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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP052072 Ralstonia solanacearum strain FJAT448.F50 chromosome, complete genome 1 crisprs RT,WYL,csa3,DEDDh,DinG,cas3 0 1 13 0
NZ_CP052073 Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence 0 crisprs NA 0 0 4 0

Results visualization

1. NZ_CP052072
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP052072_1 2319466-2319576 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP052072_1 1.1|2319493|57|NZ_CP052072|CRISPRCasFinder 2319493-2319549 57 NZ_CP025986 Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence 1200220-1200276 0 1.0

1. spacer 1.1|2319493|57|NZ_CP052072|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	CRISPR spacer
tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	Protospacer
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Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 215326 : 248279 43 Acidithiobacillus_phage(56.25%) head,capsid,terminase,transposase,portal NA
DBSCAN-SWA_2 253307 : 335482 60 Ralstonia_phage(33.33%) tail,protease,transposase NA
DBSCAN-SWA_3 868940 : 922414 51 Lactobacillus_phage(16.67%) protease,coat,transposase NA
DBSCAN-SWA_4 939420 : 949559 9 Hokovirus(14.29%) NA NA
DBSCAN-SWA_5 1560114 : 1637919 83 Ralstonia_phage(44.23%) head,tRNA,capsid,integrase,terminase,holin,transposase,plate,tail,portal attL 1565857:1565876|attR 1650077:1650096
DBSCAN-SWA_6 1830209 : 1969769 150 Pseudomonas_phage(12.96%) head,tRNA,protease,capsid,integrase,terminase,transposase,plate,tail,portal attL 1840050:1840066|attR 1901668:1902883
DBSCAN-SWA_7 2152869 : 2160176 12 Ralstonia_phage(100.0%) coat NA
DBSCAN-SWA_8 2536440 : 2622249 88 Ralstonia_phage(36.96%) tRNA,protease,capsid,integrase,terminase,holin,portal,plate,tail,head attL 2568102:2568126|attR 2610593:2610617
DBSCAN-SWA_9 2686749 : 2759212 74 Ralstonia_phage(30.3%) protease,capsid,integrase,terminase,transposase,portal,tail,head attL 2695163:2695211|attR 2743975:2744023
DBSCAN-SWA_10 2882675 : 2890911 8 Planktothrix_phage(16.67%) NA NA
DBSCAN-SWA_11 2933791 : 2947897 12 Ralstonia_phage(55.56%) tail NA
DBSCAN-SWA_12 2955714 : 3007422 58 Acidithiobacillus_phage(45.45%) head,capsid,terminase,transposase,portal NA
DBSCAN-SWA_13 3793840 : 3857252 48 Klosneuvirus(22.22%) protease,tail,holin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP052073
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 29663 : 41755 11 Ralstonia_phage(42.86%) NA NA
DBSCAN-SWA_2 699675 : 731199 31 Ralstonia_phage(27.27%) transposase NA
DBSCAN-SWA_3 1095179 : 1106074 10 Ralstonia_phage(25.0%) transposase NA
DBSCAN-SWA_4 1272228 : 1322931 35 uncultured_Caudovirales_phage(28.57%) plate,transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage