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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045554 Pseudomonas sp. 14181154 chromosome, complete genome 2 crisprs DEDDh,cas3,RT,csa3,PD-DExK,DinG,WYL 0 1 11 0

Results visualization

1. NZ_CP045554
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045554_1 3890369-3890533 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045554_2 3891717-3892115 Orphan NA
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045554_1 1.2|3890436|31|NZ_CP045554|CRISPRCasFinder 3890436-3890466 31 MN961670 Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence 592039-592069 7 0.774

1. spacer 1.2|3890436|31|NZ_CP045554|CRISPRCasFinder matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 7, identity: 0.774

tgagaactcagcgaaacagggagatcttccc	CRISPR spacer
ggtgagggcagcgaagcagggaaatcttccc	Protospacer
 * **.  *******.******.********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 179512 : 211302 37 Tupanvirus(11.11%) capsid,integrase,terminase,head,portal,protease,transposase,tail attL 201263:201310|attR 212318:212365
DBSCAN-SWA_2 254017 : 314963 54 Bacillus_phage(22.22%) transposase,holin,protease NA
DBSCAN-SWA_3 974087 : 981849 10 Thermobifida_phage(16.67%) NA NA
DBSCAN-SWA_4 1367822 : 1373850 7 Enterobacteria_phage(66.67%) NA NA
DBSCAN-SWA_5 1978165 : 2036422 59 uncultured_Caudovirales_phage(47.62%) integrase,tRNA,protease attL 1972416:1972431|attR 2039716:2039731
DBSCAN-SWA_6 3134125 : 3195522 60 Staphylococcus_phage(16.67%) coat,tRNA,integrase attL 3154688:3154702|attR 3196372:3196386
DBSCAN-SWA_7 3201110 : 3242839 70 Pseudomonas_phage(30.23%) terminase,head,tail,plate NA
DBSCAN-SWA_8 3467852 : 3557037 111 Pseudomonas_phage(54.9%) plate,integrase,terminase,holin,tRNA,transposase,tail attL 3480505:3480521|attR 3564699:3564715
DBSCAN-SWA_9 4570651 : 4648120 86 Pseudomonas_phage(40.0%) capsid,integrase,terminase,head,portal,holin,tRNA,protease,transposase,tail attL 4580082:4580098|attR 4649904:4649920
DBSCAN-SWA_10 4826325 : 4880435 41 Escherichia_phage(18.18%) transposase,protease,integrase attL 4818834:4818858|attR 4874407:4874431
DBSCAN-SWA_11 5479111 : 5507849 24 Salmonella_phage(22.22%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage