CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054473	Pseudomonas aeruginosa strain PAAK095 chromosome, complete genome	3 crisprs	csa3,RT,DEDDh,cas3,DinG,PD-DExK,WYL	0	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054473_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054473_1

214986-215099

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054473_1

>merge|NZ_CP054473|1|214986-215099|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP054473|1|1|214986-215099|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054473.1\|WP_003112945.1\|224269_224764_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP054473.1\|WP_003107781.1\|203601_204663_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP054473.1\|WP_003112941.1\|218640_219693_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP054473.1\|WP_003118764.1\|222729_223428_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_CP054473.1\|WP_003084290.1\|207366_208725_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP054473.1\|WP_016852355.1\|220889_221909_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP054473.1\|WP_016852350.1\|202875_203541_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP054473.1\|WP_003084299.1\|210276_211380_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP054473.1\|WP_003084320.1\|221928_222681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054473.1\|WP_016852356.1\|223449_224004_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054473.1\|WP_174543332.1\|212950_214105_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP054473.1\|WP_003084297.1\|208790_210161_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP054473.1\|WP_003111119.1\|201834_202713_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP054473.1\|WP_003112942.1\|219671_220175_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP054473.1\|WP_003112937.1\|204918_206295_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP054473.1\|WP_016852353.1\|206573_207326_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP054473.1\|WP_003118762.1\|220279_220891_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP054473.1\|WP_003084339.1\|224766_225459_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP054473.1\|WP_016852354.1\|216142_218530_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP054473.1\|WP_003084301.1\|211798_212896_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377

Protein	Function_ID	Function_description	E-value
NZ_CP054473.1\|WP_003112945.1\|224269_224764_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP054473.1\|WP_003107781.1\|203601_204663_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_CP054473.1\|WP_003112941.1\|218640_219693_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP054473.1\|WP_003118764.1\|222729_223428_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NZ_CP054473.1\|WP_003084290.1\|207366_208725_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP054473.1\|WP_016852355.1\|220889_221909_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.73073e-56
NZ_CP054473.1\|WP_016852350.1\|202875_203541_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.56691e-09
NZ_CP054473.1\|WP_003084299.1\|210276_211380_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP054473.1\|WP_174543332.1\|212950_214105_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP054473.1\|WP_003084297.1\|208790_210161_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP054473.1\|WP_003111119.1\|201834_202713_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP054473.1\|WP_003112937.1\|204918_206295_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP054473.1\|WP_016852353.1\|206573_207326_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	4.197e-109
NZ_CP054473.1\|WP_003118762.1\|220279_220891_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_CP054473.1\|WP_003084339.1\|224766_225459_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP054473.1\|WP_016852354.1\|216142_218530_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP054473.1\|WP_003084301.1\|211798_212896_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0

>NZ_CP054473.1|WP_174543332.1|212950_214105_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKPLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP054473.1|WP_003084301.1|211798_212896_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP054473.1|WP_003084299.1|210276_211380_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP054473.1|WP_003084297.1|208790_210161_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP054473.1|WP_003084290.1|207366_208725_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP054473.1|WP_016852353.1|206573_207326_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGDSIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP054473.1|WP_003112937.1|204918_206295_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP054473.1|WP_003107781.1|203601_204663_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP054473.1|WP_016852350.1|202875_203541_-|TetR/AcrR-family-transcriptional-regulator
MQPTSSTRKPRASSQARIAAILDAARGLLADEGISGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NZ_CP054473.1|WP_003111119.1|201834_202713_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP054473.1|WP_016852354.1|216142_218530_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP054473.1|WP_003112941.1|218640_219693_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP054473.1|WP_003112942.1|219671_220175_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP054473.1|WP_003118762.1|220279_220891_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP054473.1|WP_016852355.1|220889_221909_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLCSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP054473.1|WP_003084320.1|221928_222681_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP054473.1|WP_003118764.1|222729_223428_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP054473.1|WP_016852356.1|223449_224004_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGHAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP054473.1|WP_003112945.1|224269_224764_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP054473.1|WP_003084339.1|224766_225459_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP054473_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054473_2

1858643-1858744

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP054473_2

>merge|NZ_CP054473|2|1858643-1858744|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_CP054473|2|2|1858643-1858744|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054473.1\|WP_003091540.1\|1860037_1860304_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP054473.1\|WP_003091547.1\|1853878_1854190_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP054473.1\|WP_003091551.1\|1852288_1852510_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP054473.1\|WP_003114810.1\|1857727_1858354_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
NZ_CP054473.1\|WP_003116398.1\|1855931_1857731_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP054473.1\|WP_016852630.1\|1849977_1850781_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP054473.1\|WP_003091534.1\|1863859_1864789_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP054473.1\|WP_003119699.1\|1863025_1863853_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP054473.1\|WP_016852631.1\|1850784_1852146_-\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_CP054473.1\|WP_003109182.1\|1858462_1858621_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP054473.1\|WP_003116397.1\|1848979_1849837_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP054473.1\|WP_003091533.1\|1864988_1865306_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054473.1\|WP_070330033.1\|1858880_1860005_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_CP054473.1\|WP_003116401.1\|1866198_1867098_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP054473.1\|WP_003109184.1\|1860585_1862418_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP054473.1\|WP_023083390.1\|1867107_1867443_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP054473.1\|WP_003114814.1\|1865452_1866094_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP054473.1\|WP_003091546.1\|1854186_1855842_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP054473.1\|WP_003114812.1\|1862480_1863044_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_CP054473.1\|WP_003114808.1\|1852803_1853661_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357

Protein	Function_ID	Function_description	E-value
NZ_CP054473.1\|WP_003091540.1\|1860037_1860304_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_CP054473.1\|WP_003091547.1\|1853878_1854190_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_CP054473.1\|WP_003091551.1\|1852288_1852510_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33
NZ_CP054473.1\|WP_003114810.1\|1857727_1858354_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
NZ_CP054473.1\|WP_003116398.1\|1855931_1857731_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_CP054473.1\|WP_016852630.1\|1849977_1850781_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	1.05866e-100
NZ_CP054473.1\|WP_003091534.1\|1863859_1864789_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_CP054473.1\|WP_003119699.1\|1863025_1863853_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	2.13956e-42
NZ_CP054473.1\|WP_003109182.1\|1858462_1858621_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_CP054473.1\|WP_003116397.1\|1848979_1849837_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96
NZ_CP054473.1\|WP_070330033.1\|1858880_1860005_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP054473.1\|WP_003116401.1\|1866198_1867098_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_CP054473.1\|WP_003109184.1\|1860585_1862418_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
NZ_CP054473.1\|WP_023083390.1\|1867107_1867443_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	5.26797e-64
NZ_CP054473.1\|WP_003114814.1\|1865452_1866094_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_CP054473.1\|WP_003091546.1\|1854186_1855842_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP054473.1\|WP_003114812.1\|1862480_1863044_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_CP054473.1\|WP_003114808.1\|1852803_1853661_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.52249e-117

>NZ_CP054473.1|WP_003109182.1|1858462_1858621_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_CP054473.1|WP_003114810.1|1857727_1858354_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_CP054473.1|WP_003116398.1|1855931_1857731_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_CP054473.1|WP_003091546.1|1854186_1855842_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_CP054473.1|WP_003091547.1|1853878_1854190_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_CP054473.1|WP_003114808.1|1852803_1853661_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_CP054473.1|WP_003091551.1|1852288_1852510_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>NZ_CP054473.1|WP_016852631.1|1850784_1852146_-|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTKVASAALTQQAGN
>NZ_CP054473.1|WP_016852630.1|1849977_1850781_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGLYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_CP054473.1|WP_003116397.1|1848979_1849837_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_CP054473.1|WP_070330033.1|1858880_1860005_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVSFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_CP054473.1|WP_003091540.1|1860037_1860304_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_CP054473.1|WP_003109184.1|1860585_1862418_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_CP054473.1|WP_003114812.1|1862480_1863044_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_CP054473.1|WP_003119699.1|1863025_1863853_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGHYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_CP054473.1|WP_003091534.1|1863859_1864789_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_CP054473.1|WP_003091533.1|1864988_1865306_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_CP054473.1|WP_003114814.1|1865452_1866094_+|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_CP054473.1|WP_003116401.1|1866198_1867098_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_CP054473.1|WP_023083390.1|1867107_1867443_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLITGVYDSEDKVVLAGFDKPLPNGARLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP054473_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054473_3

6702624-6702780

Orphan

Consensus_repeat	Method
GTGAGGCCGAGCCGACATCCTGTCGAGGCTTCGTCGTTCAGCCCACCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054473_3

>merge|NZ_CP054473|3|6702624-6702780|CRISPRCasFinder
GTGAGGCCGAGCCGACATCCTGTCGAGGCTTCGTCGTTCAGCCCACCCCGGCCCGGCCATCCTGGCCGGTCGTTCGCCCTTCAAAACGCATGCGGTTCGGCGTCTTGGGTGAGGCCGAGCCGACATCCTGTCGAGGCCTCGTCGTTCAGCCCACCCC

>NZ_CP054473|3|3|6702624-6702780|CRISPRCasFinder
GTGAGGCCGAGCCGACATCCTGTCGAGGCTTCGTCGTTCAGCCCACCCC	GGCCCGGCCATCCTGGCCGGTCGTTCGCCCTTCAAAACGCATGCGGTTCGGCGTCTTGG
GTGAGGCCGAGCCGACATCCTGTCGAGGCCTCGTCGTTCAGCCCACCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054473.1\|WP_003102831.1\|6696418_6697024_-\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_CP054473.1\|WP_003096979.1\|6697069_6697363_-\|cytochrome-c5-family-protein	unknown	unknown	gnl\|CDD\|225784
NZ_CP054473.1\|WP_003102836.1\|6691998_6692592_-\|MarC-family-protein	unknown	unknown	gnl\|CDD\|170674
NZ_CP054473.1\|WP_003118453.1\|6705859_6706783_-\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226908
NZ_CP054473.1\|WP_016852288.1\|6692709_6694725_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP054473.1\|WP_003118455.1\|6698457_6701199_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP054473.1\|WP_003096976.1\|6695615_6696251_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP054473.1\|WP_174543602.1\|6707355_6708165_+\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	unknown	unknown	gnl\|CDD\|181939
NZ_CP054473.1\|WP_003096992.1\|6706852_6707356_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP054473.1\|WP_003122328.1\|6703545_6705750_-\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|274168
NZ_CP054473.1\|WP_003097004.1\|6710989_6711667_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP054473.1\|WP_003096980.1\|6697546_6698194_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP054473.1\|WP_003122325.1\|6708987_6709776_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274513
NZ_CP054473.1\|WP_003096998.1\|6708157_6708946_+\|zinc-ABC-transporter-permease-subunit-ZnuB	unknown	unknown	gnl\|CDD\|181938
NZ_CP054473.1\|WP_003096987.1\|6702839_6703529_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223287
NZ_CP054473.1\|WP_003096984.1\|6701276_6701567_+\|DUF2782-domain-containing-protein	unknown	unknown	gnl\|CDD\|378588
NZ_CP054473.1\|WP_003102827.1\|6701600_6702551_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|235369
NZ_CP054473.1\|WP_003097007.1\|6711743_6712526_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
NZ_CP054473.1\|WP_003096975.1\|6694721_6695600_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP054473.1\|WP_003097002.1\|6709982_6710990_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863

Protein	Function_ID	Function_description	E-value
NZ_CP054473.1\|WP_003102831.1\|6696418_6697024_-\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.5355e-43
NZ_CP054473.1\|WP_003096979.1\|6697069_6697363_-\|cytochrome-c5-family-protein	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	1.51706e-36
NZ_CP054473.1\|WP_003102836.1\|6691998_6692592_-\|MarC-family-protein	gnl\|CDD\|170674	PRK10739, PRK10739, YhgN family NAAT transporter.	4.81982e-48
NZ_CP054473.1\|WP_003118453.1\|6705859_6706783_-\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226908	COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism].	4.92498e-156
NZ_CP054473.1\|WP_016852288.1\|6692709_6694725_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.50465e-62
NZ_CP054473.1\|WP_003118455.1\|6698457_6701199_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP054473.1\|WP_003096976.1\|6695615_6696251_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.63388e-70
NZ_CP054473.1\|WP_174543602.1\|6707355_6708165_+\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	gnl\|CDD\|181939	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.	7.804e-113
NZ_CP054473.1\|WP_003096992.1\|6706852_6707356_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.3923e-42
NZ_CP054473.1\|WP_003122328.1\|6703545_6705750_-\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	gnl\|CDD\|274168	TIGR02504, ribonucleotide_reductase, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus, Thermoplasma, Corynebacterium, and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NZ_CP054473.1\|WP_003097004.1\|6710989_6711667_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.33335e-106
NZ_CP054473.1\|WP_003096980.1\|6697546_6698194_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	6.08635e-107
NZ_CP054473.1\|WP_003122325.1\|6708987_6709776_+\|hypothetical-protein	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	0.000920553
NZ_CP054473.1\|WP_003096998.1\|6708157_6708946_+\|zinc-ABC-transporter-permease-subunit-ZnuB	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	7.07263e-93
NZ_CP054473.1\|WP_003096987.1\|6702839_6703529_-\|hypothetical-protein	gnl\|CDD\|223287	COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism].	5.19108e-14
NZ_CP054473.1\|WP_003096984.1\|6701276_6701567_+\|DUF2782-domain-containing-protein	gnl\|CDD\|378588	pfam11191, DUF2782, Protein of unknown function (DUF2782). This is a bacterial family of proteins whose function is unknown.	3.76643e-30
NZ_CP054473.1\|WP_003102827.1\|6701600_6702551_+\|homoserine-kinase	gnl\|CDD\|235369	PRK05231, PRK05231, homoserine kinase; Provisional.	7.54032e-167
NZ_CP054473.1\|WP_003097007.1\|6711743_6712526_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	6.38438e-133
NZ_CP054473.1\|WP_003096975.1\|6694721_6695600_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	1.23885e-61
NZ_CP054473.1\|WP_003097002.1\|6709982_6710990_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0

>NZ_CP054473.1|WP_003102827.1|6701600_6702551_+|homoserine-kinase
MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHGEFVLTLVERGPVQDLPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHHCQEVGDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAALDAERPALPRANLHADLFRDNVLFDGPHLAGLIDFYNACSGWMLYDLAITLNDWCSNTDGSLDPARARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAFAGQDVLIHDPAEFEMRLAQRQNVEIHLPFAL
>NZ_CP054473.1|WP_003096984.1|6701276_6701567_+|DUF2782-domain-containing-protein
MRTLNRLMLAGLLAFAPLVAMAADDDAPSGEPDVTIRQEGDKTIQEYRVNGFLYAIKVVPKHGKPYFLVRADGSDGNFIRSDQPDKLIPQWEIFSW
>NZ_CP054473.1|WP_003118455.1|6698457_6701199_-|DNA-polymerase-I
MSQAPLVLVDGSSYLYRAFHALPPLTTSTGKPTGAVKGVLNMLLSLRKQYPDSPFAVVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEENREQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEAGENGEAETPIQAEVDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVEQVCEGIRPLMSGAATLDVPLVVEAGVGSNWDEAH
>NZ_CP054473.1|WP_003096980.1|6697546_6698194_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MSEKNPIVGLCQKASFLISAAQVDQCPPDEGLEVAFAGRSNAGKSSALNTLTHANLARTSKTPGRTQLLNFFALDDSRRLVDLPGYGYAKVPIPLKQHWQRHLEAYLSSRASLAGVFLMMDIRHPLTDFDRLMLDWAQASQLPIHVLMTKADKLAFGAAKNALLKVRREVQQGWGDVATLQLFSAPKRQGVDEAQMVLAQWLGLLDEEQEAFEEA
>NZ_CP054473.1|WP_003096979.1|6697069_6697363_-|cytochrome-c5-family-protein
MKKLLLAATVVAVAVTAQAAQDPEAVFNRTCGACHDGQLPMAPKKGDHAAWEPRLAKGMPTLVQHVTNGFNAMPPRGLCTDCSAEDYQATIQWMVKK
>NZ_CP054473.1|WP_003102831.1|6696418_6697024_-|cytochrome-c4
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGKRTVLEMTGLLTNLSDQDLADIAAYFASQKMSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
>NZ_CP054473.1|WP_003096976.1|6695615_6696251_-|thiol:disulfide-interchange-protein-DsbA/DsbL
MRNLILTAMLAMASLFGMAAQADDYTAGKEYVELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLADYLIEKERAAAKK
>NZ_CP054473.1|WP_003096975.1|6694721_6695600_-|endonuclease/exonuclease/phosphatase-family-protein
MLRRWQREPRVAGSCDPRVNPSCDDSRELPDDGRLRLLSFNIQVGISTERYRHYLTRGWQHLLPHAGRATNLKRIGELLADYDLVALQEADGGSLRSGYVNQVEHLAQLGAFPYWYQQLNRNLGRIAQHSNGLLSRWRPTLLEDHPLPGPPGRGAIFVRFGEGADALVVVMMHLALGARTRTRQLAYIRELIGDYRHQVLMGDMNTHAVDLLENSPLRDLGLMAPQVEATFPSWRPQRNLDHILLSSDLALERVDVLDQPISDHLPVSVEIRLPDNLRDKALVVRGDAGSPP
>NZ_CP054473.1|WP_016852288.1|6692709_6694725_-|diguanylate-cyclase
MSRDDVQRWKDKYLENIEQQERLQRRWDARIDLLRRGLVRSSLAAEGSDKAVDQCMKELREILRRDDMDAGLSGLIPRLEKAVLDSEQRRQQRTQQNIDALGELAQQLLALDLPRELRKPLKQFARDIEERARQSREIPILLSELSRLQRQALAERKGGDAEDGRPSLLQRLFGGKESETAAEPSASVPSVVAASNTPIQPAAAAPSLPVAEHDEAPGGPPQPLPACTVAAIESAPAGWVGVAERGEPNQILLDEAREIWLDSLPLPAGLSFSETLEEAGAEPSPAMPADVESAPEAPATPVDNLDGQAVDEAYELPPPIPEPGYSAVAPHIEASLLRLLDGLSLPSSHQPQAEALRERIDGSLNWYELVPVLDDLAVLVLSLADSGQRDFEEYLRQLNERLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLASMDEHQREQAEHEQEVSGRLQALMERVNSMEQDAKAFHSHLEDQRQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEVA
>NZ_CP054473.1|WP_003102836.1|6691998_6692592_-|MarC-family-protein
MDMFGVAVLIFLVTDPFGNIAVFLAALKGVAPGRRLRVAFRELAFALGLLLLFLTLGEHILSGLGLSREATGIAGGIILFVIAMRLIFPSPQGLLGEVPDGEPLLVPLATPAVAGPSALAMLITLRTTFDGPLWELYLAVVLAWAATALILLQAAFLQRFLGPRGLTAIERLAGMLLIMLSVDMLLDNLRSVLHIAA
>NZ_CP054473.1|WP_003096987.1|6702839_6703529_-|hypothetical-protein
MSAVKITQKIKGFKVVNEAEEQALAAAAEAASVVQMDETLERPDTLIGATYKIKSPLFEHALYVTINDMVLNAGTAHEQRRPFEIFINSKNMDHFQWIVALTRIMSAVFRKGGDCTFLVEELKAVFDPRGGYLKKGGIYMPSIVAEIGGVLERHLTAIGLLRGPELDEEQRLFLAEKRAAYEAAQGTSKVEPGEGFPAGAQLCGKCNSMAVVQMDGCATCLNCGHSKCG
>NZ_CP054473.1|WP_003122328.1|6703545_6705750_-|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase
MLRTVAGFGRPNNHREVNQRMAKTDARSPRTERGTIALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEDKASREHWYGRFLWALRNGAIPAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDGRLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGSCLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYELLAYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTDYPFEDFKDIYRYAWHQGLKGCTTFRFNPEAFQGVLVKESDLEKTRYRFELEDGSVVEFKGNEQVEYDGEIHTAANLFDALKEGYYGKY
>NZ_CP054473.1|WP_003118453.1|6705859_6706783_-|zinc-ABC-transporter-substrate-binding-protein
MTLRPFALLSACFALFLLASPARAEVSVMTSIKPLQLVAAAIQDGVGQPDVLLPPGASPHQYALRPSDVRRLREVQLFYWIGPDLENFLPKVLAGRQGASVAVQDLPGMHLRKFVNFEEEEHAGHDEHDHDHRPGMLDAHLWLLPANARTIAARMAEDLAQVDPANAGRYRANLKAFEERLGGLDGKLRERLGKLAGKPFFVFHEAFDYFEEAYGLRHTGVFAVSAEVQPGARHVAAMRAQLKAAGPACIFSEPPLRPRLADTLSEGLPVRLAELDDLGVNVSVDANGYENLLNNLAGEFAGCLEKL
>NZ_CP054473.1|WP_003096992.1|6706852_6707356_+|transcriptional-repressor
MYKIAPKTPLACQPHDHSQCVSTALAEADALCARQGVRLTELRRRVLELVWQSHKPLGAYDILAVLSETDGRRAAPPTVYRALDFLQENGLVHRIASLNAFVGCNNPEHSHQGQFLICRTCHTAIELEQPDISRAIVAGANSVGFAVESQTVEVVGLCGTCRDQKDA
>NZ_CP054473.1|WP_174543602.1|6707355_6708165_+|zinc-ABC-transporter-ATP-binding-protein-ZnuC
MDNALVRLTQVGVSFNGQAVLSDVDPAIEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGEVWRRPRLTIGYMPQKLHVDATLPLSVLRFLRLVPGVRREQALAALREVGAAHVLERPLQSISGGELQRVLLARALLRKPELLVLDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHLVMSATDQVVCLNRHVCCSGHPEQVSGDPAFVELFGQDARSLAIYHHHHDHAHDLHGEVVKAGPGALPPGTRFTPVHKHGPDCNHG
>NZ_CP054473.1|WP_003096998.1|6708157_6708946_+|zinc-ABC-transporter-permease-subunit-ZnuB
MADFLLNALLAGLALALVAGPLGSFVVWRRMAYFGDTLSHAALLGVALGFLLDVSPTLAVTVGCVLLAVLLVTLQQRQPLAADTLLGILAHSTLSLGLVTLSFMKEVRVDLMAYLFGDLLAVSASDLLWIIAGSALVLALICFLWRPLLAITVHEELAKVEGLPVGAIRLALMLLIAIVIAVAMKIVGVLLITSLLIIPAAAAQRHARSPEQMAVGASLLGLVAVCAGLALSWFKDTPAGPSIVVSAAGLFLLSFVLPRRTV
>NZ_CP054473.1|WP_003122325.1|6708987_6709776_+|hypothetical-protein
MSSFFRLLSVLAAALLVSACQGNASSQPTPVVAPQAQPADPYAELQQTLAAGKLEQAEQQWLALRSAAAGDERVEAFRRQLAEAYMQRGETALRQGDLNTATSALGHARGLMPKAPALTAGLDGAINRAKVDPARAEQARRMQQAAQQQMQQIIQTPPGGELKPLPGAPHLIDPQAASSAVPLPMLDGTGQGGLGAVLDAVAADVVAYRCRVHIEVRRDSDYPLVSDQLLARVKKLSPDFDLHLSHVVQADKPTRLILTPRN
>NZ_CP054473.1|WP_003097002.1|6709982_6710990_+|methionine-ABC-transporter-ATP-binding-protein
MIEFHDVHKTYRVAGREIPALQPTRLNIQAGQIFGLIGHSGAGKSTLLRLINRLEEPSGGRILVEGEDVTALDAEGLRRFRQRVGMIFQHFNLLSSKTVADNIAMPLRLAGGFSRAEVDARVSELLARVGLSDHARKYPAQLSGGQKQRVGIARALACRPSILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDGGAIVEQGDVADVFLHPQHPTTRRFVFEAERVDEDERHDDFAHVPGLILRLTFRGEATYAPLLGTVARQTGVDYSILSGRIDRIKDTPYGQLTLALVGGDLEAAMSQLNAADVHVEVLR
>NZ_CP054473.1|WP_003097004.1|6710989_6711667_+|ABC-transporter-permease
MDFFETMSFANIDWYEIWLASVDTFWMLGGSLLFTVVLGLPLGVLLFLTGPRQMFEQKAVYTLLSLVVNILRSLPFIILLIVMIPLTVLITGTSLGVAGAIPPLVVGATPFFARLVETALREVDKGIIEATQAMGASTRQIIWNALLPEARPGIIAAITVTAITLVSYTAMAGVVGAGGLGDLAIRFGYQRFQTDVMVVTVVMLLILVQILQTVGDKLVVHFSRK
>NZ_CP054473.1|WP_003097007.1|6711743_6712526_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLLAAFSAVAALGLTAAQAAESLTVAATPVPHAEILNVVKPLLAKEGVDLKIKEFTDYVQPNVQVSEKRLDANFFQHQPYLDEFNKAKGTDLVAVTGVHIEPLGAYSSKYKKLDELPSGATVVIPNDATNGGRALLLLDKAGVIKLKDNKSITATPKDIVDNPKNIKIRELEAATLPRVLTQVDMALINTNYALEAKLNPTKDALAIEGSDSPYVNILVARPDNKDSDAMQKLAKALHSAEVKQFIQEKYKGAVVPAF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054473_2	2.1\|1858668\|52\|NZ_CP054473\|CRISPRCasFinder	1858668-1858719	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 2.1|1858668|52|NZ_CP054473|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

511979 : 567749

uncultured_Caudovirales_phage(26.92%)

tRNA,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009875776.1\|511979_513005_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_016852408.1\|513083_513653_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|513736_514090_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003099585.1\|514080_514623_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003099584.1\|514595_515828_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
WP_016252919.1\|515871_516378_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|516471_518025_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|518021_519293_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|519393_521316_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|521594_521927_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003121837.1\|521970_522822_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|522821_523202_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003161932.1\|523238_524045_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003459378.1\|524160_525147_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|525143_526436_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_016852409.1\|526416_529206_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_031634768.1\|529338_531051_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.8e-281	82.1
WP_003099554.1\|532322_533339_+	phosphotransferase	NA	NA	NA	NA
WP_016852410.1\|533335_534010_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_016852411.1\|534011_534770_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_012613533.1\|534770_535832_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_009875783.1\|535983_538377_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|538422_539055_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|539183_540218_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003085109.1\|540451_541561_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|541616_542663_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003109044.1\|542777_544025_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|544130_544961_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|545084_545759_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003099532.1\|545758_546577_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_016852412.1\|546649_548128_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003121843.1\|548445_548760_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_003113202.1\|548859_549630_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|550087_550288_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003459419.1\|550335_550695_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|551057_551507_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003101620.1\|551528_552044_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.8e-32	43.4
WP_016852413.1\|552040_552598_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.3e-44	70.3
WP_003085143.1\|552750_553077_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003161928.1\|553073_553961_+	bacteriophage protein	S4TNY7	Salmonella_phage	4.1e-88	59.8
WP_003118911.1\|553953_554487_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.9e-62	64.6
WP_003161927.1\|554488_556594_+\|tail	phage tail protein	Q9ZXK6	Pseudomonas_virus	3.0e-222	52.7
WP_016852415.1\|556601_557042_+	hypothetical protein	NA	NA	NA	NA
WP_003121848.1\|557084_558245_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.2e-188	83.4
WP_016852416.1\|558257_558761_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.8e-64	72.8
WP_003085178.1\|558775_559120_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_019416282.1\|559289_561527_+\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_003113194.1\|561536_562409_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	2.5e-74	51.4
WP_003101635.1\|562383_562590_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003113193.1\|562647_563637_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.5e-107	55.8
WP_003113192.1\|563669_564299_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
WP_003121852.1\|564295_564658_+	hypothetical protein	H2BDA0	Pseudomonas_phage	4.2e-15	47.9
WP_003118919.1\|564654_564912_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003113175.1\|565259_565865_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
WP_003085203.1\|565866_566916_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|566912_567749_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_2

764816 : 808531

Pseudomonas_phage(85.19%)

head,integrase,lysis,terminase,tRNA,holin

attL 760514:760531|attR 799806:799823

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
760514:760531	attL	NA	NA	NA	NA
WP_003129398.1\|764816_765866_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.3e-101	53.7
WP_003158850.1\|765865_766108_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	1.1e-16	60.3
WP_174543351.1\|766091_766868_-	hypothetical protein	A0A0A0YUE3	Pseudomonas_phage	2.1e-120	95.6
WP_003085682.1\|766864_767056_-	hypothetical protein	A0A0A0YQ21	Pseudomonas_phage	9.2e-30	100.0
WP_174543352.1\|767168_768404_-	hypothetical protein	Q5QF38	Pseudomonas_virus	6.2e-42	92.9
WP_174543353.1\|768518_769262_-	hypothetical protein	A0A0A0YUE9	Pseudomonas_phage	3.0e-52	85.3
WP_049272152.1\|769263_769755_-	hypothetical protein	NA	NA	NA	NA
WP_049272151.1\|769751_770336_-	hypothetical protein	A0A2H4YEU5	Salmonella_virus	6.3e-37	38.7
WP_042939429.1\|770928_771219_-	hypothetical protein	A0A1W6JTA7	Pseudomonas_phage	3.1e-45	96.9
WP_023101753.1\|771229_771613_-	helix-turn-helix transcriptional regulator	A0A1W6JTA9	Pseudomonas_phage	1.1e-58	98.4
WP_065427460.1\|771933_772293_-	hypothetical protein	NA	NA	NA	NA
WP_031642139.1\|772289_772583_-	hypothetical protein	NA	NA	NA	NA
WP_023101755.1\|772695_773469_-	helix-turn-helix transcriptional regulator	A0A2K8HKD5	Pseudomonas_phage	3.9e-79	77.7
WP_052158443.1\|773557_773896_+	hypothetical protein	A0A1W6JTD1	Pseudomonas_phage	4.5e-11	53.7
WP_124077134.1\|773989_774241_-	hypothetical protein	NA	NA	NA	NA
WP_034055788.1\|774425_774737_+	hypothetical protein	A0A0A0YUF6	Pseudomonas_phage	5.0e-49	99.0
WP_003119033.1\|774733_775021_+	DUF3077 domain-containing protein	A0A0A0YQ33	Pseudomonas_phage	7.6e-44	100.0
WP_019396626.1\|775017_775326_+	hypothetical protein	A0A0A0YWH5	Pseudomonas_phage	5.1e-46	94.1
WP_003159050.1\|775322_775601_+	hypothetical protein	A0A0A0YR77	Pseudomonas_phage	4.2e-31	79.3
WP_003123991.1\|775593_775827_+	hypothetical protein	A0A0A0YRU7	Pseudomonas_phage	3.7e-33	97.4
WP_170869824.1\|775823_776315_+	hypothetical protein	A0A1W6JTB9	Pseudomonas_phage	1.2e-84	95.7
WP_003123989.1\|776311_777082_+	Rha family transcriptional regulator	A0A2H4J5H6	uncultured_Caudovirales_phage	2.8e-45	45.0
WP_015980941.1\|777078_777309_+	hypothetical protein	A0A1W6JTF8	Pseudomonas_phage	5.9e-39	97.4
WP_010791986.1\|777305_777500_+	hypothetical protein	NA	NA	NA	NA
WP_003123988.1\|777499_778384_+	hypothetical protein	A0A125RNK1	Pseudomonas_phage	1.2e-42	64.5
WP_003123987.1\|778380_779169_+	ATP-binding protein	A0A0A0YRV1	Pseudomonas_phage	1.2e-144	98.5
WP_031655153.1\|779201_780596_+	replicative DNA helicase	A0A0A0YUG7	Pseudomonas_phage	1.6e-251	96.3
WP_023124260.1\|780592_780964_+	hypothetical protein	A0A0A0YQ44	Pseudomonas_phage	2.7e-49	99.0
WP_174543354.1\|780960_781650_+	metallophosphoesterase	A0A0A0YWI7	Pseudomonas_phage	3.4e-130	97.8
WP_023085527.1\|781646_781931_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	2.7e-41	95.5
WP_003129671.1\|781927_782485_+	hypothetical protein	A0A0A0YRV6	Pseudomonas_phage	1.0e-73	95.0
WP_023120259.1\|783493_784024_+	Rha family transcriptional regulator	A0A0P0ZFJ1	Escherichia_phage	8.3e-28	44.2
WP_023101763.1\|784108_784441_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	4.2e-54	95.5
WP_033943150.1\|784437_785055_+	glycoside hydrolase family 19 protein	A0A0U4JP23	Pseudomonas_phage	1.2e-107	93.7
WP_033943162.1\|785054_785525_+\|lysis	lysis protein	A0A1B0Z001	Pseudomonas_phage	3.5e-70	90.4
WP_033943148.1\|785521_786265_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	6.0e-133	97.6
WP_023114595.1\|786384_786930_+\|terminase	terminase small subunit	A0A1W6JT69	Pseudomonas_phage	3.1e-94	100.0
WP_174543355.1\|786901_788848_+\|terminase	phage terminase large subunit family protein	A0A1W6JT68	Pseudomonas_phage	0.0e+00	98.5
WP_023099057.1\|788844_789048_+	hypothetical protein	NA	NA	NA	NA
WP_174543605.1\|790582_792538_+\|head	Mu-like prophage major head subunit gpT family protein	A0A2I7S8L6	Vibrio_phage	2.0e-87	32.3
WP_003127354.1\|792609_792972_+	DUF2190 family protein	NA	NA	NA	NA
WP_023103668.1\|792976_793297_+	hypothetical protein	A0A1W6JT71	Pseudomonas_phage	3.3e-16	43.5
WP_174543606.1\|793293_793764_+	hypothetical protein	A0A1W6JT75	Pseudomonas_phage	1.4e-79	91.6
WP_003159478.1\|793767_793962_+	hypothetical protein	A0A1W6JT79	Pseudomonas_phage	2.2e-26	95.3
WP_034057101.1\|793963_794716_+	hypothetical protein	A0A1B0YZT8	Pseudomonas_phage	9.9e-136	98.4
WP_050397059.1\|794797_795319_+	GspH/FimT family pseudopilin	A0A1B0YZT9	Pseudomonas_phage	1.8e-91	99.4
WP_071534544.1\|795390_795918_+	DUF4124 domain-containing protein	A0A1B0Z2K9	Pseudomonas_phage	2.5e-93	99.4
WP_034057104.1\|795982_796285_+	hypothetical protein	A0A1B0YZV7	Pseudomonas_phage	2.4e-48	99.0
WP_034004674.1\|796387_798871_+	tape measure protein	A0A1B0YZV6	Pseudomonas_phage	0.0e+00	99.3
WP_019486491.1\|798910_799432_+	hypothetical protein	A0A1W6JT98	Pseudomonas_phage	3.3e-98	100.0
WP_058149402.1\|799431_801141_+	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	1.1e-302	90.2
799806:799823	attR	NA	NA	NA	NA
WP_031642694.1\|801143_801557_+	hypothetical protein	A0A0U4JXA0	Pseudomonas_phage	5.2e-54	91.2
WP_023101774.1\|801556_802102_+	hypothetical protein	A0A1B0YZV4	Pseudomonas_phage	3.2e-91	92.8
WP_023124662.1\|802112_802535_+	hypothetical protein	A0A1B0YZV1	Pseudomonas_phage	1.4e-70	100.0
WP_174543356.1\|804037_804625_+	hypothetical protein	A0A1W6JT86	Pseudomonas_phage	1.2e-104	96.9
WP_023092534.1\|804617_804809_+	hypothetical protein	A0A1B0Z2L3	Pseudomonas_phage	8.6e-28	96.8
WP_174543357.1\|804813_805374_+	hypothetical protein	A0A1B0YZW5	Pseudomonas_phage	2.0e-96	95.7
WP_003132269.1\|805373_805655_+	hypothetical protein	A0A1W6JTD4	Pseudomonas_phage	1.0e-45	98.9
WP_003124028.1\|806579_806879_+	hypothetical protein	A0A1B0YZW1	Pseudomonas_phage	3.7e-49	98.0
WP_003132271.1\|806875_807097_+	hypothetical protein	A0A0U3DK06	Pseudomonas_phage	6.9e-21	71.0
WP_003105684.1\|807292_808531_+\|tRNA	tyrosine--tRNA ligase	A0A2C9CX69	Yersinia_phage	7.8e-53	33.3

DBSCAN-SWA_3

1391179 : 1400208

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1391179_1391815_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_174543388.1\|1391860_1392754_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1392858_1393863_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003119354.1\|1394289_1394613_-	ferredoxin family protein	NA	NA	NA	NA
WP_174543389.1\|1394679_1397247_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_003098486.1\|1397372_1398380_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|1398527_1399034_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|1399167_1400208_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_4

4095161 : 4133623

Enterobacteria_phage(33.33%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023082413.1\|4095161_4096493_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_016852876.1\|4096552_4097029_-	hypothetical protein	NA	NA	NA	NA
WP_003089493.1\|4097237_4097783_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003089494.1\|4097805_4099290_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003089495.1\|4099362_4099860_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003450950.1\|4099872_4100298_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003104926.1\|4100281_4102075_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_016852874.1\|4102038_4103055_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_016852873.1\|4103056_4105606_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	5.5e-77	29.4
WP_003122693.1\|4105627_4106200_+	hypothetical protein	NA	NA	NA	NA
WP_003104930.1\|4106359_4106548_+	hypothetical protein	NA	NA	NA	NA
WP_003114515.1\|4106547_4108554_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	7.7e-42	29.5
WP_003104933.1\|4108564_4109101_+	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_003089513.1\|4109123_4109519_-	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_003110901.1\|4109795_4110437_+	response regulator transcription factor	NA	NA	NA	NA
WP_023082412.1\|4110637_4111843_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_174543496.1\|4112259_4114575_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_003089521.1\|4114571_4115042_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_003104944.1\|4115306_4115543_-	hypothetical protein	NA	NA	NA	NA
WP_003089526.1\|4115837_4116080_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003104946.1\|4116156_4117308_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003124571.1\|4117404_4118325_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003089535.1\|4118366_4118690_-	transcriptional repressor	NA	NA	NA	NA
WP_016852871.1\|4118870_4121159_-	acylase	NA	NA	NA	NA
WP_016852870.1\|4121281_4122613_-	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA
WP_174543497.1\|4122729_4123209_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003144014.1\|4123369_4124365_+	FecR family protein	NA	NA	NA	NA
WP_003089547.1\|4124465_4125641_+	pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR	NA	NA	NA	NA
WP_003131508.1\|4125640_4127632_+	pyoverdine export/recycling transporter ATP-binding/permease subunit PvdT	G9BWD6	Planktothrix_phage	6.9e-35	39.3
WP_004343750.1\|4127637_4129062_+	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA
WP_003163333.1\|4129110_4130757_-	pyoverdine maturation tyrosinase PvdP	NA	NA	NA	NA
WP_003450962.1\|4130970_4132317_+\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA
WP_003114503.1\|4132339_4133623_+\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA

DBSCAN-SWA_5

4463107 : 4529549

Pseudomonas_phage(67.69%)

head,integrase,terminase,tRNA,protease,holin

attL 4458315:4458332|attR 4532785:4532802

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4458315:4458332	attL	NA	NA	NA	NA
WP_016852782.1\|4463107_4463620_+	hypothetical protein	L7TIE6	Pseudomonas_virus	1.2e-92	92.9
WP_012614041.1\|4463623_4463887_-	hypothetical protein	A0A0U4JX18	Pseudomonas_phage	2.4e-44	96.6
WP_016852781.1\|4463922_4464186_-	hypothetical protein	A0A0U4B0B7	Pseudomonas_phage	1.5e-35	93.0
WP_016852780.1\|4464182_4464551_-	hypothetical protein	H2BDD6	Pseudomonas_virus	6.5e-48	87.7
WP_016852779.1\|4464547_4465177_-	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.9e-111	96.2
WP_033971238.1\|4465256_4466513_-	oligosaccharide repeat unit polymerase	NA	NA	NA	NA
WP_174543507.1\|4466577_4468248_-	hypothetical protein	A0A2H5BQA0	Pseudomonas_phage	5.6e-179	71.4
WP_174543508.1\|4468308_4471038_-	hypothetical protein	A0A127KNI3	Pseudomonas_phage	0.0e+00	98.0
WP_023083741.1\|4471009_4471417_-	C40 family peptidase	Q9MC96	Pseudomonas_phage	6.5e-73	97.8
WP_023131642.1\|4471421_4471913_-	DUF1833 family protein	J7I404	Pseudomonas_phage	5.4e-90	97.5
WP_023094692.1\|4471896_4472364_-	hypothetical protein	H2BD92	Pseudomonas_phage	9.3e-92	98.1
WP_174543509.1\|4472360_4475369_-	tape measure protein	A0A125RNN2	Pseudomonas_phage	0.0e+00	98.8
WP_016852772.1\|4475368_4475986_-	hypothetical protein	A0A125RNN1	Pseudomonas_phage	2.6e-113	99.5
WP_042854841.1\|4475982_4476978_-	Ig-like domain-containing protein	J7HX84	Pseudomonas_phage	1.9e-166	98.5
WP_023125009.1\|4476992_4477367_-	hypothetical protein	J7I407	Pseudomonas_phage	3.2e-66	97.6
WP_174543510.1\|4477363_4477768_-	hypothetical protein	H2BD87	Pseudomonas_phage	1.8e-67	98.5
WP_174543511.1\|4477769_4478090_-	hypothetical protein	J7I4I8	Pseudomonas_phage	8.1e-55	94.3
WP_023083733.1\|4478086_4478488_-	hypothetical protein	J7HX89	Pseudomonas_phage	3.0e-70	97.7
WP_023083731.1\|4478799_4479258_-	hypothetical protein	A0A125RNM4	Pseudomonas_phage	8.7e-50	74.3
WP_031634261.1\|4479268_4480363_-	hypothetical protein	J7I0Q9	Pseudomonas_phage	2.0e-206	98.1
WP_023098990.1\|4480378_4480828_-	hypothetical protein	A0A125RNM2	Pseudomonas_phage	5.6e-78	100.0
WP_031634263.1\|4480831_4482109_-	hypothetical protein	A0A125RNM1	Pseudomonas_phage	2.8e-215	99.5
WP_174543512.1\|4482112_4483036_-\|head	phage head morphogenesis protein	H2BD79	Pseudomonas_phage	2.2e-169	99.0
WP_174543513.1\|4482998_4484369_-	DUF1073 domain-containing protein	A0A125RNL9	Pseudomonas_phage	3.0e-263	98.0
WP_016852759.1\|4484371_4484569_-	hypothetical protein	H2BD77	Pseudomonas_phage	5.2e-28	98.5
WP_023083725.1\|4484568_4485822_-\|terminase	PBSX family phage terminase large subunit	J7I4J3	Pseudomonas_phage	2.9e-249	99.8
WP_003131202.1\|4485805_4486348_-\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	5.0e-97	98.3
WP_174543514.1\|4486356_4486641_-\|holin	phage holin family protein	H2BD74	Pseudomonas_phage	3.8e-40	97.9
WP_004349441.1\|4486633_4487023_-	hypothetical protein	H2BD73	Pseudomonas_phage	9.9e-63	100.0
WP_023083723.1\|4487218_4488088_-	hypothetical protein	J7HXH6	Pseudomonas_phage	1.6e-153	91.7
WP_058197720.1\|4488116_4488827_-	HNH endonuclease	A0A220GJG3	Streptococcus_phage	7.7e-21	46.6
WP_023125003.1\|4488823_4489273_-	RusA family crossover junction endodeoxyribonuclease	H2BD71	Pseudomonas_phage	8.1e-77	96.6
WP_025986899.1\|4489265_4489679_-	hypothetical protein	NA	NA	NA	NA
WP_033863346.1\|4489806_4490820_-	hypothetical protein	A0A2H4JCW9	uncultured_Caudovirales_phage	2.2e-13	42.9
WP_019396727.1\|4490820_4491135_-	hypothetical protein	NA	NA	NA	NA
WP_019396726.1\|4491137_4491380_-	helix-turn-helix transcriptional regulator	A0A127KNT2	Pseudomonas_phage	7.5e-37	100.0
WP_019396725.1\|4491528_4492128_+	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	1.2e-51	51.7
WP_042854847.1\|4492181_4492499_-	DUF1654 domain-containing protein	A0A127KNY9	Pseudomonas_phage	9.5e-48	96.0
WP_023083716.1\|4492592_4492832_+	DUF1654 domain-containing protein	A0A127KND4	Pseudomonas_phage	3.0e-38	97.5
WP_174543515.1\|4493171_4493474_+	hypothetical protein	A0A0U4B0I0	Pseudomonas_phage	2.0e-47	96.0
WP_023118146.1\|4493484_4493691_+	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	1.3e-34	98.5
WP_003159461.1\|4493979_4494147_+	hypothetical protein	NA	NA	NA	NA
WP_016852941.1\|4494206_4494485_+	hypothetical protein	NA	NA	NA	NA
WP_023131632.1\|4494758_4494986_+	hypothetical protein	NA	NA	NA	NA
WP_023088286.1\|4495048_4495261_+	hypothetical protein	A0A0U1VYM8	Pseudomonas_phage	3.2e-31	95.7
WP_010793148.1\|4495295_4495664_+	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.9e-63	100.0
WP_016852747.1\|4495677_4495926_+	hypothetical protein	NA	NA	NA	NA
WP_166737315.1\|4496410_4496563_+	hypothetical protein	H2BD54	Pseudomonas_phage	2.4e-12	96.0
WP_003099037.1\|4496546_4496768_+	hypothetical protein	H2BD53	Pseudomonas_phage	1.2e-33	100.0
WP_019727225.1\|4496764_4496974_+	hypothetical protein	NA	NA	NA	NA
WP_031629737.1\|4496984_4497482_+	hypothetical protein	NA	NA	NA	NA
WP_174543516.1\|4497456_4498365_+	YqaJ viral recombinase family protein	Q858E0	Salmonella_phage	1.5e-122	72.2
WP_058144037.1\|4498377_4499268_+	recombination protein RecT	Q858E1	Salmonella_phage	3.1e-104	73.6
WP_009314053.1\|4499274_4499475_+	hypothetical protein	J7I437	Pseudomonas_phage	1.9e-30	100.0
WP_016852743.1\|4499485_4500253_+	hypothetical protein	J7I0T4	Pseudomonas_phage	6.0e-120	77.1
WP_023124991.1\|4500256_4502002_+	AAA family ATPase	H2BD46	Pseudomonas_phage	5.6e-299	96.7
WP_174543517.1\|4502144_4504775_+	DNA methylase N-4	J7I4L6	Pseudomonas_phage	0.0e+00	97.9
WP_174543518.1\|4504771_4506550_+	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	8.8e-300	97.6
WP_016852962.1\|4506546_4506990_+	hypothetical protein	A0A2K8HVL6	Pseudomonas_phage	4.0e-60	81.0
WP_016852961.1\|4506986_4507664_+	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	1.8e-64	59.0
WP_023131628.1\|4507660_4508149_+	DUF1643 domain-containing protein	A0A0U1W068	Pseudomonas_phage	2.4e-90	93.8
WP_058017696.1\|4508145_4508652_+	hypothetical protein	L7TI83	Pseudomonas_virus	4.0e-88	96.4
WP_003116724.1\|4511131_4511368_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.8e-17	53.2
WP_174543519.1\|4511369_4512437_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	5.9e-134	68.5
WP_003090386.1\|4512772_4513441_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
WP_016562011.1\|4513551_4513947_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.5e-47	71.3
WP_016562012.1\|4513943_4514303_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.1e-34	61.7
WP_003090391.1\|4514302_4514608_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003119979.1\|4514604_4514940_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003108776.1\|4514936_4515920_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
WP_016852739.1\|4516007_4516982_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003113366.1\|4516986_4518384_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003119978.1\|4518385_4519666_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-97	45.2
WP_003097632.1\|4519787_4521113_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.2e-80	39.2
WP_003090414.1\|4521122_4521749_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_003131123.1\|4521774_4524210_-	DNA translocase FtsK	G1D482	Mycobacterium_virus	1.9e-87	52.8
WP_016852738.1\|4524437_4525388_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	5.4e-62	43.0
WP_003108768.1\|4525425_4526106_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_003097644.1\|4526160_4526868_+	arginyltransferase	NA	NA	NA	NA
WP_002553999.1\|4526972_4527191_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_003090432.1\|4527272_4529549_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.4e-163	42.8
4532785:4532802	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4642095 : 4691382

Saccharomonospora_phage(20.0%)

integrase,tRNA,protease,transposase

attL 4657621:4657636|attR 4698860:4698875

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003119459.1\|4642095_4643979_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2L0V0F4	Agrobacterium_phage	4.4e-39	32.3
WP_003090610.1\|4643980_4644619_+	radical SAM protein	NA	NA	NA	NA
WP_023083426.1\|4644633_4650930_+	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_016852718.1\|4650926_4652276_+	hypothetical protein	NA	NA	NA	NA
WP_086008657.1\|4652650_4653812_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.3e-85	53.6
WP_003090655.1\|4654469_4654826_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003090661.1\|4654806_4655109_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.0e-11	38.9
WP_016852716.1\|4655112_4657491_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_174543523.1\|4657525_4658542_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	7.9e-27	33.3
4657621:4657636	attL	NA	NA	NA	NA
WP_003099086.1\|4658639_4658996_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_003090673.1\|4659019_4659214_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_003119938.1\|4659275_4659827_-	translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	1.6e-13	38.1
WP_016852715.1\|4659826_4661749_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	6.7e-128	38.5
WP_003116601.1\|4661998_4662862_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003090681.1\|4663053_4663380_+	hypothetical protein	NA	NA	NA	NA
WP_003099098.1\|4663464_4663641_+	hypothetical protein	NA	NA	NA	NA
WP_169057986.1\|4663967_4664237_-	DUF3509 domain-containing protein	NA	NA	NA	NA
WP_003090686.1\|4664453_4664687_-	hypothetical protein	NA	NA	NA	NA
WP_016852714.1\|4664740_4665523_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_003090688.1\|4665519_4665741_-	ParD-like family protein	NA	NA	NA	NA
WP_003119937.1\|4666490_4666718_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003090691.1\|4666819_4667407_+	hypothetical protein	NA	NA	NA	NA
WP_031634356.1\|4667406_4668807_+	DEAD/DEAH box helicase family protein	I4AZM6	Saccharomonospora_phage	1.9e-39	32.8
WP_023083424.1\|4668897_4669200_+	hypothetical protein	NA	NA	NA	NA
WP_174543524.1\|4669598_4669958_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_174543525.1\|4670092_4671463_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_174543526.1\|4671437_4675700_+\|integrase	integrase	NA	NA	NA	NA
WP_074861141.1\|4675692_4676328_+	hypothetical protein	NA	NA	NA	NA
WP_174543527.1\|4676383_4678360_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	4.2e-32	24.7
WP_174543528.1\|4678356_4679790_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_174543529.1\|4679789_4682993_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_044316198.1\|4683011_4683233_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044316199.1\|4683337_4683928_+	hypothetical protein	NA	NA	NA	NA
WP_074861152.1\|4683924_4685325_+	DEAD/DEAH box helicase family protein	I4AZM6	Saccharomonospora_phage	7.7e-41	32.8
WP_174543530.1\|4685468_4685873_+	hypothetical protein	NA	NA	NA	NA
WP_074861161.1\|4685890_4686172_+	hypothetical protein	NA	NA	NA	NA
WP_074861157.1\|4687188_4688091_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	4.0e-14	31.1
WP_040137976.1\|4688560_4689991_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_003103175.1\|4690182_4691382_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
4698860:4698875	attR	NA	NA	NA	NA

DBSCAN-SWA_7

5683759 : 5736394

Pseudomonas_phage(36.36%)

integrase,tRNA,coat

attL 5707592:5707608|attR 5716514:5716530

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003099340.1\|5683759_5684308_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003135089.1\|5684338_5684872_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_016852143.1\|5684871_5685414_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003121045.1\|5685432_5686221_+	molecular chaperone	NA	NA	NA	NA
WP_016852144.1\|5686237_5688610_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_003099330.1\|5688606_5689554_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003099328.1\|5689555_5690929_-	MFS transporter	NA	NA	NA	NA
WP_003099324.1\|5691208_5692231_-	ferrochelatase	NA	NA	NA	NA
WP_003099322.1\|5692227_5693145_-	TIGR01777 family protein	NA	NA	NA	NA
WP_003099318.1\|5693558_5694542_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003099314.1\|5694694_5695651_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_003094990.1\|5695660_5696560_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	8.5e-17	39.1
WP_003121048.1\|5696556_5698002_+	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	1.8e-45	27.8
WP_174543563.1\|5698127_5698649_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.4e-59	69.8
WP_003099300.1\|5698782_5699580_-	glutamate racemase	NA	NA	NA	NA
WP_174543564.1\|5699569_5700328_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_003099293.1\|5700321_5701152_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_003099290.1\|5701153_5702236_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	5.6e-07	48.3
WP_003095001.1\|5702253_5703522_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_016852147.1\|5703665_5705438_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_016852148.1\|5705442_5706060_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_003099284.1\|5706061_5706910_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003099281.1\|5707076_5708018_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	4.1e-46	35.4
5707592:5707608	attL	NA	NA	NA	NA
WP_003099279.1\|5708134_5708749_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_003099278.1\|5708790_5709375_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003099270.1\|5709415_5710516_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_003161389.1\|5710721_5711933_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	1.1e-56	34.4
WP_003161388.1\|5712194_5713295_+	Fic family protein	NA	NA	NA	NA
WP_003161387.1\|5713304_5718578_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	8.7e-61	22.9
5716514:5716530	attR	NA	NA	NA	NA
WP_003161386.1\|5718584_5721368_+	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	2.2e-39	26.7
WP_174543565.1\|5721392_5725865_+	N-6 DNA methylase	A0A1B1IUC6	uncultured_Mediterranean_phage	5.7e-37	23.7
WP_016852149.1\|5726154_5727798_+	hypothetical protein	NA	NA	NA	NA
WP_003161383.1\|5727847_5728615_+	HNH endonuclease	NA	NA	NA	NA
WP_123789187.1\|5731227_5731638_+	hypothetical protein	NA	NA	NA	NA
WP_019416334.1\|5732617_5733910_-	hypothetical protein	Q56VN8	Pseudomonas_phage	8.8e-241	92.0
WP_003159569.1\|5735431_5735782_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	5.5e-20	41.1
WP_174543611.1\|5735791_5736394_-\|coat	coat protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054473

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection