CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053929	Pseudomonas sp. B14-6 chromosome, complete genome	3 crisprs	csa3,DEDDh,DinG,WYL,cas3,PD-DExK	1	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053929_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053929_1

3024727-3024829

Orphan

Consensus_repeat	Method
AAGAGATTGGTTGGCTGTCAGGCCGCCTTCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053929_1

>merge|NZ_CP053929|1|3024727-3024829|CRISPRCasFinder
AAGAGATTGGTTGGCTGTCAGGCCGCCTTCGCGAGCAGGCTCGCTCCTACAGTGGAATGGGTGTACCTGCAAGAGATTGGTCGGCTGTCAGGCCGCCTTCGCG

>NZ_CP053929|1|1|3024727-3024829|CRISPRCasFinder
AAGAGATTGGTTGGCTGTCAGGCCGCCTTCGCG	AGCAGGCTCGCTCCTACAGTGGAATGGGTGTACCTGC
AAGAGATTGGTCGGCTGTCAGGCCGCCTTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053929.1\|WP_010457616.1\|3023963_3024320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053929.1\|WP_077750479.1\|3021962_3022364_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|226130
NZ_CP053929.1\|WP_172791546.1\|3029836_3031264_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226019
NZ_CP053929.1\|WP_010457606.1\|3019878_3020871_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP053929.1\|WP_010457614.1\|3023149_3023746_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
NZ_CP053929.1\|WP_077749907.1\|3039025_3039694_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP053929.1\|WP_010457608.1\|3020967_3021867_-\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NZ_CP053929.1\|WP_172792579.1\|3015021_3016206_+\|4-hydroxybenzoate-3-monooxygenase	unknown	unknown	gnl\|CDD\|236198
NZ_CP053929.1\|WP_077749883.1\|3038307_3039021_-\|InaA-protein	unknown	unknown	gnl\|CDD\|182136
NZ_CP053929.1\|WP_172791543.1\|3018881_3019757_-\|ATPase	unknown	unknown	gnl\|CDD\|274008
NZ_CP053929.1\|WP_172791542.1\|3013936_3014833_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380403
NZ_CP053929.1\|WP_077750482.1\|3017939_3018788_-\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|377967
NZ_CP053929.1\|WP_172791544.1\|3025562_3027614_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP053929.1\|WP_169857913.1\|3032369_3033467_+\|DUF1513-domain-containing-protein	unknown	unknown	gnl\|CDD\|226021
NZ_CP053929.1\|WP_010457626.1\|3033707_3034856_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP053929.1\|WP_010457628.1\|3034869_3037905_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|169983
NZ_CP053929.1\|WP_172791545.1\|3027847_3029191_+\|peptidase	unknown	unknown	gnl\|CDD\|226018
NZ_CP053929.1\|WP_010457623.1\|3031290_3032355_+\|lipoprotein	unknown	unknown	gnl\|CDD\|226020
NZ_CP053929.1\|WP_010457612.1\|3022370_3022973_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP053929.1\|WP_077749882.1\|3038077_3038305_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP053929.1\|WP_010457614.1\|3023149_3023746_+\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	7.48219e-113
NZ_CP053929.1\|WP_077750479.1\|3021962_3022364_+\|ACT-domain-containing-protein	gnl\|CDD\|226130	COG3602, COG3602, Uncharacterized protein conserved in bacteria [Function unknown].	3.65135e-57
NZ_CP053929.1\|WP_172791546.1\|3029836_3031264_+\|c-type-cytochrome	gnl\|CDD\|226019	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion].	0
NZ_CP053929.1\|WP_010457606.1\|3019878_3020871_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.70205e-55
NZ_CP053929.1\|WP_172791544.1\|3025562_3027614_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.48137e-115
NZ_CP053929.1\|WP_077749907.1\|3039025_3039694_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.88074e-17
NZ_CP053929.1\|WP_010457608.1\|3020967_3021867_-\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	3.14403e-155
NZ_CP053929.1\|WP_172792579.1\|3015021_3016206_+\|4-hydroxybenzoate-3-monooxygenase	gnl\|CDD\|236198	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.	0
NZ_CP053929.1\|WP_077749883.1\|3038307_3039021_-\|InaA-protein	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	3.19865e-48
NZ_CP053929.1\|WP_172791543.1\|3018881_3019757_-\|ATPase	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.03362e-06
NZ_CP053929.1\|WP_172791542.1\|3013936_3014833_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380403	cd06999, cupin_HpaA-like_N, AraC/XylS family transcriptional regulators similar to HpaA, N-terminal cupin domain. Members of this family contain an N-terminal cupin domain and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain, similar to Escherichia coli 4-hydroxyphenylacetate catabolism regulatory protein HpaA (also known as 4HPA). HpaA is encoded by the hpaA gene which is located upstream of hpaBC. It is activated by 4-HPA, 3-HPA and phenylacetate, and represents a member of the AraC/XylS family of regulators that recognizes aromatic effectors. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.56929e-50
NZ_CP053929.1\|WP_077750482.1\|3017939_3018788_-\|cache-domain-containing-protein	gnl\|CDD\|377967	pfam08269, dCache_2, Cache domain. Double Cache domain 2 (dCache_2) may be a result of single Cache domain 2 (sCache_2) duplication.	1.49562e-09
NZ_CP053929.1\|WP_010457626.1\|3033707_3034856_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	5.12431e-78
NZ_CP053929.1\|WP_169857913.1\|3032369_3033467_+\|DUF1513-domain-containing-protein	gnl\|CDD\|226021	COG3490, COG3490, Uncharacterized protein conserved in bacteria [Function unknown].	6.07701e-151
NZ_CP053929.1\|WP_010457628.1\|3034869_3037905_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
NZ_CP053929.1\|WP_172791545.1\|3027847_3029191_+\|peptidase	gnl\|CDD\|226018	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism].	0
NZ_CP053929.1\|WP_010457623.1\|3031290_3032355_+\|lipoprotein	gnl\|CDD\|226020	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only].	3.34787e-116
NZ_CP053929.1\|WP_010457612.1\|3022370_3022973_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.55159e-71

>NZ_CP053929.1|WP_010457616.1|3023963_3024320_-|hypothetical-protein
MDKLIPDPPVNIAPTTEAETLLKDHEAIKRALDYYLDPPNQYLEKPRRPSTMFMIAPDMDTESLLAQACESLASASVMASDFASNLIGPQRNTVLAIQQIIMLAELAVNRALDNVDPA
>NZ_CP053929.1|WP_010457614.1|3023149_3023746_+|superoxide-dismutase
MAFELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKSSSGGIFNNAAQVWNHTFYWNCLAPNAGGQPTGALAEAINASFGSFDKFKEEFSKTSIGTFGSGWGWLVKKADGSLALASTIGAGNPLTSGDTPLLTCDVWEHAYYIDYRNVRPKYVEAFWNLVNWKFVAEQFEGKTFKA
>NZ_CP053929.1|WP_010457612.1|3022370_3022973_+|amino-acid-transporter
MWQSYVNGLLVAAGLIMAIGTQNAFVLAQSLRREHHLPVAALCVTCDALLVAAGVFGLATVLAQNPTLLAVARWGGAVFLIWYGSQALRRACSKQSLQQGENQTVRSLRAVMLSALAVTLLNPHVYLDTVLLIGSLGAQQTEPGAYVVGAASASLLWFFTLALGAAWLAPWLARPSTWRILDLLVAVMMFAVAFQLIVAS
>NZ_CP053929.1|WP_077750479.1|3021962_3022364_+|ACT-domain-containing-protein
MAGETSLATLLRSMSPHLNEGEYVFCTLRDGQLPAGLAIVGSFREQEGLTVILERSLAEQAGFSFDYVAAWITLNVHSALEAVGLTAAFATALGKAGISCNVIAGYYHDHLFVGQADAQRAMHVLRDLAANAE
>NZ_CP053929.1|WP_010457608.1|3020967_3021867_-|LysR-family-transcriptional-regulator-ArgP
MFDYKLLSALAAVVEQAGFERAAQVLGLSQSAISQRIKLLEARVGQPVLVRVTPPAPTEIGRRLLNHVQQVRLLERDLQTLVPALDEEGLPERLRIALNADSLATWWAAAVSDFCAEQHLLLDLVVEDQTVGLKRMRAGEVAACICASERPVAGARSVLLGAMRYRALASPAFIARHFPEGVRADLLAKTPALVFGPDDFLQHRYLASLGVDGGFEHHLCPSSEGFIRLTEAGLGWGLVPELQVREQLERGVLQELLPDKPIDVPLYWHHWRNGGQLLGLLTDQLVRSSKQWLVPWKQP
>NZ_CP053929.1|WP_010457606.1|3019878_3020871_-|NAD(P)-dependent-oxidoreductase
MKILVTGASGFIGGRFARFALEQGLDVRVNGRRAESVEHLVRRGAEFIPGDLSDPELARELCSDVEAVVHCAGAVGLWGRYQDFHQGNVQVTENVVEACLKQRVRRLVHLSSPSIYFDGRDHLGLTEEQVPKRFKHPYAATKFLAEQKVFGAQEFGLETLALRPRFVTGAGDMSIFPRLLNMQRKGRLAIIGNGLNKVDFTSVQNLNEALLSSLLASDSALGKAYNISNGTPVPLWDVVNYVMRKMEVPQVTRYRSYGLAYSVAALNEGVCKLWPGRPEPTLSRLGMQVMNKNFTLDISRARHYLDYDPKVSLWTALDEFCGWWKAQDIR
>NZ_CP053929.1|WP_172791543.1|3018881_3019757_-|ATPase
MSMRNDANDDFDDVPSLRADVPDDDDFPTSKRTSVHSRTAPVVKVKSASTGPLWALVGALFFAFAGLAWWSFQQISLMEQQLVATQESFARISEDAAGRLQDISGKVVASQTNVTSDSEALKLQIKQLENQLQDQSKQQQGVVGQTSDLDKRLAQMTAQTTDLDKRLAQMTAQSTEHQAANTQLQAQVKALSTELAALKSAPDDTSKFDAQLKSLGADIVALKKQGNPSAAIERLEQDMIVLKSQQDNRPASAQGVTNTAEFDAFRGQTTRNINTLQAQIQNLQQQLRARQ
>NZ_CP053929.1|WP_077750482.1|3017939_3018788_-|cache-domain-containing-protein
MGVLHKWAVLGWMLLLCLGQVQAATAEKDDSQAAKALLEKALAYYHDNGDKAFAAFSRQGEFVDKDRYVFVVDTKGVMLASGGPSSALIGRDVTETLGPDLQKAFKDALKVPEGNGIQQAEYRWQNWSDGKVERKHVFYQRVGQRILAVGYYLPRASAEQAMALLNKAATDLAKDEKGTLTAINSLKGGYLQDDLYVFVVDLNTQRYVAHGTNLRLINTDFGKIKDPEGKPVGEPILALIAKQDYGEYEYRWKNPVTSKVEDKHAYLKKVGHFLVAVGYYSP
>NZ_CP053929.1|WP_172792579.1|3015021_3016206_+|4-hydroxybenzoate-3-monooxygenase
MKTQIAIIGAGPSGLLLGQLLHNAGIDTLILERQPPDYVLGRIRAGVLEQGMVELLRQAGVGQRMDAEGLVHGGFELALDGRRVHIDLQALSGGKTVMIYGQTEVTRDLMAARREAGAQTIYQAGNVVPHAMKTAEPFVTFEKDGETWRLDCDYIAGCDGFHGVARQSIPAECLKVFERVYPFGWLGILADTPPVHDELVYARHERGFALCSMRSATRTRYYLQVPADEKVEAWSDERFWEELKSRLPAALANTLVTGPSIEKSIAPLRSFVVEPMQYGRMFLVGDAAHIVPPTGAKGLNLAASDVSTLFTILQKVYTEGRLDLLEKYSEICLRRVWKAERFSWWMTSMLHRFDDHDAFSQRICESELDYFVHSEAGRKTIAENYVGLPYEAIE
>NZ_CP053929.1|WP_172791542.1|3013936_3014833_-|helix-turn-helix-domain-containing-protein
MNKPDLPSIPVFKLYGESLDWPTPDLLHCETISKRSREHQWEIKPHRHADLCQLLFVFKGQAELEIEGKHTELTEPTILILPPLSVHGYRFSEDVEGFVVTLAAPLIAHLQAQLGNSVNALAQAESYPAGKDSDYLNSLFSALQEEYTGHQPAREMLMHSLVSVIMVWVSRQVISRRAASQRPHRAREYLNGFIQLVEETYRQHVKVEDLAHRLGISVSHLNGTCRELAGQPALQIMHERQLLEAKRLLTYTSMTIYEMSDVLGFSDPTNFTRLFRRRVGISPKAFRDRLKADQDNEA
>NZ_CP053929.1|WP_172791544.1|3025562_3027614_+|EAL-domain-containing-protein
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVANDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDEAVRQASIGHPSEAMLAQKSRELHHSNSRWLTDLILGKERTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVNSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTEINPDRPSEHKIPLLKGHEKNELGIWINTANQLLESIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLVVGLDDFKGINEQFSYQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAAFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKTRSRNRYQFYIASVDTEMRRRRELEKDLRDALRRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACKQLREWHDQGFPDLRMAVNLSTVQLHHAELPRVVNNLLQMYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIISEGCHEGQGYHYSKPLPARELSAYLKQAQRSNAAIL
>NZ_CP053929.1|WP_172791545.1|3027847_3029191_+|peptidase
MIRMPLATASLLAIAISLAGCGEGKDKNAATPTPAASTAAAPAAAPAATSKVDEAAAKAVVAHYADIVYAVYSDAESTAKTLQTAVDAFLAKPNADTLKAAKAAWVAARVPYLQSEVFRFGNTIIDDWEGQVNAWPLDEGLIDYVDKSYEHALGNPGATANIIANTQVQVGEDKIDVKDITPEKLASLNELGGSEANVATGYHAIEFLLWGQDLNGTGPGAGNRPASDYLEGKGATGGHNDRRRAYLKSVTQLLVSDLEEMVGNWKPNVADNYRATLEAEPVDSGLRKMLFGMGSLSLGELAGERMKVSLEANSPEDEHDCFSDNTHNSQFYDAKGIRNVYLGEYTRADGTKMTGASLSSLVAKADPAADTALKADLAATEAKMQVIVDHDNKGEHYDQLIAAGNTAGNQIVRDAIAALVKQTGSIEAAAGKLGISDLNPDNADHEF
>NZ_CP053929.1|WP_172791546.1|3029836_3031264_+|c-type-cytochrome
MPSLLLRLSALFLALGLSACDDAPRFTKAEPGEARSGGAATVRKTDQNAFSLPSANLSPSRRVDFSVGNSFFRNPWVIAPSTTTARDGLGPLFNTNACQGCHIKDGRGHPPTPGAANAVSMLVRLSIPNAPAYANVIEQLGVVPEPVYGGQFQDMAIPGVTPEGKVRVDYTPVPVRFKDGTEIELRKPSLNITQLGYGPMHPDTRFSARVAPPMIGLGLLEAIPDEAILANAEAQAKDKNGIAGRPNRVWDDVQQKTVLGRFGWKAGQPNLNQQNVHAFSGDMGLTTSLRPFDDCTEAQTACKQAPTGNGPNGEPEVSDNILRLVLFYSRNLAVPARRDVNAPEVLAGKNLFFQAGCQSCHTPKYTTAANAAEPELANQVIRPYSDLLLHDMGDGLADNRSEFQASGRDWRTPPLWGIGLTQAVSGHTQFLHDGRARNLLEAVLWHGGEAKAAQQQVLSFNAEQRAALLAFLNSL
>NZ_CP053929.1|WP_010457623.1|3031290_3032355_+|lipoprotein
MFRPKLLFTSLAALALGACSPQDPQAVTSAAIAKSVILPTYTRWVEADRQLAVSALAYCEGKENLDTARADFLHAQKAWAELQPLLIGPLAEGNRAWQVQFWPDKKNLVGRQVEQLVTAQPQIDAAALAKSSVVVQGLSAYEYILFDSKPDVANDAQKAKYCPLLKAIGERQKLLAEEILQSWNNTDGMLAQMSKFPNQRYADSHEAIADLLRVQVTALDTLKKKLGTPMGRQSKGVPQPFQADAWRSQSSLAGLEASLAAAKTVWEGVDNKGLRGLLPSEQKPLADKIDAAYAASLKLFASNQRSLTEMLNDDAGRQQLNDLYDSLNVVHRLHEGELAKALGIQLGFNANDGD
>NZ_CP053929.1|WP_169857913.1|3032369_3033467_+|DUF1513-domain-containing-protein
MLRRQALTLGSLLLGAVTLGGWTLFKQKDKSPLLLSARDDGDGKHYAVGYRLDGTRVFATQVGQRCHDIINHPTLPIALFVARRPGTESYLIDLRDGALLQTVASLPNRHFYGHAVIHKSGDWLYATENDTSDPGRGLLGVYKFEGERLVHSGEISTHGIGPHQVSWMPDGETLVVANGGIRTEAESRVEMNLNAMEPSLVLMQRDGTLLSKETLAQPMNSVRHLGIASDGTIVAGQQFMGPSHESSELLAIKRPGQPFVAFAVPEHQLQAMGHYTASVAVHSDLRLVALTAPRGNRFFIWDLDSGEVRLDAPLPDCAGVGAVADGFVVTSGQGRCRYYDCRQTTLVAKPLELPAGLWDNHLHLI
>NZ_CP053929.1|WP_010457626.1|3033707_3034856_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MLRRRMLIMLGVVLLIVLILAGYKAFSIYTMIQGFSAPKPPISVAATTAVERPWQARLPSVGTLKALQGVDLSLETDGTVIDLQFESGQKVKAGQPLLLLDSVVETALLETAQADLGLAQLDYGRGSQLVGSQAISKGEFDRLSAILKKSRATVNQLKAALAKKRLLAPFSGTIGIRQVDIGDYLASGTMIATLQDLSSLYVDFFVPEQSVPKIGVGQSVQIIVSAYPTQTFPGTISAINPKVENSTRNVQVRATLANPDGNLLPGMYASLQVMLPDPQPRIVVPQSAITYTLYGNSLYVVAQKKAEDGSLEKDDKGQPILIAERRFIETGERRDGLVVITKGLQNGEKVVTAGQIKLDNGAHIAISDDKTLTDKNSQPRTD
>NZ_CP053929.1|WP_010457628.1|3034869_3037905_+|multidrug-efflux-RND-transporter-permease-subunit
MAFTDPFIRRPVLATVVSLLIVLLGFQAWSKLPLRQYPQMENALITVTTAYPGANAETIQGYITQPMQQSLASAEGIDYMTSVSRQNFSVISIYARIGSNSDRLFTELLAKANEVKNRLPQDAEDPVLSKEAADASALMYISFFSKELSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLAASDVTNAVRQYNFLSAAGEVKGEYVVTSINANTELKSAEAFAAIPLKVEGDSRVLLSDVARVEMGAENYDSISSFGGTPSVYIGIKATPGANPLDVIKEVRKIMPELEAQLPPNLKGEIAYDATLFIQASIDEVVKTLFEAVLIVIVVVFLFLGALRSVVIPVVTIPLSMIGVMFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKKPLDAAIEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVVISGVVALTLSPMMCALLLRHDENPSGLAHRLDLIFEGLKRRYQSMLHGTLNTRPVVLVFAVIVLCLIPVLLKFTKSELAPDEDQGIIFMLANAPQPANLDYLNTYTDEFITIFKEFPEYYSSFQINGFNGVQSGIGGFLLKPWNERDRTQMAILPEVQRKLEGIAGLQVFGFNLPSLPGTGEGLPFQFVINTANDYEALLQVMDRVKKRAMESGKFAFVDVDLAFDKPEVVVDIDRAKAAQMGVSMQDLGGTLATLLGQAEINRFTIEGRSYKVIAQVERPFRDNPDWLNNYYVKNNQGQLLALSTLITVSDRARPRQLNQFQQLNSAILSGVPLVSMGEAIDVVRQITLEEAPAGFAMDYAGASRQYVQEGSALWVTFALALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPLFLGWSSMNIYTQVGLVTLIGLITKHGILIVEFANQLRREKGLTPREAVEEAAAIRLRPVLMTTAAMVFGMVPLIIATGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLAKPDAKEHS
>NZ_CP053929.1|WP_077749882.1|3038077_3038305_-|hypothetical-protein
MKLEIARGVFLIGALAVASLAVAAWEQPRTQVLSSVNGDAHCPLPRVAKASVASQPDHDLLLFMFGLSQGMRPQS
>NZ_CP053929.1|WP_077749883.1|3038307_3039021_-|InaA-protein
MAVQCAAETDVASQDRFDYFWNQRGEWVEEPNVRRGGESGVQRVMGNDGQLLYAKRQTGHIYRSWLHPFGRPTVLRERDALIGLRALGVGVPEIVFCGAQRDPVHKWRALLVTKSLDGFEEIEHWYAGGGRERHGEAVHDRVLKDLAENLARMHKGRWQHSCIYIKHVFVRVTGEGESAKVEIALIDLEKCRQRLTAYRAAAHDMKQLRRHSSFSTADWRKLVYFYETAFGSAIKGL
>NZ_CP053929.1|WP_077749907.1|3039025_3039694_-|class-I-SAM-dependent-methyltransferase
MDGPIKLDFSEKYDDQHAQRYLQKHQDGLGRKLSHWRDVQLARKALKLVGEPGLVLDLPCGAGRFWPMLAEKANRAIIGADNSESMLKIATQAQPADVVKRVQPLHTSAFDIALPDNAVDSIFCMRLLHHIGEAEHRLAILREFERVTRDSVILSLWVDGNFKAWKRKRSEKRRGQEGYQNRFVLPAATVEKEFEQAGFRIQERLDFLPLYAMWRVYVLRKR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP053929_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053929_2

3149849-3149951

Orphan

Consensus_repeat	Method
AGAGATTGGTCGGCTGTCAGGCCGCCTTCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053929_2

>merge|NZ_CP053929|2|3149849-3149951|CRISPRCasFinder
AGAGATTGGTCGGCTGTCAGGCCGCCTTCGCGAGCAGGCTCGCTCCCACATTTGGATTGCGTACATCTGTCAGAGATTGGTCGGCTGTCAGGCCGCCTTCGCG

>NZ_CP053929|2|2|3149849-3149951|CRISPRCasFinder
AGAGATTGGTCGGCTGTCAGGCCGCCTTCGCG	AGCAGGCTCGCTCCCACATTTGGATTGCGTACATCTGTC
AGAGATTGGTCGGCTGTCAGGCCGCCTTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053929.1\|WP_172791571.1\|3141904_3142687_+\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP053929.1\|WP_083375822.1\|3145606_3148018_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NZ_CP053929.1\|WP_172791573.1\|3149354_3149732_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053929.1\|WP_154501569.1\|3154723_3155503_+\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	unknown	unknown	gnl\|CDD\|273244
NZ_CP053929.1\|WP_010457788.1\|3150472_3152890_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP053929.1\|WP_077749807.1\|3142860_3143511_-\|Pr6Pr-family-membrane-protein	unknown	unknown	unknown
NZ_CP053929.1\|WP_172791574.1\|3153048_3153522_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053929.1\|WP_172791572.1\|3148504_3148882_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053929.1\|WP_010457768.1\|3140327_3140819_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367947
NZ_CP053929.1\|WP_172791575.1\|3157087_3158464_-\|multicopper-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225043
NZ_CP053929.1\|WP_010457805.1\|3158587_3158878_-\|PTS-transporter-subunit-EIIB	unknown	unknown	gnl\|CDD\|273920
NZ_CP053929.1\|WP_077749325.1\|3153649_3154042_+\|protease-inhibitor-I42-family-protein	unknown	unknown	gnl\|CDD\|378179
NZ_CP053929.1\|WP_172791570.1\|3137690_3140213_-\|CS1-pili-formation-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|374266
NZ_CP053929.1\|WP_010457799.1\|3155499_3156456_+\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898
NZ_CP053929.1\|WP_077749806.1\|3144027_3145410_+\|porin	unknown	unknown	gnl\|CDD\|226185
NZ_CP053929.1\|WP_007903672.1\|3143513_3143744_-\|DUF2132-domain-containing-protein	unknown	unknown	gnl\|CDD\|378300
NZ_CP053929.1\|WP_010457769.1\|3141329_3141908_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP053929.1\|WP_077749326.1\|3156590_3157088_-\|tRNA-adenosine(34)-deaminase-TadA	unknown	unknown	gnl\|CDD\|223663
NZ_CP053929.1\|WP_172791576.1\|3158880_3161415_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP053929.1\|WP_172792581.1\|3154044_3154680_+\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946

Protein	Function_ID	Function_description	E-value
NZ_CP053929.1\|WP_172791571.1\|3141904_3142687_+\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	3.70056e-87
NZ_CP053929.1\|WP_083375822.1\|3145606_3148018_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP053929.1\|WP_154501569.1\|3154723_3155503_+\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	gnl\|CDD\|273244	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase. This tRNA methyltransferase is involved, together with cmoB, in preparing the uridine-5-oxyacetic acid (cmo5U) at position 34. [Unknown function, Enzymes of unknown specificity].	2.09457e-99
NZ_CP053929.1\|WP_010457788.1\|3150472_3152890_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP053929.1\|WP_172792581.1\|3154044_3154680_+\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	1.83011e-31
NZ_CP053929.1\|WP_172791575.1\|3157087_3158464_-\|multicopper-oxidase-family-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.86865e-94
NZ_CP053929.1\|WP_172791576.1\|3158880_3161415_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP053929.1\|WP_010457768.1\|3140327_3140819_-\|hypothetical-protein	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	0.000187565
NZ_CP053929.1\|WP_010457805.1\|3158587_3158878_-\|PTS-transporter-subunit-EIIB	gnl\|CDD\|273920	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.80324e-07
NZ_CP053929.1\|WP_077749325.1\|3153649_3154042_+\|protease-inhibitor-I42-family-protein	gnl\|CDD\|378179	pfam09394, Inhibitor_I42, Chagasin family peptidase inhibitor I42. Chagasin is a cysteine peptidase inhibitor which forms a beta barrel structure.	4.54226e-26
NZ_CP053929.1\|WP_172791570.1\|3137690_3140213_-\|CS1-pili-formation-C-terminal-domain-containing-protein	gnl\|CDD\|374266	pfam15976, CooC_C, CS1-pili formation C-terminal. CooC_C is a highly conserved C-terminal domain on fimbrial outer membrane usher proteins like TcfC. The protein is required for CS1 pilus formation.	2.45172e-24
NZ_CP053929.1\|WP_010457799.1\|3155499_3156456_+\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
NZ_CP053929.1\|WP_077749806.1\|3144027_3145410_+\|porin	gnl\|CDD\|226185	COG3659, OprB, Carbohydrate-selective porin [Cell envelope biogenesis, outer membrane].	1.79077e-149
NZ_CP053929.1\|WP_007903672.1\|3143513_3143744_-\|DUF2132-domain-containing-protein	gnl\|CDD\|378300	pfam09905, VF530, DNA-binding protein VF530. VF530 contains a unique four-helix motif that shows some similarity to the C-terminal double-stranded DNA (dsDNA) binding domain of RecA, as well as other nucleic acid binding domains.	2.105e-43
NZ_CP053929.1\|WP_010457769.1\|3141329_3141908_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.47573e-15
NZ_CP053929.1\|WP_077749326.1\|3156590_3157088_-\|tRNA-adenosine(34)-deaminase-TadA	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	7.91486e-62

>NZ_CP053929.1|WP_172791573.1|3149354_3149732_+|hypothetical-protein
MFKETPNPPPTDDVSPYESLDSKKLHDAAERALDHYLNPAALKSPATRKPSTMFLIAPDIKDEDLLAHTCESLAQASVMASDFTDYLEGPHRHKAMAIQQIVMLAELAANRMLDNVAITKPAPHC
>NZ_CP053929.1|WP_172791572.1|3148504_3148882_+|hypothetical-protein
MLKETPNPPQNDDVSPYESLDSKKLHDAAERALDHYLNPAALKSPSTRKPSTMFLIAPDIKDEELLAHTCESLAQASVMASDFADYLEGPHRHKAMAIQQIVMLAELAANRMLDNVAITKSAPHC
>NZ_CP053929.1|WP_083375822.1|3145606_3148018_+|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MSTDGALSRSRLLPTLLGILLLLMGLAMLAGGIKLSLLGGSLYYLLAGIGLTLTGVLLILARRAALGLYALVLFASTVWALWEVGLDWWQLVPRLAMLFALGLVMLLPWFRRPLLITGPAPMGTGALSVAVVLAGVAALASQFTNPGEIKGELDRDSVPGMTNTAPAMPDGDWNSYGRSAHGDRYSPLAQITPQNVNKLVPAWTYRTGDLPGPNDPGETTAENTPLKVNGMLYVCTPHSQVIALDPDTGKEIWRFDPKLSTQNAANFKGWAHMTCRGVTYHDDAVYASEQSPTGTASPAPVSTVCPRRIFLPTADTRLIALDADTGKMCEDFGDKGQVDLTANIGGFNAGGYYSTSPPAVTKDLVVIGGHVTDNVSTDEPSGVIRAFDVHTGKLVWNWDSGNPDDTTPIAEGQVYTRNSPNMWSMFAVDEKLGMLYLPMGNQTPDQFGGDRTPESELHAAGLTALDIATGQVRWHMQFTHHDLWDMDVGGQPTLMDLKTADGVKPAVLASTKQGSIYVLDRSTGKPIVPINEVPVPQGAVAGDHTSPTQPKSDLNLMPPPLQERDMWGVTPFDQLICRIDFKSMRYDGPFTPPSLQGSIVYPGNFGVFDWGGIAVDPVRQIAFVNPSYMAFKSKMIPAAEIAAQGPRKSETEGVQPNKGAPYGVVLEALLSPMGLPCQAPAWGYVAAVDLTTQKTIWKHKNGTVRDSSPVPIPLSMGVPSLGGTFTTAGGVGFLSGTLDQYLRAYDVKNGKQLWEGRLPAGAQTTPMTYTGKDGKQYVLVVAGGHGSLGTKQGDYVIAYKLSE
>NZ_CP053929.1|WP_077749806.1|3144027_3145410_+|porin
MPDFPTPRDSAVCIAIASRKALNLIGGFTAFGLATCTQAAPAFDSESPWMLGDWNGTRTELSEKGYDFKVDYTGEMGSNLHGGYDHDRTARYSDQFGFGTHLDLQKILGWDDAEFQLTVTERNGNNISNDRINDPRVGGFTSAQEVWGRGQTWRLTQMWYQQKFFDQKLDIKVGRFGEGEDFNSFPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWAMRVKYHLTPELYAQIGAYEQNPSNLDRGNGFKLSGSGTQGAILPVELVWSPTLNGLPGEYRAGYYYSNAKATDAYKDSNGQPAALSGEAYRSASSKHGVWLGVQQQITSRASDNSRGLSVFANGTMHDKKTNAIDNYVQAGVVYKGLFDARAKDDIGFALARVHVNPAYRKNAEATNQARVVYDYDDPSFLPPQDTEYSAELYYGVHVTNWLTVRPNLQYIRHPGGVDKVDDALIGGIKITSSF
>NZ_CP053929.1|WP_007903672.1|3143513_3143744_-|DUF2132-domain-containing-protein
MTEQNNNPLHGVTLEQILNALVEHYEWSGLAERIDIRCFKSDPSIKSSLTFLRKTPWAREKVERLYVKLMRTKRPL
>NZ_CP053929.1|WP_077749807.1|3142860_3143511_-|Pr6Pr-family-membrane-protein
MGFLSTPGSAARRRFVAVAAVLGWAGLAIQLYLILYSRWTLEASLIGGLLSFFSYFTVLTNTLVAVVLTCEWTSRESAARRWFLQPWVSSAIAVSIVVVGLAYSLLLRHLWHPEGWQFLADELMHDVMPLLFLAYWWWCVPKGTLRLRHLGLWVIYPLVYFAYSLLRGHELAVYPYPFIDVGTLGYPQVFLNAGGLLAGFVVIALIMIALDRWRGR
>NZ_CP053929.1|WP_172791571.1|3141904_3142687_+|siderophore-interacting-protein
MTEVVHTIHRVMHEIKRRRLQVLRVVDLTPRMRRITLGGPELAGFVSLGTDDHVKLLFPQKAAEHAALETLVLGAGKDNGPMPAMRDYTPRRYDLDTLELDIDFVLHGDGPASTWAEQATPGQFLHIGGPRGSMIVPDMFDSYLLIGDGTALPAIARRLEGLAANRRALVIVEVENGAEQQRLESAAQVNVIWVLREGGKDNLLTTVKQLQVPSGNLYAWVATETKVSRQIRRVLLDEHGLNEQFVKAVGYWRAEGSDEE
>NZ_CP053929.1|WP_010457769.1|3141329_3141908_+|helix-turn-helix-transcriptional-regulator
MRDHHSHRDHSDSRDGFEKRPGPGRERGGRGPRVFAPGDLKLLLLALIAEQPCHGYDLIRQIESMFDGAYCPSPGVIYPTLTFLEESEMILGDAEGGKKRYTITDAGRLSLTEQAIALDGVRMRIEVSKRSLRGHDRPAEIHEAVHNLRHALQMHHGRWSPEEILRVRDLLNNTAKAIVDGPAVQPVQEKAE
>NZ_CP053929.1|WP_010457768.1|3140327_3140819_-|hypothetical-protein
MFKTFAIAVPMTLLALSTSMAFAAEESRTSINITADIPSKVFHAQPVDKDFGKDEKMQYLVGSGTLTEVRGTYDIQHTNGSVGAYVVGGPTPLFNGNPALNIPLTYTFNGTELTADSQEVVGDTESNGGMRADLVITAEKPGNSQVGIYTANPVVIFDAIPRI
>NZ_CP053929.1|WP_172791570.1|3137690_3140213_-|CS1-pili-formation-C-terminal-domain-containing-protein
MFPMTPIATALALCFCATALAAPADNGHTPRSLLAQAKGLPSEFEEHFFDVPLAVRVELDQQFLGEAMVVLTRDDRITLVEFTDVSNSTIKASERDIWANYLKHGVVLGACQANCPEQLLAVHYSLENSLVSILTENAEHDDQVQRYYNQPEDGSTGLIVRNQLNLNGGQNQDLGGRYGLEASSSLGNWTQAVNMQLSRLGGVDNQLYHAVHELFTQRELEGNFLRLGLFTPTSEGLTRQPRSFGASPDTALGVMYGSSDSLAINNPKPAVYPIYVTANRQGSVEIYRDGLLINTQAIPAGLQTLDTRPLPGGIYEVEVRLIEDGQITSSTQELVYKPNNWRNHDERWRYNLFAGRESKMLSNWDEQADGDMTAGAAFNFLLHPRVILGLSGRQVKDTLQYGTSVDWAIVNNASVFANVYKTQDYGTGFDVQGLYSYGSGSLVASHNRSWLDTTRLYDTLPDGTRVRQRNVFIGQTSNSSLSLNHRLTSKSSVNARVSHSEGNTEGVGVDLGWTQRTQLFGSDANWRLSLFDRPGSFSSGNDRNRGLDLSVSVALGGPGEQLSGSIGTRTDRDGGRDNNASITYRKDLQDHLLQSVSATAITDTYGLGLNALATMQSDRVNGDGFIQRSSYNNDLTGGLNLDSTVAVGGQKMIVTSQYHRNGAGMIIDVESDIDDITLRADDLSGGSAVLKPGRNFVPITAYKSSSVSFDFEGNHVPAATIQPARSSYHLNKGGVDYRQIRVMRTLTVLGRLIDPQGNPLKGHHIINHASRGVSEVDGFFSMEMNAGSPTLEVRHGNQLLCQFRLDPSRGHTENNVLMIGDLRCTPDTLADLTLETPTAG
>NZ_CP053929.1|WP_010457788.1|3150472_3152890_+|endopeptidase-La
MSDQQEFPEDPSEYADPENAEHHSTGKGLALPGQNLPDKVYIIPIHNRPFFPAQVLPVIVNEEPWAETLDLVSKSDHHSLALFYMDTPQEDPRHFDTSALPLYGTLVKVHHASRENGKLQFVAQGLTRVRIRTWLKHHRPPYLVEVEYPHQPTEPTDEVKAYGMALINAIKELLPLNPLYSEELKNYLNRFSPNDPSPLTDFAAALTSATGSELQEVLDCVPMLKRMEKVLPMLRKEVEVARLQKEISAEVNRKIGEHQREFFLKEQLKVIQQELGLTKDDRSADIEQFEQRLEGKVLSSQAQKRIEEEMNKLSILETGSPEYAVTRNYLDWATSVPWGVYGEDKLDLKHARKVLDKHHAGLDDIKDRILEFLAVGAYKGEISGSIVLLVGPPGVGKTSVGKSIAESLGRPFYRFSLGGMRDEAEIKGHRRTYIGAQPGKLVQALKDVEVMNPVIMLDEIDKMGQSYQGDPASALLETLDPEQNVEFLDHYLDLRMDLSKVLFICTANTLDSIPGPLLDRMEVIRLSGYITEEKIAIAKRHLWPKQLEKAGVSKGSLSISDSALKALIDGYAREAGVRHLEKQLGKLVRKAVVKLIDEPKAVIKIGPKDLEASLGHPVFRNEQVLSGTGVITGLAWTSMGGATLPIEATRIHTLNRGFKLTGQLGDVMKESAEIAYSYVSSNLKSFGGDPKFFDEAFVHLHVPEGATPKDGPSAGVTMASALLSLARNQAPKKGIAMTGELTLTGHVLPIGGVREKVIAARRQKIFELILPEPNRGSFDELPDYLKEGITVHFAKRFADVAKILF
>NZ_CP053929.1|WP_172791574.1|3153048_3153522_+|hypothetical-protein
MTDKISPSTEELFALDGNMRFMGPGRLEFRSTDLEIRLLILNETTIGFYQNRNRPAEKHLSFTFSKDIKSGTHELAQAGPFLAANFHEVLNNQLGMQSPEHYKATKGTVNLVLLDSSPDQTSHIVTGFNLTLESSTTGKSIDLSGEFQSHMTYTTAK
>NZ_CP053929.1|WP_077749325.1|3153649_3154042_+|protease-inhibitor-I42-family-protein
MSPTRLFVPLALTLLAACATQPKQNVTVEKQGECPVQMRNGQNLILTLPSNPTTGYRWSIQDSAGGVLHALSPEVYSNPEDAGIVGSAGISTWRFQAFATGTGRLRLTYSQPWAPEVPAVKTFDCAIAVN
>NZ_CP053929.1|WP_172792581.1|3154044_3154680_+|lysoplasmalogenase
MGWLILALMGAVTFLYGLSVHAALLCLLVKPLPVLALLGWLHDAPPTEYRRWISLGLIFSLLGDVLLAWPGDLFVFGLGAFLVAHLAYLKAYLSDCRRLALLPLVIALGVGAVLLGILISHGLGPLLIPVIVYGLAISAMLWRALARLGTDVPKRSALLAAAGAVAFVFSDSVIGISRFAVPFNAAPYVIILSYWLGQWGIAASAFGPKPR
>NZ_CP053929.1|WP_154501569.1|3154723_3155503_+|carboxy-S-adenosyl-L-methionine-synthase-CmoA
MPAFSTYAAGTAVSKEPDRLFAQPLAQVPDFAFNEDVVRVFPDMIKRSVPGYPTIVENLGVLAAQFAQPNSVLYDLGSSLGAVTQALRRHVRTDGCRVIAVDNSAAMVERCREYLNGQDSMFQELLPVEVIEGDILALEFQPASVVALNFTLQFIAPDQRTALLSRIRQSLLPGGALILSEKLRFNDLEEHALLTDLHVAFKRANGYSELEIAQKRSAIENVMKPDSLEEHRERLLAAGFSKVVPWFQCLNFASLIALP
>NZ_CP053929.1|WP_010457799.1|3155499_3156456_+|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MIDLSPLARRLAGTPLAEWANTLQAQLDKKMEKGHGDLERWQSALDALPKIQPSEVDLLNGLTLDTDCDPETRAQMRTALMGLSPWRKGPFDLFGVHVDTEWRSDWKWSRVAPHLDLKGKRILDVGCGNGYYMWRMLGAGADSVIGVDPNWLFFCQFQAVQRYLSEPNAWHLPFPFEDLPPNMEGFDTVFSMGVFYHRRSPIEHLLALKDCLVKGGELVLETLVIEGDQQQVLVPEDRYAQMRNVWFLPSVPALELWLRRAGFTDVRCVDVSVTTVEEQRGTEWMKYQSLSDFLDPDDHSKTIEGLPAPMRAVIVARK
>NZ_CP053929.1|WP_077749326.1|3156590_3157088_-|tRNA-adenosine(34)-deaminase-TadA
MRQIRPAAIIDRSRDRDFMREALALAAQGAALGEVPVGAVLVQNGEIIGRGFNCPISGNDPSAHAEMVAIRAAALAASNYRLPGSTLYVTLEPCSMCAGLIVHSRIARVVYGALEPKAGIVQSQGQFFTQGFLNHRVLFEGGVLAEECGAVLSEFFKARRAKPTE
>NZ_CP053929.1|WP_172791575.1|3157087_3158464_-|multicopper-oxidase-family-protein
MSFTRRQILGGLAGLVVVGVGAGGASRYWLGKMADADAGHDYELIAAPLDVELVAGHKTEAWAFGPSAPGTELRVRQGEWLRVRFINHLPVATTIHWHGIRLPLEMDGVPYVSQLPVLPGEYFDYKFRVPDAGSYWYHPHVNSSEELGRGLVGPLIVEEREPTGFKYEKTLSLKSWHVDEEGAFVAFSIPREAARGGTAGRLSTINGVSQAVIDLPAGQITRVRLLNLDNTLTYRLNIPGVEAQIYALDGNPVEPRPMGKEYWLGPGMRICLAIKAPPAGEELSLRNGPVRLGTLRSVANTDAPTEWPAALPANPVAEPDLANAEKLNFNFEWVGSVSVNVDNGKPPSLWQINGKAWDITDKTCADRPIAKLEKGKSYIFELKNMTQYQHPIHLHGMSFKVIASNRHKVIPYFTDTYLLGKNERARVALVADNPGVWMFHCHVIDHMETGLMAAIEVA
>NZ_CP053929.1|WP_010457805.1|3158587_3158878_-|PTS-transporter-subunit-EIIB
MFEKMQRAFWKALTPDLVAEEPKAVVQPVSGLPANVVDALGGVDNLKSQQPVALTRVRVALRDVARMDRQALSVAGVPGVMMLDDGVVHLITGLQP
>NZ_CP053929.1|WP_172791576.1|3158880_3161415_-|phosphoenolpyruvate--protein-phosphotransferase
MATPQQLQLHAPLSGVLVPLDLVPDPVFSSRVIGDGLCIDPTSTTLCAPLAGVVSNVQASGHAVSITDEKGVQVLMHIGLDTVNLAGNGFTRLVEEGQQVDVGQALIEFDADFVALNARSLLTLMLVVSGEPFTWLAPETGLVDSGQPLLSLNLVEQTSDTPLTDAAEALFSKPVTLANLNGLHARPAAVFAQAAKAFSASIYLHKKQETANAKSLVAIMALQTAHGDVMQVSAAGPDAEAAIKTLAELLLTGCGEVVAGPMQVEVNAVEASSLTVLRGVCASPGSAFGQVVQIAEQNLEVNELGSTPQVERDHLSRALAEALVALQQLRDNAKSDAQADIFKAHQELLEDPGLLEVAHVLIDEGKSAGFAWRSATESAATLFKSLGNALLAERAADLADVSQRVLKQILGVRDQVMELPEGAILIAEQLTPSQTAGLDTRKVLGFATVGGGATSHVAILARAFGLPAICGLPVQVMALVNGTQVLLDADKGELQLDPDLQAIEQLQAKRQLQQQRRQHELAHATLAACTRDGHHFEVTANIASLAEAEQAMALGGEGVGLLRSEFLYLDRNHAPSHDEQASTYNAIAKVLGPTRNLVVRTLDVGGDKPLAYVPMDSETNPFLGMRGIRLCLERPQLLRDQFKAILGSAGLARLHIMLPMVTQLSELRLARQLLEEEALVLGLTELPKLGIMIEVPAAALMADLFAPEVDFFSIGTNDLTQYTLAMDRDHPRLASQADSFHPAVLRLIASTVKAAHAHGKWVGVCGAMASETLAVPLLLGLGVDELSVSVPLIPSIKAAVRELDLMDCQAIAQQVLGLESAGQVREALRLYHEATVDTSLVLEN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP053929_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053929_3

5770133-5770226

Orphan

Consensus_repeat	Method
CTGGTTCGCCGGCAAGCCTGGCTCCTACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053929_3

>merge|NZ_CP053929|3|5770133-5770226|CRISPRCasFinder
CTGGTTCGCCGGCAAGCCTGGCTCCTACAGGAGCCAGGCGGTGTACCTGACACATCAAGTCGTCTGGTTCGCCGGCAAGCCTGGCTCCTACAGG

>NZ_CP053929|3|3|5770133-5770226|CRISPRCasFinder
CTGGTTCGCCGGCAAGCCTGGCTCCTACAGG	AGCCAGGCGGTGTACCTGACACATCAAGTCGT
CTGGTTCGCCGGCAAGCCTGGCTCCTACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053929.1\|WP_102593963.1\|5777225_5777678_+\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
NZ_CP053929.1\|WP_102595392.1\|5762805_5764395_-\|right-handed-parallel-beta-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379079
NZ_CP053929.1\|WP_010463117.1\|5764421_5765909_-\|alginate-export-family-protein	unknown	unknown	gnl\|CDD\|372583
NZ_CP053929.1\|WP_169856528.1\|5768527_5770012_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|372656
NZ_CP053929.1\|WP_010463127.1\|5757241_5758417_-\|alginate-O-acetyltransferase	unknown	unknown	gnl\|CDD\|270208
NZ_CP053929.1\|WP_059406245.1\|5776511_5776985_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP053929.1\|WP_010463099.1\|5777985_5778762_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
NZ_CP053929.1\|WP_154911848.1\|5779554_5780682_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP053929.1\|WP_010463115.1\|5765905_5767312_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP053929.1\|WP_010463107.1\|5772361_5773141_-\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP053929.1\|WP_042932354.1\|5756570_5757224_-\|alginate-O-acetyltransferase-AlgF	unknown	unknown	gnl\|CDD\|371409
NZ_CP053929.1\|WP_010463098.1\|5778837_5779464_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225512
NZ_CP053929.1\|WP_010463113.1\|5767321_5768491_-\|alginate-biosynthesis-protein-Alg44	unknown	unknown	gnl\|CDD\|377796
NZ_CP053929.1\|WP_010463122.1\|5761334_5762795_-\|alginate-O-acetyltransferase	unknown	unknown	gnl\|CDD\|270207
NZ_CP053929.1\|WP_010463110.1\|5770236_5771553_-\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|274399
NZ_CP053929.1\|WP_042932353.1\|5773406_5774531_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP053929.1\|WP_077748261.1\|5758428_5759994_-\|MBOAT-family-protein	unknown	unknown	gnl\|CDD\|224610
NZ_CP053929.1\|WP_145306896.1\|5774878_5776273_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224787
NZ_CP053929.1\|WP_010463124.1\|5760189_5761323_-\|mannuronate-specific-alginate-lyase	unknown	unknown	gnl\|CDD\|238148
NZ_CP053929.1\|WP_010463101.1\|5776981_5777224_+\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|182985

Protein	Function_ID	Function_description	E-value
NZ_CP053929.1\|WP_102593963.1\|5777225_5777678_+\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	2.45005e-64
NZ_CP053929.1\|WP_102595392.1\|5762805_5764395_-\|right-handed-parallel-beta-helix-repeat-containing-protein	gnl\|CDD\|379079	pfam13229, Beta_helix, Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.	3.77666e-15
NZ_CP053929.1\|WP_010463117.1\|5764421_5765909_-\|alginate-export-family-protein	gnl\|CDD\|372583	pfam13372, Alginate_exp, Alginate export. This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.	5.64702e-83
NZ_CP053929.1\|WP_169856528.1\|5768527_5770012_-\|glycosyltransferase	gnl\|CDD\|372656	pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2. Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.	3.03679e-42
NZ_CP053929.1\|WP_010463127.1\|5757241_5758417_-\|alginate-O-acetyltransferase	gnl\|CDD\|270208	cd14442, AlgJ_like, putative alginate O-acetyltranferases AlgJ, AlgV, and similar proteins. The alginate biosynthesis protein AlgX appears to be directly involved in the O-acetylation of alginate, an exopolysaccharide that is associated with the formation of persistent biofilms, such as those by mucoid strains of Pseudomonas aeruginosa that affect patients suffering from cystic fibrosis. Its N-terminal catalytic domain resembles SGNH hydrolases, though with a permuted topology. The active site matches that of the SGNH hydrolases, is well conserved, and has been verified experimentally. Members of this family have been annotated as AlgJ or AlgV, and they closely resemble AlgX in sequence and function, although they lack the C-terminal carbohydrate binding domain of AlgX.	3.38475e-158
NZ_CP053929.1\|WP_059406245.1\|5776511_5776985_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	1.68145e-100
NZ_CP053929.1\|WP_010463099.1\|5777985_5778762_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.09441e-118
NZ_CP053929.1\|WP_154911848.1\|5779554_5780682_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.06349e-52
NZ_CP053929.1\|WP_010463115.1\|5765905_5767312_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	6.40932e-19
NZ_CP053929.1\|WP_010463107.1\|5772361_5773141_-\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	5.04592e-149
NZ_CP053929.1\|WP_042932354.1\|5756570_5757224_-\|alginate-O-acetyltransferase-AlgF	gnl\|CDD\|371409	pfam11182, AlgF, Alginate O-acetyl transferase AlgF. AlgF is essential for the addition of O-acetyl groups to alginate, an extracellular polysaccharide. The presence of O-acetyl groups plays an important role in the ability of the polymer to act as a virulence factor.	5.54948e-80
NZ_CP053929.1\|WP_010463098.1\|5778837_5779464_-\|transcriptional-regulator	gnl\|CDD\|225512	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown].	1.53356e-77
NZ_CP053929.1\|WP_010463113.1\|5767321_5768491_-\|alginate-biosynthesis-protein-Alg44	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	2.25121e-13
NZ_CP053929.1\|WP_010463122.1\|5761334_5762795_-\|alginate-O-acetyltransferase	gnl\|CDD\|270207	cd14441, AlgX_N, N-terminal catalytic domain of the putative alginate O-acetyltranferase AlgX. The alginate biosynthesis protein AlgX appears to be directly involved in the O-acetylation of alginate, an exopolysaccharide that is associated with the formation of persistent biofilms, such as those by mucoid strains of Pseudomonas aeruginosa that affect patients suffering from cystic fibrosis. This N-terminal catalytic domain resembles SGNH hydrolases, though with a permuted topology. The active site matches that of the SGNH hydrolases, is well conserved, and has been verified experimentally. AlgX contains a C-terminal carbohydrate binding domain that belongs to the wider family of CBM6-CBM35-CBM36_like domains.	5.69416e-128
NZ_CP053929.1\|WP_010463110.1\|5770236_5771553_-\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|274399	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22), GDP-mannose 6-dehydrogenase (1.1.1.132), UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase, and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.	1.49734e-161
NZ_CP053929.1\|WP_042932353.1\|5773406_5774531_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	4.48625e-16
NZ_CP053929.1\|WP_077748261.1\|5758428_5759994_-\|MBOAT-family-protein	gnl\|CDD\|224610	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane].	9.99971e-118
NZ_CP053929.1\|WP_145306896.1\|5774878_5776273_+\|PhoH-family-protein	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0
NZ_CP053929.1\|WP_010463124.1\|5760189_5761323_-\|mannuronate-specific-alginate-lyase	gnl\|CDD\|238148	cd00244, AlgLyase, Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond.	0
NZ_CP053929.1\|WP_010463101.1\|5776981_5777224_+\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	6.13524e-25

>NZ_CP053929.1|WP_169856528.1|5768527_5770012_-|glycosyltransferase
MMHRLKHGLLQAAGWLFYLSLLMGIAMALPASTFDSDSKDFIFLIGFIGIWRYSMGATHFVRGMLFLYVVYPHLRRKVRKLGDAANPSHVFLMVTSFRIDALTTAQVYASVIREAIDCGLPTTMVCSIVEMSDEKLVKSLWTKMNPPDRVKLDFVRIPGTGKRDGLAYGFRAISRHLPDDRAVVAVIDGDTVLAEGTVLKTVPWFQLFGNVGGLTTNEFCEVRGGYIMSEWHKLRFAQRHINMCSMALSKRVLTMTGRMSVFRATVVTNPDFIADVESDSLQHWRLGRFKFLTGDDKSSWFSLMRLGYDTFYVPDAAIHTVEHPPEKSFIKASRKLMFRWYGNNLRQNARALGLGVKRLGLFTSVVLFDQRVSMWTSLLGLTVALIASFKYGTAFILVYLLWIGITRLILTVLLSLSGHRIGPAYPAILYYNQIVGALVKIYVFFRLDQQSWTRQPTSLTRDLASFQRWFNTWSSRTMTFSAGSIFVAVLLMMV
>NZ_CP053929.1|WP_010463113.1|5767321_5768491_-|alginate-biosynthesis-protein-Alg44
MNTAVNANVVHESEAQRQHARVKIPAKLRFFGPDRTPVEARVIDLSAGGLAFNAGQLPLKTGDVYKARLQFVIDNLGLAMDVELLIRSVDRQTGRIGCQFQNLEPQDISTLRHLITSHLAGDIVSMGEVLATLQRDNFTKARKMKDGGHGMTAFGRLRAVTFSLAIFIVGLAAFGFIFKSVYGMYFVSHAQAGLVSVAGMNITMPRDGTVQSLIKADGVAAKGAPLATFSTSMLDVLKGHLDDNQLQPAKVEELFGKQMTGTLTSPCDCTVAQQLVANGQYASKGDVIFQLVPRNSEANVEARFSYRQFGDVLPGNTVSFQIAGEDKTRSGKIVSSTSLKSADLSSDIRVLIQPDEPLDSKFAGRPVEVNSTRGPNLNWLIDKAMAAGI
>NZ_CP053929.1|WP_010463115.1|5765905_5767312_-|sel1-repeat-family-protein
MPVTSPLRILPVPLTLAMAIALAGCAGLPDQRLANEALKRGDTALAAQNYQQLADLGYSEAQVGLADIQVDSRDPAQIKQAEATYRAAASVSPRAQARLGRLLVAKPGSTEAEQHEAEGLLKKASAAGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWRAEGKPEAGLAQVLLYRTQGTYDQHLDEVETICKAALNTTDICYVELATVYQKQAKPEQQAELIKQMQAAHARGTVTAQRVDSVARVLGDASLGKTDEKTAQSLLEGIAPGYPASWVSLAQLLYDFPELGDVDTMMKYLDNGRAADQPRAELLLGKLYYEGKMVPADAKAAEEHFKKAVDREVAADYYLGQIYRRGYLGQVYSQKALDHLLKAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKTQNTPQATELAQTLEAQLPPAQLAEAKRLLKQEQDVRGALSQNTLELHALQEEDGEESL
>NZ_CP053929.1|WP_010463117.1|5764421_5765909_-|alginate-export-family-protein
MKLNPFVKAGIGLSFALLWSCPTLAALTESKNYGLDVKITGQSQDDTDLGTASGGDVNGVGLDLRPWIYGESGAWSGYAMGQAVTSTDIIETDTLQQSDSDGTQTTDNGDRKSKKNYLAMREFWVGYSGLTPYPGEILKLGRQRLRNDDGQWRDTNIEALNWTFDTTLLRANAGVAERFSEYRTDLTELAPKDKDRLHAYADAAYQWTPGNWVGIRGHHTHDDGKLDYPQPGVPADSLDKKENGDISWIGLTADSDAYNWRNTNTVNYWGSVTGMSGDRDTVNPLNADGTPPAQAKTSGNVDGWATDLGVRLRLDPQWQVGAAYARASADYEQNGLESNRSNYTGTRSRVHRFGEAFRGEMNNMQTATLFGSWMLNDEYDASVIYHKFWRVDGNKPVGSNGINAVQNDTDDVTGAVLSSTSLPLEDGNKDLGQEMDVVVTKYFKQGLLPASLSQSIDEPSALVRLRGGVFKPGDAYGKGVDSYMHRAFIDVIWRF
>NZ_CP053929.1|WP_102595392.1|5762805_5764395_-|right-handed-parallel-beta-helix-repeat-containing-protein
MNSPKRGSLTLLAGAMLLASSAAFATAEPVAPAQKGQPATIAKGLQQAKTYTVNSAPTEPLELAAPKLPDTSGYTAEAIAAKVVRTKAGKISVRRMMQENALKDFIGGDNKMAEWVVRQHGIPQAIFVDDGYMNLKDLAKKLPKQYFSETSPGVFLAKLPIVVGEKGILEIDKQTQELRLSQESGSFLVNDGQLFVRDTKITGWSEKANGPAAFKSPKEFRPFLLSWGGTQTYIANSKIASFGYANSKSYGVSISQYTPNMAKVLKRPEPTGWIVGSEFSDMWYGFYCYETRDFVVKGNTYKDNIVYGIDPHDRSHGLIIADNTVFGTKKKHGIIISREVNDSFIFNNRSYDNKLSGMVIDRNSVNNVIAYNEIYKNHTDGITLYESADNLLWGNKVISNRRHGIRIRNSVNIRLYENLAMANGLTGVYGHIKDLSDTDRDIKLDPFDAQVSLIIVGGELAGNGSGPLSIDSPLSVELYRVSMLAPTKSSGISFNGILGERQDEILDLLVRQQKAVLIDPVERQTEMQD
>NZ_CP053929.1|WP_010463122.1|5761334_5762795_-|alginate-O-acetyltransferase
MHPHLIKLLSLSALTAGILAASAGVRADEAASKVSPPSFSAEPCCNLCPEAHDAKNYTTRYQQNFTTLVQAQGDWLFRTQEDLRTEFDTTPAGYKRMKELHDAFKSKGVELVIVYQPTRGLVNRNKLNPEEKAKYDFDKALKNYKTMLGRFAAMGYVVPDLSPLTNESLPDTLPAHDFYFRGDQHWTPYGAQRTAKIVGEKIKQLPEFADIPKREFESHKSGRMGKTGTLHNMAGQLCGTSYAIQYMDQFTTEPKGEAADGDLFSDSGNPEITLVGTSHSGKNYNFAGFLEEAIGADILNVAFPGGGLEGSMLQYLGSEEFQTKPPKILIWEFSPLYRLDQETIYRQMMALLDNGCEGKDAQMTGSTTLKPGKNELMVNSKNLNLQNGSHQVDIRFADPSVKTLQATLWYMNGRHEDIKIEKPETSDTDGRFAFELRTDEDWATQNLLAVEIQGPEAGATPQKVEAKICKRNVFPGAGQRTAQAGQ
>NZ_CP053929.1|WP_010463124.1|5760189_5761323_-|mannuronate-specific-alginate-lyase
MTCMQTRTLKKLLAPSLLTLAMFAGATQAAAPLRPPQGYFAPIEKVKTGDKSEGCDAMPTPYTGSLQFRSKYEGSDKARSTLNEASEKAFRDTTADITKMERGTSKRVMQYMRDGRPEQLECTLNWLTAWAKSDALMSKDFNHTGKSMRKWALGSMASAYIRLKFSDSQPLANHQQESQLIEAWFSKMADQVVSDWDNLPLEKTNNHSYWSAWSVMATSIATNRRDLFDWAVKEYKVGANQIDAQGFLPNELKRQQRALAYHNYALPPLAMIASFAQVNGVDLRQENNGALKRLGDRVLSGVKDPDEFEKKNGKEQDMTDLKVDSKFAWLEPFCTLYTCSPDVLEKKHEMQPFKTFRLGGDLTKVYDPANEKGKKGS
>NZ_CP053929.1|WP_077748261.1|5758428_5759994_-|MBOAT-family-protein
MVFSSNVFLFLFLPIFLGMYYLSGIRYRNLLLLLASYVFYAWWRVDFLALFAAVTLWNYWIGLKVGAAGVRTKPAQRWLLLGVAVDLCILGYFKYANFGVDSINAMMTSVGLSPFILTHVLLPIGISFYIFESISYIIDVYRGDTPATRNLIDFAAFVAIFPHLIAGPVLRFRDLADQFNNRTHTLDKFSEGATRFMQGFIKKVFIADTLAVVADHCFALQNPTTGDAWLGALAYTAQLYFDFSGYSDMAIGLGLMMGFRFMENFKQPYISQSITEFWRRWHISLSTWLRDYLYITLGGNRKGTLMTYRNLFLTMLLGGLWHGANITYIIWGAWHGMWLAIEKALGLNTSPRSINPIRWALTFLLVVMGWVIFRSENLHVAGRMYGAMFSFGEWSLSELNAASLTGLQVATLVVAYMTLAFFGIRDFYSNLPPEKTKPVVNVEADGPAAATPGMIKAVPGDNPTSIHEPGYTVGVEATVQPAYWTADWSRYVMRTLVLVLFIASIFKLSAQSFSPFLYFQF
>NZ_CP053929.1|WP_010463127.1|5757241_5758417_-|alginate-O-acetyltransferase
MTRSLRIFYIALFMVTLLVLGLWSTRSFFGFSTNADATVLNGRWAKAVETHYDEEFPIKRLGTNLWAALDFKLFNEGRPGVVLGRDQWLYSDEEFNPIVNEELNLQGNYALVEGVRQELKAKGVKLVMAIVPAKTRLYPEHLGAVKPSSIHANLYEDFHARVAANKIIAPDLFGPMLKAKLDGEQVFLRTDTHWTPEGAQIAAETLAKTIAEKTPLSGEPQRFVTEPAEKVTHKGDLRLFLPLDPLFENLMPKTEPLQKRNTVVAQDQPAGDDALFANTEVPVALIGTSYSANPNWNFVGALKQALNSDVVNYAEDGHGPILPMLSYLKSDAFKNSPPQVLIWEFPERYLPVNNEIGDADPQWVAELKEAGARQQNVAANTKSETPDRAQN
>NZ_CP053929.1|WP_042932354.1|5756570_5757224_-|alginate-O-acetyltransferase-AlgF
MTFTTTPRRLAKTFALVAGMSVLSMSAFAGDAALYGPTAPKGSSFVRVYNAGNAEVSATVGSTNLAEVAPLSSTDFSFMPGGDYSAKVGSQTLPVKLAGDHYYTLVNNASGAPQLIEEPPFKNKQKSLVRVQNLSDKALTLKTADGKTEVVPSVAAKGRGEREINPVKVSLALYDGATKVGDVKPVALERGEAAVLYVTGKGSSLSPVWVKRPVSTR
>NZ_CP053929.1|WP_010463110.1|5770236_5771553_-|nucleotide-sugar-dehydrogenase
MRISIFGLGYVGAVCAGCLSARGHDVVGVDVAKDKIDMINAGRSPIVEPGLGELLKKGIETGKLRGTTNFAEAIRDTDLSMICVGTPSKKNGDLELNYIEAVCREIGFVLRDKTTRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIADYDLPPMTVIGEFDKASGDVLQSLYEELDAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREVMEVVCQDKTLNLSQYYMRPGFAFGGSCLPKDVRALTYRAGSLDVEAPLLNSLMRSNESQVQNAFDIVSSHDKRKVALLGLSFKAGTDDLRESPLVDLAEMLIGKGYDLSIYDSNVEYARVHGANKDYIESKIPHVSSLLNADFDDVIANSDVIILGNRDEKFRALAQNAPHGKQVVDLVGFMSKATSVSGRTEGICW
>NZ_CP053929.1|WP_010463107.1|5772361_5773141_-|peroxide-stress-protein-YaaA
MLMVISPAKTLDYETPPATQRFTQPQYLDHSQELIMQLRDLTPAQISELMHVSDKIGGLNAARFGSWTPAFTPENAKQALLAFKGDVYTGLNAQTFSEADFDYAQQHLRMLSGLYGLLRPLDLMQPYRLEMGTKLANARGKDLYAFWGTRISEWLNEALADQGDDVLLNLASNEYFSAVKRSALNARIINTDFKDLKNGQYKIISFYAKKARGMMSRFVIEERVNDPADLKNFDVQGYRYSAEQSKPDHLVFLRDHAPE
>NZ_CP053929.1|WP_042932353.1|5773406_5774531_+|polysaccharide-deacetylase-family-protein
MRIVFLLSAWLLSFGAMAAPGDVATLDRSTWPEKLSSPTLFDVASRAEILMFSRVLLASESLDEASLAQRLGLRKINLEAVNNLRQRLWQRLLTNYNFAQQSCDQDASFCFLVEDMDTLRQQAAKFQVSDDSYYIKWSEPSRLFHAQYLDEQLRKAALFPQSSSEVDRFGDYERNGEEMHDRLFLLTFDSAANITPDNTGWVTEYLRKSNMSGTFFVLGKDIQARLAERSVASLQATYSTQCIGVQGWEFRSHSHWQDWQDSVRRSVELVKSKLPENYVPLFRPPDGQRRSDAEGFFKAQGLQVALWDIDAQDGAGKLKGNPSAQRVLTLMLLWRHGVINFNVKQDAVKTAMPWLITQTAQSGIGWEDCQDAFR
>NZ_CP053929.1|WP_145306896.1|5774878_5776273_+|PhoH-family-protein
MDDHGRSSSSNQPILYVLDTNVLIHDPNALLNFEEHHVAIPMTVLEELDKLKSGHHSVAAECRQAIRLIDKTLGDASPEDVELGVPIQRGKSGPKGLLSILMSKRAEPNIILPEHLNDNIIINQLIDLHAREPKLPVVLVTKDINMRLKARACGIAAEDYSTDQLVDDVSLLPNGYHNMDGSFWDRVRNVETRQDHGRTWHQVQLIDNLPAVHINEFIIDEQGFVGWIKEIEEDRLLILDLHQEPLLHQEAWGLKPRDIYQSLALYALLDPDIHLVNLSGAAGSGKTILALAAAIEQTMVSKRYRRIIATRSVQGLDQEIGFLPGTEAEKMEPWLGAITDNLEALHMDDENTHGSVDYILSKVPLQFKSLNYIRGRSFQQSLILIDECQNLTPHQMKTIITRAGAGSKVVCLGNLAQIDTPYLSATSSGLTYLTERFKDFPNGVHITLQGVPRSILAEYAETHL
>NZ_CP053929.1|WP_059406245.1|5776511_5776985_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MLTHLDSQGRANMVDVTEKAVTFREATAQALVRMLPETLQMIVSGGHPKGDVFAVARIAGIQAAKKTSDLIPLCHPLMLTGVKVELSAEGDDTVRIVARCKLSGQTGVEMEALTAASVAALTIYDMCKAVDRGMTIESVRLLEKLGGKSGHFQADQP
>NZ_CP053929.1|WP_010463101.1|5776981_5777224_+|molybdopterin-converting-factor-subunit-1
MNVTVKFFARYREALGVDSIKVEGDFATVDDVRALLAQRDGAEVLSEQNLMCARNEDLCQLDEPVTDGDEVAFFPTVTGG
>NZ_CP053929.1|WP_102593963.1|5777225_5777678_+|molybdopterin-synthase-catalytic-subunit-MoaE
MAIRVQSTAFDPGAEVNAMHAANVGVGAVVSFVGYVRDFNDGLDVSGMFLEHYPGMTEKALGKIALEAEQRWPLLKLEVLHRIGALEPGEPIVFVGAASAHRQAAFDACAFVMDYLKTRAPFWKKENTRDGPRWVEGRDSDHAAADRWKQ
>NZ_CP053929.1|WP_010463099.1|5777985_5778762_+|ABC-transporter-substrate-binding-protein
MKKFPLITGLALSLFACSTLFAAEKTLRIGIEAAYPPFASKTDKGEIVGFDYDIGNALCAQMKVKCVWVEGEFDGLIPSLKVKKIDMALSSMTINEDRKKSVDFSHKYYFTSSRLVMKEGASVDDQYASLKGKTVGVQRATTTDRYATEVFEPKGINVKRYGNNEEIYMDLAAGRLDAIFADTIPLSDFLAMPRGKGYAFVGPELKDPKYVGEGAGIAVRKGNTELVSQLNTAIDGIRASGEYQKISEKYFKADIYGD
>NZ_CP053929.1|WP_010463098.1|5778837_5779464_-|transcriptional-regulator
MNAPEKDPAMDNYRAIADAIATLFFPHAEVVLHDLRTQKIDYIANNLSKREVGDDAALEDMLSDDVSERNIGPYEKLNWDGQKIRSLSSVLRDSDGHPLAVLCINLNISLFENAKAALDLFLSPSKLIPQPDSLFRDDWQERINTFLHAWLRERQLSLNLLTRDHKRELVLALHAEGAFKGKSASNYVANVLNMGRATVYKHLKELKG
>NZ_CP053929.1|WP_154911848.1|5779554_5780682_-|FAD-dependent-oxidoreductase
MSQADFIIIGGGIAGASTGFWLSQHARVIVLERESHPAYHSTGRSAALYTAAYGTPQVRALTQASREFFDAPPVGFCEHPLLTPRGEMTVDFTGDPAELNNQYLSAKATVAEMQLLSADEACARLPILRREKVHGAIYDPTASDIDTDALHQGYLRGIRRNKGEVHTDSEVLSLTRNAEGMWQVQTNNQTFSAPIIINAAGAWADKIGELAGAKSLGLQPKRRAAFIFAGPEGVDIHHWPMLVSLDESFYMKPDAGMFLGSPANADPVEPHDVQPEELDIAMGIYQIEEATTLTIRRPTRTWAGLRSFVTDGDLICGFDQHVPGLFWVAAQGGYGIQTSPAMGQASAALVRGEALPEQLSRFGLDAEMLSPARLG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP053929_1	1.1\|3024760\|37\|NZ_CP053929\|CRISPRCasFinder	3024760-3024796	37	NZ_CP053929.1	5295610-5295646	2	0.946

1. spacer 1.1|3024760|37|NZ_CP053929|CRISPRCasFinder matches to position: 5295610-5295646, mismatch: 2, identity: 0.946

agcaggctcgctcctacagtggaatgggtgtacctgc	CRISPR spacer
agcaggctcactcctacagtggaatgtgtgtacctgc	Protospacer
*********.**************** **********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

212005 : 218286

uncultured_Caudovirales_phage(83.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010458913.1\|212005_213286_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-98	53.3
WP_145309611.1\|213286_214681_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_154911561.1\|215906_216908_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	6.7e-164	84.8
WP_010458921.1\|216904_217240_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	8.0e-45	79.3
WP_172790609.1\|217236_217530_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	8.9e-32	72.7
WP_010458926.1\|217529_217892_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.3e-40	69.2
WP_172792520.1\|217893_218286_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.7e-54	81.4

DBSCAN-SWA_2

3998659 : 4055242

Lake_Baikal_phage(16.67%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010467060.1\|3998659_3999166_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_172791844.1\|3999505_4000393_+	acyltransferase	NA	NA	NA	NA
WP_010467055.1\|4001269_4001482_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.2e-15	64.1
WP_083375609.1\|4001950_4002340_+	DUF3757 domain-containing protein	NA	NA	NA	NA
WP_077747277.1\|4002405_4003605_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.3e-09	26.6
WP_172791845.1\|4003810_4004668_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_077747276.1\|4004815_4005448_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_172791846.1\|4005597_4008615_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_010467039.1\|4008611_4008941_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_007947735.1\|4008955_4010206_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_010467035.1\|4010229_4011483_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	9.2e-102	53.2
WP_172791847.1\|4011767_4012484_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_010467030.1\|4012617_4013658_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_010467027.1\|4014845_4015946_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_010467026.1\|4016241_4017537_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_172791848.1\|4017644_4018889_-	metallophosphoesterase	NA	NA	NA	NA
WP_172791849.1\|4018916_4020785_-	hypothetical protein	NA	NA	NA	NA
WP_172791850.1\|4020944_4024397_-	GMC family oxidoreductase N-terminal domain-containing protein	NA	NA	NA	NA
WP_010467022.1\|4025424_4025991_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_172791851.1\|4026136_4026907_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_172791852.1\|4026922_4028143_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_172791853.1\|4028142_4030092_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_172791854.1\|4030203_4032264_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_008033249.1\|4032279_4032810_-	hypothetical protein	NA	NA	NA	NA
WP_007907542.1\|4032889_4033867_-	membrane dipeptidase	NA	NA	NA	NA
WP_010467005.1\|4034103_4034505_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_027926650.1\|4034778_4035195_+	DUF3010 family protein	NA	NA	NA	NA
WP_010467001.1\|4035334_4036294_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_010467000.1\|4036503_4037448_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_008151915.1\|4037523_4038411_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_172791855.1\|4038553_4039519_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_172791856.1\|4039653_4040130_+	thioesterase family protein	NA	NA	NA	NA
WP_102593729.1\|4040144_4041305_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_172791857.1\|4041676_4041940_+	hypothetical protein	NA	NA	NA	NA
WP_010466992.1\|4042071_4043175_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_172791858.1\|4043786_4045163_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_010466989.1\|4045599_4046550_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010466987.1\|4046627_4047473_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010466986.1\|4047469_4048648_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-25	37.6
WP_172791859.1\|4048902_4050909_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.0e-19	26.5
WP_010466984.1\|4051230_4051824_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_010466983.1\|4051934_4053407_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_077747261.1\|4053538_4055242_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	8.5e-50	29.4

DBSCAN-SWA_3

5917130 : 5987051

Pseudomonas_phage(57.14%)

plate,tail,tRNA,lysis,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010462854.1\|5917130_5917943_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	3.8e-08	33.0
WP_010462851.1\|5918031_5918436_-	SufE family protein	NA	NA	NA	NA
WP_169856273.1\|5918432_5919638_-	aminotransferase class V-fold PLP-dependent enzyme	Q2XUY6	environmental_halophage	3.2e-67	35.6
WP_172792329.1\|5919786_5920821_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_077748326.1\|5920854_5921247_-	ArsC family reductase	NA	NA	NA	NA
WP_172792330.1\|5921428_5923072_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_172792331.1\|5923095_5923839_-	peptidase M12	NA	NA	NA	NA
WP_010462840.1\|5924208_5925408_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_010462836.1\|5928282_5929065_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_007907989.1\|5929438_5930176_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_010462832.1\|5930366_5931230_+	elongation factor Ts	NA	NA	NA	NA
WP_003172271.1\|5931439_5932183_+	UMP kinase	NA	NA	NA	NA
WP_010462824.1\|5932179_5932737_+	ribosome recycling factor	NA	NA	NA	NA
WP_010462822.1\|5932750_5933506_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.1e-17	38.1
WP_010462821.1\|5933505_5934312_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_010462818.1\|5934308_5935499_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_010462816.1\|5935552_5936905_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_077748329.1\|5936979_5939355_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_010462812.1\|5939400_5939904_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_077748330.1\|5939907_5940963_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_008154051.1\|5941071_5941512_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_010462807.1\|5941508_5942285_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_145307565.1\|5942287_5943418_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_010462803.1\|5943429_5944056_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	5.7e-28	39.7
WP_172792332.1\|5944132_5947654_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	1.1e-197	36.4
WP_010462799.1\|5947793_5948741_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_010462795.1\|5950476_5952108_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.8e-158	53.3
WP_010462794.1\|5952113_5952959_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.1e-49	42.8
WP_010462792.1\|5953115_5954405_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.8e-138	59.7
WP_008028992.1\|5954576_5954855_+	cell division protein FtsB	NA	NA	NA	NA
WP_010462788.1\|5954851_5955559_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_172792333.1\|5955695_5956592_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010462785.1\|5956699_5957812_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.3e-32	28.5
WP_010462780.1\|5958708_5959182_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_077748334.1\|5959178_5960237_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_077748335.1\|5960224_5960974_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.0e-67	52.6
WP_010462773.1\|5961015_5961651_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.1e-41	52.3
WP_083374911.1\|5961862_5962720_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.5e-06	33.3
WP_010462770.1\|5962825_5963833_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_008154011.1\|5964307_5964631_-	ferredoxin family protein	NA	NA	NA	NA
WP_172792622.1\|5964773_5967341_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.2e-26	24.0
WP_077748338.1\|5967552_5968287_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.6e-130	94.3
WP_010462762.1\|5968783_5969131_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.1e-52	89.5
WP_172792334.1\|5969262_5969847_+	hypothetical protein	B5TK65	Pseudomonas_phage	8.4e-90	79.9
WP_010462758.1\|5969843_5970026_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.4e-27	98.3
WP_010462756.1\|5970025_5971522_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	2.3e-264	93.4
WP_109628232.1\|5971602_5971950_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	1.0e-58	95.7
WP_172792335.1\|5971946_5972243_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	8.1e-41	89.8
WP_172792336.1\|5972373_5974251_+	hypothetical protein	B5TK70	Pseudomonas_phage	5.3e-29	56.6
WP_172792337.1\|5974237_5975473_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	2.0e-157	69.9
WP_010462746.1\|5975475_5976519_+	hypothetical protein	B5TK72	Pseudomonas_phage	1.1e-153	78.3
WP_010462745.1\|5976593_5977103_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.1e-80	91.1
WP_172792338.1\|5977102_5977501_+	phage GP46 family protein	B5TK74	Pseudomonas_phage	2.5e-69	95.5
WP_010462739.1\|5978520_5979120_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.1e-105	92.0
WP_010462737.1\|5979131_5980283_+	hypothetical protein	B5TK77	Pseudomonas_phage	2.8e-161	70.8
WP_145307551.1\|5980279_5980795_+\|tail	phage tail protein	B5TK78	Pseudomonas_phage	6.5e-54	66.7
WP_145307549.1\|5980920_5982015_+\|tail	phage tail protein	B5TK79	Pseudomonas_phage	1.1e-164	78.0
WP_145307545.1\|5982621_5983833_+	carbohydrate-binding protein CenC	B5TK77	Pseudomonas_phage	6.5e-20	72.5
WP_172792339.1\|5983844_5984249_+\|tail	phage tail protein	NA	NA	NA	NA
WP_172792340.1\|5984252_5984816_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	1.7e-84	83.3
WP_172792341.1\|5984797_5985334_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	2.4e-67	78.1
WP_010462721.1\|5985414_5985915_+	CinA family protein	B5TK85	Pseudomonas_phage	3.6e-73	86.1
WP_007907270.1\|5985998_5987051_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.5e-110	60.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053929

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection