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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP053690 Arthrobacter citreus strain NEB 577 plasmid pAciIRM, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP053688 Arthrobacter citreus strain NEB 577 chromosome, complete genome 3 crisprs cas3,DinG,csa3,RT,DEDDh,WYL 2 2 10 0
NZ_CP053689 Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence 0 crisprs RT,csa3 0 0 1 0

Results visualization

1. NZ_CP053688
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053688_1 881264-883499 Orphan NA
28 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053688_2 1046822-1046896 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053688_3 3607983-3608082 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP053688_1 1.12|882222|41|NZ_CP053688|CRT 882222-882262 41 NZ_CP053688.1 881205-881245 1 0.976
NZ_CP053688_1 1.12|882222|41|NZ_CP053688|CRT 882222-882262 41 NZ_CP053688.1 881061-881101 2 0.951
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP053688.1 4886964-4886995 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP053688.1 4886973-4887004 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP053688.1 4886982-4887013 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP053688.1 4886991-4887022 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP053688.1 4887000-4887031 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP053688.1 4887009-4887040 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP053688.1 4887018-4887049 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP053688.1 4887027-4887058 2 0.938

1. spacer 1.12|882222|41|NZ_CP053688|CRT matches to position: 881205-881245, mismatch: 1, identity: 0.976

cggatcaactggagcaaccggcccgacgggaataacaggct	CRISPR spacer
cggatcaactggagcaaccggcccgacaggaataacaggct	Protospacer
***************************.*************

2. spacer 1.12|882222|41|NZ_CP053688|CRT matches to position: 881061-881101, mismatch: 2, identity: 0.951

cggatcaactggagcaaccggcccgacgggaataacaggct	CRISPR spacer
cggatcaactggaacaaccggcccgacaggaataacaggct	Protospacer
*************.*************.*************

3. spacer 1.28|883446|32|NZ_CP053688|CRT matches to position: 4886964-4886995, mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

4. spacer 1.28|883446|32|NZ_CP053688|CRT matches to position: 4886973-4887004, mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

5. spacer 1.28|883446|32|NZ_CP053688|CRT matches to position: 4886982-4887013, mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

6. spacer 1.28|883446|32|NZ_CP053688|CRT matches to position: 4886991-4887022, mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

7. spacer 1.28|883446|32|NZ_CP053688|CRT matches to position: 4887000-4887031, mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

8. spacer 1.28|883446|32|NZ_CP053688|CRT matches to position: 4887009-4887040, mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

9. spacer 1.28|883446|32|NZ_CP053688|CRT matches to position: 4887018-4887049, mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

10. spacer 1.28|883446|32|NZ_CP053688|CRT matches to position: 4887027-4887058, mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NC_007103 Bacillus cereus E33L plasmid pE33L466, complete sequence 322-353 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009967 Bacillus cereus E33L plasmid pBCO_1, complete sequence 321820-321851 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68776-68807 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68785-68816 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68794-68825 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68803-68834 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68812-68843 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68821-68852 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68830-68861 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68839-68870 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68848-68879 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68857-68888 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 90216-90247 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 90225-90256 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 90234-90265 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 90243-90274 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 90252-90283 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 90261-90292 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 90270-90301 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130587-130618 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130596-130627 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130659-130690 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130668-130699 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130677-130708 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130686-130717 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130695-130726 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130704-130735 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130713-130744 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130722-130753 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130767-130798 2 0.938
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NC_007103 Bacillus cereus E33L plasmid pE33L466, complete sequence 97-128 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NC_007103 Bacillus cereus E33L plasmid pE33L466, complete sequence 169-200 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NC_007103 Bacillus cereus E33L plasmid pE33L466, complete sequence 196-227 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NC_007103 Bacillus cereus E33L plasmid pE33L466, complete sequence 268-299 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NC_007103 Bacillus cereus E33L plasmid pE33L466, complete sequence 295-326 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NC_007103 Bacillus cereus E33L plasmid pE33L466, complete sequence 358-389 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009967 Bacillus cereus E33L plasmid pBCO_1, complete sequence 321784-321815 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009967 Bacillus cereus E33L plasmid pBCO_1, complete sequence 321847-321878 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009967 Bacillus cereus E33L plasmid pBCO_1, complete sequence 321919-321950 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 130578-130609 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP012101 Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence 131075-131106 3 0.906
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68866-68897 4 0.875
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 MN693798 Marine virus AFVG_250M119, complete genome 11463-11494 4 0.875
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 68929-68960 5 0.844
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 AP014420 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C167, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces 10322-10353 5 0.844
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 73996-74027 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 CP037991 Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence 472792-472823 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NC_010180 Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence 116706-116737 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 MN694697 Marine virus AFVG_250M792, complete genome 19470-19501 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 MN693590 Marine virus AFVG_25M199, complete genome 14301-14332 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 KP793114 Lactococcus phage 936 group phage Phi17, complete genome 8744-8775 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 KP793132 Lactococcus phage 936 group phage PhiM1127, complete genome 9472-9503 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 KP793135 Lactococcus phage 936 group phage Phi.16, complete genome 9193-9224 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 MN693816 Marine virus AFVG_250M124, complete genome 30608-30639 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 KP793127 Lactococcus phage 936 group phage Phi40, complete genome 9293-9324 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NC_049447 Lactococcus phage MV10L, complete genome 8709-8740 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 KP793120 Lactococcus phage 936 group phage PhiL.18, complete genome 8719-8750 7 0.781
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 KF437907 Phormidium phage MIS-PhV1A, complete genome 8767-8798 8 0.75
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP034838 Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence 87196-87227 8 0.75
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP034839 Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence 87196-87227 8 0.75
NZ_CP053688_2 2.1|1046845|29|NZ_CP053688|CRISPRCasFinder 1046845-1046873 29 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 260054-260082 8 0.724
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP023451 Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p2, complete sequence 26577-26608 9 0.719
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP015989 Sphingobium sp. EP60837 plasmid pEP2, complete sequence 129977-130008 9 0.719
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 KX856662 Klebsiella phage KP-Rio/2015, complete genome 15781-15812 9 0.719
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 90207-90238 10 0.688
NZ_CP053688_1 1.28|883446|32|NZ_CP053688|CRT 883446-883477 32 MH649200 Myoviridae sp. isolate ctce54, complete genome 3493-3524 10 0.688

1. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagtaacaggag	Protospacer
.******************** **********

2. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagtaacaggag	Protospacer
.******************** **********

3. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

4. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

5. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

6. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

7. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

8. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

9. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

10. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

11. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

12. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

13. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

14. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

15. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

16. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

17. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

18. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

19. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

20. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

21. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

22. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

23. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

24. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

25. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

26. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

27. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

28. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

29. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggag	Protospacer
********************* *.********

30. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.938

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacgggagtaacaggag	Protospacer
******************.** **********

31. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagtaacgggag	Protospacer
.******************** *****.****

32. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagtaacgggag	Protospacer
.******************** *****.****

33. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagtaacgggag	Protospacer
.******************** *****.****

34. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagtaacgggag	Protospacer
.******************** *****.****

35. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagtaacgggag	Protospacer
.******************** *****.****

36. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagcaacaggag	Protospacer
.******************** *.********

37. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagcaacaggag	Protospacer
.******************** *.********

38. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagtaacgggag	Protospacer
.******************** *****.****

39. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagtaacgggag	Protospacer
.******************** *****.****

40. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagcaacaggag	Protospacer
.******************** *.********

41. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 3, identity: 0.906

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacaggac	Protospacer
********************* *.******* 

42. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.875

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagcaacaggagcaacagggc	Protospacer
********************* *.******. 

43. spacer 1.28|883446|32|NZ_CP053688|CRT matches to MN693798 (Marine virus AFVG_250M119, complete genome) position: , mismatch: 4, identity: 0.875

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
cgtagcaacaggagcaacaggagcaacaggag	Protospacer
 * ****************** *.********

44. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.844

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggagcaacagggc	Protospacer
.******************** *.******. 

45. spacer 1.28|883446|32|NZ_CP053688|CRT matches to AP014420 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C167, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 5, identity: 0.844

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
gggagcaacaggagcaacaggtggatcagacg	Protospacer
.********************** * ***. *

46. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagaaacaggagcgacaggtgtacaggtaa	Protospacer
***** *********.*********  .* *.

47. spacer 1.28|883446|32|NZ_CP053688|CRT matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggtctaacaggagcaacgggagtaacaggtc	Protospacer
***  .************.** ********  

48. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
cggtccaacgggagcaacaggtataacaggcc	Protospacer
 **  ****.************.*******  

49. spacer 1.28|883446|32|NZ_CP053688|CRT matches to MN694697 (Marine virus AFVG_250M792, complete genome) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagctacaggtgatgtagatg	Protospacer
*************** *******  ..**. *

50. spacer 1.28|883446|32|NZ_CP053688|CRT matches to MN693590 (Marine virus AFVG_25M199, complete genome) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggcgcaacaggcgcaacaggtgcggctggat	Protospacer
*** ******** **********...* *** 

51. spacer 1.28|883446|32|NZ_CP053688|CRT matches to KP793114 (Lactococcus phage 936 group phage Phi17, complete genome) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
agaaataacaggagctacaagtgtaacagcac	Protospacer
**.*..********* ***.********* * 

52. spacer 1.28|883446|32|NZ_CP053688|CRT matches to KP793132 (Lactococcus phage 936 group phage PhiM1127, complete genome) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
agaaataacaggagctacaagtgtaacagcac	Protospacer
**.*..********* ***.********* * 

53. spacer 1.28|883446|32|NZ_CP053688|CRT matches to KP793135 (Lactococcus phage 936 group phage Phi.16, complete genome) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
agaaataacaggagctacaagtgtaacagcac	Protospacer
**.*..********* ***.********* * 

54. spacer 1.28|883446|32|NZ_CP053688|CRT matches to MN693816 (Marine virus AFVG_250M124, complete genome) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcgacaggagcaactggtgctgctggaa	Protospacer
******.*********** ****. .* ***.

55. spacer 1.28|883446|32|NZ_CP053688|CRT matches to KP793127 (Lactococcus phage 936 group phage Phi40, complete genome) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
agaaataacaggagctacaagtgtaacagcac	Protospacer
**.*..********* ***.********* * 

56. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NC_049447 (Lactococcus phage MV10L, complete genome) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
agaaataacaggagctacaagtgtaacagcac	Protospacer
**.*..********* ***.********* * 

57. spacer 1.28|883446|32|NZ_CP053688|CRT matches to KP793120 (Lactococcus phage 936 group phage PhiL.18, complete genome) position: , mismatch: 7, identity: 0.781

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
agaaataacaggagctacaagtgtaacagcac	Protospacer
**.*..********* ***.********* * 

58. spacer 1.28|883446|32|NZ_CP053688|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 8, identity: 0.75

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcaacaggagctacgggtgctgttggtg	Protospacer
*************** **.****. .. ** *

59. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 8, identity: 0.75

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggaacaacaggcgcaacaggtggattctgcg	Protospacer
****.******* ********** * .  * *

60. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 8, identity: 0.75

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggaacaacaggcgcaacaggtggattctgcg	Protospacer
****.******* ********** * .  * *

61. spacer 2.1|1046845|29|NZ_CP053688|CRISPRCasFinder matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.724

gcgaaatctaaaaaagtgttactcataaa	CRISPR spacer
aaagaggataaaaaagtattactcataaa	Protospacer
. ..*.  *********.***********

62. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP023451 (Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
ccgagcaacaggagcaagaggagtatcccgca	Protospacer
  *************** *** *** *  * .

63. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP015989 (Sphingobium sp. EP60837 plasmid pEP2, complete sequence) position: , mismatch: 9, identity: 0.719

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
ccgagcaacaggagcaagaggagtatcccgca	Protospacer
  *************** *** *** *  * .

64. spacer 1.28|883446|32|NZ_CP053688|CRT matches to KX856662 (Klebsiella phage KP-Rio/2015, complete genome) position: , mismatch: 9, identity: 0.719

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
aggagcagcaggagcagcaggtgcctgcatag	Protospacer
*******.********.******.    . **

65. spacer 1.28|883446|32|NZ_CP053688|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

---------aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
acctgctggaggagcaacaggagcaacaggag---------	Protospacer
         ********************* *         

66. spacer 1.28|883446|32|NZ_CP053688|CRT matches to MH649200 (Myoviridae sp. isolate ctce54, complete genome) position: , mismatch: 10, identity: 0.688

aggagcaacaggagcaacaggtgtaacaggag	CRISPR spacer
attttcaacagaagcaacaggtgttacataca	Protospacer
*    ******.************ *** . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 568900 : 620091 55 Paenibacillus_phage(21.74%) integrase,coat,head,capsid,holin,portal,tRNA,tail,protease,terminase attL 585174:585190|attR 594528:594544
DBSCAN-SWA_2 861251 : 868045 10 Bacillus_phage(50.0%) integrase attL 858048:858062|attR 868373:868387
DBSCAN-SWA_3 1412961 : 1470058 61 Bacillus_phage(34.62%) head,capsid,holin,portal,tRNA,tail,protease,terminase NA
DBSCAN-SWA_4 1473884 : 1488698 19 Bacillus_phage(26.67%) integrase attL 1477734:1477748|attR 1491847:1491861
DBSCAN-SWA_5 1626353 : 1685387 60 Bacillus_phage(40.0%) transposase,protease,tRNA,integrase attL 1647228:1647245|attR 1664740:1664757
DBSCAN-SWA_6 2626066 : 2635479 11 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_7 3999491 : 4036428 49 Paenibacillus_phage(20.83%) integrase,head,capsid,portal,tRNA,tail,protease,terminase attL 4007652:4007669|attR 4031656:4031673
DBSCAN-SWA_8 4042837 : 4056415 16 Bacillus_phage(22.22%) NA NA
DBSCAN-SWA_9 4101465 : 4109808 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_10 4325007 : 4332909 7 Escherichia_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP053689
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 61626 : 134022 60 Bacillus_phage(36.36%) transposase,integrase,protease attL 119719:119743|attR 141195:141219
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage