVTATSYVQHRDRLAALVLNELTCLRDEFDAVICEGAGSPAEINLRATDLANMGLARAADLAVILVGDIDRGGLLAHLFGTVAVLDPQDQALIAGFVVNKFRGDPALLQPGLRRLHDITGRPTYGVLPYADRLWLDAEDSLSVLAHRVVGAPDPPLGDDWLRVAAVRLPRISNSTDVEALACEPGVLVRWVSEPSDVADADLVVIPGSKATVADLSWLRERGLAAAITAHAAAGRPVLGICGGFQMLCRRIDDRVESGAGEVAGLGLLDADIAFHPAKTLRRWQRPLAGYEIHHGRVSRCAEHSWFDSDAEPQGLVRGAVFGTHWHGLLDNDDFRRAWLVRVADAAGRRFVPGDTDVAARRDAQLDLAADLLAAHLDVDAVLGLLDGPPPRPRLATRLCR

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Crispr_ID: NZ_CP053068_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053068_3

1085964-1086044

Orphan

Consensus_repeat	Method
CGCTAATGGCGGTGACCCGCTGCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053068_3

>merge|NZ_CP053068|3|1085964-1086044|CRISPRCasFinder
CGCTAATGGCGGTGACCCGCTGCGCCCGGCTGCGCCGCGCTTGCGATCGCCGCGCCGCTAATGGCGGTGACCCGCTGCGCC

>NZ_CP053068|3|3|1085964-1086044|CRISPRCasFinder
CGCTAATGGCGGTGACCCGCTGCGCC	CGGCTGCGCCGCGCTTGCGATCGCCGCGC
CGCTAATGGCGGTGACCCGCTGCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053068.1\|WP_003878596.1\|1091901_1092654_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223616
NZ_CP053068.1\|WP_010949732.1\|1075697_1077623_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP053068.1\|WP_003878601.1\|1085493_1085898_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP053068.1\|WP_010949731.1\|1077667_1078954_-\|ribonuclease-D	unknown	unknown	gnl\|CDD\|223426
NZ_CP053068.1\|WP_003875266.1\|1083692_1084445_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP053068.1\|WP_019305914.1\|1090816_1091347_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP053068.1\|WP_003875271.1\|1088954_1089719_-\|pyrimidine-reductase-family-protein	unknown	unknown	gnl\|CDD\|184482
NZ_CP053068.1\|WP_003878600.1\|1089717_1090839_+\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|281902
NZ_CP053068.1\|WP_003875262.1\|1079700_1080522_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235991
NZ_CP053068.1\|WP_003875265.1\|1083000_1083696_+\|chlorite-dismutase-family-protein	unknown	unknown	gnl\|CDD\|225792
NZ_CP053068.1\|WP_003875277.1\|1093318_1093663_+\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
NZ_CP053068.1\|WP_003875270.1\|1087380_1088940_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|312032
NZ_CP053068.1\|WP_003875264.1\|1081639_1082995_+\|protoporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|237009
NZ_CP053068.1\|WP_003878602.1\|1084511_1085360_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380141
NZ_CP053068.1\|WP_003875274.1\|1091334_1091862_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875263.1\|1080569_1081643_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP053068.1\|WP_016706020.1\|1078955_1079573_-\|DUF3000-domain-containing-protein	unknown	unknown	gnl\|CDD\|378665
NZ_CP053068.1\|WP_003875269.1\|1086065_1087352_-\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|378217
NZ_CP053068.1\|WP_016706023.1\|1092750_1093119_+\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
NZ_CP053068.1\|WP_003875278.1\|1093691_1094621_+\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|378238

Protein	Function_ID	Function_description	E-value
NZ_CP053068.1\|WP_003878596.1\|1091901_1092654_-\|hypothetical-protein	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	9.9331e-17
NZ_CP053068.1\|WP_010949732.1\|1075697_1077623_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP053068.1\|WP_003878601.1\|1085493_1085898_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	4.50437e-76
NZ_CP053068.1\|WP_010949731.1\|1077667_1078954_-\|ribonuclease-D	gnl\|CDD\|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	1.50099e-104
NZ_CP053068.1\|WP_003875266.1\|1083692_1084445_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.91508e-21
NZ_CP053068.1\|WP_019305914.1\|1090816_1091347_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.60086e-19
NZ_CP053068.1\|WP_003875271.1\|1088954_1089719_-\|pyrimidine-reductase-family-protein	gnl\|CDD\|184482	PRK14059, PRK14059, pyrimidine reductase family protein.	7.9616e-122
NZ_CP053068.1\|WP_003878600.1\|1089717_1090839_+\|cell-division-protein-ZapE	gnl\|CDD\|281902	pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop motif-containing family of proteins includes AFG1, LACE1 and ZapE. ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein with an ATPase motif typical of the family. LACE1, the mammalian homolog of AFG1, is a mitochondrial integral membrane protein that is essential for maintenance of fused mitochondrial reticulum and lamellar cristae morphology. It has also been demonstrated that LACE1 mediates degradation of nuclear-encoded complex IV subunits COX4 (cytochrome c oxidase 4), COX5A and COX6A, and is required for normal activity of complexes III and IV of the respiratory chain. ZapE is a cell division protein found in Gram-negative bacteria. The bacterial cell division process relies on the assembly, positioning, and constriction of FtsZ ring (the so-called Z-ring), a ring-like network that marks the future site of the septum of bacterial cell division. ZapE is a Z-ring associated protein required for cell division under low-oxygen conditions. It is an ATPase that appears at the constricting Z-ring late in cell division. It reduces the stability of FtsZ polymers in the presence of ATP in vitro.	2.03101e-109
NZ_CP053068.1\|WP_003875262.1\|1079700_1080522_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235991	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein.	8.26517e-171
NZ_CP053068.1\|WP_003875265.1\|1083000_1083696_+\|chlorite-dismutase-family-protein	gnl\|CDD\|225792	COG3253, ywfI, Predicted heme peroxidase involved in anaerobic stress response [General function prediction only].	1.15157e-106
NZ_CP053068.1\|WP_003875277.1\|1093318_1093663_+\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	1.40033e-26
NZ_CP053068.1\|WP_003875270.1\|1087380_1088940_-\|alpha/beta-hydrolase	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	1.11251e-18
NZ_CP053068.1\|WP_003875264.1\|1081639_1082995_+\|protoporphyrinogen-oxidase	gnl\|CDD\|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	0
NZ_CP053068.1\|WP_003878602.1\|1084511_1085360_-\|hypothetical-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	5.95391e-07
NZ_CP053068.1\|WP_003875263.1\|1080569_1081643_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP053068.1\|WP_016706020.1\|1078955_1079573_-\|DUF3000-domain-containing-protein	gnl\|CDD\|378665	pfam11452, DUF3000, Protein of unknown function (DUF3000). This is a bacterial family of uncharacterized proteins.	4.78428e-92
NZ_CP053068.1\|WP_003875269.1\|1086065_1087352_-\|DUF2029-domain-containing-protein	gnl\|CDD\|378217	pfam09594, GT87, Glycosyltransferase family 87. The enzymes in this family are glycosyltransferases. PimE is involved in phosphatidylinositol mannoside (PIM) synthesis, a major class of glycolipids in all mycobacteria. PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of PIM. The family also includes alpha(1-->3) arabinofuranosyltransferase, invloved in the synthesis of of mycobacterial arabinogalactan.	1.90819e-35
NZ_CP053068.1\|WP_016706023.1\|1092750_1093119_+\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	1.87569e-30
NZ_CP053068.1\|WP_003875278.1\|1093691_1094621_+\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	1.88345e-49

>NZ_CP053068.1|WP_003878601.1|1085493_1085898_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MTSPKVQLTDDEWRQRLTPEEFHVLRQAGTERPFTGEYTDTKTEGVYQCRACGAELFRSTEKFESHCGWPSFYDPANSDAVILRPDHSLGTTRTEVLCANCHSHLGHVFTGEGYPTPTDQRYCINSICLRLAPS
>NZ_CP053068.1|WP_003878602.1|1084511_1085360_-|hypothetical-protein
MDDAFVGSDAVRRGTLSRHRLRAQFRAIYPDIYLPAHAARSLRTRSVAAWLWSGRRGVLAGLAAAALHGSSWIDDDEPIELIWRNPHPPAGVITRNQRLEPDEITRVAGLPVTTPARTAFDLARQRPRGEAVARLDALMRATPFSTAEVLMLAERRPRARGLRKLRAALPLVDPGAASPKETWLRLLLIDAGIPVPATQIPVQQNWRLIAVLDMGWEDYLVAAEYDGDHHRTNRRQYARDQARLRTLQKLGWIVVRVIAEDKPDDVVRRTRDALTRRGYRDT
>NZ_CP053068.1|WP_003875266.1|1083692_1084445_+|class-I-SAM-dependent-methyltransferase
MTASFDPADPARFEEMYRDQRTSHGLPAATPWDIGGPQPVVRQLVALGAVKGEVLDPGTGPGHHAIYYASQGFSATGIDGSAAAIERARANARKAGVSVNFELADATKLDGFDGRFDTVVDCAFYHVFATEPELRSSYARALHRATKPGARLYMFEFGEHDVNGFKMMRSLSENDFRDVLPAAGWEISYLGPTTYQVNLSAETIQMMAARNPDMADEAAKLLERFRAMEPWLQGGRVHAPFWEVHATRVD
>NZ_CP053068.1|WP_003875265.1|1083000_1083696_+|chlorite-dismutase-family-protein
MAKLDYDALNSAIRYLMFSVFAVRPGALGDQRDEVVDDASRFFKQQEERGVVVRGLYDVAGMRADADFMIWTHAETVEALQATYADFRRTTALGRVCSPVWSSVALHRPAEFNKSHIPAFLAGEEPGAYICVYPFVRSYEWYLLPDEERRRMLAEHGMAAREYKDVRANTVPAFALGDYEWILAFEAPELHRIVDLMRELRATDARRHTRAETPFFTGPRVPVEQLVNSLP
>NZ_CP053068.1|WP_003875264.1|1081639_1082995_+|protoporphyrinogen-oxidase
MTARSYCVVGGGISGLTAAYRLRVAAGDDAVITLLDPAPQLGGILRTEPVGGVPMDLGAEAFVLRRPELPALLSEVNLTGRQRVSTGARPLIYSRGRLHPLPTGTVVGIPSSAASMARLVDEATLARIDAEPRRPLHWRPGSDPAVADLVGDRFGEQVVSRSVDPLLSGVYAGSAATIGLRAAAPTVAAALDRGAASLTDAVRRALPPATGAPVFGALDGGYRVLVDELVARARPRRVRAAAARLEPAGPGWAVVDDAGARRHADAVILAVPAREVARLLAGIAPRSAAAAGRVVAASSVVLALAVPGDTAFPDCSGVLVATGERLRAKAITLSSKKWGTRADVQLLRLSFGRFGDQVAARTPDEELRGWALADLAAVFGLDVRPVDVRVQRWLDAMPQYGPGHAELVGELRAGLPPTLAVAGGYLDGIGVPACVGAAGRAVEALQAEVAP
>NZ_CP053068.1|WP_003875263.1|1080569_1081643_+|uroporphyrinogen-decarboxylase
MNSSARTRRDLPESPYLAAVNGRKPHRVPVWFMRQAGRSLPEYRALRAQHDMLSACFDAELVCEITLQPVRRHDVDAAILFSDIVVPLLGAGIDLDIVAGVGPVIASPVRTAADVAAMKPLERQRVQPIADAVRLLVSALVEVPLIGFAGAPFTLASYLIEGGPSRHHARTKAMMLADPDSWHALMEKLTDITVGFLRVQLDAGVDAVQVFDSWAGALSLANYRSYVQPHSARVFAALADYGVPMTHFGVGTAELLGAMSAALKPAPATVVGVDWRTALADAATRVMPGTALQGNLDPVVLLAGWPVVETAARAVVDDGRRAVDAGAAGHVFNLGHGVLPETDPGVLTELVSLVHSL
>NZ_CP053068.1|WP_003875262.1|1079700_1080522_-|enoyl-CoA-hydratase/isomerase-family-protein
MPVSHPPVDYHDFPSLRCELGDDGVLTVVLDSPGLNSVGPQMHRDLADIWPVIDRDPAVRAVLVRGEGKAFSSGGSFDLIDETIGDYQGRVRIMREARDLVHNMINCDTPVVSAIRGPAVGAGLVVALLADISVAGRTAKLIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLLGEEAERIGLVSLCVDDDDVLSTAAGIAGKLAQGAQHAIQWTKRSLNHWYRMMGPTFETSVGLEFLSFSGPDVQEGLAAHREKRAARFTGGSAT
>NZ_CP053068.1|WP_016706020.1|1078955_1079573_-|DUF3000-domain-containing-protein
MQNGRDEQERRQVTSSEPAPFREAVAAMNAVVMRPEIELGPIRPPQRLAPHSYALGAEVKHPDREIIPERSDGDAFGRLILLYDPEGADAWDGTIRMVAYIQADLDPSEAVDPLLPEVAWSWLVEALESRMEHVVALGGTVTATTSVRYGDISGPPRAHQLELRASWTATSPAVGAHVQAFCEVLEHAAGLPPAGVTDLSSRSRA
>NZ_CP053068.1|WP_010949731.1|1077667_1078954_-|ribonuclease-D
MGEPSAEGPGSGVPAPIPLPHPSEGVPPISASVPDIEDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRPVAEVLGSDEWILHSADQDLPCLAEVGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYLREAGSKEPGPAARRDRWRRTSGIHRVRDQRGLAAVRELWLTRDRIAQRRDIAPRRILPDSAIIEAALANPTTIEELVALPVFGGRNQRRSAATWLAALDAARQSENPPVDSEPPNGPPPPARWSRRKPEAAARLEAARAALAEVSERVHVPTENLVAPDLVRRLCWDWEPTPDPFAAVDAFLCAGHARPWQRELVDPVLARALQQPLPAVADDDG
>NZ_CP053068.1|WP_010949732.1|1075697_1077623_+|1-deoxy-D-xylulose-5-phosphate-synthase
MLEQIRGPADLQHLSTHQLRELAAEIREFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPIIFDTGHQAYVHKMLTGRAHEFESLRKKGGLSGYPSRSESEHDWVESSHASAALSYADGLAKAFELSGHRNRHVVAVVGDGALTGGMCWEALNNIAASGRPVIIVVNDNGRSYAPTIGGVADHLATLRLQPAYEQALQRGRDALRALPLVGKFAYRVMHSVKAGIKDSLSPQLLFTDLGLKYVGPVDGHDERAVEAALRHARGFGRPVIVHVVTRKGMGYAPAEDDEADQMHSCGVIDPVTGQATKVAGPGWTATFSDALIGYARKRRDIVAITAAMPGPTGLTPFGQQFPDRLFDVGIAEQHAMTSAAGLAMGGMHPVVAIYSTFLNRAFDQIMMDVALHRLPVTMVLDRAGITGSDGASHNGMWDLSILGVVPGMRVAAPRDAARLREELGEALDVDDGPTALRFPKGDVGEDIPAIERRGSGLSGVDVLALPASGCNHDVLLIGVGAFAPMALAVARRLADQGIGVTVVDPRWVLPVSDSILELAARHKLVVTCEDNGVNGGVGSAVSAALRRAELDVPCRDVGLPQRFYEHASRGELLADLALTDQDIARRITGWVAALGSGVAEAEIREHLD
>NZ_CP053068.1|WP_003875269.1|1086065_1087352_-|DUF2029-domain-containing-protein
MYGALVTAAESTGLRDWIQAAFRPRTSAPSVATVLRSALWPIAIFSVLHRSIVVTTNGNITDDFKPVYRAVLNFRRGWDIYNEHFDYVDPHYLYPPGGTLLMAPFGYLPEYPSRYLFILINTVAILIAWYLLLRLFGYTLSSVAAPALLLAMFCTETVTNTLVFTNINGCVLLAEMLFLRWLLDGRVGRQWWAGVAIGLTLTLKPVLGPLLLLPLLNRQWRALVPAFAIPILINAAAWPLVSDPMDFVTRTLPYIGGVRDYFNSSIEGNGVYFGLPTWLIVFMRILFTLIAIGALWLLYRYYRTRDPRFWFTNSAGVLLLWSWLVLPLAQGYYSMMLFPFLMTVVLPNSLIRNWPAWLGIYGFMTLDRWLLFNWMRYGRALEYLKITYGWSLLLIVVFSVLCYRYLDAKAEDRLDRGIDPAWLTAGRE
>NZ_CP053068.1|WP_003875270.1|1087380_1088940_-|alpha/beta-hydrolase
MSRPHPCATILVAVTALLAGCVPGLAADPRFATNSGARPQGAATSKPAPGGPPPLAAPKNDLAWHDCTSRVFADAAVPPAPGIQLDCANYDADLDPVNGGGGALSIGVVRARSNQTPRDAGPLVFTTGSDLPSSAQLPVWLSRAGADVLAAHPIVAVDRRGIGMSSPIDCRDKFDRQQMRDQSQFQAGDDPVANLSEVANTATTNCTDAIAPGASAYDDAHAASDIERLRSTWDVPALALIGIGNGAQVALAYAGSRPDKVARLILDSPVALGVNAEAAAEQQVKGQQAALDAFAAQCIAVNCALGPDPKGAVSALLADARAGKGPGGVSVAQVANAITVALGFPSGGRVNATTDLANALASARSGDTNALNNLINHANAMQDSDGQFVNVCSDAVNRPTPDRVRELVVAWGKLYPQFGTVAALNMVKCVHWPTGSPPPSPKSLKVDVLLLGVQNDPIVGTDGVAATAAGIINANAASKRVMWQGIGHGASIYSGCAVPPLIGYLGSGKLPNTDTYCPA
>NZ_CP053068.1|WP_003875271.1|1088954_1089719_-|pyrimidine-reductase-family-protein
MALPETPLSLLGSVREVDDGELPGLYDYPDGHAGTWVRANFIASVDGGATADGSSGAMGGPGDRFVFNLLRELADVIVVGAGTVRIEGYSGAQLGVAQRQQRQARGQSEVPPLGIVTKSGHLNRDMAVFTRTEVPPLVLTCAAAADQTRRLLSGLCEVLDCSAGDPERVDEATMLALLGKRGMRRILTEGGPTLLNSLLERQLLDELCLTIAPYLVGGHARRIATGPGQLLTRMRCAHVLTDDAGYLYTRYVRC
>NZ_CP053068.1|WP_003878600.1|1089717_1090839_+|cell-division-protein-ZapE
MRLIAARGYSACMHGSGSASASAGVAHLVDRHPTVSPQRLIAQLRPPPTFADVSFATYQPDPAEPTQATAVAACREFCRQAVQRRAGRRKLLGRREILPGVGLYLDGGFGVGKTHLLASAYYELPGDGPVRSPDGPAPKAFATFGELTQLAGVFGFAECVDLLADYTAVCIDEFELDDPGNTTLVARLLSSLVERGVSVAATSNTLPEQLGEGRFAAQDFLREINTLASIFTTVRIEGPDYRHRDLAPAPPPLSDAQVAARAAVVPGATLDDFDALCAHLATMHPSRYLTLIEGVTAVFLTGVHRIDDQNVALRLVSLTDRLYDAGVPVLASGEKLDTIFSAEMLSGGYRKKYLRAMSRLLALTAGANEAYGS
>NZ_CP053068.1|WP_019305914.1|1090816_1091347_-|GNAT-family-N-acetyltransferase
MESLTPAPATHAVRIITTESVDVQQLADLAARTFPLACPTSAAREDIAAFIDANLSAECFARYLADPHRAILAAELDGRIVGYAMLIHDLAGDAAELSKIYVAPEQHGAGTAAALMRLAVDTAGRWGVSRVWLGVNQKNQRAQRFYAKHGFTVSGTRTFQLGAGREDDYLMSRTLR
>NZ_CP053068.1|WP_003875274.1|1091334_1091862_-|hypothetical-protein
MRRWLRVVSAFLIGFPVAAAGVGAVPLPRAWAGDAPIGHIGDTLRVDNGTFIADVTVSSVAPCDPPPGFGYTREGTYKGFPGSTVDRADVTIRAIRVPNPYILATVFSFNGVTPNADAYKPRASDAPDALDNVLVNAPNGAIVRGGVYWDAYRDPVSNVVLLDKKTGYHLAQWNL
>NZ_CP053068.1|WP_003878596.1|1091901_1092654_-|hypothetical-protein
MSEPIRIVHPVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSGASWTDIGKSMGVSKQAAQKRFVPREATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNREITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATAAIAALRADGDPPALIPFSGPARKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGPLHRGGVDKERVEVDLIRALESLGNGKNVGAGEDG
>NZ_CP053068.1|WP_016706023.1|1092750_1093119_+|DUF732-domain-containing-protein
MLCKNHRFMKLFLIVAGFAAVIGLAVPARADSTDDAFVASLDKAGIKYGDADKAAGAGKWVCTTLQGGKQMSDVVSTLQSKNSNLSDDHANTFAAIAVNAYCPDQASSITPATPTDTPPSTS
>NZ_CP053068.1|WP_003875277.1|1093318_1093663_+|DUF732-domain-containing-protein
MRLFLGLCALAATIGLAAPAHADIDNDQDFLKDLRDAGITYQDAGNAITIGKSVCELLDDGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYITGEDRGPKPEGAVGN
>NZ_CP053068.1|WP_003875278.1|1093691_1094621_+|cytochrome-c-oxidase-assembly-protein
MRVDPGPLTWDTAVQTWHLDPVSAVVVVALAAGYAWCYRRAGASARVAPAAYFAAGLLAWVAATCSAVGTYAYLLFWVRALQVLLLLYVVPFFLAQATPVTMLRDALGPSGRDRLDRLLASPIARVLAHPATTSLGMLATPWLLYLTPWYTAALHNEWVGAPTRILLVALGFGYFYARLQEDPVPRRYPQSISLLITVVEALGDGLLGLVIWQGSLIGASYYAGLHRVWGPDPRLDQTIGAGVLWILGDLVGWPFVLLLMRAMSRDERAHAVAVDAELDEAESHDAGGAAASGLWWENDPQLRERFGRG

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Crispr_ID: NZ_CP053068_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053068_4

1115152-1115242

Orphan

Consensus_repeat	Method
GACTGCGTCCGACTGCGTCCCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053068_4

>merge|NZ_CP053068|4|1115152-1115242|CRISPRCasFinder
GACAGCACGTGACTGCGTCCGACTGCGTCCCACCGCGTCCGGACGCAGTGGCGTTCAAGCGGACTGCGACTGCGTCCGACTGCGTCCCACC

>NZ_CP053068|4|4|1115152-1115242|CRISPRCasFinder
GACAGCACGTGACTGCGTCCGACT	GCGTCCCACCGCGTCCGGACGCAGTGGCGTTCAAGCGGACTGC
GACTGCGTCCGACTGCGTCCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053068.1\|WP_003875293.1\|1107074_1108352_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|368185
NZ_CP053068.1\|WP_003875300.1\|1115653_1115944_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_123766519.1\|1110215_1110680_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_123766518.1\|1110843_1111182_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875297.1\|1112671_1113223_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875308.1\|1119979_1120231_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875291.1\|1105037_1105841_+\|acetoacetate-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|377649
NZ_CP053068.1\|WP_003878581.1\|1117433_1117673_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003878579.1\|1118168_1118399_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875294.1\|1108359_1108881_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875307.1\|1119464_1119983_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003878580.1\|1117665_1118100_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875305.1\|1118628_1118811_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_016706028.1\|1113317_1113530_+\|excisionase-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP053068.1\|WP_073578985.1\|1118789_1119098_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214989
NZ_CP053068.1\|WP_003878587.1\|1109456_1109756_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003878583.1\|1116286_1116511_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875301.1\|1116510_1116951_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP053068.1\|WP_003878585.1\|1113526_1114003_+\|DUF2742-domain-containing-protein	unknown	unknown	gnl\|CDD\|371285
NZ_CP053068.1\|WP_003875292.1\|1105844_1107059_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|368185

Protein	Function_ID	Function_description	E-value
NZ_CP053068.1\|WP_003875293.1\|1107074_1108352_+\|amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	1.10644e-17
NZ_CP053068.1\|WP_003875292.1\|1105844_1107059_+\|amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	2.60652e-22
NZ_CP053068.1\|WP_016706028.1\|1113317_1113530_+\|excisionase-family-DNA-binding-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	5.74266e-11
NZ_CP053068.1\|WP_073578985.1\|1118789_1119098_-\|hypothetical-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.50981e-26
NZ_CP053068.1\|WP_003875291.1\|1105037_1105841_+\|acetoacetate-decarboxylase-family-protein	gnl\|CDD\|377649	pfam06314, ADC, Acetoacetate decarboxylase (ADC). This family consists of several acetoacetate decarboxylase (ADC) proteins (EC:4.1.1.4).	1.23325e-49
NZ_CP053068.1\|WP_003878585.1\|1113526_1114003_+\|DUF2742-domain-containing-protein	gnl\|CDD\|371285	pfam10888, DUF2742, Protein of unknown function (DUF2742). Members in this family of phage proteins are the product of the gene phiRv1, however no function is known.	2.64148e-35
NZ_CP053068.1\|WP_003875301.1\|1116510_1116951_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.45589e-07

>NZ_CP053068.1|WP_003878585.1|1113526_1114003_+|DUF2742-domain-containing-protein
MTQNRNGPPIEVEGRAPHHRDRPSTSKVGSHATAYNRTTELTAPSAETPGTTNSRQVSWWETHQFIEALITQANTGPLPPAGTPAWSALADGDPRKLLALAVAGEHHVLRVETAQTAMAEASQAVSAAADWTRIGRRNRDHEDIHRQRPWLRRKAPRC
>NZ_CP053068.1|WP_016706028.1|1113317_1113530_+|excisionase-family-DNA-binding-protein
MPSSSTISPARQARRWASLQQAAEYLGVTDRTVRQMIADGRLAGYRSGNRLVRVDLNELDAAMKPFGGAS
>NZ_CP053068.1|WP_003875297.1|1112671_1113223_+|hypothetical-protein
MADDNLDYLLPEQREWWLTNAAMPPTLVLRCGIGGCGICVGIVKSDKTDPGVAIALMHHKSGKTTVPHYEPIDDERLAALGLPPATELYDASGITLAEHIQRRQREVDSLTIRSVDKTRRVSRRHADPSVAMPLEWIGYIVCPDHGTVALPDPATTVAAMRGQLIPTTHAKRRTFRIFRGTSV
>NZ_CP053068.1|WP_123766518.1|1110843_1111182_-|hypothetical-protein
MLRGVSPEPADVCASGWADAIVTAITGEIIRSVFDAGTVPYGGHRRRRSRETLADVAIQTEDAERLRGLAAVAAFFADELRRANESPRNYPQSHAEGCFLRSEAERLEALML
>NZ_CP053068.1|WP_123766519.1|1110215_1110680_-|hypothetical-protein
MSLGFAIVCMLIFGAVAAAVGQRKHLPVGQSFALGALLGLIGLVVVICQKPGLPQAPQGMRAVKCRRCNAVQNVPENERVYECWQCKAANELWPAPPVSGGKPQVVNAPIQTAKVRCHKCQHVQTVPVDQATFTCEECRTKLKRKPLTSNPTGE
>NZ_CP053068.1|WP_003878587.1|1109456_1109756_-|hypothetical-protein
MRFTSAAAAAGMALTALIGASAAQADTGVNGYVQCVGGDAKPPPPGQQAEFWFPSVHVIDVDLSSGVPPEQVVQRLVDMGVKPEDAATRVRCFMANAPH
>NZ_CP053068.1|WP_003875294.1|1108359_1108881_-|hypothetical-protein
MSTLAAALALTACLTAPGATADPTPQQSPFPTGKSGTTIHVTEYSTATADVTLNSATWVSSGCPGGGGCNVIELTIAGKSDKPFTYSQASITAASTPWRQDPYRDTQGGSSLADYQQLNKTPPLRVGSVTNGQTAHGFIAYDGAIRQGDVYIEFNDPDAPAAPTPLAGWKVHT
>NZ_CP053068.1|WP_003875293.1|1107074_1108352_+|amidohydrolase
MTDVDPYIIISADTHAELPTERYREYVDPEYREDFETYLAEKTAAAQAGGFIDEEFAQEWFSEHGEGIAGGWDVALRDKELDGDGVVGEVIFPDADAVTGVAGAPFGAGLGQSGDLDPGRAMAGARAHNRWLAELCSHSPERRAGVAVVPILADVDAAVAEITRAAESGLRGGILIPARWVGYPPYHDRRYDKVWAACQDLQMPVHTHSGPAPQEEYGGHLGIYVTEVRWWGARPLWFALWSGVFERFPGLRWGVTECGAFWANDLLWLMDTRYLREHSAKKMSHLMEGDLTMPPSAYFDRNCFIGATTTERRELARRYEIGVSNILWGNDFPHPEGTWPHTRDWLRRSFWDIPVEETRQMLGLAAAELYNFDLGALAPLAARIGPVPADLGQDDAVSIPKWEAARRTGRHWLTDAEPMPDLVQS
>NZ_CP053068.1|WP_003875292.1|1105844_1107059_+|amidohydrolase
MDRYTVISADCHAGADLLDYRDYLDPQYRDEFDGWAKTYVNPFGDLSEPDAERNWNSARRNCELDTEGIAGEVIYPNTVPPFFPHASLAAPPPETARELELRWAGLRAHNRWLADFCSLSPERRAGVGQILLGDLDEAVAEVGQIAKLGLRGGVLLPGIAPGTGIPPLYAEHWEPLWAACAEAGVVVNHHGGNAGPSPTDGWGSSFAVWVYETHWWAHRALWHLIFSGALDRHPDLTVVFTEQGAGWIPATLASLDVAAARYARANSAIARFAGPTAGSLSLKPSQYWARQCYVGASFMRPVECAERHGIGVEKVMWGSDYPHYEGTAPYTREALRHTFSDVPPDEVAAMVGGNAARVYGFDLDALAPLVDRIGPSVAEVAEPLAAVPADASSTVFEPDPIRTW
>NZ_CP053068.1|WP_003875291.1|1105037_1105841_+|acetoacetate-decarboxylase-family-protein
MSSNVIRYGPRPPEAQVDHEIDATKAPIATEAVTVIYLTEPDIVAAVLPKPLQPADEPLVRIQLQRVRIEGMAPFGSAVFSVTARHGDRYGDYPLFMPQSTEQSVTGGRETFGEPKKLAQITVERDGDRVTAGVDRLGYRLIRLSGQVSGRAELPPDQMNTEFYFKFLRAPDGSGITDPHLVYGEYHRHYELLENIDGTLELGESPLDPVADIVIRQVTSITWCRRRTVQVGRIAARVPQEWLLPYVHQRYDDVALLAAPRPEPARA
>NZ_CP053068.1|WP_003875300.1|1115653_1115944_+|hypothetical-protein
MTTDNPTPSDDQALAALYATALGVLLAGLVNDGRLTTEIERIIAAGEKVTAGVLGFLTAAAANAYEYEHGSREAAIDAVTADLATVLLAAGEGQPS
>NZ_CP053068.1|WP_003878583.1|1116286_1116511_+|hypothetical-protein
MTALTALRDVLAAAIDECGSKRDLAALLRQFTAVLAQIEAARVRPPQRRIADEIAARRTARQAAAAADAKSADR
>NZ_CP053068.1|WP_003875301.1|1116510_1116951_+|helix-turn-helix-domain-containing-protein
MSDELRQRYKVIFDAVRVSEIEITPDLARCLVHWLGDYIRLKQQPGQPGVPEGLVAAQTALAEAYAAVTHSPRSERDRPIGAGFVFSAHDAWVGTAEAAEMLGIKAGSVGWLCRESHLEHRKVGRQYMISTASIEDYKRRKAERSA
>NZ_CP053068.1|WP_003878581.1|1117433_1117673_+|hypothetical-protein
MRIVHGKDPATWSKEERDNALLYGLGPRFAAAAAARGIPRPPGGSGYYQPTGIEPYEPVDLGGGQIEWRAKPDYRPRGD
>NZ_CP053068.1|WP_003878580.1|1117665_1118100_+|hypothetical-protein
MTDMAYRMSPRVEMLAVKDQNGIIWHHYQRPVGGARNLGPIIAWIGPDYRDRWLRMGLIEEIPDDAAAALSQPPPSDAVAGPNTDLVDECIAALDRFDVPADAGAPTARKALRDRGQAWGNETIAAAVRARKARAAPSGTPAGS
>NZ_CP053068.1|WP_003878579.1|1118168_1118399_+|hypothetical-protein
MQVLNSSEGLGDAAGVDIVVNNSGGCSLDPQTGIRLKPGEFFVFSLRQPSNGRPLPLYAVAAGPGGQLTITIVSQE
>NZ_CP053068.1|WP_003875305.1|1118628_1118811_+|hypothetical-protein
MDSDAIQCQRLVALATHHALDGMSEHPGQLRQDPITALLNQCRRARAGQDAGMDYMHVPF
>NZ_CP053068.1|WP_073578985.1|1118789_1119098_-|hypothetical-protein
MDGKRWAVAADICAALDIRNSRDAVTRLDEADVATTDIRSGGQIRKVTVVSENGATDLILDSRKPEARRFRRWLTHEVWPAIRDTGSYSTAPPLTDQNGTCM
>NZ_CP053068.1|WP_003875307.1|1119464_1119983_-|hypothetical-protein
MTKTDWVITFTFDVDPPIETMDEWESRLDGFDASVARIPDRGVDLTVYAPGDLSMFDALNKTINEVAHVVQSGPPIGLEVVTEREHTRRAEAPSMPELMSAAEIADELGVRRQRVHQLRATSAFPAPLAELRGGAVWDAAAVRKFAQDWQRKPGRPRNSAVDSQQRDYALGH
>NZ_CP053068.1|WP_003875308.1|1119979_1120231_-|hypothetical-protein
MNSDIADIAKWARSQGWTVFDDSKGYTRFYNPQGEYITNYPATPSRPNRRMADLKVDLKKAGLPIPPPSKKEQRAQRKKGDTK

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Crispr_ID: NZ_CP053068_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053068_5

1289780-1289857

Orphan

Consensus_repeat	Method
TGGCCGCCGGCGCGGCGGCCGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053068_5

>merge|NZ_CP053068|5|1289780-1289857|CRISPRCasFinder
TGGCCGCCGGCGCGGCGGCCGCCATCACCCGCGGCGCCGGTTCGGTGTGCGGCGTGGCCGCCAGCGCGGCGGCCGCCA

>NZ_CP053068|5|5|1289780-1289857|CRISPRCasFinder
TGGCCGCCGGCGCGGCGGCCGCCA	TCACCCGCGGCGCCGGTTCGGTGTGCGGCG
TGGCCGCCAGCGCGGCGGCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053068.1\|WP_003875482.1\|1292374_1294015_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|273517
NZ_CP053068.1\|WP_003875484.1\|1295069_1295672_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP053068.1\|WP_003875478.1\|1286486_1286819_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234904
NZ_CP053068.1\|WP_003875491.1\|1300602_1301799_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP053068.1\|WP_003875490.1\|1299413_1300598_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173841
NZ_CP053068.1\|WP_003875476.1\|1284541_1285234_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP053068.1\|WP_175285408.1\|1298848_1299394_-\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379194
NZ_CP053068.1\|WP_003878484.1\|1286829_1288569_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235624
NZ_CP053068.1\|WP_003875486.1\|1296857_1297319_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239539
NZ_CP053068.1\|WP_003875487.1\|1297315_1298437_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|224871
NZ_CP053068.1\|WP_003878490.1\|1270589_1271708_+\|succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|236119
NZ_CP053068.1\|WP_019306507.1\|1271789_1274174_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP053068.1\|WP_003878486.1\|1282543_1283731_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_CP053068.1\|WP_003875474.1\|1281416_1282469_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_CP053068.1\|WP_003875483.1\|1294014_1294977_+\|proline-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223580
NZ_CP053068.1\|WP_003875472.1\|1280804_1281050_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003875481.1\|1290697_1292290_-\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP053068.1\|WP_003875488.1\|1298444_1298849_-\|Zn-ribbon-domain-containing-OB-fold-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP053068.1\|WP_003875473.1\|1281216_1281420_+\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl\|CDD\|378324
NZ_CP053068.1\|WP_003878485.1\|1285230_1286490_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235227

Protein	Function_ID	Function_description	E-value
NZ_CP053068.1\|WP_003875484.1\|1295069_1295672_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.36428e-13
NZ_CP053068.1\|WP_003875478.1\|1286486_1286819_+\|hypothetical-protein	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0.00254532
NZ_CP053068.1\|WP_003875491.1\|1300602_1301799_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.89468e-104
NZ_CP053068.1\|WP_003875490.1\|1299413_1300598_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.30181e-131
NZ_CP053068.1\|WP_003875476.1\|1284541_1285234_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	5.6653e-111
NZ_CP053068.1\|WP_175285408.1\|1298848_1299394_-\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	gnl\|CDD\|379194	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. It is clear from the structures of bacterial members of MaoC dehydratase, pfam01575, that the full-length functional dehydratase enzyme is made up of two structures that dimerize to form a whole. Divergence of the N- and C- monomers in higher eukaryotes has led to two distinct domains, this one and MaoC_dehydratas. However, in order to function as an enzyme both are required together.	1.31167e-15
NZ_CP053068.1\|WP_003875487.1\|1297315_1298437_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	3.21961e-56
NZ_CP053068.1\|WP_003875482.1\|1292374_1294015_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|273517	TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate. [Energy metabolism, Amino acids and amines].	0
NZ_CP053068.1\|WP_003875486.1\|1296857_1297319_-\|MaoC-family-dehydratase	gnl\|CDD\|239539	cd03455, SAV4209, SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.	2.21397e-50
NZ_CP053068.1\|WP_003878484.1\|1286829_1288569_-\|AMP-binding-protein	gnl\|CDD\|235624	PRK05850, PRK05850, acyl-CoA synthetase; Validated.	0
NZ_CP053068.1\|WP_003878490.1\|1270589_1271708_+\|succinyldiaminopimelate-transaminase	gnl\|CDD\|236119	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed.	0
NZ_CP053068.1\|WP_019306507.1\|1271789_1274174_+\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	4.45482e-28
NZ_CP053068.1\|WP_003878486.1\|1282543_1283731_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.29583e-52
NZ_CP053068.1\|WP_003875474.1\|1281416_1282469_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	3.504e-55
NZ_CP053068.1\|WP_003875483.1\|1294014_1294977_+\|proline-dehydrogenase-family-protein	gnl\|CDD\|223580	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism].	3.57775e-65
NZ_CP053068.1\|WP_003875481.1\|1290697_1292290_-\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	6.50171e-33
NZ_CP053068.1\|WP_003875488.1\|1298444_1298849_-\|Zn-ribbon-domain-containing-OB-fold-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	3.59727e-30
NZ_CP053068.1\|WP_003875473.1\|1281216_1281420_+\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl\|CDD\|378324	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB. VapB is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is VapC, pfam05016. The family contains several related antitoxins from Cyanobacteria and Actinobacterial families. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the Toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all antitoxins.	1.56358e-07
NZ_CP053068.1\|WP_003878485.1\|1285230_1286490_+\|sulfate-adenylyltransferase	gnl\|CDD\|235227	PRK04149, sat, sulfate adenylyltransferase; Reviewed.	0

>NZ_CP053068.1|WP_003878484.1|1286829_1288569_-|AMP-binding-protein
MHGSSVVSLMRERAGLQPDDVAFRYTDYEQDWAGVAETLTWAQLYQRTSNLAREVARHGDTGDRAVILAPQGLSYIVAFLAAIQAGLIAVPLSVPQPGSHDERVSAVLADTGPAVVLTTAAAAATVTEYLRRPDTGPAPAVVEIDSLDLDEPNSSSIRISAAPDIAYLQYTSGSTRLPAGVMVSHRNLQVNFQQLMAAFFPDFDGVAPRNTVCVSWLPFYHDMGLVQGVIAPILGGYPADLTSPVAFLQRPARWIQAMSRADPVFSAAPNFAFELAVRKTTDADLAGVDLGNIISIVSGAERIHPATLRRFCKRFAPYNFHEHMMQPSYGLAEATVYVASRAEAGGPEVVHFEPEKLSAGSAQRCPAQTGSPLLSYGAPTSPTVRIVDPDTNTERADGTVGEIWVNGENVAQGYWRKPEETRRTFGGVLVNPSPGTPRQPWLRTGDLGFISAGELFIVGRMKDLLIVYGRNHYPEDIESTVQAVTGGRVAAISVPADETEKLVTIIELKRRGDSDEDARRKLDAVKNEVTAAISNSHGLNVADLVPVAPGSIPTTTSGKIRRAACVEHYLRGAFIRLDG
>NZ_CP053068.1|WP_003875478.1|1286486_1286819_+|hypothetical-protein
MSSDHDNNGKAIKINVWINEERLEALANAGMAELANEAFAGMKLLEIHTTEEQKNIVLQRFPGAKYDSSTTRSIELLPKQAKDRLLELSIAMHSTGPDVMGRFLEETEPA
>NZ_CP053068.1|WP_003878485.1|1285230_1286490_+|sulfate-adenylyltransferase
MNYTGHNGKPLVERVSTENAAARIEGLPRVPISKATAHEVISLSYGFFTPLTGFMGRREVDATLDEFALPDSTLWSIPIVFDMSADDIAERDVKEGASVVLDYLGVPMAILDVTEIYEYDLERMAEKTYGTTDPRHPGVKKTLGYHNRFIGGDITLINEPVFNEPFKSFWLTPRQHQDALAAKHWHRVVAHQTRNVPHTGHEALMKQAWLAANEDQPVDSLNTGVLVNAIIGQKRVGDYIDEAILLAQNALRTSGYFRENVHMVSFTLWDMRYAGPREAIFHAILRTNLGCTHHMFGRDHAGVGDFYHPYDSQNILKQYRNQLGIKPVFLRENWYCPVCLEVTNSALCGHEAQAQSFSGSLIRSILTDEVKPTQKVMRHDVFEVVMECAAKHGQGSPFVTEEYLANRLPVFTLNQLEGS
>NZ_CP053068.1|WP_003875476.1|1284541_1285234_+|adenylyl-sulfate-kinase
MSNNITWHEHKISRGEREQLNGHKGCVIWFTGLSGSGKSTVANVVEQKLYERGIRSYLLDGDNVRYGLNAGPDLLEERHGPEFAQRFGLGFSAQDREENIRRIGAVAKLFCEAGIIALTAFISPYVRDRDAIRATLDDGDFQEIFIDTPIEICEKRDPKGLYKKARAGEIKGFTGIDDPYEAPPRPELRLDGAAKDAETLAEEVIAHLERVGVIATDGLAHTRGRDEVTA
>NZ_CP053068.1|WP_003878486.1|1282543_1283731_-|PPE-family-protein
MLDYGALPPEINSTRMYAGPGSAPLIAAAAAWDVLANALETAARGYSAVITRLHGESWSGSASVAMAGAAAPYFAWLAEAGTQAEEAAGQARAAAAAYEAAFGATVPPAVVTANRALFAQLVASNILGQNTAAIGEAEGAYAEMWAQDAAAMYGYAAASSGATRLRPFDEPPRTTNADGPGAQAAAVARSATGSAANQSHASLSRAMSAVPHQLQTLSGAGSSGSSSSSSGSSALSAVDNFNTLTAPVNLGDGISRTVTSGGTFGTGLFRSNLQSAGEAFKAVPGAAAAAGTSTAAGVPGPAVAGAGTATTVGRLSVPQSWAATNPAAGTVAEPLWLSDAELDGGPSWHEGPAAGMWNGAPAAGASSSLLSRPSVNNVLRVAPRQFKMPRPSAGG
>NZ_CP053068.1|WP_003875474.1|1281416_1282469_-|PPE-family-protein
MLDFGALPPEINSARMYSGPGSGPLTAAAAAWEELAAQLESYAAGYSATLAELRGPAWSGDAAAAMAAAVEPYVAWATGTAARAGQAAAQARAAAAAHEAAFAATVPPHVVAANRIQLATLIATNFFGQNAPAIAATESCYAEMWAQDATAMYGYAAASSAATTLTPFTHPPRTTTAHGQAAQAAAVSHAADSQPPGWSSLVDSVSGFNTVVTTPGQSFFAAARTLLGWGQFGTGLNLANIQAAKAAAGAVRLPAAVAGPSVSGGLGRAATVGRLSVPPAWPAANPVAPLGETVMRQPGGMVRLVSGSAPDSPAGPGIPPALRTADRSAGVPVLRNGRRAFRMPRPAYGG
>NZ_CP053068.1|WP_003875473.1|1281216_1281420_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MKKTVEIEVDVNMIDDAIRRFHLADAREAVNLALRTLIDDAGPGHHDGEFGDLGPWRGPEDIATNTG
>NZ_CP053068.1|WP_003875472.1|1280804_1281050_-|hypothetical-protein
MAICDTCGNDYDKAFTVTWTDGRSATFDSVECAAVELAPTCEHCECRILGHGVESGGAMFCGAHCARQAGNHDVSDRGAAG
>NZ_CP053068.1|WP_019306507.1|1271789_1274174_+|amino-acid-permease
MTSSTGNLRIPLSFGDVAKRVFLGKPLITEDIASEKLSNGVALGALSPDAVSSVAYGPEQILIELLPHAGLAAFLLLLPITGVILLILVLVAASYRQVVMAYTRAGGSYIVARDNFGPRVAQIAAAALLIDYVVTVAVQSAAGTVAVVSAIPVLGPYSLAITVGVVLVICYANLRGLREAGMPFAVATYSFIVMVGLTIVIGVVRAVIGNLPIYDPAHLAGTVPVHQGNGLVLGATILVLLRAFANGGSSLTGVEAISNTVDYFRKPQGRNARRVLTAMASILGFLLAGVAYLAHVTHATPYLTEYPSVLSQIGHAVYGGGVVGDIFFVMVQASTAAILFTGANTSFNGFPALASFVAEDRFLPRQLTKRGHRLVFSNGIITLTALSVALLVATGGSVNALVPFYAIGVFSGFAMAGYGMTKHHLTHREAGWRHRLTINLSAAVLSTIVVGIFAVAKFTEGAWLVVVVFPLLVFVLTRLNREYRAEAAILEMFRTDRPELVKYARHKVLVFVDSVDLAVIEALRYGRGLRADELVAVHFMVDPAHAAQLRNRWDHFSLDTPLRIVDCPDRRISRSAQLMVAKVRDEHPNTNVTVLLPRRTFARLLGRLLHDRTADKVARAVSQIPDAAATIVPYDVESRIREAYPDTFEQRIAKELDKIQAWVSQDEDQKVAAYEHPARSSAVIMVAGLISGQRATIEGRVSEVEDVAERGGTRRRIVVGDSSGEITVIFHHGHGGADIQPGQLLRISGKARQAGQRELSMVDPAYEVIEDPAREAEESGDSEESGDSQRADKK
>NZ_CP053068.1|WP_003878490.1|1270589_1271708_+|succinyldiaminopimelate-transaminase
MPHQLRKRRPAVSAALPEFPWDTLAEAKALAGSHPDGIVDLSVGTPVDPVAPVIQQALAAAGSASGYPATAGTARLRDSAVAALARRFGVVGLTEASVLPVIGSKELIAWLPTLLGLGPADLIVVPELAYPTYDVGARLAGAWVLRADSLTQVGPQSPALYYLNSPSNPTGRVLGVDHLRKVVAWARDRGCLVASDECYLGLGWDAQPLSILHPQVCDGDPTGLLAIHSLSKSSSLAGYRAGFVAGDAELIAELLAVRKHAGMMVPTPVQAAMVAALDDDAHERTQRQRYERRRAALLPALRSAGFAVDHSEAGLYLWVTRGEPCRDTITWLARRGILAAPGEFYGPRGAQHVRVALTADDERIAAAVRRLA
>NZ_CP053068.1|WP_003875481.1|1290697_1292290_-|PucR-family-transcriptional-regulator
MAGVGLGQLLLALDATMVSLVDAPRGLDQPVASAALIDSDDVRLGLAAAAGSADVFFLLGVGDDEALRWIDTQARDRVPVAVFVKEPSDALVGTAVAAGSAVVAVDPRARWERLYQLVNHVLEHHGDRADAADDSGTDLFGLAQSLAERIHGMVSIENAQSQVLAYSASNDEADELRRLSILGRAGPPEHLEWIGQWGIFDALRSGTQVVRVAERPELGLRPRLAVGIHQPDPDARRPPVFAGTIWVQQGAQPLADDAEQILRGAAVLAARIMARLAARPSTQARRLQQLLGVTDSETLAPVDLTAIAAELGLAADGCAALIGWAAAEGASRHTRLTDVIALSASAFRHDAHVAGHGSRTYVLLPQPPNRSVSSWVRGTIAALRAELGVQLRAVIAAPVPGLSAVAAARAEVDRVLDSAERHPLSFGQVTSLAEARTTVLLDEIVTLVGRDERLVDPRIVALHDREPVLAQTLRTYLDAFGDIAAAAHALRVHPNTVRYRVRRIEKLLSVSLADPEVRLLFALALRVAER
>NZ_CP053068.1|WP_003875482.1|1292374_1294015_+|L-glutamate-gamma-semialdehyde-dehydrogenase
MDAITGISEVPVPANEPVHDYAPRSAERARLRAELAALAGHPIDLPHVIGGRHRMGDGERIDVVQPHRHAAKLGTLTNAVHADATAAVDAAMAAKSDWAAMPFDERAAVFLRAADLLAGPWREKIAAATMLGQSKSAYQAEIDSPCEQIDFWRFNVAFARQILAQQPISGPGEWNRSDYRPLDGFVYAITPFNFTSIAGNLPTAPALMGNTVVWKPSITQTLSAYLTMQLLEAAGLPPGVINLVTGDGFAVSDVALADRRLAGIHFTGSTATFQRLWYQVGTNIGHYHCYPRLVGETGGKDFIVAHASARPDVLRTALIRGAFDYQGQKCSAASRAFIAQSVWRRMGDEFLAETAALRYGDVTDLTNFGGALIDRRAFVKNVDAIERAKGAPHVTLAVGGEYDDSEGYFVRPTVLLSDDPADESFATEYFGPLLSVHVYPDDDYQRILDVVDTGSRYALTGAVIADDRAAVLAAQDRLRFAAGNFYVNDKPTGAVVGRQPFGGSRGSGTNDKAGSPLNLLRWTSARTIKETFVPATDHTYPHMAAD
>NZ_CP053068.1|WP_003875483.1|1294014_1294977_+|proline-dehydrogenase-family-protein
MAGLFAHTLRPAILAAGRRPGLRRAAEALPVTRRVVHRFIAGETIDSALDSVTALRDSGRCVSVDHLGEDVSDADDADAAVRVYLELVDRLGCLGDGAAVRPLEVSLKLSALGQSLDRDGEKIARENAWAICAAAQRAGVWVTVDAEDHTTTDSTLRIVRDLRREFDWLGVALQAYLRRTLGDCEEFAAAGARVRLCKGAYDEPASLAYRDPAAVTDSYLRCLRVLMAGSGYPMVASHDPAIIEAAPSLARESGRGTGEFEYQMLYGIRDDEQRRLAEAGHTVRVYVPFGTQWYGYFMRRLAERPANLTFFLRALAARRH
>NZ_CP053068.1|WP_003875484.1|1295069_1295672_-|TetR/AcrR-family-transcriptional-regulator
MSTDATPATDTRELIVAAAFTCFGRQGLQKATIVDIAKQAGVSRSTIYEYFSDKAAIVEACAEHASERFYREMAKAMDRGGTLEERLCAAAVFVTQARRVIASEKYFDEDAISLLLTKDAAVLLRECVEFFAPYLAAARLTGEVRKDLDVEAAGEWFARILFSLFSTPSPTLNLDDPDVTAEFVRAHVVRGFASERPRRR
>NZ_CP053068.1|WP_003875486.1|1296857_1297319_-|MaoC-family-dehydratase
MTRTANRTLRWQDISVGEEVTPLEIPITTTMIVAGAIATRDFMPVHHDRDYAKKQGSPNLFMNILTTNGYCVRFLTDWAGPEAMVKKLSIRLGVPCFPDDPLRFTGSVTGKTRGPAGPPPAENFVEVTFKASNSLGDHVSGTAVLSLLDGAGS
>NZ_CP053068.1|WP_003875487.1|1297315_1298437_-|acyl-CoA-dehydrogenase-family-protein
MDFSFTEEQETIGKLARDLFERRATPERLTELEVGDTRHDAALWEELAAADLLGAALPEAVGGSCASGGGFVELGVLLAEVGYGVAPVPAYATLVLGADSIARHGSSEQQQRVLPGVIAGSRILTAGLAEPGRSDPARPATTARRDGPNWRLDGAKELVPAAQLADTMLIPAVLDDGDVGLFLLAADAAGVEIRPVPTTNREPHADVFLAGARVSETDRIAGIGLVESLLTRALVALCAIQLGVVERALRIAAKYTTGREQFGRPIGSFQAVQQRMADAFIDVEAIRWTTWQAAWLVAHGRPADRAARIAKFWAAEAGARVAATAQHVHGGIGIDVTYPLHRYFLWAKHNELTLGPASAQLAHLGATYSEGHA
>NZ_CP053068.1|WP_003875488.1|1298444_1298849_-|Zn-ribbon-domain-containing-OB-fold-protein
MAARLAPAITADTEFFWNGLRENKLLIQRCSGCGQLRHPPRPMCPHCRSLDWEAVESSGRGTVYSYVMPHEPKFPFFEYPYIVVLVELEEGVRLVSNLTGIDPAEVTPGLPVEVYYQTFDGSQNLVLHQFRPSA
>NZ_CP053068.1|WP_175285408.1|1298848_1299394_-|MaoC-family-dehydratase-N-terminal-domain-containing-protein
MTDSETVSAKVRALVGQPTGGTGKPSLAPDPVNQPMIRHWAYAMADMNPVYLDPEFAASSRFGGIVSPPVMLQTWTMPSPKLEGIGERGGAPVEIDSSPTAFLDEAGYTSTVATNSEFEFERYPRLGDVISATTVYESVSDEKKTALGTGFFLTWLTTYTDQNGEVLGRQRFRVLRFRPAG
>NZ_CP053068.1|WP_003875490.1|1299413_1300598_-|acyl-CoA-dehydrogenase-family-protein
MDLEYTPEQQQLRAEIRATLQTVMTPERVAAVSEQMDGGPAVRECVRALAAANLLGVGWPKEYGGRGFSAIEQFIFAEEARRVSAPIPLVTLNTAGPTLMHYGTDEQKRRFLPAILDGTVEFAIGYSEPGAGSDLASVHTTAVRVGDEYVINGQKMFTSGAAYADYIWLAVRTDPDAKKHKGISILIVPTSSPGFSWQPLHTMPGISTFYTFYDDVRVPVSALVGAENQGWQLITTQLNFERAALGNLGALEPLFDKTLDWALSTELDGGRVIDQPWVRSALARVEAQVAAYKLVNLRVNAAMTKGALNMGEASAAKVFGTELTQQVARELLEVLDGNGVRRGAEAPLRGALESAYRQAVINTFGGGANEIQRDIIAMAALGMPRAPRDLRAAN
>NZ_CP053068.1|WP_003875491.1|1300602_1301799_-|cytochrome-P450
MQTHPPLRSPSFPLHSPDFYAGNPYPAYRELRATAPVCWNDVTNFWALLKYEDIRFVSSNPALFTSTRGITIPDPQLPNPVQQGSLIFTDPPRHRQLRKLINSGFTRRRVSVLEPKIRKIVRGILDGIERGAVHEFAEQIAAPLPTRMIAELIGAPPDDWEQFRAWSDAATGTADPEIELDPAVAAGQLYEYFQRLIAARRARPRADLLSVLAEAEIDEHRLTDEDLLNFAFLLLVAGNETTRNLIALGTLALIAHPDQYRLLVEEPARIPLAVEEMLRWNSPVVHMARTATADVEIRGQRIRAGEVVVMLYGSANRDEDVFGPDSEEFDVTRHPNPHIAFGCGEHSCVGAQLARLEATVFFEELLRRYPRIELVGEVDRMRATMVPGVKRMPVRMGA

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Crispr_ID: NZ_CP053068_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053068_6

2272658-2272764

Orphan

Consensus_repeat	Method
CGTTCGAGTGCCGCTTCGGCGTACGGCGCGCCGCGTTCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053068_6

>merge|NZ_CP053068|6|2272658-2272764|CRISPRCasFinder
CGTTCGAGTGCCGCTTCGGCGTACGGCGCGCCGCGTTCGGCGGCCGTGCTGGCCAATTCGCGGCCGCGTTCGAGTGCCGCCTCGGCGTACGGCGCGCCGCGTTCGGC

>NZ_CP053068|6|6|2272658-2272764|CRISPRCasFinder
CGTTCGAGTGCCGCTTCGGCGTACGGCGCGCCGCGTTCGGC	GGCCGTGCTGGCCAATTCGCGGCCG
CGTTCGAGTGCCGCCTCGGCGTACGGCGCGCCGCGTTCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053068.1\|WP_175285426.1\|2277805_2279134_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP053068.1\|WP_003876741.1\|2280061_2280904_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP053068.1\|WP_003876755.1\|2265092_2266316_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP053068.1\|WP_003876749.1\|2271698_2272277_+\|zeta-toxin-family-protein	unknown	unknown	gnl\|CDD\|226648
NZ_CP053068.1\|WP_003878038.1\|2274833_2275184_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|379266
NZ_CP053068.1\|WP_003878044.1\|2263753_2264362_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_003878033.1\|2279130_2280075_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP053068.1\|WP_003878032.1\|2280906_2281977_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP053068.1\|WP_010948702.1\|2262312_2263533_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP053068.1\|WP_010949351.1\|2276804_2277740_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236600
NZ_CP053068.1\|WP_003876756.1\|2264369_2264999_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP053068.1\|WP_003876746.1\|2274019_2274820_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|366932
NZ_CP053068.1\|WP_003876752.1\|2268709_2270707_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|367273
NZ_CP053068.1\|WP_010949355.1\|2270703_2271198_+\|gluconokinase	unknown	unknown	gnl\|CDD\|225804
NZ_CP053068.1\|WP_003876738.1\|2281984_2282953_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132846
NZ_CP053068.1\|WP_003878042.1\|2271278_2271668_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314732
NZ_CP053068.1\|WP_003878040.1\|2273459_2274020_+\|pyrazinamidase-PncA	unknown	unknown	gnl\|CDD\|238493
NZ_CP053068.1\|WP_010948702.1\|2275503_2276724_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP053068.1\|WP_003876754.1\|2266413_2267079_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053068.1\|WP_015632643.1\|2267173_2268691_+\|carboxylesterase/lipase-family-protein	unknown	unknown	gnl\|CDD\|225181

Protein	Function_ID	Function_description	E-value
NZ_CP053068.1\|WP_175285426.1\|2277805_2279134_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.00698e-74
NZ_CP053068.1\|WP_003876741.1\|2280061_2280904_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.10088e-86
NZ_CP053068.1\|WP_003876755.1\|2265092_2266316_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.09966e-79
NZ_CP053068.1\|WP_003876749.1\|2271698_2272277_+\|zeta-toxin-family-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	9.75582e-70
NZ_CP053068.1\|WP_003878038.1\|2274833_2275184_-\|DoxX-family-protein	gnl\|CDD\|379266	pfam13564, DoxX_2, DoxX-like family. This family of uncharacterized proteins are related to DoxX pfam07681.	5.93423e-10
NZ_CP053068.1\|WP_003878033.1\|2279130_2280075_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.0871e-94
NZ_CP053068.1\|WP_003878032.1\|2280906_2281977_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP053068.1\|WP_010948702.1\|2262312_2263533_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.25636e-53
NZ_CP053068.1\|WP_010949351.1\|2276804_2277740_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236600	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional.	1.03023e-57
NZ_CP053068.1\|WP_003876756.1\|2264369_2264999_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.10708e-09
NZ_CP053068.1\|WP_003876746.1\|2274019_2274820_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|366932	pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain. This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	1.10058e-08
NZ_CP053068.1\|WP_003876752.1\|2268709_2270707_+\|phosphotransferase	gnl\|CDD\|367273	pfam02958, EcKinase, Ecdysteroid kinase. This family includes ecdysteroid 22-kinase, an enzyme responsible for the phosphorylation of ecdysteroids (insect growth and moulting hormones) at C-22, to form physiologically inactive ecdysteroid 22-phosphates.	2.61926e-23
NZ_CP053068.1\|WP_010949355.1\|2270703_2271198_+\|gluconokinase	gnl\|CDD\|225804	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism].	1.0697e-68
NZ_CP053068.1\|WP_003876738.1\|2281984_2282953_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132846	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomonas. Even though VipD shows high sequence similarity with several functional regions of ExoU (e.g. oxyanion hole, active site serine, active site aspartate), it has been shown to have no phospholipase activity. This family includes ExoU from Pseudomonas aeruginosa and VipD of Legionella pneumophila.	3.46279e-64
NZ_CP053068.1\|WP_003878042.1\|2271278_2271668_+\|hypothetical-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	2.39865e-14
NZ_CP053068.1\|WP_003878040.1\|2273459_2274020_+\|pyrazinamidase-PncA	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	4.54161e-71
NZ_CP053068.1\|WP_010948702.1\|2275503_2276724_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.25636e-53
NZ_CP053068.1\|WP_015632643.1\|2267173_2268691_+\|carboxylesterase/lipase-family-protein	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	0

>NZ_CP053068.1|WP_003876749.1|2271698_2272277_+|zeta-toxin-family-protein
MERLDVVVGPNGAGKSTFIALTLAPLLPGSVVVNADEIARQRWPQDPASHAYDAAKVAADTRAKLIDLGRSFIAETVFSHPSKLDLLHAARRAGFTVVLHVLLIPEDLAVERVRHRVRAGGHDVPETKIRERHRRLWTPVAEAMTLADLATGYDNSRLRGPRVVARLSGGLTVGAVDWPAWAPETLRSRWPV
>NZ_CP053068.1|WP_003878042.1|2271278_2271668_+|hypothetical-protein
MAEAVDRVTRVASDLMDSAAAEGARQSRSAKQQLDHWARVGRAVSSQHTASRRRVEAALAGRLSTAEITAEEGVVFNAEISAAIDESLARTNYGATLAGQGVTTVALNDDGEIVEHRPDGTAVVLAGRR
>NZ_CP053068.1|WP_010949355.1|2270703_2271198_+|gluconokinase
MSGSAPVVVMGVSGSGKSTVGVTLARRLRVPFVDADTLHPPANIAKMAAGTPLGDDDRRPWLDEVGEWLAAHRDGGVAACSALKRAYRDRLRAHCPDVAFLHLSGSAALLGPRLAARSGHFMPAALLQSQLDALEPLGPDEAGLTVDAGREVDSIVDVVLRARR
>NZ_CP053068.1|WP_003876752.1|2268709_2270707_+|phosphotransferase
MHAETEQVIERPSDLSASWLAAVIGTGPIADFSVERIGTGQMSECYRIRLRYAQADARGPESVVLKVAATDPVSRQTGLALGLYEREVRFYGDLAPRLGGPIAPCYHAAVDTSTGVFDLLLGDAGPAVVGDEIAGATIEQARLGVVELGRLHGPLLGDISLAQAPWLNRDAPLNQAMIAPLYAGFVERYGDQIAPEHRAVCERLVAAFDGYLAQEPGVRGLVHGDYRLDNMLFGTAGAERALTVVDWQTVSWGPALTDLAYFLGCALPAKDRREHYDALLRAYHEALGPQPPITLADVADGVRRQSFFGVMMAIVSSMLVERTDRGDQMFMTMLRRHCDHVLDTDALATLPAASAPEPLRPSPEDELAHDPTTEPLWSESWYADFADPAQGLGGWFRLGLVANQQTAWVHALVCGPDMPTVAVDAQVPLPPDPWTVRTDTFEITHSAGAPLRSYRVDVRALAQAYADPAALLRGEPGTPVAMTMNLDWHTDGTPYKYAMTTRYEIPCTVTGSVTIGDTAYRIESVAGQRDHSWGVRDWWSMDWIWSALHLDDGTHLHGVNIRIPGAPAFSIGYTQGADGEVTELQTVDSRESFGDNGLPLDATLELNPGEITAQVDVRGQAPVRLVAADGRVSQFPRVWAAVSTGDGRRGVGWLEWNRNLGERIG
>NZ_CP053068.1|WP_015632643.1|2267173_2268691_+|carboxylesterase/lipase-family-protein
MHDRTVRARTATGIVEGFTRDGVHRWRSIPYARPPVGDLRFRAPQPAQPWSGVRHCHGFANCAPQQRRYTLLGLSGLGGRYQPMSEDCLTLNVVTPEAPAEGPLPVMVFIHGGGYFLGSSATPLYDGAALARRGCVYVSVNYRLGALGCVDFSSLSTPEIPLESNLYLRDLVLALQWVRDNIAEFGGDPDNVTIFGESAGACITATLLAVPAAKGLFAQAISESPASGLVRSQEVAAEFANRFANLLGVRRQDAANALMQASAAQLVKTQHRLIDEGMQDRLGAFPIGPVVGDDILPTDPVEAMRRGEAHRVPLIVGTNAEEGRLFTRFLAMLPTNESMVEELLADAEPAVRERITAAYPNYPDRSACIQLGGDFAFGSAAWQIAEAHCAHAPTYLYRYDYAPRTLRWSGFGATHATELLAVFDVYRTRFGALLTAAADRRAALRVSNQVQRRWRAFSRTGVPGEDWPRYTAAERAVLVFDRKSRVEFDPHPHRRMARDGFSLAR
>NZ_CP053068.1|WP_003876754.1|2266413_2267079_-|hypothetical-protein
MIAASVLVAGCAHTTGGRSEPTPSGAATPSGSAAGPSSSKPPGPSAAPAAGAAMSDVITWIEAGHPADPSRYHTATRDGVATPLGDDIAVSALAGKVSCMTDAKHTGGAVVCLVSLTHPAPPPATAYGQWQGGWVDFDGTSLQVGSARADPGPFVNGNGTELANGDSLAFGEYRCRADQAGLYCVNYAHQSAAKLSPAGVEPFGCLRSTPPPDGVGAAFSC
>NZ_CP053068.1|WP_003876755.1|2265092_2266316_+|cytochrome-P450
MSISFETSESRADAELPVLPMPRAAHCPLAPPPEFVDWRQQPGLRRALFQGNPVWVVSRYHDIRAALVDPRLSAKTIPDSIMPTDADNKVPVMFARTDDPEHHRLRRMLTGNFTFRRCESMRPQIQDTVDHYLDRMLDGGAPADLVREFALPVPSLVIALLLGVPPEDLELFQFNTSKGLDQKSSDEEKGKAFGAMYAYIEELVQRKAREPGDDLISRLITEYVATGQLDHATTAMNSVIMMQAGHETTANMISLGTVALLGNPEIYARLGQTDDSAVVANIVEELMRYLSIVHSQVDRVATEDLTIAGQLIRAGEFVVMNLPAGNWDTEFVDNPESFDADRNTRGHLGFGYGVHQCIGANLARVEMQVAFATLARRLPGLRLAVPPEQLKFKDANIYGMKELPVSW
>NZ_CP053068.1|WP_003876756.1|2264369_2264999_-|TetR/AcrR-family-transcriptional-regulator
MTAVEDRPLRSDAARNVERILRAAREVYAELGPDAPVEAVARRAGVGERTLYRRFPAKADLVRAALDQSIDEDLTPVIDSARHAKDPLHGLTRLVEAAISLGAREQNLLAAAHRAGSLTSDISVSLNEALGELVREGQRAGRIRADLVADDLPRLVAMLYSVLSTMDAGSEGWRRYVALVVDAISVDERRPLPPAAALRYASQPNSWPL
>NZ_CP053068.1|WP_003878044.1|2263753_2264362_+|hypothetical-protein
MTKVRTAALGLTATAVLVGAAVVGCGGDKNPAASSSPAASTPSAASPSSAAPADYSNLLIKPGDVGPNVTADGPPSQNPSGITGVGQVFKNPDGKRTIMDTIAVFPDPATAAQTAANMRDVVGKKVNGPQQPIDIGSNGFMVIGQGSDPANPMEISEAVFVEGRAMVDLESDCVIGNPTPADVLLDLARKQDAAVKAGLPAG
>NZ_CP053068.1|WP_010948702.1|2262312_2263533_-|IS110-family-transposase
MTVTEVVVAQPVWAGVDAGKADHYCMVINDDAQRLLSQRVANDEAALLELIAAVTTLADGGEVTWAIDLNAGGAALLIALLIAAGQRLLYIPGRTVHHAAGSYRGEGKTDAKDAAIIADQARMRHDLQPLRAGDDIAVELRILTSRRSDLVADRTRAINRMRAQLLEYFPALERAFDYNKSRAALILLTGYQTPDALRSAGGARVAAFLRKRKARNADTVAATALQAANAQHSIVPGQQLAATVVARLAKEVMALDTEIGDTDAMIEERFRRHRHAEIILSMPGFGVILGAEFLAATGGDMAAFASADRLAGVAGLAPVPRDSGRISGNLKRPRRYDRRLLRACYLSALVSIRTDPSSRTYYDRKRTEGKRHTQAVLALARRRLNVLWAMLRDHAVYHPATTTAAA
>NZ_CP053068.1|WP_003878040.1|2273459_2274020_+|pyrazinamidase-PncA
MRALIIVDVQNDFCEGGSVPVAGGAAVAPAINAYLDDAPGYDYVVATQDFHIDPGDHFSDRPDYSSSWPVHCLAGSAGADFRPELDTTRVDAVFRKGAYAAGYSGFEGVDDNGTPLLEWLRRRGVDEVDVVGIATDHCVRRTAEDAARAGLTTRVLVDLTAAAAQDSAARALDEMRSAGIELVGVR
>NZ_CP053068.1|WP_003876746.1|2274019_2274820_+|nuclear-transport-factor-2-family-protein
MVAPLDRQQLLAAVERSPQAAAEHDRAAWVALFTPDGRIEDPVGSRPHLGRTQIGRFYDTFIAPRDIRFHRDLDIVFGTTVLRDLELEVAMGPAVTMYIPAFLRYDLRETNGEWLIGALRAYWELPAMMVQFLRSGPGAARPAVDLCRGLLRNQGWRGSAGFMAGFRRVGAPHQRLVRRFLDAVAAGDKFAAAQALSSTAAITLGDRDPIELAELAEQLAGAGLTKMNSAGPAVAVSLHSGHGRAIMFADVAWRANAINRIRYFPA
>NZ_CP053068.1|WP_003878038.1|2274833_2275184_-|DoxX-family-protein
MNTVFVGIILFTAAITAAIAVADFVPARFVLANSAEVGVPRSWLPALGAAKLAGAAGLVVGLLGLPALGIAAAAGLVVFFVGAVLTHLRAGVLYNIAFPGAYLCLSAASLAWMALR
>NZ_CP053068.1|WP_010948702.1|2275503_2276724_+|IS110-family-transposase
MTVTEVVVAQPVWAGVDAGKADHYCMVINDDAQRLLSQRVANDEAALLELIAAVTTLADGGEVTWAIDLNAGGAALLIALLIAAGQRLLYIPGRTVHHAAGSYRGEGKTDAKDAAIIADQARMRHDLQPLRAGDDIAVELRILTSRRSDLVADRTRAINRMRAQLLEYFPALERAFDYNKSRAALILLTGYQTPDALRSAGGARVAAFLRKRKARNADTVAATALQAANAQHSIVPGQQLAATVVARLAKEVMALDTEIGDTDAMIEERFRRHRHAEIILSMPGFGVILGAEFLAATGGDMAAFASADRLAGVAGLAPVPRDSGRISGNLKRPRRYDRRLLRACYLSALVSIRTDPSSRTYYDRKRTEGKRHTQAVLALARRRLNVLWAMLRDHAVYHPATTTAAA
>NZ_CP053068.1|WP_010949351.1|2276804_2277740_+|sigma-70-family-RNA-polymerase-sigma-factor
MNAPRNLAELAQRFDDDRRHLRSVAFQLLGSLADADDAVQSAWLKASRADFAAVDNLSGWFTTITAREALDQLRARKRRAELPLAAPEELDRLAVPASSPADEDTLLAESVSTALLVVLDRLSPAQRVAFVLHDVFAMPFETIAELLNRSPDAAKKLASRARARLASFAPAGPPRRDGHRIERHVEVVQAFLAASRGGDIAALLQLLAPDVLRTVDPVLVPADVPTALRGATRVAQETRRFAGRARAGAVMLIDGTPGIVIAARGRAQILLMIGIGADDRIHTIDITGDPERIRRATLALPPAGRFRNITT
>NZ_CP053068.1|WP_175285426.1|2277805_2279134_+|sugar-ABC-transporter-substrate-binding-protein
MLDRPFGRRSLLRGAGALSAAALAPWSAGCGSDDDGALTFFFAANPEERDARMRIIDEFARRYPDIKVRAVLSGPGVMQQLSTFCVGGRCPDVLMAWELSYAELADRGVLLDLGPLLARDKAFAQQLQADSIPALYETFTFNGKQYALPEQWSGNYLFYNKRLFDEAGVPSPPAAWEHPWGFSEFLNAARALTKRDASGRAAQYGFVNTWGSYYSAGLFAMNNGVPWSDPRLNPTHFNFDNAAFQEAVQFYADLANKYRVAPNGSETQSMSTPNLFAVGRAAMALGGHWRYQTYLRAEGLDFDVAPLPVGPAVGKGQPACSDIGATGLAISSSSPRKEQAWEFVKFATGPVGQALIGESCLFVPVLRSALKSDGFARAHRRVGNLGVLTDGPAFSQGLPITPAWEKVNALMDRNFGPILRGSRPATSLAGLSRSVDEVLRSP
>NZ_CP053068.1|WP_003878033.1|2279130_2280075_+|sugar-ABC-transporter-permease
MTALDTGAGRRTPKNPSPWRRHAWAGRLFVAPNMVAVAVFMLFPLGFSLYMSFQRWDVFTPPKFVGLKNFTDLFSSDPLFLIAIRNTVIFTLGSVVPTVAISLAVAGVLNQKVRGIGIFRTIVFLPLAISSVVMAVVWQFVFNTDNGLLNIMLGWVGLGPVPWLVEPRWAMASLCIVSVWRSVPFATVVLLAAMQGVPETVYEAARIDGAGEIRQFFAITVPLIRGSISFVVIISIIHAFQAFDMVYVLTGPSGGPESATYVLGIMLFQHAFSFLEFGYASALAWVMFAVLLVLTVVQLRVSHRRSLETSRGLK
>NZ_CP053068.1|WP_003876741.1|2280061_2280904_+|carbohydrate-ABC-transporter-permease
MGSSEAVIKRTVLRAATVYAALLGIAWCALFPIAWAVSGSLKTEGEVSEPTLVPARPRWSNYTEVFALMPIGRMFVNTVLYAGCVTAGHVFFCSLAGYAFARLDFRGRNTLFVVYLGTLMVPLTVTVIPQFLIMRTLGWVDTPWAMIVPGFFGSAFGTYLMRQFFRTLPTDLEEAAILDGCTPWQVYWRILLPHARPAVMVLAVLTWVNVWNDFLWPLLMIQRSSLATLTLGLVRMKGEYVARWPVLMAASMLIMLPLVIIYAIAQRSFVRGIAVTGMGG
>NZ_CP053068.1|WP_003878032.1|2280906_2281977_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MASVTFQQATRRYPGADRPALDNLNLIVGDGEFVVLVGPSGCGKTTSLRMVAGLETVDSGRILIGDRDVTNVDPKQRDVAMVFQNYALYPHMTVAQNMGFAMKIAKIPKAQIRERVLDAAKLLDLQPYLDRKPKDLSGGQRQRVAMGRAIVRRPQVFLMDEPLSNLDAKLRVQTRNQIAALQRRLGTTTVYVTHDQVEAMTMGDRVAVLRDGVLQQFAPPRELYRNPSNVFVAGFIGSPAMNLFTLQVVDSAVSLGDWPIALPREIAAAASEVVVGVRPEHFELGGLGVEMEVDVVEELGADAYLYGRITGSGKVIDAPIVARVDGRNPPEKGSRVRLHPAPGHLHFFGRNGQRIG
>NZ_CP053068.1|WP_003876738.1|2281984_2282953_+|patatin-like-phospholipase-family-protein
MVNTVRADLVCEGGGVRGIGLVGAVDALAAAGYRFPRVAGSSAGAVVASLVAALQTAGEPLSRLTDIMRTIDYRKFLDRNLIGHVPVIGGGLSLLTSDGVYRGAYLEQLLAGLLGDLGVRTFGDLRTGEAPEQFAWSLVVTASDLSRRRLVRIPWDLGSYGIDPDDFPVARAVHASSAIPYVFEPVRVGGATWVDGGLLSDFPVELFDRPDGQPQWPTFGIRLSARPGIPPTHPVHGPVSLGIAAIETLVSNQDNAYIDDPCTVRRTIFVPAEDVSPIDFDITAQQREALYERGRQAGQQFLQTWNYADYLKACGGPVPETP

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Crispr_ID: NZ_CP053068_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053068_7

2347906-2348004

Orphan

Consensus_repeat	Method
CGGTTGCGGCCCGACCCCCAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053068_7

>merge|NZ_CP053068|7|2347906-2348004|CRISPRCasFinder
CGGTTGCGGCCCGACCCCCAGCGGCCGGCACACGTTGGCCGTCGGGTCCCACCATTGGCCCGGGTCGCAGGCCAACGGTTGCGGCCCGACCCCGAGCGG

>NZ_CP053068|7|7|2347906-2348004|CRISPRCasFinder
CGGTTGCGGCCCGACCCCCAGCGG	CCGGCACACGTTGGCCGTCGGGTCCCACCATTGGCCCGGGTCGCAGGCCAA
CGGTTGCGGCCCGACCCCGAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053068.1\|WP_003877981.1\|2356997_2357555_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP053068.1\|WP_003876693.1\|2345439_2345877_-\|cellulose-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366161
NZ_CP053068.1\|WP_003876681.1\|2354567_2354888_+\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|365959
NZ_CP053068.1\|WP_003876698.1\|2340367_2340955_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP053068.1\|WP_003877991.1\|2347448_2347760_+\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
NZ_CP053068.1\|WP_003876691.1\|2346896_2347298_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319943
NZ_CP053068.1\|WP_175285427.1\|2350270_2351446_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NZ_CP053068.1\|WP_003876684.1\|2352845_2353280_+\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|365807
NZ_CP053068.1\|WP_175285428.1\|2354941_2356459_-\|acyltransferase	unknown	unknown	gnl\|CDD\|334202
NZ_CP053068.1\|WP_010949324.1\|2340975_2341860_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP053068.1\|WP_015632646.1\|2348146_2348602_+\|DUF899-family-protein	unknown	unknown	gnl\|CDD\|377584
NZ_CP053068.1\|WP_003877997.1\|2339450_2340254_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|224717
NZ_CP053068.1\|WP_003876683.1\|2353340_2353721_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NZ_CP053068.1\|WP_010949319.1\|2353826_2354255_+\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|365807
NZ_CP053068.1\|WP_003876687.1\|2348798_2350274_+\|biotin-carboxylase	unknown	unknown	gnl\|CDD\|180605
NZ_CP053068.1\|WP_010949323.1\|2342004_2343825_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223953
NZ_CP053068.1\|WP_003877986.1\|2351442_2352672_-\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234960
NZ_CP053068.1\|WP_003876692.1\|2346100_2346943_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NZ_CP053068.1\|WP_003876694.1\|2344547_2345258_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181044
NZ_CP053068.1\|WP_003877995.1\|2343848_2344502_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|188314

Protein	Function_ID	Function_description	E-value
NZ_CP053068.1\|WP_003877981.1\|2356997_2357555_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	8.29746e-24
NZ_CP053068.1\|WP_003876693.1\|2345439_2345877_-\|cellulose-binding-domain-containing-protein	gnl\|CDD\|366161	pfam00553, CBM_2, Cellulose binding domain. Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria.	1.7951e-36
NZ_CP053068.1\|WP_003876681.1\|2354567_2354888_+\|J-domain-containing-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	1.64292e-18
NZ_CP053068.1\|WP_003876698.1\|2340367_2340955_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	4.0985e-08
NZ_CP053068.1\|WP_003877991.1\|2347448_2347760_+\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	2.03424e-11
NZ_CP053068.1\|WP_003876691.1\|2346896_2347298_+\|VOC-family-protein	gnl\|CDD\|319943	cd08355, TioX_like, Micromonospora sp. TioX and similar proteins. Micromonospora sp. TioX is encoded by a gene of the thiocoraline biosynthetic gene cluster. Thiocoraline is a thiodepsipeptide with potent antitumor activity. TioX may be involved in thiocoraline resistance or secretion. TioX belongs to vicinal oxygen chelate (VOC) superfamily that is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	9.45478e-32
NZ_CP053068.1\|WP_175285427.1\|2350270_2351446_+\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	2.55221e-33
NZ_CP053068.1\|WP_003876684.1\|2352845_2353280_+\|Hsp20-family-protein	gnl\|CDD\|365807	pfam00011, HSP20, Hsp20/alpha crystallin family. Not only do small heat-shock-proteins occur in eukaryotes and prokaryotes but they have also now been shown to occur in cyanobacterial phages as well as their bacterial hosts.	1.25581e-29
NZ_CP053068.1\|WP_175285428.1\|2354941_2356459_-\|acyltransferase	gnl\|CDD\|334202	pfam00668, Condensation, Condensation domain. This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyzes a condensation reaction to form peptide bonds in non- ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pfam00550). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site.	9.46861e-20
NZ_CP053068.1\|WP_010949324.1\|2340975_2341860_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	5.39546e-32
NZ_CP053068.1\|WP_015632646.1\|2348146_2348602_+\|DUF899-family-protein	gnl\|CDD\|377584	pfam05988, DUF899, Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.	1.73757e-18
NZ_CP053068.1\|WP_003877997.1\|2339450_2340254_-\|CoA-transferase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	8.21411e-37
NZ_CP053068.1\|WP_003876683.1\|2353340_2353721_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	3.81576e-38
NZ_CP053068.1\|WP_010949319.1\|2353826_2354255_+\|Hsp20-family-protein	gnl\|CDD\|365807	pfam00011, HSP20, Hsp20/alpha crystallin family. Not only do small heat-shock-proteins occur in eukaryotes and prokaryotes but they have also now been shown to occur in cyanobacterial phages as well as their bacterial hosts.	1.78097e-29
NZ_CP053068.1\|WP_003876687.1\|2348798_2350274_+\|biotin-carboxylase	gnl\|CDD\|180605	PRK06524, PRK06524, biotin carboxylase-like protein; Validated.	0
NZ_CP053068.1\|WP_010949323.1\|2342004_2343825_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	1.22826e-180
NZ_CP053068.1\|WP_003877986.1\|2351442_2352672_-\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234960	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional.	4.78078e-176
NZ_CP053068.1\|WP_003876692.1\|2346100_2346943_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	6.87823e-15
NZ_CP053068.1\|WP_003876694.1\|2344547_2345258_-\|SDR-family-oxidoreductase	gnl\|CDD\|181044	PRK07577, PRK07577, SDR family oxidoreductase.	4.13567e-138
NZ_CP053068.1\|WP_003877995.1\|2343848_2344502_-\|HD-domain-containing-protein	gnl\|CDD\|188314	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.	4.24561e-11

>NZ_CP053068.1|WP_003877991.1|2347448_2347760_+|DUF732-domain-containing-protein
MIGAVLVVGAGIAAATPQDDAYLAQLRAAGLTWPPKTEEALIAEAHDVCYDLTWGWTPQQIADDLHARLDNKGVTLLDVGSLVNAAHNIYCPGNVCDAPSLCT
>NZ_CP053068.1|WP_003876691.1|2346896_2347298_+|VOC-family-protein
MTASNPTVWLTLQAHNVPKLIDYYVETFGFVLTARYGDGETVDHAQLNWPEGSGGIMLGSHKPGAEWCREPGTAGGYVVTADPDALYRRVRQHNADIIRPLAETDYGAREFTVRDPEGNLWSFGDYGGANPPN
>NZ_CP053068.1|WP_003876692.1|2346100_2346943_+|AraC-family-transcriptional-regulator
MVGYRTLDVPEGVHRGMPSSMLTFIVSLDDGVEAADTATALPAARPTPLILGGLHLRASHVRQRRGQAGVQLAVHPLASRALFGLPSAEIPVADYDATAVLGRDIVDLHHRVAEAHRWPDVFALVAQYLIDARRRRDGATVRPEVLHAWHLLQRSRGLMPVTALADAVGVTTRHLATLFRREVGHSPKTVAMLMRFQHATGLIAESARRHGRVDLARVAADTGYSDQAHLSREFVRFAGVPPQRWLAEEFRNIQDGGHSLGSQWEHDCFESDRLVDTASP
>NZ_CP053068.1|WP_003876693.1|2345439_2345877_-|cellulose-binding-domain-containing-protein
MAGLDNHLKRCRTALHGAVSAVIVAVVAVLGLAIAPVADAAAPMATLTVEHTWQTGFIARFAITNSSTVPLSDWKLEFDMPAGQSVLHTWNSTLTQSGTHYVLTPANWNRVIAPGGSATGGFRGVLTGTYSPPTNCVLNGQYRCT
>NZ_CP053068.1|WP_003876694.1|2344547_2345258_-|SDR-family-oxidoreductase
MPSRRVLITGASRGIGRAVADRLAEGGHEPIGLARSAPKDFPGEFYEVDLADPYATAATLDKIVGHAAVHAVVNNVGFARFGRLGSIELDHLFDTYNLNVRAAVQVVQAALPGMLDAEWGRIVNVTSLTTLGTPERTPYAAAKAALEACTRIWAGELASAGITVNAVAPGPTETDMYRERSPVGSAREARFLQSIPLHRVARPREIAHAICFLLDEDAGYITGQILRVDGGGSIAA
>NZ_CP053068.1|WP_003877995.1|2343848_2344502_-|HD-domain-containing-protein
MTTTSSIETIADIAIPDTALVREITEFIRDAEDDLLFHHSRRVFLFGALQGRRRGLQPDLELLYAGAMFHDLGLTERYRDSALRIEVDGANAAREFLLHRGVSKADADKVWLGIALHTTPGVPEFLDPEIALVTAGVETDVVGVGRDDLAPEALAAVIATHPRPDFKTRILQAFNDGMKHRPHSTFGTMNADVLEHFDPTFARDNLVDLILNNGWPE
>NZ_CP053068.1|WP_010949323.1|2342004_2343825_+|long-chain-fatty-acid--CoA-ligase
MTHAPASRPTTLCEAFQATAAKHPDAVALRTLGDATTITWRQYRDRVRAIAAGLAGLGVGNGDTVALMMSNRPEFHLCDTAVLHTGATPFSVYNTNPPELLAYQFDNADNHVVICEGTFMPQVLAAAQQGGTVEHVVCVDGAANGAIGLDQLEASPAAGFDFERSWRAVGPDDVLTIVYTSGTTGPPKGVELTHTNFIENARITEEVGGITHADRAVSYLPDAHAANRWITHYQNLLYGLQITTVGDFKAVLPALTEVRPTLFLGVPRVWIKAKAGLEAAVDAEPAGKRALAKWAFGVGRARARAVSDGRPVGLAEKLRYAFADRLVLSKVRRRLGMDRLRIGVTGAAPIPREVHEFVLGLGIPVCEGYGMTECTAGATVNRPERIKIGMVGTPVPGTEVTVASDGEVLVRGKNVMRGYRKAPEKTAEAIDSDGWLHTGDIGEIDEDGYLRIVDRKKELIINAAGKNMSPTNIENTIAASCPLAGPVVVIGDARAYNTALITLDPDSVTEYAHAHGLSGSLRELVRNPAVRAEIEKGMAAANRRLSRVEQIKRYTVLADVWEPGSQYLTPTAKLKRKPIATGYAAQIDAMYTEQGKRSAGHSAASD
>NZ_CP053068.1|WP_010949324.1|2340975_2341860_-|alpha/beta-fold-hydrolase
MFREPRVAYDATTVATHDGAQLHVRSYGSAFGQPIVLIHGFGCRIEYWNPQINALAAKYRVIAYDQRGLGRSTLGSDGVRPDVLGRDLAAVLDAVLAPGERAVLVGHSFGGITIMAWAQRFAAHAVSAVLLANTIAERFSATTMLLPFADRYRHIRRPLITALAGSTMTLPSIRWSRWPLQRMALSRYADRQAVDFVYEILADCRTDVRAVWGAGLSGLDVTAGLEKLTVPTTVVTGTEDRLTPPAVAHRIAETLQGRGSLHRFARFPRAGHCTNIEVPYAFNAEIEQLADATR
>NZ_CP053068.1|WP_003876698.1|2340367_2340955_+|TetR/AcrR-family-transcriptional-regulator
MTNPRATNEDLTAKARIRNAALDLYAQYGEDRISLRDIASAAGVTLGLVQHHFKTKAGVRDAVDQLVVDYFAHALAQVPAEGSARHVAAARDEAVARMLRDNPPVVNYVRRAVLDPSEDRLHLLDALIELTRREITALRGSGMASTKRPESTQILGVLIRQMGELLLQPMVDAVWDRVAKPTDARKPRLRITVEN
>NZ_CP053068.1|WP_003877997.1|2339450_2340254_-|CoA-transferase
MQPLIGVTVVSLAVNLPGPLAAARLAELGAAVTKVEPTAGDPLAAAAPDWYAHLVEHQDVLTLDIKDAADRAKLDELLAGADLLITSMRPSALHRSGLARPQQKFPRLSLIEIVGHHGERAETPGHDLNYQAVQGTLTPPHMPKVPIADVLGAERAVSSALAALLQAAKAGAGQRYRVVLEEAAARAGDAVRYGLMGEGAVLGGAYPGYGIYASADGYVALGAIEPHFSRARARCSAPTGVTKAWVRRSRPRPPPSWKTLRGIWIFP
>NZ_CP053068.1|WP_015632646.1|2348146_2348602_+|DUF899-family-protein
MVGLPSLLPVIEPSPGLRVKAIGQVAGDGPAAKPSDEFVAAHRSAYKHKVGNRMDWYSSSQSTFGADMDAPPGGGFAVNVFLRDGDTVYRTWHTNGRGTEQLSHSFGLIDILPWGRQEEWQDSPHGWPSRPTHSGWPDSPAIARAYGPNDG
>NZ_CP053068.1|WP_003876687.1|2348798_2350274_+|biotin-carboxylase
MTHAGEPQPRRVLNGLSDIRAFFHTNSVPLYFISPTPFNLLGIDRWIRNFFYLTYFDSFEGIHSRVFVPRRRDRIDFDSMGDVCNHLLRDPETLEFIAGRGPGGKACFVMMDEETQALARQAGLQVMHPPVELRNRLGSKTVMTRLADEAGIPSVPHVMGRAGSYQELLTLAQDAGLGDDLVISIPYGAAGSGTFFVRGQRDWDEHAGDLTAQQEFKVMKRIRNVEVCLEGAVTRHGTVIGPAMTSLVGYPELTPHRGAWCGNDIWREVLPPGQTHAARQMVGKLGDILSREGYRGYFEVDLLHDLDSDELYLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYELDIEGINARWERGYGEDEVWGQVILAETSPDVELFTATPRTGVWRIDDDGRVSFSRTANDWATLLDGSEAFYMRVAAPGDLRSEGAQLGVLVTRGHLQTDDYRLTERCQRWVKGMKAKFASTPLAPATPIVSRLVARA
>NZ_CP053068.1|WP_175285427.1|2350270_2351446_+|serine-hydrolase
MNAPAGISLDNWLSPPYARWSFQHVEDFVPTAVIARGTGPVVAIPAAPSELAEIRVAVTDGTASTVGAVMAGTATDGWAVAHRGAMIAEHYLEGMRRQTRHLLFSVSKSLVAAVVGALHGAGTIELDAPVTKYIPALANCGYAGATVRHLLDMRSGVAFSENYDDPAAQIHLLDQAVGWAPNHRPDAPATLRDFLRTLRQKSVHGGPFEYRSCETDVLGWICEVAADQPMPALMSELLWSRIGAQRDATIAVDPAGTGFFDGGISACLTDMIRFGSLFLREGVSLTGRRVLPEAWIADTLRGGPDSRQAFAASPDDNEMPGGMYRNQMWLPYPGDNVLLCLGMCGQMIYVNRAAEMVAAKVSTQPHSHEPHMLDTMSAFDAIAYRLAGRTD
>NZ_CP053068.1|WP_003877986.1|2351442_2352672_-|tRNA-4-thiouridine(8)-synthase-ThiI
MHMQCCVLLKYGEMVLKGGNRRWFEQWLLTNLDDALSAWPPGHRPAVRRRGGVLVLFTSPALQDELVALARNLIGISLVQPVWRVPRSARAAETAAVELLRDHRTQDGAPTFAVRCHRRDKRFGLSSEQLAARIGARVRADLGWRVDLSHPELELTVEVDRREIFLGTRTHPGQGGLPVGSSGRAVVLLSGGFDSPVAAYRAMRRGLACDFLHCTGAPFTDASSTYKAYALVRQLTRFQPRCRLYVAAVGRAQRTLAASGAGEAQIVAQRRLYLRLACGLAERIGAQAVVTGDSLGQVASQTLPNLAATEQAATLPVLRPLLGFDKQEILAEARRIGTAEIAMLPDQDCCQLFLPRRVATHAAVDQLLPVEARAGVDTLVGNLLDRMQRFDFGTEAAGVESAATASRVG
>NZ_CP053068.1|WP_003876684.1|2352845_2353280_+|Hsp20-family-protein
MLRFDPFFRDIDRLTQQLWGAVPWGTAAQPALVPMDAWRDGEKFVVEFDLPGVLPESLDVNVEHDVLTVRAERPAIDEDRNGVVSERPRGVFSRQVYLGHGLDTDNIHADYVDGVLRLTIPVAEAAKPRKIEVAAGKHQRAINA
>NZ_CP053068.1|WP_003876683.1|2353340_2353721_-|helix-turn-helix-transcriptional-regulator
MRGDPTPRSARGVYGISVASELSGIPPQTLRHYERRGLLTPARSDGGTRRYSDDDLARLKRISQLVDQGVNLVGVAHILDLESKNDQLKADYSALELLNAKLKTRQNPERAAAPRQCRGEARREAV
>NZ_CP053068.1|WP_010949319.1|2353826_2354255_+|Hsp20-family-protein
MNHGVDAYRSVPRPRPVWTQQVLGTAARPAVMPMDAWRDGDQFVVEFDLPGVNADSLDLDVERNVLTVRAERPDLDQNREMVSAERPRGVFSRQLFLGDNLDTDKIEANYHDGVLRLTIPVAEKAKPRRIEINHNHKTAINA
>NZ_CP053068.1|WP_003876681.1|2354567_2354888_+|J-domain-containing-protein
MTNPYLVLGVSPTATQAEITRAYRRHLRAHHPDTSPPDSATEGSERLSEILAAYALLRDPARRADYDREHRVHQRIRPAVTRVTRIESADEQPPLRAGPVRWHRRY
>NZ_CP053068.1|WP_175285428.1|2354941_2356459_-|acyltransferase
MVTFGTVHNWDPGTGSVISRHATPAAREKARQAPISDVPASYQQLHHLRRFSEHAARGLDMARLNIGVWDISGVCDVAAMTEAINAHLRRHDTYHSWFEHRTDGRIVRHTFADPADIEFAALQRGEMTPTELRAHILATPNPLRWDCFTFGLVQHPDHFTFYMSADHLVIDGMSVGVIFLEIHLTYAALVSGGRPLPLPEPASYHDYCRRQHQHTEALTLQSPQVRAWIRFAQDNGGTLPSFPLPLGDPSVPCGSGVVVAPLMDESQTERFDATCTKAGARFSGGVVACAAFAEYELTGAETYCAITPYDHRSTPAEFVTPGWFASFIPVTVPVAGASFGDAVIAAQASFDSAIGLADVPFDRVLELSSFGGRISKPTGDVHMLSFADARGIPFSGQWDGLNAGIYGDGRSSDQVLMWVNRFDTETTLTVAFPQNPVARDSVERYIRAVRAMCLRVVEHGAAAVPNRRRVVAAVNASAARSTANAADRTDRRLQGAGFGANPVLR
>NZ_CP053068.1|WP_003877981.1|2356997_2357555_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MNSVRTFSAAAFAACFTAAAAMLAGAGTAGAADSCPTAAPPSGGTPDWTLTGTTGSVAVTGSTDTAAPVVNVTAPFSVTQTQVHTLRAGDGPAVPGTARVSVCYMGVNGRDGTVFDSSYQRGAPVDFPLGGVVPGFQKAIAGQKVGSTVAVAMTSADGYPDGQPSAGIRPGDTLVFAIKILGATT

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Crispr_ID: NZ_CP053068_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053068_8

3027239-3027319

Orphan

Consensus_repeat	Method
CCGCCCTACCCCGCTTCGCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053068_8

>merge|NZ_CP053068|8|3027239-3027319|CRISPRCasFinder
CCGCCCTACCCCGCTTCGCGGCGCAGGGCCGACGCGGCCAGGTCCATTTGTGTCGCGTCCGCCCTACCCCGCTTCGCGGCG

>NZ_CP053068|8|8|3027239-3027319|CRISPRCasFinder
CCGCCCTACCCCGCTTCGCGGCG	CAGGGCCGACGCGGCCAGGTCCATTTGTGTCGCGT
CCGCCCTACCCCGCTTCGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053068.1\|WP_015632674.1\|3035090_3036581_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP053068.1\|WP_010949097.1\|3018159_3019626_+\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_CP053068.1\|WP_003872543.1\|3025468_3026494_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP053068.1\|WP_003877623.1\|3034082_3035045_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_CP053068.1\|WP_003877629.1\|3021094_3022372_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_CP053068.1\|WP_003877628.1\|3023211_3023919_+\|LppX_LprAFG-lipoprotein	unknown	unknown	gnl\|CDD\|369238
NZ_CP053068.1\|WP_003877627.1\|3028692_3029640_-\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP053068.1\|WP_003872537.1\|3020101_3020566_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|371225
NZ_CP053068.1\|WP_085978450.1\|3026490_3027198_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|235515
NZ_CP053068.1\|WP_003877631.1\|3019729_3020068_+\|hemophore-related-protein	unknown	unknown	gnl\|CDD\|275322
NZ_CP053068.1\|WP_003872542.1\|3023915_3025472_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP053068.1\|WP_003877626.1\|3029797_3030622_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225136
NZ_CP053068.1\|WP_003872540.1\|3022493_3023093_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP053068.1\|WP_003872548.1\|3030627_3031113_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP053068.1\|WP_003872549.1\|3031240_3033265_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_CP053068.1\|WP_003877630.1\|3020562_3021045_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP053068.1\|WP_003872554.1\|3038038_3039301_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_CP053068.1\|WP_003872555.1\|3039322_3039649_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|188073
NZ_CP053068.1\|WP_003877624.1\|3033292_3034084_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|226237
NZ_CP053068.1\|WP_003872553.1\|3036730_3037942_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374

Protein	Function_ID	Function_description	E-value
NZ_CP053068.1\|WP_015632674.1\|3035090_3036581_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.26556e-115
NZ_CP053068.1\|WP_010949097.1\|3018159_3019626_+\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	4.74241e-54
NZ_CP053068.1\|WP_003872543.1\|3025468_3026494_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.6881e-103
NZ_CP053068.1\|WP_003877623.1\|3034082_3035045_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.80059e-86
NZ_CP053068.1\|WP_003877629.1\|3021094_3022372_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP053068.1\|WP_003877628.1\|3023211_3023919_+\|LppX_LprAFG-lipoprotein	gnl\|CDD\|369238	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein. This entry consists of several lipoproteins mainly from Mycobacterium species, collectively known as the LppX_ LprAFG family. Proteins in this entry include LprG, LppX, LprF and lprA.	7.28135e-89
NZ_CP053068.1\|WP_003877627.1\|3028692_3029640_-\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	1.33235e-157
NZ_CP053068.1\|WP_003872537.1\|3020101_3020566_-\|PH-domain-containing-protein	gnl\|CDD\|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	1.40191e-17
NZ_CP053068.1\|WP_085978450.1\|3026490_3027198_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|235515	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.	7.84998e-136
NZ_CP053068.1\|WP_003877631.1\|3019729_3020068_+\|hemophore-related-protein	gnl\|CDD\|275322	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family. Members of this family occur as paralogs in most Mycobacterium strains, including 2 in M. tuberculosis, 6 in M. avium, and 9 in M. smegmatis. Members have a cleaved N-terminal signal peptide and exactly two Cys residues in the mature protein, both at invariant positions. The best characterized member, Rv0203, is a hemophore, that is, a secreted polypeptide that binds heme and delivers it to a transport system for import. Hemophores are protein analogs of siderophores, natural products that chelate non-heme iron and deliver it to receptors for transport. The unrelated HasA family of hemophores has been described in Gram-negative bacteria such as Yersinia pestis and Pseudomonas aeruginosa. [Transport and binding proteins, Other].	1.78997e-09
NZ_CP053068.1\|WP_003872542.1\|3023915_3025472_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.16841e-34
NZ_CP053068.1\|WP_003877626.1\|3029797_3030622_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	2.65228e-23
NZ_CP053068.1\|WP_003872540.1\|3022493_3023093_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	3.62239e-107
NZ_CP053068.1\|WP_003872548.1\|3030627_3031113_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.26182e-20
NZ_CP053068.1\|WP_003872549.1\|3031240_3033265_-\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP053068.1\|WP_003877630.1\|3020562_3021045_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	6.43474e-64
NZ_CP053068.1\|WP_003872554.1\|3038038_3039301_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_CP053068.1\|WP_003872555.1\|3039322_3039649_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|188073	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit. This small component of highly purified E. coli RNA polymerase is not required for transcription, but acts in assembly and is present in stochiometric amounts. The trusted cutoff excludes archaeal homologs but captures some organellar sequences. [Transcription, DNA-dependent RNA polymerase].	1.34715e-19
NZ_CP053068.1\|WP_003877624.1\|3033292_3034084_-\|lysoplasmalogenase	gnl\|CDD\|226237	COG3714, COG3714, Predicted membrane protein [Function unknown].	8.9362e-37
NZ_CP053068.1\|WP_003872553.1\|3036730_3037942_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0

>NZ_CP053068.1|WP_085978450.1|3026490_3027198_-|ribulose-phosphate-3-epimerase
MALMPCNTGQPRGPLIAPSILSADFSRLADEAAAVTGADWLHVDVMDNHFVPNLTIGLPVVQSLLATTTIPMDCHLMIENPDRWAPPYAEAGAHNVTFHAEATDNPIGVARDIRAAGAKAGISVKPGTPLEPYLEILPQFDTLLIMSVEPGFGGQSFIPEVLGKVRTARKLIDAGELTILVEIDGGINADTIEQAAEAGVDCFVAGSAVYGADDPAAAVEALRRQALGASQHLRR
>NZ_CP053068.1|WP_003872543.1|3025468_3026494_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTASLGDRLDAAMHLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAGGTVVVTLEPCNHHGKTPPCVDALLEAGVGTVVYAVADPNPQAAGGAGRLQEAGVTVRSGLLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEASRLDLHRRRAAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREILSEAKVLNEESRTMVIRTHDPAEVLKAVSDRTDVLLEGGPTLAGAFVRAGLVNRILVYLAPTLLGGPVTAVDDVGVPTIAKALRWQFDGVDRVGPDLLLSLVPRSG
>NZ_CP053068.1|WP_003872542.1|3023915_3025472_+|MFS-transporter
MTAQTGRRVAISAGSLAVLLGALDAYVVVTIMRDIMTDVHIPINQLQRITWIITMYLLGYIAAMPLLGRASDRFGRKLVLQVSLALFMVGSVVTALAGHWGDFHLLIGGRTIQGVASGALLPVTLALGADLWAQRNRAGVLGGIGAAQELGSVLGPLYGIFIVFLFHDWRYVFWINVPLTLIAMVMIQFSLPSHEKVEQPEKVDLVGGVLLAVALGLAVIGLYNPEPDGKQILPSYGLPLVLGAVVVGILFLLWERFARTRLIEPAGVHFRPFLAALGASLFAGAALMVTLVDVELFGQGVLGQDQTQAAGLLLWFLIALPIGAVLGGWIATRVGDRAMTFVGLLIAAYGYWLIHYWRQDVLSQKHNVLGLFSVPVLHADLLVAGVGLGLVIGPLTSAALRVVPSAQHGIASAAVVVARMTGMLIGVAALSAWGLYRFNQIVANLTAAIPPNASLLERIAAQGTMYLKAFAMMYGDIFAATVVICIAGALLGLLIGGRKEHAEEPEIVEPQAVSLGER
>NZ_CP053068.1|WP_003877628.1|3023211_3023919_+|LppX_LprAFG-lipoprotein
MQTRRRLSAVFASLTLATALIAGCSSGSKQSGAPLPDPTSLVKQSADATKNVKSVHLVLSIQGKISGLPIKTLTGDLTTTPATAAKGNATITLGGSDIDANFVVVDGTLYATLTPNKWSDFGKASDIYDVSVLLNPDNGLGNALANFSNAKAEGRETINGQSTIRISGNVSADAVNKIMPQFNATQPVPSTVWVQETGDHQLVQANLQKSSGNSVQVTLSNWGEQVQVTKPPVSS
>NZ_CP053068.1|WP_003872540.1|3022493_3023093_-|riboflavin-synthase
MFTGIVEELGEVTARDVLADAARLTIRGAVVTADAGHGDSIAVNGVCLTVAELLPDGRFSADVMGETLNRSNLGALQVGSRVNLERAAAVNSRLGGHIVQGHVDGTGRIVARTPSEHWEVVRIEVPPEVARYVVEKGSITVDGISLTVSGLGGEPRDWFEVSLIPTTRELTTLGGAPVGTQVNLEVDVIAKYVERLMSR
>NZ_CP053068.1|WP_003877629.1|3021094_3022372_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MTRLDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAVNQDKHGTAYTVTVDARNGVGTGISASDRATTMRLLADPTSIAEDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAQTDELRVFADEHDLAMITIADLIEWRRKHEKHIERIAEARIPTRHGEFRAIGYTSIYEEVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRTNAENIRYLMTKRDKMGHDLAGLDDFHESVHLPGEFGGAL
>NZ_CP053068.1|WP_003877630.1|3020562_3021045_-|6,7-dimethyl-8-ribityllumazine-synthase
MSPAAGVPEMPALDASGVRLGIVASTWHSRICDALLAGARKVAADSGVDNPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFEYVCDAVTQGITRVSLDASTPVANGVLTTDNEQQALDRAGLPESAEDKGSQAAGAALSAALTLRELRARS
>NZ_CP053068.1|WP_003872537.1|3020101_3020566_-|PH-domain-containing-protein
MTPPEPERWDVVLRPHRTPLFVYGAAVLIAAAHIALGLLLKVGSTGVVFRTSDQVAIAVLGLVIAGVVLLFARPRLRIGPAGVSVRNLLGDKLIEWPDVVGVSFPVGHRWARIDLPDDEYIPVMAIQAVDKGRAVDAMDTVRSLLARYRPDLQG
>NZ_CP053068.1|WP_003877631.1|3019729_3020068_+|hemophore-related-protein
MMKRSLAKLAVTVGGLALASTAGAGVASADPDYGPMINTTCSYDQAMRAVHAENQMAAQYLDQSPPNQQFLQQYLASSPDQRVNLLHAIEHNQGAQQALPIFQQMMTDCTRY
>NZ_CP053068.1|WP_010949097.1|3018159_3019626_+|PPE-family-protein
MTMPIWAAFPPEVHSAALSSGPGPGSLLAAEQAWQALSAEYASAAAELGDLLAAVQAGTWQGPSAEAFVAAHVPYLAWLLQNSTNSTAAAREAETVAAAYTAALSAMPTLEQLATNHAVFAQLVATNFFGVNTIPIAQNEIEYLQMWLQAATTMAIYEAVSETAMTWKPPTAPPPQIQKTGVANQDAGGGPTQLSWWVTRVQEVARAISGDLSQSPSNPSATLSDLMSDPLLATEVPHWAGESLLYFTPQVPQLTQLSFGLIAPFIPAAGAPGVAGLAGLAGLAGGAPAPVLPGVAAAPSGGGAAAVLAPGPGASAATVSPAPAPAGMPATAPAPVGPPTPPPATGVPGFSAPYAVGPPGLGAGGNLSAGTRAGQTSPDFATAAAPAAADRREQVRRRRRPRPGRIDPGYRHEYLDTDPGGGPASVTASDRGAGPIGFAGTTGATGSAPVGLTTVAGDALDDGPRMPLLPGSWSAETEDPENGQVGGG
>NZ_CP053068.1|WP_003877627.1|3028692_3029640_-|methionyl-tRNA-formyltransferase
MRLVFAGTPEPALPALRRLLDSPRHEMIAVLTRPDAASGRRGKPEPSPVAREALDRGIPVLRPARPNSPEFVAELAQLAPDCCAVVAYGALLRDELLAVPPHGWINLHFSLLPAWRGAAPVQAAIAAGDIITGASTFRIEPALDSGPIYGVVTEAIRPTDTAGELLARLAVSGAELLSATLDGIADSTLTPRPQPAEGVSIAPKITVEQARVRWDLPAPVVERRIRAVTPNPGAWTVISDLRIKLGPVRLGAASDLPAPPEPLPPGAIHVDRKSVWVGTGSDPVRLGQIQPPGKKFMNAVDWARGARLDPAARAT
>NZ_CP053068.1|WP_003877626.1|3029797_3030622_+|class-I-SAM-dependent-methyltransferase
MTLDTTTADASVAARHRTVWALGDYALMAEEVMAPLGPTLVEAAGIGPGVRVLDVAAGSGNITLPAAAGASVVSTDLTPELLQRSRDRAAGMGLTIDYREANAQALPFGDGEFDAVVSAIGVQFAPDHQRAADELVRVCRPGGRIGLISWTPEGFFGRMLATIRPYRPSLSHPVPPAALWGRPGYVRALLGERIGEITTARGMLPVNRFGSAEDVHAYFKQHYGPTIEAYANIGHNRVLAAELDAQLVELAAQHLSDGTMGWEYLLVTAEKRSG
>NZ_CP053068.1|WP_003872548.1|3030627_3031113_-|MarR-family-transcriptional-regulator
MAADHTTVDESLDAITDALLTASRLLMAISARSVGQVDETITIPQFRTLVILSNRGPVNLATLAGLLGVQPSATGRMVDRLVAAGLIDRLPHPTSRRELLAALTTRGRDVVHQVTAHRRAEIAAIVAKMPPAERHGLVRALTAFTAAGGEPDVHLDAEIDL
>NZ_CP053068.1|WP_003872549.1|3031240_3033265_-|primosomal-protein-N'
MSPGPRTPVEVEPIARVLPMLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFLLERRHDTDHQGKLGWLDRVVSPEPVLTAEIRRLVDAVAARYAGTRPDVLRLAVPARHARVEREARAAAGIPMPAPVDPSGWDGYGRGAQFLAALAESRAARAVWQALPGEPWTDRFAEAAAQTVRTGRSVLAIVPDQRDLDALSHAVTSRIDATGVVALSAGLGPAARYRRWLAALRGSARVVIGTRSAVFAPLSDLGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAQALVRSGWAHDIVAARPVVRARTPRVIALDDTGYADERDPAARTARIPSVALRAARSALQDGAPVLVQVPRRGYVPSLACARCRTIARCRHCTGPLSLAESPGEGGGGLVCRWCGRVDPTRRCARCGSDAVRAVVVGARRTAEELGRAFAGTTVITSSGDAVVPEVADGPALVVATPGAEPRARGDYGAALLLDTWALLGRQDLRAAEDALWRWMTAAALVRPRGDGGVVMVVAESSLPTVQSLIRWDPVGHAESELTARAEVGLPPSVHMAAVDGTPAAVNALLDEAGLTGGQTLHADLLGPVDLPPGARRPAGTPPGAPVTRMLVRVPRRDGLALAAALRRGVGVLSARQTHEPARVQIDPLHIG
>NZ_CP053068.1|WP_003877624.1|3033292_3034084_-|lysoplasmalogenase
MEVPYAPRLVAGAWVVAGWVALAYGIYLTVLALRSPPGVELTGHWVLQPAFKASMALLLTLAAAGHGQVRERRWLMPALLLSAVGDWVLALPWWTLSFLVGLAAFLFAPMCFIGVLLPLVPLPSGASGPGRPSTPRIAAAVLMCLASIGLLVWFWPRLGPDKLTLPVTLYIVVLTAMVCAALLAKLPTIWTAVGAVCFAASDSMIAIGRFILGNEALAVPIWWAYAAAQILITAGFFFGREAAGDAAGEATGDATGDAAEPVE
>NZ_CP053068.1|WP_003877623.1|3034082_3035045_+|alpha/beta-hydrolase
MPRLDNPADEKPGIDPILQKVLDAVPFRLSTEDGIDAARQRFRDLPRRPLHPELRVEDRTIPGPQGAIAVRIYWPPSHSESCPAPVVLYFHGGGFVIGDLDTHDGTARQHAVGAGAIVVSVDYRLAPEHPYPAAVEDAWAATLWAAENAAGLHGDPGRIAVAGDSAGGTLAAVTAQRARDRGGPPVRFQLLWYPSTMWDASLPSFAENATAPILDVKAVAEFSRWYAGDVDLSDPPADMAPGRATDLSNLPPAYIGVAGYDPLRDDGIRYGEPLAAAGVAAQVHNAETLVHGYLGYAGVVPAATAAMERGLAALRTALQG
>NZ_CP053068.1|WP_015632674.1|3035090_3036581_+|NAD(P)/FAD-dependent-oxidoreductase
MSSPAVPDHHTLIIGAGFSGIGAAIKLDKAGLPDYRVIEAGDGVGGTWHWNTYPGIAVDIPSFSYQFSFEQSRHWSRTYAPGRELKAYAEHCADKYGIRSRIRFNTKVLAAEFDDEPRLWRVHTDPGGTVTARFLISACGVLTVPNLPDIDGVDSFGGITMHTARWDHGQDLSGKRVAVIGTGASAVQVIPEIAPIVKSLTVFQRTPIWCFPKLDVPLPAPARWAMRIPGGKSVQRLLSQAYVEVTFPISAHYFTVLPLAKRMATLGKSYLRQQVRDPEVREKLTPKYAVGCKRPGFHNGYLATFNRDNVRLVTEPIDKITPDAVATTDGEHHRIDVLILATGFKVMDPDNVPTFAVTGPGGRSLSRFWDEHRLQAYEGVSVPGFPNLFTVFGPYGYVGSSYFALIEAQTHHIVRCLKRAERLGAARVEVSEEANARYFAEMMRRRHRQIFWQDSCKLANSYYFDKNGDVPLRPGTTPEVYWRSRRFNLDDYRFSA
>NZ_CP053068.1|WP_003872553.1|3036730_3037942_-|methionine-adenosyltransferase
MSEKGRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAIKDTPEMMPLPIALAHRLSRRLTEVRKSGVLPYLRPDGKTQVTIEYEDDVPVRLDTVVVSTQHAADIDLENTLTPDIREKVLNTVLDDLAHDTLDTSSTRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQVAYAIGKAAPVGLFVETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRPIYAQTAAYGHFGRTDVELPWEQLNKVDELKRAV
>NZ_CP053068.1|WP_003872554.1|3038038_3039301_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MYDRNRASTRAARIVVGVSGGIAAYKACTVVRQLSEAGHSVRVIPTESALRFVGAATFEALSGQPVHTGVFDDVPEVPHVQLGKQADLVVVAPATADLLARAVHGRADDLLTATLLTARCPVLFAPAMHTEMWLHPATVDNVATLRRRGAVVLEPAAGRLTGTDSGSGRLPEAEEITTLAQLLLERHDALPYDLAGCKMVVTAGGTREPVDPVRFIGNRSSGKQGYAVARVAAQRGAEVTLIAGHTAGLIDPAGVEVVHVSSAEQLGNAVSKHAAEADVLVMAAAVADFRPARVAAAKIKKGVEAPTIELVRNDDVLAGAVRARAHGELPNLRAIVGFAAETGDANGDVLFHARAKLRNKGCDLLVVNAVGEGRAFEVDSNDGWLLAADGTESALQHGSKTLMASRIVDAIAAFLRGDGG
>NZ_CP053068.1|WP_003872555.1|3039322_3039649_-|DNA-directed-RNA-polymerase-subunit-omega
MTNSQSDAALAAVLDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE

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Crispr_ID: NZ_CP053068_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053068_9

4650850-4650957

Orphan

Consensus_repeat	Method
CGGCCAAGAAGGCACCGGCCAAGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP053068_9

>merge|NZ_CP053068|9|4650850-4650957|CRISPRCasFinder
AGGCCAGCAAGGCCGCCGCCAAGGCGCCGGCCAAGAAGGCACCGGCCAAGAAGGCACCCGCCAAGAAGGCACCTGCGAAGACCGCGGCCAAGAAGGCACCGGCGAAGA

>NZ_CP053068|9|9|4650850-4650957|CRISPRCasFinder
AGGCCAGCAAGGCCGCCGCCAAGG	CGCCGGCCAAGAAGGCAC
CGGCCAAGAAGGCACCCGCCAAGA	AGGCACCTGCGAAGACCG
CGGCCAAGAAGGCACCGGCGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053068.1\|WP_003879446.1\|4657676_4658567_+\|formylglycine-generating-enzyme-family-protein	unknown	unknown	gnl\|CDD\|335469
NZ_CP053068.1\|WP_003873512.1\|4650994_4651837_+\|30S-ribosomal-protein-S3	unknown	unknown	gnl\|CDD\|234722
NZ_CP053068.1\|WP_003879438.1\|4642659_4643391_+\|mycofactocin-biosynthesis-peptidyl-dipeptidase-MftE	unknown	unknown	gnl\|CDD\|274883
NZ_CP053068.1\|WP_003873502.1\|4659725_4661228_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NZ_CP053068.1\|WP_003873517.1\|4648326_4648980_+\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NZ_CP053068.1\|WP_003873516.1\|4648979_4649282_+\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NZ_CP053068.1\|WP_003873510.1\|4652256_4652490_+\|50S-ribosomal-protein-L29	unknown	unknown	gnl\|CDD\|178971
NZ_CP053068.1\|WP_080505407.1\|4646408_4647002_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP053068.1\|WP_003873508.1\|4652930_4655300_+\|arylsulfatase	unknown	unknown	gnl\|CDD\|293749
NZ_CP053068.1\|WP_003879441.1\|4649304_4650147_+\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NZ_CP053068.1\|WP_003873506.1\|4655311_4656439_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|273374
NZ_CP053068.1\|WP_003873519.1\|4647353_4647659_+\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NZ_CP053068.1\|WP_010950258.1\|4656706_4657648_+\|DUF4436-domain-containing-protein	unknown	unknown	gnl\|CDD\|379624
NZ_CP053068.1\|WP_003873514.1\|4650174_4650456_+\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NZ_CP053068.1\|WP_003873511.1\|4651840_4652257_+\|50S-ribosomal-protein-L16	unknown	unknown	gnl\|CDD\|236411
NZ_CP053068.1\|WP_003873522.1\|4643387_4644806_+\|mycofactocin-biosynthesis-glycosyltransferase-MftF	unknown	unknown	gnl\|CDD\|274884
NZ_CP053068.1\|WP_003873518.1\|4647673_4648327_+\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NZ_CP053068.1\|WP_003873509.1\|4652489_4652840_+\|30S-ribosomal-protein-S17	unknown	unknown	gnl\|CDD\|235532
NZ_CP053068.1\|WP_003879439.1\|4644815_4646255_+\|mycofactocin-system-GMC-family-oxidoreductase-MftG	unknown	unknown	gnl\|CDD\|274888
NZ_CP053068.1\|WP_003879447.1\|4658750_4659638_+\|DUF4436-domain-containing-protein	unknown	unknown	gnl\|CDD\|379624

Protein	Function_ID	Function_description	E-value
NZ_CP053068.1\|WP_003879446.1\|4657676_4658567_+\|formylglycine-generating-enzyme-family-protein	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	7.36883e-84
NZ_CP053068.1\|WP_003873512.1\|4650994_4651837_+\|30S-ribosomal-protein-S3	gnl\|CDD\|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	4.86748e-144
NZ_CP053068.1\|WP_003879438.1\|4642659_4643391_+\|mycofactocin-biosynthesis-peptidyl-dipeptidase-MftE	gnl\|CDD\|274883	TIGR03964, uncharacterized_protein_putative_amidase, mycofactocin system creatininase family protein. Members of this protein family are uncharacterized Actinobacterial proteins, with homology to creatinine amidohydrolase from Pseudomonas. Members occur only in the context of the mycofactocin system. [Unknown function, Enzymes of unknown specificity].	1.5065e-126
NZ_CP053068.1\|WP_003873502.1\|4659725_4661228_+\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	3.89639e-81
NZ_CP053068.1\|WP_003873517.1\|4648326_4648980_+\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	3.12052e-106
NZ_CP053068.1\|WP_003873516.1\|4648979_4649282_+\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	1.62702e-43
NZ_CP053068.1\|WP_003873510.1\|4652256_4652490_+\|50S-ribosomal-protein-L29	gnl\|CDD\|178971	PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed.	5.96693e-25
NZ_CP053068.1\|WP_080505407.1\|4646408_4647002_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	8.86637e-09
NZ_CP053068.1\|WP_003873508.1\|4652930_4655300_+\|arylsulfatase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP053068.1\|WP_003879441.1\|4649304_4650147_+\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NZ_CP053068.1\|WP_003873506.1\|4655311_4656439_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	2.1718e-95
NZ_CP053068.1\|WP_003873519.1\|4647353_4647659_+\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	3.08028e-66
NZ_CP053068.1\|WP_010950258.1\|4656706_4657648_+\|DUF4436-domain-containing-protein	gnl\|CDD\|379624	pfam14494, DUF4436, Domain of unknown function (DUF4436). This is a family of membrane and transmembrane proteins from mycobacterial and related species. The function is not known.	7.36588e-112
NZ_CP053068.1\|WP_003873514.1\|4650174_4650456_+\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	6.25408e-64
NZ_CP053068.1\|WP_003873511.1\|4651840_4652257_+\|50S-ribosomal-protein-L16	gnl\|CDD\|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	9.85934e-90
NZ_CP053068.1\|WP_003873522.1\|4643387_4644806_+\|mycofactocin-biosynthesis-glycosyltransferase-MftF	gnl\|CDD\|274884	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase. Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin.	9.18277e-167
NZ_CP053068.1\|WP_003873518.1\|4647673_4648327_+\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	2.44729e-126
NZ_CP053068.1\|WP_003873509.1\|4652489_4652840_+\|30S-ribosomal-protein-S17	gnl\|CDD\|235532	PRK05610, rpsQ, 30S ribosomal protein S17; Reviewed.	1.05586e-42
NZ_CP053068.1\|WP_003879439.1\|4644815_4646255_+\|mycofactocin-system-GMC-family-oxidoreductase-MftG	gnl\|CDD\|274888	TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.	0
NZ_CP053068.1\|WP_003879447.1\|4658750_4659638_+\|DUF4436-domain-containing-protein	gnl\|CDD\|379624	pfam14494, DUF4436, Domain of unknown function (DUF4436). This is a family of membrane and transmembrane proteins from mycobacterial and related species. The function is not known.	6.53326e-116

>NZ_CP053068.1|WP_003873514.1|4650174_4650456_+|30S-ribosomal-protein-S19
MPRSLKKGPFVDGHLLKKVDAQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTEAMVGHKLGEFAPTRTFKGHIKDDRKAKRR
>NZ_CP053068.1|WP_003879441.1|4649304_4650147_+|50S-ribosomal-protein-L2
MAIRKYKPTSPGRRGASVSDFSEVTRSTPEKSLVRPLHGHGGRNAHGRITTRHKGGGHKRAYRVIDFRRNDKDGVNAKVAHIEYDPNRTANIALLHFLDGEKRYIIAPQGLSQGDVVESGPNADIKPGNNLPLRNIPAGTVIHAVELRPGGGAKLALSAGSSIQLLGKEGSYASLRMPSGEIRRVDVRCRATVGEVGNAEQANINWGKAGRMRWKGKRPSVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRHPNKASNKLIVRRRRTGKKHGR
>NZ_CP053068.1|WP_003873516.1|4648979_4649282_+|50S-ribosomal-protein-L23
MATVTDPRDIILAPVISEKSYSLLDDNVYTFVVHPDSNKTQIKIAIEKIFSVKVASVNTANRQGKRKRTRTGFGKRKSTKRAIVTLAPGSKPIDLFGAPA
>NZ_CP053068.1|WP_003873517.1|4648326_4648980_+|50S-ribosomal-protein-L4
MALKLDVKAPGGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVSGQTPSTKSAKAFLGALTERKQVLVVIGRSDEAGAKSVRNLPGVHILAPDQLNTYDVLRADDVVFSVEALRAYIAANTGTPEEVSA
>NZ_CP053068.1|WP_003873518.1|4647673_4648327_+|50S-ribosomal-protein-L3
MARKGILGTKLGMTQVFDENNRVVPVTVVKAGPNVVTRIRTPEQDGYSAVQLAYGEISPRKVNKPVTGQYAAAGINPRRFLAELRLDNPDAAAEYQVGQELTAEIFTDGSYVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKGTRMAGRMGNDRVTVQNLLVHKVDTENGVLLIKGAVPGRTGGLVMVRSAVKRGEK
>NZ_CP053068.1|WP_003873519.1|4647353_4647659_+|30S-ribosomal-protein-S10
MAGQKIRIRLKAYDHEAIDASARKIVETVVRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDALMRIDLPASVDVNIQ
>NZ_CP053068.1|WP_080505407.1|4646408_4647002_+|TetR/AcrR-family-transcriptional-regulator
MLEAAVTLLRAGGPSAVTVDAVTRTANVARATLYRHFPSGNDLLAAAFNSLIPASPTPPAEGSLRDRLVAVVLAQAEAVAQAPTMMTAMTWLALGRDLEAWPQPRADDSVAITTLRERIAQQYSEPFDVIFDSPEAAELGEVDRSRAIALLIGPLVLGRLSTLPDFDYRECALAAVDGFLHVQRARARAARVESAGA
>NZ_CP053068.1|WP_003879439.1|4644815_4646255_+|mycofactocin-system-GMC-family-oxidoreductase-MftG
MKNAVSHSDVLIVGVGSAGSVVAERLSADPGCTVTVVEAGPALDDPALLARTANGLQLPIGVGSPLVRRYQTQLTERPARRHPLVRGATIGGSGAINGGYFCRGLPRDFDRLGLPGWAWSDVLDSFRAIETDLDFDGPAHGRSGPILVRRTREMTGTTERFIDAARRAGFGWIDDLNDAAAQPVSGIGAVPLNIVDGVRKGSGAGYLIPALSRPNLRVQAHSRVARLRLAGTVARGADVVGPHGRATLTADRIVLCAGAIETAHLLMLSGIGEPGMLRAAGVPVRVALPVGTSFSDHAEWVLPTDWPVAPGRPVLEVVLSTADHLEIRPYTGGFVAMTGDGTAGHADWPHLGVALMQPRARGCLTLVSADPAVPPRIEHRYDSEPGDVAALARGAELARELAGGTTDAAAVIWSTSQHLCGTAPMGVDGDPRAVVDPRCRVRGIDNLWVIDGSVLPAITSRGPHATIVMIGHRAAEFVR
>NZ_CP053068.1|WP_003873522.1|4643387_4644806_+|mycofactocin-biosynthesis-glycosyltransferase-MftF
MTAPAPRLPDGFAVQVDRRVRVLGDGSALLGGSPTRLLKLAPAAQDLLCDGRLKVRDDVSAQLARTLLDATVAHPRPAGGPSHHDVTVVIPVRDNLSGVRRLVSSLRGLRVVVVDDGSFPPIEPEDFVGAHCDIEVLRHHRSKGPAAARNTGLAACRTDFVAFLDSDVAPRRGWLEALLGHFCDPTVGLVAPRIVGLSHSENVVARYEAVHSSLDLGEREAPVLPHSTVSYVPSAAIICRCSAIREIGGFDETLQSGEDVDLCWRLIEAGVRLRYEPIALVGHDHRTELRDWLARKAFYGGSAAPLSVRHPDKTAPVVISGWALMTWILMAFGSTLSRLASLLLAVLTGRRIARAMRSAETSMTDVVTVAGRGLWSAALQLASALCRHYWPLALLAATMSRHFRRVVLVAAVMDGVVDWLRRRDAVGDDVEPIGLPTYLVLKRVDDLAYGLGLWWGVLRERNARALKPQIRS
>NZ_CP053068.1|WP_003879438.1|4642659_4643391_+|mycofactocin-biosynthesis-peptidyl-dipeptidase-MftE
MNSSYHHRVSVLGELGTVTSSQLSGTAVSLLVPLGSTEQHGPHLPLDTDTRIASAVAGRAVPRLGDDWLVAPAIAYGASGEHQSFAGTVSIGTEALTLLLIEYGRSAAGWAQRVVFVNGHGGNVAALGRAVGTLRAEGRDAGWCPCVAAGGDAHAGHTETSVLLHISPAEVRTGAWQAGNRAPLPELLGSMRRGGVAAVSPVGVLGDPTTATAAEGERILSEMVNECVRRVARWRPGPDGMLA
>NZ_CP053068.1|WP_003873512.1|4650994_4651837_+|30S-ribosomal-protein-S3
MGQKINPYGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSTGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVRNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIGYGLYEAKTTFGRIGVKVWIYKGDVVGGKRELAAAAPAGAERPRRERPSGTRPRRSGASGTTATGTEAGRAAASADESTAAGQPAEAAPAAEPQSTES
>NZ_CP053068.1|WP_003873511.1|4651840_4652257_+|50S-ribosomal-protein-L16
MLIPRKVKHRKQHHPRQRGIASGGTAVNFGDYGIQALEHAYVTNRQIESARIAINRHIKRGGKVWINVFPDRPLTKKPAETRMGSGKGSPEWWVVNVKPGRVLFELSYPNEQTARAALTRAIHKLPIKARIVTREDQF
>NZ_CP053068.1|WP_003873510.1|4652256_4652490_+|50S-ribosomal-protein-L29
MAVGISPGELRELTDDELTERLRESKEELFNLRFQMATGQLTNNRRLRTVRQEIARVYTVLRERELGLASGPDGKES
>NZ_CP053068.1|WP_003873509.1|4652489_4652840_+|30S-ribosomal-protein-S17
MAEAKKAAPKKAATAASKDADAKGPKHTPPNPKVRGRRKTRIGYVVSDKMQKTIVVELEDRVKHPLYGKIIRTTKKVKAHDENSIAGIGDRVSLMETRPTSATKRWRLVEILEKAK
>NZ_CP053068.1|WP_003873508.1|4652930_4655300_+|arylsulfatase
MVAGSGQSAEFSGRVELDIRDSEPDWGPYAAPTAPPNAPNILYLVWDDTGIATWDCFGGLVEMPAMSRIAERGVRLSQFHTTALCSPTRAALLTGRNATTVGMATIEEFTEGFPNANGRIPFDTALLSEALAEHGYNTYCVGKWHLTPLEESNMASTKRHWPTSRGFERFYGFLGGETDQWYPDLVYDNHPVSPPATPEDGYHLSKDLADKTIEFIRDAKVIAPEKPWFSYVCPGAGHAPHHVFKEWADRYAGRFDMGYERYREVVLERQKAMGIVPSDTELSPVNPYLDVTGPRGEPWPLQDTVRPWDSLNDEEKKLFARMAEVFAGFLSYTDAQIGRILDYLEESGQLDDTIIVVISDNGASGEGGPNGSVNEGKFFNGYIDTVEESMKLFDQLGGPQTYNHYPIGWAMAFNTPYKLYKRYASHEGGIADTAIISWPNGIAAHGEIRDNYVNVCDITPTVYDLLGMSPPETVKGIAQKPLDGVSFKAALDDPNADTGKTTQFYTMLGTRGIWHEGWFANTVHAATPAGWSHFDADRWELFHIEADRSQCHDLAAENPDKLEELKALWFAEAARYNGLPLSDLNILETMTRSRPYLVGERDSYVYYPDCADVGIGAAAEIRGRSFSVLAEATVDTTGAEGVLFKQGGAHGGHVLFIQDGRLHYVYNFLGERQQEVSSSVPVPLGRHLFGASYARTGTVPDSHTPLGDLTLFIDDEVVGTLAGVSTHPGTFGLAGAGITVGRNGGSGVSSRFKAPFVFTGGTIARVTLDLSGRPYRDVETEIALAFSRD
>NZ_CP053068.1|WP_003873506.1|4655311_4656439_-|phosphate-ABC-transporter-substrate-binding-protein-PstS
MMRTRSAVIAGVLMATTLVVSACGETPASLPYTAGAKVDCGGKQTLSASGSTAQANAMTRFIAAYRTACPGQTLDYTANGSGNGIGDFLAGRTDFAGSDTPLSGDQYAAAKRRCGGADAWNLPVVFGPLAITYNLAAVDSLVLDAPTLAKIFNGTITRWDDPALALLNASMPAEDIRVVYRSDGSGTTDNFQAYLQSAAGGVWNKGAGKTFNGGVGTGAVGNTGTAAAVKSTEGAISYNELSFALQQGLFAAEIKTPASRRSLRPVRIGTDIFGKTIKGARIVGTGNDLVLDLSSFYNPAQPDVYPIVLATYEIVCSKYPGFDVAKAVKAFLQAAIGPGQVELARTGYIPLSADFQAKVSGAVDAISSPQAPNPD
>NZ_CP053068.1|WP_010950258.1|4656706_4657648_+|DUF4436-domain-containing-protein
MTHQAPPAPPPSVPSEQPPAAPPDAPPARRRRRPVIAAAVVLGFVAVYVLSLFGVHLLAKTAGPLKPPDLNATSDTVVLVRLEKLDTIANRLTVKVLVIPEESMFDKRLDVLTTDTAVRMDPPNDLGDLQYPAGKSPAQVATTIEAHGNPNNWPFYSYRTDTMSAEVLVGQGDTRHYIPARVEVTGGLDGWDVSVQRVGEASQESDRADNVIITLHRSKSTLIFDAGICLVLFALPAMALTIALLMLTGKRGFLPPFVTWFAALLFAVIPIRNFLPGSPPAGAWVDQALVLWVLIALVASMVLFLITWYRRTD
>NZ_CP053068.1|WP_003879446.1|4657676_4658567_+|formylglycine-generating-enzyme-family-protein
MRSELADLPGGSFRMGSTSFYPEEAPIHTVTVEPFAIERHPVTNAQFAEFVAATGYVTVAEQPIDPALYPGADPSQLQPGAMVFRPTPGPVDLRDWRQWWHWVPGASWRHPFGPDSDVADRADHPVVQVAYPDAAAYARWAGRRLPTEAEWEYAARAGATTTYPWGDEPTSDGRLMANTWQGRFPYRNDGALGWVGTSPVGVFAPNAFGLLDMIGNVWEWTTTEFSTHHRIGAATKPCCAPSGPADPSVNQTLKGGSHLCAPEYCHRYRPAARSPQSQDSATTHIGFRCVAELGSN
>NZ_CP053068.1|WP_003879447.1|4658750_4659638_+|DUF4436-domain-containing-protein
MTKKRDRPRIAIGVCILAGVVIVYVLSLFGVHFLQRSEGPLPPLDLSQGGGDATIVQLRLEELKPVANRLSVNVLVYPGVAQYDNRFDVLANDVAVRLYPTSDLGDLHYPKGKAPAQLSTTVEAHGDPGNWPFDSYRTEPISADAFVGSGDNLKKVPARVEVTGALDGWQITVDRVRDPAALPTQRGSDNGDVVITLKRAKGPLIFDLGICLVLISLPTLALLVAIPMAMGRRKFLPPFATWYAANLFAIVPLRNILPGAPPPGSWIDQAIVQWVLIALVAAMTLYIIAWVRQGD
>NZ_CP053068.1|WP_003873502.1|4659725_4661228_+|HNH-endonuclease
MFEDAVAWFDELMERCYPSATPESAALVQRIGVFARVENRAAAEQLAAIGELFAYRLSRCSECEDWAVDTEAAVSAEVAAQLRIGQGLAAAKVRYARAMRERLPRVGEVFRAGEIDFRLFATIVYRTDLITDRRVLAAVDAELAATAARWPSMTRARLAARVDAVVAKADADAVRRAEKQAATRHVWIAEMGEGLSHLEGTVSSPDAHALDKRLDALAATVCEHDPRTGEQRRADALGALAAGADRLGCRCGRADCAAGTGPAAGPVVIHVIAERASVEGTGGGPAVEVGAEGLLPAQLVAELAASARLMPLVHPADSSPENRYTPSAALADFVRCRDLTCRWPGCDRPATECDLDHTIPYAEGGPTHASNLKCYCRTHHLVKTFWGWREQQLPDATLILTSPAGQTYVTTPGSALLFPSLCVPTGEPARPVAAGSQPCGERTAMMPTRRRTRGQNRAARVAAERRANRAARLARATRPAPAASQSWPAGHGPDADPPPF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP053068.1	351062-351090	0	1.0
NZ_CP053068_9	9.1\|4650874\|18\|NZ_CP053068\|CRISPRCasFinder	4650874-4650891	18	NZ_CP053068.1	4027433-4027450	0	1.0
NZ_CP053068_9	9.1\|4650874\|18\|NZ_CP053068\|CRISPRCasFinder	4650874-4650891	18	NZ_CP053068.1	2272599-2272616	1	0.944

1. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to position: 351062-351090, mismatch: 0, identity: 1.0

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cggctgcgccgcgcttgcgatcgccgcgc	Protospacer
*****************************

2. spacer 9.1|4650874|18|NZ_CP053068|CRISPRCasFinder matches to position: 4027433-4027450, mismatch: 0, identity: 1.0

cgccggccaagaaggcac	CRISPR spacer
cgccggccaagaaggcac	Protospacer
******************

3. spacer 9.1|4650874|18|NZ_CP053068|CRISPRCasFinder matches to position: 2272599-2272616, mismatch: 1, identity: 0.944

cgccggccaagaaggcac	CRISPR spacer
cgctggccaagaaggcac	Protospacer
***.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	492097-492125	3	0.897
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	509638-509666	3	0.897
NZ_CP053068_6	6.1\|2272699\|25\|NZ_CP053068\|CRISPRCasFinder	2272699-2272723	25	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	141033-141057	3	0.88
NZ_CP053068_1	1.1\|406228\|25\|NZ_CP053068\|CRISPRCasFinder	406228-406252	25	CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	131283-131307	4	0.84
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	251834-251862	4	0.862
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1780240-1780268	4	0.862
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1847066-1847094	4	0.862
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	1027719-1027747	4	0.862
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	23039-23067	4	0.862
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NC_014811	Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence	179192-179220	4	0.862
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NC_008703	Mycobacterium sp. KMS plasmid pMKMS01, complete sequence	44679-44707	4	0.862
NZ_CP053068_6	6.1\|2272699\|25\|NZ_CP053068\|CRISPRCasFinder	2272699-2272723	25	NZ_CP023738	Methylosinus trichosporium OB3b plasmid pOB3b1, complete sequence	106673-106697	4	0.84
NZ_CP053068_6	6.1\|2272699\|25\|NZ_CP053068\|CRISPRCasFinder	2272699-2272723	25	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	938214-938238	4	0.84
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP022747	Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence	83563-83591	5	0.828
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP022749	Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence	166742-166770	5	0.828
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	523304-523332	5	0.828
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	MH744420	Streptomyces phage Kromp, complete genome	13856-13884	5	0.828
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP016462	Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence	145172-145200	6	0.793
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP012708	Psychrobacter urativorans strain R310.10B plasmid 2, complete sequence	936-964	6	0.793
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_LR134468	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence	99913-99941	6	0.793
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP024308	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence	331027-331055	6	0.793
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NZ_CP015530	Rhodococcus sp. WB1 plasmid pWB1, complete sequence	79911-79940	6	0.8
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	92492-92520	7	0.759
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	2090622-2090650	7	0.759
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	16376-16404	7	0.759
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	597057-597085	7	0.759
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	542873-542901	7	0.759
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	708548-708576	7	0.759
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	418198-418226	7	0.759
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	566904-566932	7	0.759
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	34546-34574	7	0.759
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP014169	Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence	11428-11456	7	0.759
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	125440-125469	7	0.767
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	576541-576570	7	0.767
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NC_013193	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence	107046-107075	7	0.767
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	517672-517701	7	0.767
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	MT657333	Microbacterium phage Casend, complete genome	60372-60401	7	0.767
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	589152-589180	8	0.724
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	719122-719150	8	0.724
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP020951	Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence	339852-339880	8	0.724
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	539184-539212	8	0.724
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	597600-597628	8	0.724
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP006257	Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence	7119-7147	8	0.724
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	MH632120	Mycobacterium phage Thonko, complete genome	52304-52332	8	0.724
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4993432-4993461	8	0.733
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	34530-34559	8	0.733
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	132707-132736	9	0.7
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	326083-326112	9	0.7
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1583679-1583708	9	0.7
NZ_CP053068_5	5.1\|1289804\|30\|NZ_CP053068\|CRISPRCasFinder	1289804-1289833	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	369234-369263	9	0.7
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	187322-187350	10	0.655
NZ_CP053068_3	3.1\|1085990\|29\|NZ_CP053068\|CRISPRCasFinder	1085990-1086018	29	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	1138221-1138249	10	0.655

1. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.897

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cggctgcgccgcgcttgcgatcgcctcta	Protospacer
************************* *

2. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.897

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cggctgcgccgcgcttgcgatcgcctcta	Protospacer
************************* *

3. spacer 6.1|2272699|25|NZ_CP053068|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.88

ggccgtgctggccaattcgcggccg	CRISPR spacer
cgccgagctggccaattcgcggcag	Protospacer
 **** ***************** *

4. spacer 1.1|406228|25|NZ_CP053068|CRISPRCasFinder matches to CP036360 (Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence) position: , mismatch: 4, identity: 0.84

gggtgggatggcccgcctcctcctc	CRISPR spacer
ctatgggatggcccgcctcctcttc	Protospacer
  .*******************.**

5. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 4, identity: 0.862

--cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gtcgg--gcgcggcgctggcgatcgccgcgc	Protospacer
  ***  **** ***** *************

6. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.862

cggctg-cgccgcgcttgcgatcgccgcgc	CRISPR spacer
-ggccgttgccgcgctggcgatcgccgcgc	Protospacer
 ***.* .******** *************

7. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 4, identity: 0.862

cggctg-cgccgcgcttgcgatcgccgcgc	CRISPR spacer
-ggccgttgccgcgctggcgatcgccgcgc	Protospacer
 ***.* .******** *************

8. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 4, identity: 0.862

cggctgcgccgcgcttgcgatc-gccgcgc	CRISPR spacer
gggctgcgccccgcttgcgatcggccgag-	Protospacer
 ********* *********** **** *

9. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 4, identity: 0.862

cggctg--cgccgcgcttgcgatcgccgcgc	CRISPR spacer
--gctggccgccgcgcgtgcgatggccgcgc	Protospacer
  ****  ******** ****** *******

10. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NC_014811 (Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence) position: , mismatch: 4, identity: 0.862

cggctg--cgccgcgcttgcgatcgccgcgc	CRISPR spacer
--gctggccgccgcgcgtgcgatggccgcgc	Protospacer
  ****  ******** ****** *******

11. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 4, identity: 0.862

cggctg--cgccgcgcttgcgatcgccgcgc	CRISPR spacer
--gctggccgccgcgcgtgcgatggccgcgc	Protospacer
  ****  ******** ****** *******

12. spacer 6.1|2272699|25|NZ_CP053068|CRISPRCasFinder matches to NZ_CP023738 (Methylosinus trichosporium OB3b plasmid pOB3b1, complete sequence) position: , mismatch: 4, identity: 0.84

ggccgtgctggccaattcgcggccg	CRISPR spacer
ggccgtgctggacaattcgcggtgc	Protospacer
*********** **********.

13. spacer 6.1|2272699|25|NZ_CP053068|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 4, identity: 0.84

ggccgtgctggccaattcgcggccg	CRISPR spacer
ggccgcgctggccatttcgcggcga	Protospacer
*****.******** ******** .

14. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP022747 (Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.828

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gggcggcgccgcgattgcgatcgccggga	Protospacer
 *** ******** ************ *

15. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP022749 (Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.828

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gggcggcgccgcgattgcgatcgccggga	Protospacer
 *** ******** ************ *

16. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 5, identity: 0.828

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cgcctgcgccgggcttgcgatcgcattgc	Protospacer
** ******** ************  .**

17. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to MH744420 (Streptomyces phage Kromp, complete genome) position: , mismatch: 5, identity: 0.828

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cgccgacgccgcggtggcgatcgccgcgc	Protospacer
** * .******* * *************

18. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 6, identity: 0.793

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ctgatgcgccacgcttgcgatcgccgaaa	Protospacer
* * ******.*************** .

19. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP012708 (Psychrobacter urativorans strain R310.10B plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.793

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
aggctgtgccgcgcttgcgctcgccatcc	Protospacer
 *****.************ *****.. *

20. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 6, identity: 0.793

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cctcgacgccgcgctggagatcgccgcgc	Protospacer
*  * .********* * ***********

21. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 6, identity: 0.793

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cttcatcgccgcccttgcgctcgccgcgc	Protospacer
*  *  ****** ****** *********

22. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NZ_CP015530 (Rhodococcus sp. WB1 plasmid pWB1, complete sequence) position: , mismatch: 6, identity: 0.8

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
gctcccgcggcggcggttcggtgcgcaggg	Protospacer
 * ********* **********.**.* *

23. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctcgacgccgcgcgggcgatcgccgcgc	Protospacer
.  * .********  *************

24. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctcgacgccgcgcgggcgatcgccgcgc	Protospacer
.  * .********  *************

25. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gttcgccgccgcgcctgcgctcgccgcgc	Protospacer
   *  ********.**** *********

26. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctcgacgccgcgcgggcgatcgccgcgc	Protospacer
.  * .********  *************

27. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ctatggcgccgcgcaggcgatcgccgcga	Protospacer
* .. *********  ************

28. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ctatggcgccgcgcaggcgatcgccgcga	Protospacer
* .. *********  ************

29. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ctatggcgccgcgcaggcgatcgccgcga	Protospacer
* .. *********  ************

30. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctcgacgccgcgcgggcgatcgccgcgc	Protospacer
.  * .********  *************

31. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctttccgccgcgcttgccatcaccgcgc	Protospacer
.  .* ************ ***.******

32. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP014169 (Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gaacagcgcgacgcttgcgatcgccgcga	Protospacer
 ..* **** .*****************

33. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggtcgcgtcgccggttcggtgtgcgggc	Protospacer
.*. .**** ******************

34. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
cgggcagcggcgccggctcggtgtgcggca	Protospacer
. . * **********.************.

35. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggcagcggcgccggttcgctgtgccgct	Protospacer
.*. * ************** ***** **

36. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccgtcaccgccgccggttcggtgagcggcg	Protospacer
.*..*  ** ************* ******

37. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to MT657333 (Microbacterium phage Casend, complete genome) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg----	CRISPR spacer
tctcccgcggcaccggttcggt----gacgccct	Protospacer
** ********.**********    *.**

38. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
atatggcgccgcgcaggcgatcgccgcga	Protospacer
  .. *********  ************

39. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gacgctcgccgcgcgggcgatcgccgcgc	Protospacer
 .  . ********  *************

40. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ttatggcgccgcgcaggcgatcgccgcga	Protospacer
. .. *********  ************

41. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
atatggcgccgcgcaggcgatcgccgcga	Protospacer
  .. *********  ************

42. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
atatggcgccgcgcaggcgatcgccgcga	Protospacer
  .. *********  ************

43. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP006257 (Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tggctgggccgtgcttgcgatcgctcact	Protospacer
.***** ****.************.   .

44. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to MH632120 (Mycobacterium phage Thonko, complete genome) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gtcgcacgccgcgctcgcgatcgccgggc	Protospacer
    ..*********.********** **

45. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggccgcggcgcccgttcggtgagcgagc	Protospacer
.*. ********** ******** ***.

46. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccttccgcgtcgccggttcggtgtgttcgg	Protospacer
.* .***** ***************.   *

47. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
cgggtcaatgcgccggttcggtgtccggcg	Protospacer
. . .*.  *************** *****

48. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccacccgcggcggcagttcggtgtaataat	Protospacer
.*********** *.*********.  .

49. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
agcagagcggccccggttcggggtgcggcc	Protospacer
      ***** ********* *******

50. spacer 5.1|1289804|30|NZ_CP053068|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
agcagagcggccccggttcggggtgcggcc	Protospacer
      ***** ********* *******

51. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 10, identity: 0.655

cggctgcgccgcgcttgcgatcgccgcgc-----	CRISPR spacer
-----gcgccgcgatcgcaagcgctgcgccggcc	Protospacer
     ******** *.**.* ***.****

52. spacer 3.1|1085990|29|NZ_CP053068|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 10, identity: 0.655

cggctgcgccgcgcttgcgatcgccgcgc-----	CRISPR spacer
-----gcgccgcgatcgcaagcgctgcgccggcc	Protospacer
     ******** *.**.* ***.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

756621 : 763193

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003874929.1\|756621_757554_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	5.9e-05	35.9
WP_003874930.1\|757488_758532_-	DNA polymerase IV	F1C5A5	Cronobacter_phage	1.1e-18	27.9
WP_003874931.1\|758531_759146_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003874932.1\|759239_759794_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	5.4e-06	33.6
WP_003874933.1\|760323_760563_+	redoxin NrdH	V5UN81	Mycobacterium_phage	2.0e-21	64.5
WP_003874934.1\|760605_761058_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.7e-13	37.7
WP_019305874.1\|761075_763193_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	7.2e-208	51.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053068

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection