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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP050522 Streptomyces coelicolor strain M1154/pAMX4/pGP1416 chromosome, complete genome 7 crisprs csa3,DEDDh,WYL,cas4,Cas9_archaeal,Cas14u_CAS-V,cas3,c2c9_V-U4,DinG 0 1 3 0

Results visualization

1. NZ_CP050522
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050522_1 3553332-3553429 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050522_2 4618844-4618945 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050522_3 5880097-5880253 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050522_4 5880556-5880711 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050522_5 6717990-6718074 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050522_6 7324648-7324728 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050522_7 8034029-8034126 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP050522_6 6.1|7324672|33|NZ_CP050522|CRISPRCasFinder 7324672-7324704 33 NZ_CP020041 Streptomyces sp. 3211 isolate 3 plasmid p3211-2, complete sequence 158231-158263 5 0.848
NZ_CP050522_6 6.1|7324672|33|NZ_CP050522|CRISPRCasFinder 7324672-7324704 33 NZ_CP044425 Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence 504612-504644 7 0.788

1. spacer 6.1|7324672|33|NZ_CP050522|CRISPRCasFinder matches to NZ_CP020041 (Streptomyces sp. 3211 isolate 3 plasmid p3211-2, complete sequence) position: , mismatch: 5, identity: 0.848

ggggcaggggcaggggcggttcggc--gccgggcg	CRISPR spacer
ggggcaggggcaggggcagttcggtcagcaggg--	Protospacer
*****************.******.  ** ***  

2. spacer 6.1|7324672|33|NZ_CP050522|CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 7, identity: 0.788

ggggcaggggcaggggcggttcggcg---ccgggcg	CRISPR spacer
ggggcaggggcaggggctgctcggcggtttcgc---	Protospacer
***************** *.******   .**    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3663992 : 3724554 60 Streptomyces_phage(18.18%) transposase,tRNA,protease NA
DBSCAN-SWA_2 4145341 : 4152422 6 Macacine_betaherpesvirus(66.67%) integrase attL 4143328:4143342|attR 4152319:4152333
DBSCAN-SWA_3 6956464 : 7004512 34 Staphylococcus_phage(14.29%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage