CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029750	Staphylococcus aureus strain Smith plasmid pSS41, complete sequence	0 crisprs	csa3	0	0	1	0
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	8 crisprs	cas3,DEDDh,DinG,csa3,WYL	6	3	10	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19572 : 28483

Staphylococcus_phage(57.14%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000277738.1\|19572_21219_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.0e-289	98.4
WP_000378396.1\|21581_23762_-	cadmium-translocating P-type ATPase CadA	E4ZFI9	Streptococcus_phage	9.3e-251	63.7
WP_000159128.1\|23754_24120_-	winged helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	8.5e-24	47.8
WP_000361064.1\|24357_24735_-	hypothetical protein	NA	NA	NA	NA
WP_001105942.1\|24829_25504_+\|transposase	IS6-like element ISSau6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.3e-113	88.4
WP_001035802.1\|25538_25751_-	hypothetical protein	NA	NA	NA	NA
WP_000633163.1\|26070_26406_+	recombinase family protein	NA	NA	NA	NA
WP_000120605.1\|26466_26781_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4PQT4	Staphylococcus_phage	4.7e-39	73.1
WP_171994842.1\|26777_28070_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	1.0e-188	81.9
WP_111131926.1\|28087_28483_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	2.5e-61	85.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP029751

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029751_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029751_1

1087468-1087554

Orphan

Consensus_repeat	Method
TTGTAAGGTAAAAGAGGGATACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029751_1

>merge|NZ_CP029751|1|1087468-1087554|CRISPRCasFinder
TTGTAAGGTAAAAGAGGGATACTTACGCCGAGCGCAAGCATAAAATCCCCTAACAACTAAAGGTTGTAAGGTAAAAGAGGGATACTT

>NZ_CP029751|1|1|1087468-1087554|CRISPRCasFinder
TTGTAAGGTAAAAGAGGGATACTT	ACGCCGAGCGCAAGCATAAAATCCCCTAACAACTAAAGG
TTGTAAGGTAAAAGAGGGATACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029751.1\|WP_000921976.1\|1085036_1086437_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP029751.1\|WP_000381849.1\|1094191_1095553_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP029751.1\|WP_000238676.1\|1080643_1081210_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
NZ_CP029751.1\|WP_000033477.1\|1086451_1087027_-\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|227065
NZ_CP029751.1\|WP_000030808.1\|1079612_1080641_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP029751.1\|WP_001101927.1\|1082724_1083972_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|237507
NZ_CP029751.1\|WP_000638449.1\|1095549_1096569_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
NZ_CP029751.1\|WP_000273250.1\|1084237_1085044_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP029751.1\|WP_000032754.1\|1075967_1078157_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_CP029751.1\|WP_000064214.1\|1087610_1087745_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000709282.1\|1081224_1082703_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP029751.1\|WP_000666796.1\|1075303_1075975_+\|phosphoribosylformylglycinamidine-synthase-I	unknown	unknown	gnl\|CDD\|235140
NZ_CP029751.1\|WP_000009069.1\|1087896_1089192_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000437472.1\|1091538_1091805_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
NZ_CP029751.1\|WP_000483713.1\|1078135_1079620_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
NZ_CP029751.1\|WP_001289618.1\|1093760_1093994_-\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|239274
NZ_CP029751.1\|WP_000514290.1\|1096701_1097364_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP029751.1\|WP_000040055.1\|1091807_1093526_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP029751.1\|WP_000505962.1\|1090842_1091385_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368297
NZ_CP029751.1\|WP_000685083.1\|1089616_1090789_+\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017

Protein	Function_ID	Function_description	E-value
NZ_CP029751.1\|WP_000921976.1\|1085036_1086437_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	5.57057e-64
NZ_CP029751.1\|WP_000381849.1\|1094191_1095553_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.48829e-165
NZ_CP029751.1\|WP_000238676.1\|1080643_1081210_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	3.47897e-91
NZ_CP029751.1\|WP_000033477.1\|1086451_1087027_-\|ECF-transporter-S-component	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	4.34592e-70
NZ_CP029751.1\|WP_000030808.1\|1079612_1080641_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP029751.1\|WP_001101927.1\|1082724_1083972_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|237507	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP029751.1\|WP_000638449.1\|1095549_1096569_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	3.29539e-76
NZ_CP029751.1\|WP_000273250.1\|1084237_1085044_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	8.74432e-29
NZ_CP029751.1\|WP_000032754.1\|1075967_1078157_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_CP029751.1\|WP_000709282.1\|1081224_1082703_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP029751.1\|WP_000666796.1\|1075303_1075975_+\|phosphoribosylformylglycinamidine-synthase-I	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	7.05493e-140
NZ_CP029751.1\|WP_000437472.1\|1091538_1091805_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	2.44795e-51
NZ_CP029751.1\|WP_000483713.1\|1078135_1079620_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
NZ_CP029751.1\|WP_001289618.1\|1093760_1093994_-\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	1.21197e-16
NZ_CP029751.1\|WP_000514290.1\|1096701_1097364_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	4.35421e-66
NZ_CP029751.1\|WP_000040055.1\|1091807_1093526_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP029751.1\|WP_000505962.1\|1090842_1091385_+\|hypothetical-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	0.00760449
NZ_CP029751.1\|WP_000685083.1\|1089616_1090789_+\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	1.88919e-145

>NZ_CP029751.1|WP_000033477.1|1086451_1087027_-|ECF-transporter-S-component
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>NZ_CP029751.1|WP_000921976.1|1085036_1086437_-|ABC-transporter-ATP-binding-protein
MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQVPREDMDALIINALNMVNLNVTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQTVVIVEHKVKHIWTHVDRVILMDYNGSIIADERPEIILQKYVHLLSEYGVWHPRAWEFAPSRVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQLIKYQGDVYLENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDETIQLLKLLDLENVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIKLFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
>NZ_CP029751.1|WP_000273250.1|1084237_1085044_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRSYYYNVPFSYKDVIFIIVLIAIITLANYCSITLPITGIDDVRLGRVG
>NZ_CP029751.1|WP_001101927.1|1082724_1083972_+|phosphoribosylamine--glycine-ligase
MNVLVIGAGGREHALAYKLNQSSLVKQVFVIPGNEAMTPIAEVHTEISESDHQGILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKMMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVHDAQRDAYEKVSQIQSDHLFYRHDIANKALQLK
>NZ_CP029751.1|WP_000709282.1|1081224_1082703_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVPVRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKPQHLNELSEQHIDLIDMVVVNLYPFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDSLDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIAGAKQLHGKQLSYNNIKDADATLALVKKFDTPAAVAVKHMNPCGVGIGDTIEQAFQHAYEADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEIDMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPSVKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVELAAQHGIKAIIQPGGSIKDQDSIDMANKHGIAMVVTGTRHFKH
>NZ_CP029751.1|WP_000238676.1|1080643_1081210_+|phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTSLYTDHQNAFCIDRAKKHDIPVYINEPKKFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>NZ_CP029751.1|WP_000030808.1|1079612_1080641_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVEEGQVVIGLASSGIHSNGYSLVRKLINESGIELASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>NZ_CP029751.1|WP_000483713.1|1078135_1079620_+|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>NZ_CP029751.1|WP_000032754.1|1075967_1078157_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYNDEVYADIPVEPLADEAPVYILEGEEKNYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGVLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>NZ_CP029751.1|WP_000666796.1|1075303_1075975_+|phosphoribosylformylglycinamidine-synthase-I
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLAAEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCNDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>NZ_CP029751.1|WP_000064214.1|1087610_1087745_-|hypothetical-protein
MSNENQNKKAAEKAKEVEEKLKDKKEEKTEDINQTKQDIQDTLN
>NZ_CP029751.1|WP_000009069.1|1087896_1089192_+|hypothetical-protein
MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVDTHVHNVWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP
>NZ_CP029751.1|WP_000685083.1|1089616_1090789_+|class-I-SAM-dependent-rRNA-methyltransferase
MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDVFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQEINTAFFVKLFKTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHVLNLFSYTGAFSVIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKITIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
>NZ_CP029751.1|WP_000505962.1|1090842_1091385_+|hypothetical-protein
MGFKNNLTSNLTNKIGNSVFKIENINEKGAMPTTIKELNERRQRAEAIVKRKSLMSSTMSVVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSLGDDVKERVMSAAAIQGSQFIGKRISSAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKIGKDHIQKCENVIKNVM
>NZ_CP029751.1|WP_000437472.1|1091538_1091805_+|phosphocarrier-protein-HPr
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
>NZ_CP029751.1|WP_000040055.1|1091807_1093526_+|phosphoenolpyruvate--protein-phosphotransferase
MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMNGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRLQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIELVNNYVK
>NZ_CP029751.1|WP_001289618.1|1093760_1093994_-|glutaredoxin-like-protein-NrdH
MSEIIVYTQNDCPPCTFVKNYLNEHQIDFEERNINNQQYRNEMIDFDAFSTPFILLNGNPMYHVDLDEINKVLNIQD
>NZ_CP029751.1|WP_000381849.1|1094191_1095553_+|cytochrome-ubiquinol-oxidase-subunit-I
MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
>NZ_CP029751.1|WP_000638449.1|1095549_1096569_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMFMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFAISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
>NZ_CP029751.1|WP_000514290.1|1096701_1097364_+|TrkA-family-potassium-uptake-protein
MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIATR

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Crispr_ID: NZ_CP029751_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029751_2

1245707-1245799

Unclear

Consensus_repeat	Method
TAAGAAACAGTAATCAATAAATTGATAACT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP029751_2

>merge|NZ_CP029751|2|1245707-1245799|CRISPRCasFinder
TAAGAAACAGTAATCAATAAATTGATAACTAATAAGCGGAACGCCTGAGCTAAAGCTCATGCATAAGAAACAGTAATCAATAAATTGATAACT

>NZ_CP029751|2|2|1245707-1245799|CRISPRCasFinder
TAAGAAACAGTAATCAATAAATTGATAACT	AATAAGCGGAACGCCTGAGCTAAAGCTCATGCA
TAAGAAACAGTAATCAATAAATTGATAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029751.1\|WP_000623894.1\|1238274_1239921_+\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|224378
NZ_CP029751.1\|WP_000547901.1\|1236232_1236874_+\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|224480
NZ_CP029751.1\|WP_001151505.1\|1240110_1242171_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP029751.1\|WP_000047351.1\|1243929_1244856_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP029751.1\|WP_000239748.1\|1242950_1243937_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP029751.1\|WP_001548538.1\|1242373_1242946_+\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
NZ_CP029751.1\|WP_000517908.1\|1237254_1237443_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP029751.1\|WP_000268754.1\|1253985_1254261_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NZ_CP029751.1\|WP_000262687.1\|1247115_1250682_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_CP029751.1\|WP_000043237.1\|1246237_1246969_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP029751.1\|WP_000171418.1\|1237885_1238260_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|224221
NZ_CP029751.1\|WP_000167269.1\|1244848_1245583_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NZ_CP029751.1\|WP_000863474.1\|1252276_1253644_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP029751.1\|WP_000164332.1\|1235581_1236226_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP029751.1\|WP_000531320.1\|1251918_1252251_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_CP029751.1\|WP_000007691.1\|1250681_1251932_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP029751.1\|WP_000687335.1\|1254951_1255689_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP029751.1\|WP_001261987.1\|1254448_1254952_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP029751.1\|WP_000426914.1\|1245888_1246122_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP029751.1\|WP_000181404.1\|1255791_1256142_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418

Protein	Function_ID	Function_description	E-value
NZ_CP029751.1\|WP_000623894.1\|1238274_1239921_+\|DAK2-domain-containing-protein	gnl\|CDD\|224378	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only].	0
NZ_CP029751.1\|WP_000547901.1\|1236232_1236874_+\|thiamine-diphosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	6.60157e-82
NZ_CP029751.1\|WP_001151505.1\|1240110_1242171_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP029751.1\|WP_000047351.1\|1243929_1244856_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	2.40972e-135
NZ_CP029751.1\|WP_000239748.1\|1242950_1243937_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	6.1953e-178
NZ_CP029751.1\|WP_001548538.1\|1242373_1242946_+\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	2.37773e-98
NZ_CP029751.1\|WP_000517908.1\|1237254_1237443_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
NZ_CP029751.1\|WP_000268754.1\|1253985_1254261_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
NZ_CP029751.1\|WP_000262687.1\|1247115_1250682_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_CP029751.1\|WP_000043237.1\|1246237_1246969_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	4.78039e-115
NZ_CP029751.1\|WP_000171418.1\|1237885_1238260_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	4.1554e-37
NZ_CP029751.1\|WP_000167269.1\|1244848_1245583_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	3.68137e-140
NZ_CP029751.1\|WP_000863474.1\|1252276_1253644_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP029751.1\|WP_000164332.1\|1235581_1236226_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	1.52718e-114
NZ_CP029751.1\|WP_000531320.1\|1251918_1252251_+\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.84113e-47
NZ_CP029751.1\|WP_000007691.1\|1250681_1251932_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP029751.1\|WP_000687335.1\|1254951_1255689_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	1.59255e-164
NZ_CP029751.1\|WP_001261987.1\|1254448_1254952_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.02289e-68
NZ_CP029751.1\|WP_000426914.1\|1245888_1246122_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
NZ_CP029751.1\|WP_000181404.1\|1255791_1256142_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70

>NZ_CP029751.1|WP_000167269.1|1244848_1245583_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>NZ_CP029751.1|WP_000047351.1|1243929_1244856_+|ACP-S-malonyltransferase
MSKTAIIFPGQGAQKVGMAQDLYNNNDQATEILTSAANTLDFDILETMFTDEDGKLGETENTQPALLTHSSALLAALKNLNPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAFPTGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWHDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWNEND
>NZ_CP029751.1|WP_000239748.1|1242950_1243937_+|phosphate-acyltransferase-PlsX
MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDEKKYNLNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGDIYAQKIRGIDNPKISLLNIGTEPAKGNSLTKKSYELLNQDHSLNFVGNIEAKTLMDGDTDVVVTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKLAGAILKKDLAEFAKKMDYSEYGGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVQTMKETVGESNE
>NZ_CP029751.1|WP_001548538.1|1242373_1242946_+|transcription-factor-FapR
MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFKMFYDKRG
>NZ_CP029751.1|WP_001151505.1|1240110_1242171_+|ATP-dependent-DNA-helicase-RecG
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD
>NZ_CP029751.1|WP_000623894.1|1238274_1239921_+|DAK2-domain-containing-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGINMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAVEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVAKLDKDEFVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGKVFNYGQQYGELIKLKVENMREQHREVIRKEQHTAKPKMETVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNKNILMASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSGSLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLNEMLAEDSEILTVIIGQDAEQAVTDNMINWIEEQYPDVEVEVHEGGQPIYQYFFSVE
>NZ_CP029751.1|WP_000171418.1|1237885_1238260_+|Asp23/Gls24-family-envelope-stress-response-protein
MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRDGIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLNVSVNSINIYVQGVRVNNTGKKA
>NZ_CP029751.1|WP_000517908.1|1237254_1237443_-|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>NZ_CP029751.1|WP_000547901.1|1236232_1236874_+|thiamine-diphosphokinase
MHINLLCSDRHLPQDIWAKSNEGKWGGVDRGALILLKHQIIPFFSVGDFDSVSKEERQLLTEQLQIKPVQAEKADTDLALAVDKAVALGFDSITIYGATGGRLDHFFGAIQLLLKKAYYKHDVHIEIIDQQNKIELLPKGQHTVEKDKSYPYISFIPMTDDVELSLAGFKYNLARQMLNIGSTLTISNEIESLQAKVTVHDGLILQIRSTDLN
>NZ_CP029751.1|WP_000164332.1|1235581_1236226_+|ribulose-phosphate-3-epimerase
MTKLYPSLLSVDFLDLQHELKRLEEAGVDGVHFDVMDGQFVPNISIGLPILDAVRKGTTLPIDVHLMIENPEKYIASFAEHGADMISIHVESTPHIHRAIQMIKHLDKKAGVVINPGTPISQIEPILDIVDYVLVMTVNPGFGGQSFIDQCVEKIAGLNAIKMERQLNFDIEVDGGVNTDTAKVCVENGATMLVTGSFFFKQEDYKKVTQALKG
>NZ_CP029751.1|WP_000426914.1|1245888_1246122_+|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
>NZ_CP029751.1|WP_000043237.1|1246237_1246969_+|ribonuclease-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>NZ_CP029751.1|WP_000262687.1|1247115_1250682_+|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLIELLENISNEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRVVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESVTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQSQQTKHQLNDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEATLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAVFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>NZ_CP029751.1|WP_000007691.1|1250681_1251932_+|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFATNKENEEVKSLTEEQGQDKLEDTHSEGSTQDVNDLVENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGTK
>NZ_CP029751.1|WP_000531320.1|1251918_1252251_+|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQQLEDLE
>NZ_CP029751.1|WP_000863474.1|1252276_1253644_+|signal-recognition-particle-protein
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>NZ_CP029751.1|WP_000268754.1|1253985_1254261_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>NZ_CP029751.1|WP_001261987.1|1254448_1254952_+|ribosome-maturation-factor-RimM
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>NZ_CP029751.1|WP_000687335.1|1254951_1255689_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTKQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>NZ_CP029751.1|WP_000181404.1|1255791_1256142_+|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029751_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029751_3

1847634-1847772

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTGCA	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of NZ_CP029751_3

>merge|NZ_CP029751|3|1847634-1847772|CRISPRCasFinder
TTTATCGTTGTCCTCCGCCAACTTGCACTGCCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCGCCAACTTGCACATTTTTGTAAGCTGACTTTTTGTCAGCTTCTATGTTGGGGCCCCGCCAACTTGCA

>NZ_CP029751|3|3|1847634-1847772|CRISPRCasFinder
TTTATCGTTGTCCTCCGCCAACTTGCA	CTGCCTGTAGAAATTGGTGTTCCAATTTC
TCTATGTTGGGGCCCCGCCAACTTGCA	CATTTTTGTAAGCTGACTTTTTGTCAGCT
TCTATGTTGGGGCCCCGCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029751.1\|WP_000989112.1\|1845780_1847073_+\|arsenite-efflux-transporter-membrane-subunit-ArsB	unknown	unknown	gnl\|CDD\|185342
NZ_CP029751.1\|WP_001032833.1\|1847891_1848746_-\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226656
NZ_CP029751.1\|WP_025174708.1\|1851197_1851833_+\|CPBP-family-intramembrane-metalloprotease-SdpA	unknown	unknown	gnl\|CDD\|376806
NZ_CP029751.1\|WP_001030467.1\|1850456_1850900_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_001096498.1\|1852270_1852984_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
NZ_CP029751.1\|WP_001153737.1\|1850026_1850470_+\|competence-protein-ComK	unknown	unknown	gnl\|CDD\|368849
NZ_CP029751.1\|WP_001261670.1\|1843442_1844945_-\|FAD/NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|226906
NZ_CP029751.1\|WP_000453314.1\|1854763_1855597_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223729
NZ_CP029751.1\|WP_001008551.1\|1839610_1840075_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP029751.1\|WP_001196353.1\|1838487_1839489_+\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|223580
NZ_CP029751.1\|WP_014937042.1\|1838256_1838376_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_001159035.1\|1840087_1841269_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|181774
NZ_CP029751.1\|WP_000077341.1\|1841918_1842962_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP029751.1\|WP_001200551.1\|1853798_1854164_+\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|184566
NZ_CP029751.1\|WP_000221182.1\|1845466_1845781_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP029751.1\|WP_000623480.1\|1854160_1854514_+\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|223317
NZ_CP029751.1\|WP_000091447.1\|1853241_1853544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000384171.1\|1849021_1849246_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000163237.1\|1847090_1847486_+\|arsenate-reductase-(thioredoxin)	unknown	unknown	gnl\|CDD\|237415
NZ_CP029751.1\|WP_000493886.1\|1841279_1841912_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455

Protein	Function_ID	Function_description	E-value
NZ_CP029751.1\|WP_000989112.1\|1845780_1847073_+\|arsenite-efflux-transporter-membrane-subunit-ArsB	gnl\|CDD\|185342	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB.	0
NZ_CP029751.1\|WP_001032833.1\|1847891_1848746_-\|glucosaminidase-domain-containing-protein	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	1.19001e-119
NZ_CP029751.1\|WP_025174708.1\|1851197_1851833_+\|CPBP-family-intramembrane-metalloprotease-SdpA	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.4913e-12
NZ_CP029751.1\|WP_001096498.1\|1852270_1852984_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	6.07697e-151
NZ_CP029751.1\|WP_001153737.1\|1850026_1850470_+\|competence-protein-ComK	gnl\|CDD\|368849	pfam06338, ComK, ComK protein. This family consists of several bacterial ComK proteins. The ComK protein of Bacillus subtilis positively regulates the transcription of several late competence genes as well as comK itself. It has been found that ClpX plays an important role in the regulation of ComK at the post-transcriptional level.	0.0018406
NZ_CP029751.1\|WP_001261670.1\|1843442_1844945_-\|FAD/NAD(P)-binding-protein	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	3.52558e-170
NZ_CP029751.1\|WP_000453314.1\|1854763_1855597_-\|aldo/keto-reductase	gnl\|CDD\|223729	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only].	3.10413e-137
NZ_CP029751.1\|WP_001008551.1\|1839610_1840075_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	1.09534e-89
NZ_CP029751.1\|WP_001196353.1\|1838487_1839489_+\|proline-dehydrogenase	gnl\|CDD\|223580	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism].	5.58806e-91
NZ_CP029751.1\|WP_000493886.1\|1841279_1841912_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	1.3159e-89
NZ_CP029751.1\|WP_001159035.1\|1840087_1841269_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP029751.1\|WP_000077341.1\|1841918_1842962_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.08027e-89
NZ_CP029751.1\|WP_001200551.1\|1853798_1854164_+\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|184566	PRK14201, PRK14201, fluoride efflux transporter CrcB.	6.88428e-55
NZ_CP029751.1\|WP_000221182.1\|1845466_1845781_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	6.54586e-20
NZ_CP029751.1\|WP_000163237.1\|1847090_1847486_+\|arsenate-reductase-(thioredoxin)	gnl\|CDD\|237415	PRK13530, PRK13530, arsenate reductase (thioredoxin).	4.01724e-92
NZ_CP029751.1\|WP_000623480.1\|1854160_1854514_+\|CrcB-family-protein	gnl\|CDD\|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	1.05967e-24

>NZ_CP029751.1|WP_000163237.1|1847090_1847486_+|arsenate-reductase-(thioredoxin)
MTKKTIYFICTGNSCRSQMAEGWAKQILAEDWKVYSAGIETHGVNPKAIEAMKEVGIDISNHTSDLIDNNIIKNSNLVVTLCSDADVNCPSLPTNVKKEHWGIDDPAGKPWSEFQRVRDEIKIAIENFKSR
>NZ_CP029751.1|WP_000989112.1|1845780_1847073_+|arsenite-efflux-transporter-membrane-subunit-ArsB
MMTTLATLIFLVTLLFVLWQPKGLDIGITALTGAFIAIITGVVSFSDVFEVTGIVWNATLTFVSVILISLILDKVGLFEWSAIHMLHASKGNGLKMFVYIILLGAIVAAFFANDGAALILTPIVLAMVKNIGFNKRAIFPFIIASGFIADTTSLPLIVSNLVNIISADYFHVGFVRYFSRMIIPNLFSLLASIIVLWIYFRKAIPKTFDDNKIKRPKDAINDLKLFKISWIMLVILLFGYLISEFTKIPVSIFTGIIAFIFLMLARKSNAVNIKEVIKGAPWNIVLFSIGMYIVVFGLRNAGITLILAKILEYISNYGLFSTILGMGFISAFLSSIMNNMPTVLIDAIAIGQSNVHGLLKEGLIYANVIGSDLGPKITPIGSLATLLWLHVLTQKDVKISWGTYFKTGIIITIPVLFITLIGLYLTLIIF
>NZ_CP029751.1|WP_000221182.1|1845466_1845781_+|winged-helix-turn-helix-transcriptional-regulator
MTYKELATYLKVLSDSSRLEILDILSCGELCACDLLEHFQFSQPTLSYHMKALVKTNLVTTRKIGNKHLYQLNHNIFDSVINNLSKVHTSNQRCICHNLKTGEC
>NZ_CP029751.1|WP_001261670.1|1843442_1844945_-|FAD/NAD(P)-binding-protein
MRVAIIGMGTAGVSVLRELVKHPKFNQLDIDLYDDKVNMGQGVPFQNDSSELLINMPSKKMSLNLDDETEFWKWYKQQTDFNFDEPAYLPRFVFGHYMKSYLSMFTKKYPNISTNYNKVQEIYTNSNIDETNLTYYICTTNSEQSWQAYDYVFLTCGTFAYHDPYNLKGKKGYIATPYPTYNTLDEVNELDDIAIIGTGLASLDVVRYVAAHHPKLPITMTSRSAHLPSVRGTMIDVTFKYLTKDKLNDIKKHHFGNAPLDTLVSLFLKECAEYDIDFKKLVHRRTGNHIADLKYDLARPTEMGIFQSMIEHLKENLNWIWNSLSIEDQHQFNQKYSKMIQLNSNPMPPRTAELIIELIENKSLILKKDLEDVKHDGKLYYFSYKNQESVDIYNVVINATGAKSHLNELDQDDQLIKNLENRQIVQAHPMGGIQIIPETNQVISPRFGTLTNMIAIGQMTNGVNKLRNGVKMIVEQVAHTVSQLYDALESNEQQQRSDNQ
>NZ_CP029751.1|WP_000077341.1|1841918_1842962_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MSQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDDTLRDHGIEVECVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRHDAVLTGRRTVELDDPQYTTRIQDGKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTENPNLTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK
>NZ_CP029751.1|WP_000493886.1|1841279_1841912_-|riboflavin-synthase
MFTGIVEEIGVVKSVQIRQSVRTIEIEAHKITADMHIGDSISVNGACLTVIDFDQTSFTVQVIKGTENKTYLADVKRQSEVNLERAMSGNGRFGGHFVLGHVDELGTVSKINETANAKIITIQCSQHINNQLVKQGSITVDGVSLTVFDKHDNSFDIHLIPETRRSTILSSKKLGDKVHLETDVLFKYVENILNKDKDQLSVDKLRAFGF
>NZ_CP029751.1|WP_001159035.1|1840087_1841269_-|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MQFDNIDSALMALKNGETIIVVDDENRENEGDLVAVTEWMNDNTINFMAKEARGLICAPVSKDIAQRLDLVQMVDDNSDIFGTQFTVSIDHVDTTTGISAYERTLTAKKLIDPSSEAKDFNRPGHLFPLVAQDKGVLARNGHTEAAVDLAKLTGAKPAGVICEIMNDDGTMAKGQDLQKFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHENVRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHGGMIIYLPQEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERIEVIVPETVHNHDYMETKKIKMGHLI
>NZ_CP029751.1|WP_001008551.1|1839610_1840075_-|6,7-dimethyl-8-ribityllumazine-synthase
MNFEGKLIGKDLKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAVITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLKSIKA
>NZ_CP029751.1|WP_001196353.1|1838487_1839489_+|proline-dehydrogenase
MALLKNFFIGLSNNSFLNNAAKKVGPRLGANKVVAGNTIPELINTIEYLNDKNIAVTVDNLGEFVGTVEESNHAKEQILTIMDALHQHGVKAHMSVKLSQLGAEFDLELAYQNLREILLKANTYNNMHINIDTEKYASLQQIVQVLDRLKGEFRNVGTVIQAYLYDSHELVDKYQDLRLRLVKGAYKENESIAFQSKEDVDANYIKIIEQRLLNARNFTSIATHDHRIINHVKQFMKENHIEKDRMEFQMLYGFRSELAEEIANEGYNFTIYVPYGDDWFAYFMRRLAERPQNLSLAVKEFVKPAGLKRVGIIAALGATVMLGLSIIKKLCRK
>NZ_CP029751.1|WP_014937042.1|1838256_1838376_-|hypothetical-protein
MMLISFVYNNMDNNNTINRNLHSEFAIIMLLKINEKGAV
>NZ_CP029751.1|WP_001032833.1|1847891_1848746_-|glucosaminidase-domain-containing-protein
MNKHKKGSIFGIIGLVVIFAVVSFLFFSMISDQIFFKHVKSDIKIEKLNVTLNDAAKKQINNYTSQQVSNKKNDAWRDASATEIKSAMDSGTFIDNEKQKYQFLDLSKYQGIDKNRIKRMLVDRPTLLKHTDDFLKAAKDKHVNEVYLISHALLETGAVKSELANGVEIDGKKYYNFYGVGALDKDPIKTGAEYAKKHGWDTPEKAISGGADFIHKHFLSSTDQNTLYSMRWNPKNPGEHQYATDIKWAESNATIIADFYKNMKTEGKYFKYFVYKDDSKHLNK
>NZ_CP029751.1|WP_000384171.1|1849021_1849246_-|hypothetical-protein
MDYAHLNLEHFFARNDDLDVIRDRADFVMINNFTNEMMYRDGQIEGTIDLNQYYYKNRSNAASFIMMDYKKETK
>NZ_CP029751.1|WP_001153737.1|1850026_1850470_+|competence-protein-ComK
MQDNSTKYLLYIQTATSNHLETNCVFLHCDYILEVPINKLVSYYAKLHLSSQSVLIETAKDILNINKLVPIYINAKTILFPLKHKRAPIQIYINAHYIVGMTAIENSTLIHFQEGIQLEVDEPFSLVSKKCHESLALKHFIENTISN
>NZ_CP029751.1|WP_001030467.1|1850456_1850900_-|hypothetical-protein
MNKASFDKKVKKQLWFLNKKEKQALDQRLSSISDDDSVNLNKPVTFANAYLRQNVFRNKETKSYSMFVTLVVMMFAYVALLGLFLFGLITSLSGVQFFVSPKVDLSTTVVILTIIGAILLMIISIYFIKIVTSYFTKKLLEIKFNSK
>NZ_CP029751.1|WP_025174708.1|1851197_1851833_+|CPBP-family-intramembrane-metalloprotease-SdpA
MQKFKDFFYDDLSVTRGNYFLTLMAAFFITIILFIGIVVSEVHLLYSMLIVLVGLILLRLFKINLFSFKKLTLSQVIYIIGGALLIYGLDNLYLYFHDVPANEQQLEREIRNTPFFISIFTVTIIPAIVEEIVFRGMIIRVIFRKHLFLGLIVSSLVFASLHESDTWIGYLPYLYSGLIFGLIYIKTKRLEVVIFMHFLNNLLALLFIIWR
>NZ_CP029751.1|WP_001096498.1|1852270_1852984_-|transaldolase
MAKLNVEVFADGADIEEMKAAYKNKQVDGFTTNPSLMAKAGVTDYKAFAEEAVKEIPDASISFEVFADDLETTEKEAAILKQYGENVFVKIPIVNTKGESTIPLIKKLSADNVRLNVTAVYTIEQVKEITEAVTEGVPTYVSVFAGRIADTGVDPLPLMKEAVKVTHSKDGVKLLWASCRELFNVIQADEIGADIITCPADVVKKVNTNLGRDINELSVDTVKGFAKDIQSSGLSIL
>NZ_CP029751.1|WP_000091447.1|1853241_1853544_+|hypothetical-protein
MSRSKKYFYLSSLMIILSFFFNTNNVFLSGLFNSFIKLILFCSVINSIVLILSIIFADRSIKSLKPDTDWIRIASKSLPWIILIVILVHIFSIVRTFGFI
>NZ_CP029751.1|WP_001200551.1|1853798_1854164_+|fluoride-efflux-transporter-CrcB
MQYVYIFIGGALGALLRYLISFLNTDGGFPIGTLVANLTGAFVMGLLTALTITFFSNHPTLKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYAIISYVFGILLCYVGIKLGGGLS
>NZ_CP029751.1|WP_000623480.1|1854160_1854514_+|CrcB-family-protein
MISIILVMIGGGLGAIARSAITDYFNHKFTSKLPIATLIVNLIGSFLIGLTIGLSISISWFPAFFVTGFLGGLTTFSTLAKELTLMMTPKFNINLFLNYSLLQFIIGFIACYIGYHI
>NZ_CP029751.1|WP_000453314.1|1854763_1855597_-|aldo/keto-reductase
MEVKTFYNGNTMPQIGLGTFRVENDENCMESVKYAIEQGYRSIDTAKVYGNEEQVGAGIRAGLESTGIAREDLFITSKLYFEDFGRENVAAAYEASLSRLGLKYLDLYLVHWPGTNEAVMVDTWKGMEDLYKNNKVKNIGVSNFEPEHLEALLAQVSIKPVINQVEYHPYLTQHKLKLYLAAQHIVMESWSPLMNAQILNDETIKDIAQELGKSPAQVVLRWNVQHGVVTIPKSVTPNRISENFQIFDFELSDEQMTRIDGLNQDKRIGPDPKTFEG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029751_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029751_4

2121762-2121841

Orphan

Consensus_repeat	Method
GGCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP029751_4

>merge|NZ_CP029751|4|2121762-2121841|CRISPRCasFinder
GGCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACCCCAACTTGCATTGT

>NZ_CP029751|4|4|2121762-2121841|CRISPRCasFinder
GGCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCACCCCAACTTGCATTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029751.1\|WP_000201395.1\|2124483_2124663_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_171994849.1\|2127595_2127781_-\|DUF3102-domain-containing-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000591749.1\|2110825_2111167_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_115287578.1\|2116062_2117118_-\|bi-component-leukocidin-LukGH-subunit-H	unknown	unknown	gnl\|CDD\|369625
NZ_CP029751.1\|WP_001549185.1\|2111630_2112344_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP029751.1\|WP_000216892.1\|2123860_2124487_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000846280.1\|2130825_2131404_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_001108473.1\|2119274_2120144_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP029751.1\|WP_001045081.1\|2121981_2123289_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|273349
NZ_CP029751.1\|WP_000595393.1\|2115024_2116041_-\|bi-component-leukocidin-LukGH-subunit-G	unknown	unknown	gnl\|CDD\|369625
NZ_CP029751.1\|WP_000278573.1\|2120146_2121349_-\|5-aminolevulinate-synthase	unknown	unknown	gnl\|CDD\|236370
NZ_CP029751.1\|WP_000857173.1\|2112534_2113572_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP029751.1\|WP_000358778.1\|2129667_2130009_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000771368.1\|2130011_2130539_-\|spore-coat-protein	unknown	unknown	gnl\|CDD\|227864
NZ_CP029751.1\|WP_000705240.1\|2111370_2111553_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_001239268.1\|2125796_2126732_+\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765
NZ_CP029751.1\|WP_000206649.1\|2117553_2118777_+\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|181490
NZ_CP029751.1\|WP_001035598.1\|2128243_2128948_+\|toxic-shock-syndrome-toxin-TSST-1	unknown	unknown	gnl\|CDD\|106074
NZ_CP029751.1\|WP_000759683.1\|2109887_2110820_+\|ATP-dependent-helicase	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235735
NZ_CP029751.1\|WP_000448769.1\|2130589_2130808_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374753

Protein	Function_ID	Function_description	E-value
NZ_CP029751.1\|WP_001108473.1\|2119274_2120144_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.86916e-09
NZ_CP029751.1\|WP_115287578.1\|2116062_2117118_-\|bi-component-leukocidin-LukGH-subunit-H	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	4.33732e-77
NZ_CP029751.1\|WP_001549185.1\|2111630_2112344_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	0.000176738
NZ_CP029751.1\|WP_001035598.1\|2128243_2128948_+\|toxic-shock-syndrome-toxin-TSST-1	gnl\|CDD\|106074	PRK13037, PRK13037, superantigen-like protein; Reviewed.	2.37283e-09
NZ_CP029751.1\|WP_001045081.1\|2121981_2123289_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	9.80292e-81
NZ_CP029751.1\|WP_000595393.1\|2115024_2116041_-\|bi-component-leukocidin-LukGH-subunit-G	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	3.91552e-99
NZ_CP029751.1\|WP_000278573.1\|2120146_2121349_-\|5-aminolevulinate-synthase	gnl\|CDD\|236370	PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.	0
NZ_CP029751.1\|WP_000857173.1\|2112534_2113572_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.70851e-24
NZ_CP029751.1\|WP_000771368.1\|2130011_2130539_-\|spore-coat-protein	gnl\|CDD\|227864	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane].	5.42048e-39
NZ_CP029751.1\|WP_001239268.1\|2125796_2126732_+\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	1.87825e-83
NZ_CP029751.1\|WP_000206649.1\|2117553_2118777_+\|ArgE/DapE-family-deacylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP029751.1\|WP_000448769.1\|2130589_2130808_-\|hypothetical-protein	gnl\|CDD\|374753	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus. SAPIS-gp6 is a family of proteins produced from the pathogenicity island SAPI1 in pathogenic Staphylococcus aureus. This is a mobile genetic element that carries genes for several superantigen toxins. SAPIS-gp6 is a dimeric protein produced from the pathogenicity island with a helix-loop-helix motif similar to that of bacteriophage scaffolding proteins. It is thought to determine the size of the capsids of distribution of the SAPI1 genome as it acts as an internal scaffolding protein during capsid size determination.	1.4472e-18
NZ_CP029751.1\|WP_000759683.1\|2109887_2110820_+\|ATP-dependent-helicase	gnl\|CDD\|235735	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated.	2.00939e-42

>NZ_CP029751.1|WP_000278573.1|2120146_2121349_-|5-aminolevulinate-synthase
MYKTLFFDKIAELKEKGSYRIFTEINRIANKYPLAKGEDGKEVVVFCSNDYLGMSQNQEVINVMSDALKEYGAGAGGSRNIGGSHKYFKLLENEIAKWHKKDSALVFPTGYSSNDASLQGLLRIFPEMIVFSDSKNHASIINALRSVKNKIEIFEHNNVKHLNELLNQYDINIPKLIVFESVYSMDGDIAPIVEIVELAKEYNSLTFLDEVHAIGMYGEEGRGYSDVVGVQEDIDIIQSTMAKGIGIIGGYITGDQLLIDVIRSYSSGFIFTTALPPVIAAGCLTSIKIVRSNDKLREELQDKTKYLKEKFKENGIEVLKQSKTHILPVIIGDSKKCEEAAKLLLDKFNIYVQAINSPTVEIGTERFRINITPNHTKEQMDLLVSSIVYVFDFLNIRRSV
>NZ_CP029751.1|WP_001108473.1|2119274_2120144_-|DMT-family-transporter
MNYLMYLFCMFIWGLNFIAVKIQGDSLPLEVALLYRSLIAFSLFGVMFIFIFKKLKLNNTNWFTIIGFGLCNFTISYLLLYYGTFYSSAAIVTLIFSMKAILTPIFISMVFKRKISNRIYIGGGLGVVSVVVILYPDLNSLTNEFIIGVAFALLGTIITSIGDVLSLYNSESKVHPVLSNTIGMLSAVIFLLIYTSFKGYRYSFPLELNFWFGLLYLSILASFLAWFFYLKLINNIGAAESGYMVAMFPAIGGIASVIMGETHLSINLVVGIILACMGAYLALYKPKPS
>NZ_CP029751.1|WP_000206649.1|2117553_2118777_+|ArgE/DapE-family-deacylase
MTTFSENEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKDGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINNVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVNKDDIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>NZ_CP029751.1|WP_115287578.1|2116062_2117118_-|bi-component-leukocidin-LukGH-subunit-H
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNPKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNGYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>NZ_CP029751.1|WP_000595393.1|2115024_2116041_-|bi-component-leukocidin-LukGH-subunit-G
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKNKMPVTVSEGFNPEFLAVMSHDKKDEGKSKFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>NZ_CP029751.1|WP_000857173.1|2112534_2113572_+|site-specific-integrase
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLAEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPIYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>NZ_CP029751.1|WP_001549185.1|2111630_2112344_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MTHNIEKRINKLKTSGNPKFKKLDSDIHYLLKRFEGEKNHKGFYPKFKQGEIVFVDFGINVNKEFSNSHFAIVMNKNDSNTEDIVNVIPLSSKENKKYLKMNFDLKWEYYLRLFLNLISAQNNSAILKEVFDKKYQKNNTEFITKDYFSEFISDSLEIENKLNKIDRNINNIVSAIDKVKKLKGNSYACINSFQPISKFRIRKVLPQKIKNPVIDSSDIMLLINRINNNILQIPDIR
>NZ_CP029751.1|WP_000705240.1|2111370_2111553_+|hypothetical-protein
MKITNCKIKKETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKIDGDKLTKEDSL
>NZ_CP029751.1|WP_000591749.1|2110825_2111167_+|hypothetical-protein
MIKKIFTKKHVFLVIEDENHNHSDAVFGKSILLSIYVGVNKKTNSKSGKFIYLDRSKRIVRQSDITKIESANENDVDFYNLLKKEKEIVYSKNIVDKYNLANYIIYYEVSTKE
>NZ_CP029751.1|WP_000759683.1|2109887_2110820_+|ATP-dependent-helicase
MKKYDIAVLDFETMNEHMNSPCEVAVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPEDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSINIFRSFHAISSFKLENLCSLYDINKEKLHSAKFDVLALSKMLISLAKNNQHYSVLKLIHYMPKQYIRFSKYSNSPTKLFDSGFQKIHMKISEINKIEVESVIPILKDKNVVFTGNFDTEKQDLMILTRKKGAYIRSDVTAKTDILVEGVQDDKYKDVNGLVSKQRKAREYVGNGAKIQFLNEEDLINLIKE
>NZ_CP029751.1|WP_001045081.1|2121981_2123289_+|TrkH-family-potassium-uptake-protein
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQNMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSASGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>NZ_CP029751.1|WP_000216892.1|2123860_2124487_-|hypothetical-protein
MTVKVISLSELLTGDKQEVKRKIPSVLNILNSFETISISGSESAHDVDLFLKNKSIAFDRQNLSRTHLVFSQFKSKQILVGYFTISNKPLVFTKRMLDKISNTLKKKLYQKGETHSGNDNLIIQGYLIAQIGKNYSEEALATKSINGNDLLTLAYEKVLEGANIFGGSYIWIEYEDVDRLREFYRKFGFTEIKDHTSENNLKMAILKI
>NZ_CP029751.1|WP_000201395.1|2124483_2124663_-|hypothetical-protein
MATISITTDYKFTKKSAQKLIDAMEINENKSNVNKTNIKATKIKSTYEIENLLKDYRIN
>NZ_CP029751.1|WP_001239268.1|2125796_2126732_+|TDT-family-transporter
MRLQKAPLVTSGLILGLLGLGNLLKDISLVLNAICGIFALFIWVHLLCTILNNFKNVKEQLNTPLVSSVFTTFFMSGFLGTTYLNTYFSDVTIITSLITPLWLLCLMGIMIHMIIFSIKYLKDFSLENVYPSWTVLYIGIAIAGLTAPISGFYLIGKLSVIYGFLATCIVLPIVFKRLKTYPLQTSIKPNTSTICAPFSLVAAAYVITFPKANDLIVIILLVLAQFFYFYIIFKLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLTYPEIWEWLLFFEITLATLIVLRVFLGYVHFFFKTSPKASYNS
>NZ_CP029751.1|WP_171994849.1|2127595_2127781_-|DUF3102-domain-containing-protein
MKNINLYRTQAHRFIKVSEEIKDVGTYQHLGLRALSEIASLPVPERTKEHTTSNGETKMPY
>NZ_CP029751.1|WP_001035598.1|2128243_2128948_+|toxic-shock-syndrome-toxin-TSST-1
MNKKLLMNFFIVSPLLLATIATDFTPVPLSSNQIIKTAKASTNDNIKDLLDWYSSGSDTFTNSEVLDISLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN
>NZ_CP029751.1|WP_000358778.1|2129667_2130009_-|hypothetical-protein
MDKKQIKDFVCDYHKRTRSDVLIDDEINTDEFFSIGDENSNEWMADDNIDDHIVKNHLEMIVDQVANDKEFYIFDSLIQGRSFKDISNVLECSEQSVRLWYETLLDKIVEVIE
>NZ_CP029751.1|WP_000771368.1|2130011_2130539_-|spore-coat-protein
MKLLKTKNCLYYRNGDNKLSEYQLLTQFNPAFINKKIKMCEFQIESMYHMSASTTTCDEIMGVVSVSYPIEKLVIKIIETKAGLQNYKNRSINNMALLKKVLNHYTEKEQKQVVKYMRSNGRYKPYNVIERLQVDLYQASIKQRSERQKQRNTAIENSKIARVNAYHQSSYVKVV
>NZ_CP029751.1|WP_000448769.1|2130589_2130808_-|hypothetical-protein
METKYELNNTKKVANAFGLNEADANLLINAVDLDIKNNMQEISSELQQSEQFKQKQYGTTLQNLAKQNRIIK
>NZ_CP029751.1|WP_000846280.1|2130825_2131404_-|hypothetical-protein
MKTESYFKEYNQFVIDQQKAIQELEQERNALESKIKIDKSTYKQLIMDGQDDKADNLYQATDADEKKLKALNKRLETKKSVSKEVKYQKTIELLKHQSELSSLYESEKQSALGKLKKVVDAYNEIIDEIEDINDRYEDEHQQYASIYSQEQLYDDKEAREALNGYFRENIFTSYINGNDLPYEHNNKLFLKR

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Crispr_ID: NZ_CP029751_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029751_5

2378949-2379031

Orphan

Consensus_repeat	Method
TGTCAGCTTCTGTGTTGGGGCCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029751_5

>merge|NZ_CP029751|5|2378949-2379031|CRISPRCasFinder
TGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGTCTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCC

>NZ_CP029751|5|5|2378949-2379031|CRISPRCasFinder
TGTCAGCTTCTGTGTTGGGGCCCCGCC	AACTTGCACATTATTGTAAGCTGTCTTTC
TGTCAGCTTCTGTGTTGGGGCCCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029751.1\|WP_001806412.1\|2379183_2380206_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|274250
NZ_CP029751.1\|WP_042906117.1\|2375336_2375588_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000600977.1\|2375579_2376344_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP029751.1\|WP_000866967.1\|2380831_2381065_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|340452
NZ_CP029751.1\|WP_000602950.1\|2381530_2382016_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
NZ_CP029751.1\|WP_000592310.1\|2370398_2373566_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP029751.1\|WP_000066900.1\|2378252_2378603_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
NZ_CP029751.1\|WP_001161080.1\|2369894_2370212_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000503819.1\|2383830_2384337_-\|molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|223595
NZ_CP029751.1\|WP_000413859.1\|2373682_2374948_-\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
NZ_CP029751.1\|WP_000951066.1\|2376506_2376947_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP029751.1\|WP_000184423.1\|2376939_2378151_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP029751.1\|WP_000808500.1\|2381070_2381517_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP029751.1\|WP_000139193.1\|2368443_2369352_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP029751.1\|WP_000051210.1\|2369484_2369649_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000134534.1\|2383334_2383829_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP029751.1\|WP_000643982.1\|2380225_2380825_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP029751.1\|WP_000259729.1\|2382012_2383272_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP029751.1\|WP_000913006.1\|2385540_2386146_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226628
NZ_CP029751.1\|WP_000076922.1\|2384367_2385372_-\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|181084

Protein	Function_ID	Function_description	E-value
NZ_CP029751.1\|WP_001806412.1\|2379183_2380206_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	5.50403e-165
NZ_CP029751.1\|WP_000602950.1\|2381530_2382016_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	9.59347e-51
NZ_CP029751.1\|WP_000600977.1\|2375579_2376344_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.19972e-38
NZ_CP029751.1\|WP_000866967.1\|2380831_2381065_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	5.99629e-25
NZ_CP029751.1\|WP_000643982.1\|2380225_2380825_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.01555e-66
NZ_CP029751.1\|WP_000066900.1\|2378252_2378603_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
NZ_CP029751.1\|WP_000592310.1\|2370398_2373566_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP029751.1\|WP_000503819.1\|2383830_2384337_-\|molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.00506e-64
NZ_CP029751.1\|WP_000413859.1\|2373682_2374948_-\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	2.63961e-142
NZ_CP029751.1\|WP_000951066.1\|2376506_2376947_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.06862e-14
NZ_CP029751.1\|WP_000184423.1\|2376939_2378151_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.52455e-72
NZ_CP029751.1\|WP_000808500.1\|2381070_2381517_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
NZ_CP029751.1\|WP_000139193.1\|2368443_2369352_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.64433e-42
NZ_CP029751.1\|WP_000076922.1\|2384367_2385372_-\|ThiF-family-adenylyltransferase	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	5.96924e-132
NZ_CP029751.1\|WP_000134534.1\|2383334_2383829_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.70933e-97
NZ_CP029751.1\|WP_000259729.1\|2382012_2383272_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	8.68609e-157
NZ_CP029751.1\|WP_000913006.1\|2385540_2386146_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.03488e-114

>NZ_CP029751.1|WP_000066900.1|2378252_2378603_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>NZ_CP029751.1|WP_000184423.1|2376939_2378151_+|MFS-transporter
MTNQGSLNKSPIFTKSFTINFLVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLVFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>NZ_CP029751.1|WP_000951066.1|2376506_2376947_+|winged-helix-DNA-binding-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKYQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>NZ_CP029751.1|WP_000600977.1|2375579_2376344_-|VOC-family-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLYSGGYHHKYGTFNKLGYINENYIELLDVENNGKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLISKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLA
>NZ_CP029751.1|WP_042906117.1|2375336_2375588_+|hypothetical-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLAIIHMGILAHSTYVYLC
>NZ_CP029751.1|WP_000413859.1|2373682_2374948_-|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEIQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKELAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>NZ_CP029751.1|WP_000592310.1|2370398_2373566_-|efflux-RND-transporter-permease-subunit
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASASNNISDMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMIEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSRDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>NZ_CP029751.1|WP_001161080.1|2369894_2370212_+|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVIFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>NZ_CP029751.1|WP_000051210.1|2369484_2369649_+|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>NZ_CP029751.1|WP_000139193.1|2368443_2369352_-|AEC-family-transporter
MTEQFTMIILLIALGYFLKRINYIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKCLGKKLLQSVPLVTYIVMFILNISHIHLPHMAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>NZ_CP029751.1|WP_001806412.1|2379183_2380206_-|GTP-3',8-cyclase-MoaA
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNRWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>NZ_CP029751.1|WP_000643982.1|2380225_2380825_-|molybdenum-cofactor-guanylyltransferase-MobA
MKAIILAGGHSVRFGKPKAFAEVNGETFYRRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKM
>NZ_CP029751.1|WP_000866967.1|2380831_2381065_-|molybdopterin-converting-factor-subunit-1
MKVLYFAEIKDILQKAQEDIMLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>NZ_CP029751.1|WP_000808500.1|2381070_2381517_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>NZ_CP029751.1|WP_000602950.1|2381530_2382016_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKTHGYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>NZ_CP029751.1|WP_000259729.1|2382012_2383272_-|molybdopterin-molybdotransferase-MoeA
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPYGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>NZ_CP029751.1|WP_000134534.1|2383334_2383829_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIYKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>NZ_CP029751.1|WP_000503819.1|2383830_2384337_-|molybdenum-cofactor-biosynthesis-protein-MoaB
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNDKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>NZ_CP029751.1|WP_000076922.1|2384367_2385372_-|ThiF-family-adenylyltransferase
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQLIDTKITYGDIWEGSHYSFGFSKMQRSACTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>NZ_CP029751.1|WP_000913006.1|2385540_2386146_-|ATP-binding-cassette-domain-containing-protein
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

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Crispr_ID: NZ_CP029751_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029751_6

2413166-2413251

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP029751_6

>merge|NZ_CP029751|6|2413166-2413251|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAAGTTGG

>NZ_CP029751|6|6|2413166-2413251|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGACGA
AAAGTCAGCTTACGATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029751.1\|WP_001030128.1\|2421127_2421820_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP029751.1\|WP_000717387.1\|2405128_2405938_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP029751.1\|WP_000032850.1\|2401793_2402537_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
NZ_CP029751.1\|WP_000426707.1\|2421844_2422582_-\|CPBP-family-intramembrane-metalloprotease-SdpB	unknown	unknown	gnl\|CDD\|376806
NZ_CP029751.1\|WP_000989006.1\|2406371_2407772_-\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
NZ_CP029751.1\|WP_000684154.1\|2411614_2412739_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|168661
NZ_CP029751.1\|WP_000840815.1\|2414845_2415319_-\|DUF1641-domain-containing-protein	unknown	unknown	gnl\|CDD\|225283
NZ_CP029751.1\|WP_000606719.1\|2422630_2422960_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000737704.1\|2409855_2410347_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP029751.1\|WP_000073195.1\|2423404_2424277_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP029751.1\|WP_001155283.1\|2415318_2418273_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|225918
NZ_CP029751.1\|WP_000739218.1\|2413519_2414296_-\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226656
NZ_CP029751.1\|WP_000831055.1\|2418876_2419824_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|181811
NZ_CP029751.1\|WP_000131814.1\|2402562_2404518_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP029751.1\|WP_000130470.1\|2419946_2420744_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|223559
NZ_CP029751.1\|WP_000417011.1\|2410707_2411523_+\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240655
NZ_CP029751.1\|WP_000206110.1\|2409196_2409619_+\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|225833
NZ_CP029751.1\|WP_000684567.1\|2407866_2408949_-\|NAD/NADP-octopine/nopaline-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|376763
NZ_CP029751.1\|WP_000921246.1\|2414317_2414551_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_041204333.1\|2405955_2406198_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029751.1\|WP_001030128.1\|2421127_2421820_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.61969e-57
NZ_CP029751.1\|WP_000717387.1\|2405128_2405938_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.28891e-30
NZ_CP029751.1\|WP_000417011.1\|2410707_2411523_+\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240655	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.69446e-138
NZ_CP029751.1\|WP_000426707.1\|2421844_2422582_-\|CPBP-family-intramembrane-metalloprotease-SdpB	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.1877e-10
NZ_CP029751.1\|WP_000989006.1\|2406371_2407772_-\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	1.34763e-115
NZ_CP029751.1\|WP_000684154.1\|2411614_2412739_-\|FAD-dependent-monooxygenase	gnl\|CDD\|168661	PRK06753, PRK06753, hypothetical protein; Provisional.	0
NZ_CP029751.1\|WP_000840815.1\|2414845_2415319_-\|DUF1641-domain-containing-protein	gnl\|CDD\|225283	COG2427, COG2427, Uncharacterized conserved protein [Function unknown].	1.02716e-29
NZ_CP029751.1\|WP_000737704.1\|2409855_2410347_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	5.8756e-33
NZ_CP029751.1\|WP_000073195.1\|2423404_2424277_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.40228e-80
NZ_CP029751.1\|WP_000831055.1\|2418876_2419824_-\|LCP-family-protein	gnl\|CDD\|181811	PRK09379, PRK09379, LytR family transcriptional regulator.	2.29371e-99
NZ_CP029751.1\|WP_000739218.1\|2413519_2414296_-\|glucosaminidase-domain-containing-protein	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	3.92332e-118
NZ_CP029751.1\|WP_000131814.1\|2402562_2404518_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.62473e-14
NZ_CP029751.1\|WP_000130470.1\|2419946_2420744_-\|inositol-monophosphatase	gnl\|CDD\|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	3.73116e-73
NZ_CP029751.1\|WP_000032850.1\|2401793_2402537_-\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	5.80404e-27
NZ_CP029751.1\|WP_000206110.1\|2409196_2409619_+\|DUF4870-domain-containing-protein	gnl\|CDD\|225833	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown].	3.13003e-52
NZ_CP029751.1\|WP_000684567.1\|2407866_2408949_-\|NAD/NADP-octopine/nopaline-dehydrogenase-family-protein	gnl\|CDD\|376763	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain. This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. The Pfam family consists mainly of octopine and nopaline dehydrogenases from Ti plasmids.	2.14162e-47
NZ_CP029751.1\|WP_001155283.1\|2415318_2418273_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|225918	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only].	0

>NZ_CP029751.1|WP_000684154.1|2411614_2412739_-|FAD-dependent-monooxygenase
MKIAIIGAGIGGLTAAALLQEQGHTIKVFEKNESVKEIGAGIGIGDNVLKKLGNHDLAKGIKNAGQILSTMTVLDDKDRPLTTVKLKSNTLNVTLPRQTLIDIIKSYVKDDAIFTNHEVTHIDNETDKVTIHFAEQESEAFDLCIGADGIHSKVRQSVNADSKVLYQGYTCFRGLIDDIDLKHPDCAKEYWGRKGRVGIVPLLNNQAYWFITINSKENNHKYSSFGKPHLQAYFNHYPNEVREILDKQSETGILLHNIYDLKPLKSFVYGRTILLGDAAHATTPNMGQGAGQAMEDAIVLVNCFNAYDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQYRSRLVVAVRNRIMKMMPNALAAGQTKFLYKSKEK
>NZ_CP029751.1|WP_000417011.1|2410707_2411523_+|2-hydroxyacid-dehydrogenase
MEKVYVAGAIPEVGLKLLQEHFEVEMYEGKGLVDKDTLIKGVKNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVKALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARNMMSKIVANAAISAVQAEKPQFVVN
>NZ_CP029751.1|WP_000737704.1|2409855_2410347_+|CHAP-domain-containing-protein
MKKLVTATTLTAGIGTALVGQAHHADAAENYTNYNNYNYNTTQTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNHTPSKGAILQSSEGPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
>NZ_CP029751.1|WP_000206110.1|2409196_2409619_+|DUF4870-domain-containing-protein
MTTEMNDVTNHQPNRKSNDENIMAMLIYLLSLFTSIIGPLIIWLLKKDESKLVDRAGKNYLNYTISYIIWSIVLVVITLIGVFLIATDIDFIIIIGFIITFIGILSIFAFSILSFVFTIIACVKYYNSQEYVIPLTIRFI
>NZ_CP029751.1|WP_000684567.1|2407866_2408949_-|NAD/NADP-octopine/nopaline-dehydrogenase-family-protein
MKIAIVGSGNGAVTAAVDMVSKGHDVKLYCRNQSISKFQNAIEKGGFDFNNEGDERFVKFTDISDDMEYVLKDAEIVQVIIPSSYIEYYADVMAEHVTDNQLIFFNMAAAMGSIRFMNVLEDRHIETKPQLAEANTLTYGTRVDFENAAVDLSLNVRRIFFSTYDRSCLNDCYDKVSSIYDHLVKEESLIKTNLENGNPEVHPGPTLLNVGRIDYAGEFALYKEGITKHTVRLLHAIELERLNLGRRLGFELSTAKESRIERGYLERDKEDEPLNRLFNTSPVFSQIPGPNHVESRYLTEDIAYGLVLWSSLGRVIDVPTPNIDAVIVIASTILERDFFEEGLTVEEIGLDKLDLEKYLK
>NZ_CP029751.1|WP_000989006.1|2406371_2407772_-|Na+/H+-antiporter-NhaC
MMTRKPTFLESISTMIVMVIVVVTGFVFFDIPIQVLLIIASAYATWIAKRVGLTWQDLEKGIAERLNTAMPAILIILAVGIIVGSWMFSGTVPALIYYGLDLLNPSYFLISAFFISAVTSVATGTAWGSASTAGIALISIGNQLGIPPGMAAGAIIAGAVFGDKMSPLSDTTNLAALVTKVNIFKHIHSMMWTTIPASIIGLLVWFIAGFQFKGHSNDKQIQTLLSELAQIYQINIWVWVPLIVIIVCLLFKMATVPAMLISSFSAIIVGTFNHHFKMTDGFKATFSGFNDSMIHQSHISSSVKSLLEQGGMMSMTQILVTIFCGYAFAGIVEKAGCLEVLLATISKGIHSVGSLICITVICCIALVFAAGVASIVIIMVGVLMKDLFEKYQVSRSVLSRTLEDSSTMVLPLIPWGTSGIYYTNQLHVSVGEFFIWTVPCYLCAIIAIIYGFTGIGIKKSSNSRLT
>NZ_CP029751.1|WP_041204333.1|2405955_2406198_-|hypothetical-protein
MTKLIENLKASIFVSTLTKNLSMYSRFDAPKFGCVNGCMLFILYYRVNRIGENRNFEIFTNSIFFIEIKKASKVIETLLA
>NZ_CP029751.1|WP_000717387.1|2405128_2405938_+|CHAP-domain-containing-protein
MKKIATATIATAGFATIAIASGNQAHASEQDNYGYNPNDPTSYSYTYTIDAQGNYHYTWKGNWHPSQLNQDNGYYSYYYYNGYNNYNYNNYNNGYSYNNYSRYNNYSNNNQSYNYNNYNSYNTNSYRTGGLGASYSTSSNNIQVTTTMAPSSNGRSISSGYTSGRNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAARAGYTVNNTPKAGAIMQTTQGAYGHVAYVESVNSNGSVRVSEMNYGYGPGVVTSRTISASQASSYNFIH
>NZ_CP029751.1|WP_000131814.1|2402562_2404518_-|helix-turn-helix-transcriptional-regulator
MTDNYSLHIFKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTVIMLNDLYQIDGHDDSVCCVVEVSAKTFLKFMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQPYNANDKIINYMCVELMSLNTYDDSRHLVAEEVHDYLTNNHHKKINRKDVINQVSITNKALSDMFKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGDTPKLIRKRYSPTSHSINHSQLVEIDKNIIELFDDTNQSSSSMREIDIPFEPTKRSQMYQPKNIYIKGSNFYWMDYYTIKQIIQRLGVNPENLHIIVTLDTSNELSIEQITLLLQKIVNYNVNVVFRIKHEYKELLTSTERGKIEKLVATIFNMTFESNRCKIAFLINDLNTTAIQKLKRLIDNYIGVFELIYHLEPNELNTRYDKEIDHLIDYFILPLRQIEQVSIARSKIICDVDLINENNDLKEKITIFDINKVTELLTNYTKFRGLIMHMSIISEASKEINLTRLSIFIFIINILNQLRGIVIYQNDTMIVTKFKHEVQCVICLPATLLNENSDAIRLSCKGLQQFSHAKTKQIVLSIDKDNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSNSIVHLKYHLEI
>NZ_CP029751.1|WP_000032850.1|2401793_2402537_-|transcriptional-regulator
MSKFKVKRLTAHILMLKVINDMLKYSFHLTLTQVKLLNLLVKYDNSDSNSASIDRLLKMKEIQSKMALLQMLSYLNNHQWLLKGRDQRDQRKLTISINKMHIDKIEYMNNELSDYIERYFGQYTFDFSCDYVSYLLSSQELLRNLKRYLNMCQLSLEELYVLGILNLHKGKLTVKELQGEFHHPIFAVSPILKCLISKGLVKKERCELDERRVIVTIKREKFSKVTMLIQACYNYLEKGIQVKLNNK
>NZ_CP029751.1|WP_000739218.1|2413519_2414296_-|glucosaminidase-domain-containing-protein
MKKNFKLRISTLLLIVILVVFAILLIVNETKLFKNDVNYSFDEAVSMQQGKGIVQTKEEDGKFVEANNNEIAKAMTISHKDNDMKYMDITEKVPMSESEVNQLLKGKGILENRGKVFLEAQEKYEVNVIYLVSHALVETGNGKSELAKGIKDGKKRYYNFFGIGAFDSSAVRSGKSYAEKEQWTSPDKAILGGAKFIRNEYFENNQLNLYQMRWNPENPAQHQYASDIRWADKIAKLMDKSYKQFGIKKDDIRQTYYK
>NZ_CP029751.1|WP_000921246.1|2414317_2414551_-|hypothetical-protein
MLKTSAVISNTLLVIGLVCLFMMKLVLAITFFAVSLSISLVVFNMMFRDRTTMKVIVNASFLIVILAIVVAYFLLSK
>NZ_CP029751.1|WP_000840815.1|2414845_2415319_-|DUF1641-domain-containing-protein
MAERISSKIRRLEKSEEQIKLESLNEVTEAIAANKDSILKAIKLIKVLDDAKILDALNGAVRGRQVIINKFAVELNKDIYTGLLTNMASMVFLLGELNVSDLSDFLNKVNKGLHVANQASPNAKTSVRSLLGVLKDDDMNRSLTYMLNMLKGMSRED
>NZ_CP029751.1|WP_001155283.1|2415318_2418273_-|formate-dehydrogenase-subunit-alpha
MQEHLVVTLDGKDYLVEPGTNLLEFIKSQDTFVPSICYNESMGPIQTCDTCTVEIDGKIERSCSTVIDRPMTVNTVNNDVKDAQKEALDRILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWDNDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGYMTDTEPGSLAAMIDLTKKAEPGYGPLFAISDSEAEMRKERIKKTKTVCTYCGVGCSFEVWTKDREILKVQPSHDSPANKIATCVKGKFSWGHINSDQRLTKPLVRKNGEFHEVEWDEALNVIADNFTSIKEKYGPDALSFISSSKATNEESYLMQKLARQVIGTNNVDNCSRYCQAPATKGLFRTVGHGGDSGSIEDLEKAAMSVLIGTNTAEAHPVIASRMKRAQKLFGQKIHVFDIRKHEMAERADRFYQPKPGTDLAWLSAVTKYIIDHDLHDKAFIEEWVEDFDEYYKSLETFTMAFAEEATGIPEAELIKFAEECAKAESVVICWAMGITQQDIGSDSSTAISNLLLVTGNYRRPGTGAYPLRGHNNVQGCSDMGSMPDKITGYQSIEADDIRAKFEKEYGVKLNPKVGKDNHEMVEGVHDGEIHSLYLYGEDTGIVDSNINFVQAAFEKLDFMVVQDEFLTFTATFADVVLPASPSLEKDGTFTNTERRIQRLYQALKPLGDSKPDWKIFQAIANKLGFDWNYKHPSEIMDEIARLTPLYAGVSYERLEGFNSLQWPVHPDGTDEPILYLEGFNFDNGKAKLFPLSFDNYFKQDEVYDIHVNNGRLLEHFHEGNMTYQTPMIKYKVPRAFVEISPELAEDRGIHEGAEVKLISETGEAVLQVHVTDRVKGKEIYIPLNNDAMENGDLGAINLLTNSDVDQYTDTPSYKRTSCRLEVITKRGKSPLNPNNFRVNKKRHPQYSVQVQKKWERPDYVFPGNQVDK
>NZ_CP029751.1|WP_000831055.1|2418876_2419824_-|LCP-family-protein
MKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPSSITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE
>NZ_CP029751.1|WP_000130470.1|2419946_2420744_-|inositol-monophosphatase
MTDKTLQQIDKLICSWLKQIDNVIPQLITEMTTETKRHRFDLVTNVDKQIQQQFQQFLATHFPEHQLLAEEKSNEMITNEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEEPPSLKLEDAIISFNAQVMNLDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVLKILNANGGYQKYR
>NZ_CP029751.1|WP_001030128.1|2421127_2421820_+|YafY-family-transcriptional-regulator
MNKAERQNLIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYTHYGKNGGYQIQQAQSKIALNLSETQLSALFLVLNESQSYSTLPYKSEINAIIKQCLSLPQTRLRKLLKRMDFYIKFDDTQHMTLPMLFSDILIYCTERNVMLVDHRVDDNIKAENVIFIGLLCKHGHWHAVIYDIAQDKTAELEIENIIDISYSFGKTIQTRDISIDNYHQFLNPIDS
>NZ_CP029751.1|WP_000426707.1|2421844_2422582_-|CPBP-family-intramembrane-metalloprotease-SdpB
MENEKKKYTFKDIAWRDLLIIPIIGVLLFALNIAAYIGPILFDYYEIDSNLIFVATITQTLAYTIGIGAFYLFHLKVMPSRLRAGFAYIKKYWLRLSITYIIALILIYTYEYMTQFLPKHLQYSETANELGLNKMFEVPALLPVAFLLIVIVGPIVEEIVFRHILIGELGKKFNFIAMSIVSVFLFAFIHVTDAKSPFEFGPYLILSIILVFTYLKSGRNLGSTIALHIANNFVSFVISVISIYA
>NZ_CP029751.1|WP_000606719.1|2422630_2422960_+|hypothetical-protein
MINETKYMGQQITNLIQIIDTIKYNTLMTDWNIQTHIYKFNQIVTNELNKFKGFETSYIINENQVSYYEIITLLNKHPLRQVDYGNKIQYLNFYHTELSNALFAIKFAH
>NZ_CP029751.1|WP_000073195.1|2423404_2424277_+|MurR/RpiR-family-transcriptional-regulator
MSNVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSKKITDGGFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDKTIDQICHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSNDSVILITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHMGATTSLFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYRKHLSNINFKH

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Crispr_ID: NZ_CP029751_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029751_7

2516873-2516955

Orphan

Consensus_repeat	Method
GCCAGCTTACAATAATGTGAAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029751_7

>merge|NZ_CP029751|7|2516873-2516955|CRISPRCasFinder
GCCAGCTTACAATAATGTGAAAGTTGGCGGGGCCCCAACACAGAAGCTGACGGAAAGCCAGCTTACAATAATGTGCAAGTTGG

>NZ_CP029751|7|7|2516873-2516955|CRISPRCasFinder
GCCAGCTTACAATAATGTGAAAGTTGG	CGGGGCCCCAACACAGAAGCTGACGGAAA
GCCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029751.1\|WP_000185901.1\|2516018_2516555_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP029751.1\|WP_000079139.1\|2518047_2518230_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000186933.1\|2504046_2504499_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|376570
NZ_CP029751.1\|WP_000934157.1\|2504518_2505196_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP029751.1\|WP_000692645.1\|2505756_2507316_-\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP029751.1\|WP_001014075.1\|2515022_2515790_-\|sirohydrochlorin-chelatase	unknown	unknown	gnl\|CDD\|225049
NZ_CP029751.1\|WP_000109711.1\|2511303_2512281_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|273643
NZ_CP029751.1\|WP_000594635.1\|2517020_2517845_-\|formate/nitrite-transporter-family-protein	unknown	unknown	gnl\|CDD\|225027
NZ_CP029751.1\|WP_000448222.1\|2512271_2512586_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239606
NZ_CP029751.1\|WP_000606768.1\|2505188_2505764_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|225091
NZ_CP029751.1\|WP_001012239.1\|2522835_2524086_+\|FemA/FemB-family-glycyltransferase-FmhA	unknown	unknown	gnl\|CDD\|367067
NZ_CP029751.1\|WP_000153341.1\|2518316_2518784_-\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|226353
NZ_CP029751.1\|WP_000584500.1\|2521077_2521329_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_CP029751.1\|WP_000727763.1\|2518969_2520520_-\|zinc-ABC-transporter-substrate-binding-lipoprotein-AdcA	unknown	unknown	gnl\|CDD\|370371
NZ_CP029751.1\|WP_000162810.1\|2521600_2522200_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|224565
NZ_CP029751.1\|WP_001118717.1\|2512589_2514995_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_CP029751.1\|WP_000615461.1\|2524182_2524914_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP029751.1\|WP_000819843.1\|2522218_2522581_-\|DUF4467-domain-containing-protein	unknown	unknown	gnl\|CDD\|291399
NZ_CP029751.1\|WP_000479576.1\|2524910_2525630_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP029751.1\|WP_000514385.1\|2507305_2510995_-\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346

Protein	Function_ID	Function_description	E-value
NZ_CP029751.1\|WP_000185901.1\|2516018_2516555_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51311e-08
NZ_CP029751.1\|WP_000186933.1\|2504046_2504499_-\|GAF-domain-containing-protein	gnl\|CDD\|376570	pfam01590, GAF, GAF domain. This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.	9.51589e-08
NZ_CP029751.1\|WP_000934157.1\|2504518_2505196_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	2.97942e-109
NZ_CP029751.1\|WP_000692645.1\|2505756_2507316_-\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP029751.1\|WP_001014075.1\|2515022_2515790_-\|sirohydrochlorin-chelatase	gnl\|CDD\|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	6.85322e-68
NZ_CP029751.1\|WP_000109711.1\|2511303_2512281_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|273643	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	3.34285e-120
NZ_CP029751.1\|WP_000594635.1\|2517020_2517845_-\|formate/nitrite-transporter-family-protein	gnl\|CDD\|225027	COG2116, FocA, Formate/nitrite family of transporters [Inorganic ion transport and metabolism].	2.63308e-75
NZ_CP029751.1\|WP_000448222.1\|2512271_2512586_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	3.72601e-50
NZ_CP029751.1\|WP_000606768.1\|2505188_2505764_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	1.19436e-65
NZ_CP029751.1\|WP_001012239.1\|2522835_2524086_+\|FemA/FemB-family-glycyltransferase-FmhA	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
NZ_CP029751.1\|WP_000153341.1\|2518316_2518784_-\|SRPBCC-domain-containing-protein	gnl\|CDD\|226353	COG3832, COG3832, Uncharacterized conserved protein [Function unknown].	1.03094e-32
NZ_CP029751.1\|WP_000584500.1\|2521077_2521329_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.92097e-21
NZ_CP029751.1\|WP_000727763.1\|2518969_2520520_-\|zinc-ABC-transporter-substrate-binding-lipoprotein-AdcA	gnl\|CDD\|370371	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment. ZinT plays a critical role in recruiting periplasmic zinc to the bacterial zinc-uptake complex ZnuABC, consisting of families pfam01297,pfam00950, pfam00005, regulated by the transcription-regulator FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), pfam01297. Members of this family of prokaryotic domains were first identified as part of the response of bacteria to a challenge with the toxic heavy metal cadmium. They are able to bind to cadmium, and ensure its subsequent elimination.	5.48278e-102
NZ_CP029751.1\|WP_000162810.1\|2521600_2522200_-\|DsbA-family-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	1.74649e-30
NZ_CP029751.1\|WP_001118717.1\|2512589_2514995_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NZ_CP029751.1\|WP_000615461.1\|2524182_2524914_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.20826e-144
NZ_CP029751.1\|WP_000819843.1\|2522218_2522581_-\|DUF4467-domain-containing-protein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	3.11961e-31
NZ_CP029751.1\|WP_000479576.1\|2524910_2525630_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.98247e-78
NZ_CP029751.1\|WP_000514385.1\|2507305_2510995_-\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0

>NZ_CP029751.1|WP_000185901.1|2516018_2516555_-|GNAT-family-N-acetyltransferase
MTNTTIRLANENDAETLQQLMYKAFTPLRELGIDWPSVNANLDAVKENIDKNTTFVMTIDDEIISTITVRYPWGSVKSISGYPFVWWFATNPEYEGKGYGSQLLTYVEEAFLRDTLKSAAVTLGTSARLHPWLLKIYEKRGYEIYSEHENDDGDLGVIMRKVLIPERFDETILGQPPF
>NZ_CP029751.1|WP_001014075.1|2515022_2515790_-|sirohydrochlorin-chelatase
MNGNIIVAHGMRHGRQNQALLAFISELVKDDIHHYDIAFLESEHQDLETVMTTLVQSGVDHFKIVPLLIFSAMHYLKDIPDIVHEMKRRYPDIKVEVSEPLGTHPLMRRLIEQRICDALAGDEQQVGAMVVAHGNINGKFTKAHEELQICAQNLRISKPTYARTLYGEISFTHDLEIISKRYQKLIVVPLFLYDGRLVNKVKQQMNNMVINPDIHITPSINFDPILKQIINDRLESLNDSNENIKAQTKIKTFLK
>NZ_CP029751.1|WP_001118717.1|2512589_2514995_-|NAD(P)/FAD-dependent-oxidoreductase
MAKQKLVMIGNGMAGIRTIEEILERANDLYDITVIGKEPYPNYNRIMLSNILQNKMTVEETIMNPYEWYEEHGIELITNDPVIEVDRANQSVTTANGIEVSYDKLIFATGSKAFVIPVPGSTLPSVIGWRTIDDTEQMMNIAKTKKKAIVIGGGLLGLECARGLLDQGMEVTVLHLAEWLMEMQLDRKAGNMLKADLEKQGMKFEMQANTTEILGEDDVEGVKLADGREIPADLVVMAVGIRPYTEVAKESGLDVNRGIVVNDVMQTSDSNIYAVGECAEHNGKVYGLVAPLYEQGKVLADHLTNKETNGYKGSTTFTSLKVSGCDLYSAGQIVENAEIKGIEIFNSVDNNYKKIFLKDGNVVGAVLYGDIDDGSRFYNMMKKGESTEDYTLVSLLTKGGEEASLSIADMADDETICGCNGVDKGTIVNAITENGFTTVEEVTAKTKAGNSCGKCKPQIAQILQHTLGDDFVAAKPAGICGCTDLTRDQIVTQIRAKGLKTSKEVRHVLNFKNKGGCPKCRPAINYYLNMVYPHDHEDERESRFANERYHANIQNDGTFSVIPQMRGGVTDADQLIRLGEVAKKYHVPLVKVTGSQRVGLYGVKKEELPNIWEDLGMRSASAYGKKTRSVKSCVGKEFCRFGTQYTTRLGIRLEKTFEYIDTPHKFKMGVSGCPRSCVESGVKDFGIISVENGFQIYIGGNGGTEVEKAEFLTTVETEDEVIKLCGALMQYYRETGIYAERTAPWLRRLGFENVKEVLLNPERQNELFERIMDAKKAVEAEPWEAITSNAQARKIFEVEKV
>NZ_CP029751.1|WP_000448222.1|2512271_2512586_-|nitrite-reductase-small-subunit-NirD
METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGKIHAIHNICPHKQGPLSEGTVSGEYVFCPLHDQKIDLNTGIVQEPDEGCVDVYEVEVTDGNVYICL
>NZ_CP029751.1|WP_000109711.1|2511303_2512281_-|uroporphyrinogen-III-C-methyltransferase
MSVDEYGKVYLIGAGPGNPNYLTKKAERLIREADVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNKVVRLKGGDPAIFGRVQEEVDTLNEHHIAFEIVPGVTSASAAVATMQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVNGGTLAIYMGVKRLGKIITQIQQYTDIDYPIAIVFQASCFNEFVVKGRLSNIISKLQHYSIEAKPGICIIGEVVGYTENTPKSYDPAKQFYVVSGSKHDALMLCEHLYDEGYGCLLNPNDTSNGTYHSSQYDYYDAFIKQQENVTYISTNRADVNTVLCH
>NZ_CP029751.1|WP_000514385.1|2507305_2510995_-|nitrate-reductase-subunit-alpha
MGKFGLNFFKPTEKFNGNWSILESKSREWEKMYRERWSHDKEVRTTHGVNCTGSCSWKVFVKNGVITWENQQTDYPSCGPDMPEYEPRGCPRGASFSWYEYSPLRIKYPYIRGKLWDLWTEALEENNGNRVAAWASIVENEDKAKQYKQARGMGGHVRSNWKDVTEIIAAQLLYTIKKYGPDRIAGFTPIPAMSMISYAAGARFINLLGGEMLSFYDWYADLPPASPQIWGEQTDVPESSDWYNASYIIMWGSNVPLTRTPDAHFMTEVRYKGTKVISVAPDYAENVKFADNWLAPNPGSDAAIAQAMTHVILQEHYVNQPNERFINYAKQYTDMPFIIMLDEDENGYKAGRFLRASDLGQTTEQGEWKPVIHDAISDSLVVPNGTMGQRWEEGKKWNLKLETEDGSKINPTLSMTEGGYELETIQFPYFDSDGDGIFNRPIPTRQVTLANGDKVRIATIFDLMASQYGVRRFDHKLESKGYDDAESKYTPAWQEAISGVKQSVVIQVAKEFAQNAIDTEGRSMIIMGAGINHWFNSDTIYRSILNLVMLCGCQGVNGGGWAHYVGQEKCRPIEGWSTVAFAKDWQGPPRLQNGTSWFYFATDQWKYEESNVDRLKSPLAKTEELKHQHPADYNVLAARLGWLPSYPQFNKNSLLFAEEAKDEGIESNEAILKRAIDEVKSKQTQFAIEDPDLKKNHPKSLFIWRSNLISSSAKGQEYFMKHLLGTKSGLLATPNEDEKPEEITWREETTGKLDLVVSLDFRMTATPLYSDIVLPAATWYEKHDLSSTDMHPYVHPFNPAIDPLWESRSDWDIYKTLAKAFSEMAKDYLPGTFKDVVTTPLSHDTKQEISTPYGVVKDWSKGEIEAVPGRTMPNFAIVERDYTKIYDKYVTLGPVLEKGKVGAHGVSFGVSEQYEELKSMLGTWSDTNDDSVRANRPRIDTARNVADAILSISSATNGKLSQKSYEDLEEQTGMPLKDISSERAAEKISFLNITSQPREVIPTAVFPGSNKQGRRYSPFTTNIERLVPFRTLTGRQSYYVDHEVFQQFGESLPVYKPTLPPMVFGNRDKKIKGGTDALVLRYLTPHGKWNIHSMYQDNKHMLTLFRGGPTVWISNEDAEKHDIQDNDWLEVYNRNGVVTARAVISHRMPKGTMFMYHAQDKHIQTPGSEITDTRGGSHNAPTRIHLKPTQLVGGYAQISYHFNYYGPIGNQRDLYVAVRKMKEVNWLED
>NZ_CP029751.1|WP_000692645.1|2505756_2507316_-|nitrate-reductase-subunit-beta
MKIKAQVAMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNVETKPGVGYPKRWEDQEHYKGGWVLNRKGKLELKSGSRISKIALGKIFYNPDMPLIKDYYEPWNYNYEHLTTAKSGKHSPVARAYSEITGDNIEIEWGPNWEDDLAGGHVTGPKDPNIQKIEEDIKFQFDETFMMYLPRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFNWKTNKAEKCTFCFPRIEAGMPTVCSETCTGRMRYLGVLLYDADRVHEAASAVDEKDLYEKQLDIFLNPFDEEVIAQAEKDGIGYDWIEAAQNSPIYKLAIEYKLAFPLHPEFRTMPMVWYCPPLSPIMSYFEGKNTTQNPDAIFPAIEEMRLPIEYLANIFTAGDTEPVKGALQRMAMMRSYMRSQVTQQPFDTSRLERLGITERQTKDMYRLLGLAKYEDRFVIPTSHKETYLDTYHAQGSTGYNYGGEHFGDNCEGCGVAVGSGKTGQEIYNENFYGGIFRD
>NZ_CP029751.1|WP_000606768.1|2505188_2505764_-|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MINFDNFKKYQESFGYMAQQLCFPEKLTFHPKTFEETISKDHPAYEDLVAFRNVMMTFSLSEIKAIYTDTFDFTKKAPLYMTYNKFDTQKERGQMLAKLKVLYEMFGLEMVDNELSDYLPLMLQFLQVAEWRNDPRAEENIQLIIMIIEDGTYVMANALGEDNNPYAYVIQALRKTLKLCLTSPKGVKHHA
>NZ_CP029751.1|WP_000934157.1|2504518_2505196_-|respiratory-nitrate-reductase-subunit-gamma
MLNQFLWVIFPYLCLVVFVAGHIARYRYDKFSWTAKSSELIERKRLMWGSLLFHLGIIPVFSGHVVGLLIPKSWMDAVGVSEHLYHIGAVYIGSIFGIITLVGMFLLTARRVTTKSIRRLSSASDIFVNFLLLLIVFMGCYATLVTNIQHPDFNYRTSLSIWFRQLFMLKPDASLMSGVPIAFKMHILLGFTIMACWPFTRLVHVWSVPLTYINRRYIIYRKNKV
>NZ_CP029751.1|WP_000186933.1|2504046_2504499_-|GAF-domain-containing-protein
MTPEAIIEDRRFQETLDKIRKEEGYDFAAIAFYESNKPSSPIKWHYVSGNKNNRFKLIILRKGRGLAGTVMKTGKRMVIANVGLALGPEEKIDYPILLSESLTAVLAVPLWYKNQVYGVLLFGQRDGRPLPKIFDNDDIQRKFGIFNDDK
>NZ_CP029751.1|WP_000594635.1|2517020_2517845_-|formate/nitrite-transporter-family-protein
MIKNNKTVEDTYSTKAIVDSISSSVQMKQVMVQQTPGRYMLKSMMAGFLLSIVTVFMFGIKTQFASTHVDGLINLMGAIAFSLGLVLVVLTNSELLTSNFMYFTVGWYYKVVSLNKMMWILLYCFLGNILGGFVLFFLIKYAHVMTPEMTQALTALVQKKTVDSTWLNIFTKGIFCNFFINIGIFISMQFKGGLTKAFFIACGVIVFVYMGYEHVVFNAGLYAGMVFFNLDAVSWLHVVKNIVFAFLGNFVGGGIFVGLVYAFLNGKRNRLEQQ
>NZ_CP029751.1|WP_000079139.1|2518047_2518230_-|hypothetical-protein
MAQRYIKVLILYIFTTLLSSITVTSKCVPNKVIRFILRTVVGYGIFAYGLHYFSNLKKNK
>NZ_CP029751.1|WP_000153341.1|2518316_2518784_-|SRPBCC-domain-containing-protein
MTIKVEDNKIIFSRTIEAPIEKVFDAYTTKALFEKWFHPKDASTKVFRFNAVSGGDAFYAIKTPTMTSYTLAEYKTVKRPYLIEYIDSFATPQGAKDTKMPSMKITLSFSEFNTTKTTVTSTSVFPTKEAAQQVINMGVEQGMNQTLDQLDTLLK
>NZ_CP029751.1|WP_000727763.1|2518969_2520520_-|zinc-ABC-transporter-substrate-binding-lipoprotein-AdcA
MKKKLGMLLLVPAVTLSLAACGNDDGKDKDGKVTIKTTVYPLQSFAEQIGGKHVKVSSIYPAGTDLHSYEPTQKDILSASKSDLFMYTGDNLDPVAKKVASTIKDKDKKLSLEDKLDKAKLLTDQHEHGEEHEHEGHDHEKEEHHHHHGGYDPHVWLDPKINQTFAKEIKDELVKKDPKHKDDYEKNYKKLNDDLKKIDNDMKQVTKDKQGNAVFISHESIGYLADRYGFVQKGIQNMNAEDPSQKELTKIVKEIRDSNAKYILYEDNVANKVTETIRKETDAKPLKFYNMESLNKEQQKKDNITYQSLMKSNIENIGKALDSGVKVKDDKAESKHDKAISDGYFKDEQVKDRELSDYAGEWQSVYPYLKDGTLDEVMEHKAENDPKKSAKDLKAYYDKGYKTDITNIDIKGNEITFTKDGKKHTGKYEYNGKKTLKYPKGNRGVRFMFKLVDGNDKDLPKFIQFSDHNIAPKKAEHFHIFMGNDNDALLKEMDNWPTYYPSKLNKDQIKEEMLAH
>NZ_CP029751.1|WP_000584500.1|2521077_2521329_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTVTKDIDV
>NZ_CP029751.1|WP_000162810.1|2521600_2522200_-|DsbA-family-protein
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK
>NZ_CP029751.1|WP_000819843.1|2522218_2522581_-|DUF4467-domain-containing-protein
MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN
>NZ_CP029751.1|WP_001012239.1|2522835_2524086_+|FemA/FemB-family-glycyltransferase-FmhA
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKQNCLYVLVDPYLIENLRNADGEIVKSYDNRAFVRTMDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALEESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESSEDYGVQQFKKGFNAHVEEYIGDFIKPIKPLLYKVQTYLNHKRR
>NZ_CP029751.1|WP_000615461.1|2524182_2524914_-|amino-acid-ABC-transporter-ATP-binding-protein
MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVINEE
>NZ_CP029751.1|WP_000479576.1|2524910_2525630_-|amino-acid-ABC-transporter-permease
MFLNLNSEQQHALDAAKQAFGPMLEGLVKYSIPITLVTFVLGLIIALFTALMRISTSKILRSISRVYVSIIRGTPMIVQLFIIFYGIPELGRLLTNDADNQWTLAPVVAAIIGLSLNVGAYASEIIRGGIISIPKGQTEAAYSIGMTYGQTIQRIILPQAIRVSIPALGNTFLSLIKDTSLLGFILVAEMFRKAQEVASTTYEYLTIYVLVALMYWVVCFIISIIQGIYESYIERGYRS

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Crispr_ID: NZ_CP029751_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029751_8

2863877-2863962

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029751_8

>merge|NZ_CP029751|8|2863877-2863962|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>NZ_CP029751|8|8|2863877-2863962|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029751.1\|WP_000362509.1\|2867807_2869187_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_CP029751.1\|WP_000742837.1\|2864262_2865102_-\|nucleoid-occlusion-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP029751.1\|WP_001059079.1\|2861680_2861881_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP029751.1\|WP_000143660.1\|2857372_2859253_+\|peptide-resistance-ABC-transporter-permease-subunit-VraE	unknown	unknown	gnl\|CDD\|376899
NZ_CP029751.1\|WP_001054124.1\|2862007_2862577_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP029751.1\|WP_000046621.1\|2865863_2867741_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP029751.1\|WP_000240855.1\|2869803_2869941_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP029751.1\|WP_000215592.1\|2865144_2865864_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP029751.1\|WP_000672029.1\|2861097_2861289_+\|peptide-resistance-ABC-transporter-activity-modulator-VraH	unknown	unknown	unknown
NZ_CP029751.1\|WP_000779134.1\|2862836_2863232_-\|DUF3147-family-protein	unknown	unknown	gnl\|CDD\|288237
NZ_CP029751.1\|WP_001803755.1\|2869329_2869683_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234782
NZ_CP029751.1\|WP_000491379.1\|2863299_2863653_-\|DUF3147-family-protein	unknown	unknown	gnl\|CDD\|288237
NZ_CP029751.1\|WP_000410773.1\|2855822_2856335_-\|HdeD-family-acid-resistance-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP029751.1\|WP_000586237.1\|2860143_2860641_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029751.1\|WP_000154162.1\|2856624_2857383_+\|peptide-resistance-ABC-transporter-ATP-binding-subunit-VraD	unknown	unknown	gnl\|CDD\|224059
NZ_CP029751.1\|WP_000672138.1\|2859345_2859537_+\|peptide-resistance-ABC-transporter-activity-modulator-VraH	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029751.1\|WP_000362509.1\|2867807_2869187_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_CP029751.1\|WP_000742837.1\|2864262_2865102_-\|nucleoid-occlusion-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.327e-113
NZ_CP029751.1\|WP_001059079.1\|2861680_2861881_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.4289e-30
NZ_CP029751.1\|WP_000143660.1\|2857372_2859253_+\|peptide-resistance-ABC-transporter-permease-subunit-VraE	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	3.20442e-06
NZ_CP029751.1\|WP_001054124.1\|2862007_2862577_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.22177e-16
NZ_CP029751.1\|WP_000215592.1\|2865144_2865864_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	7.23166e-95
NZ_CP029751.1\|WP_000240855.1\|2869803_2869941_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	8.39798e-10
NZ_CP029751.1\|WP_000046621.1\|2865863_2867741_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP029751.1\|WP_000779134.1\|2862836_2863232_-\|DUF3147-family-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	5.93989e-39
NZ_CP029751.1\|WP_001803755.1\|2869329_2869683_-\|ribonuclease-P-protein-component	gnl\|CDD\|234782	PRK00499, rnpA, ribonuclease P; Reviewed.	6.39448e-51
NZ_CP029751.1\|WP_000491379.1\|2863299_2863653_-\|DUF3147-family-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	5.87211e-38
NZ_CP029751.1\|WP_000410773.1\|2855822_2856335_-\|HdeD-family-acid-resistance-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	3.30661e-22
NZ_CP029751.1\|WP_000154162.1\|2856624_2857383_+\|peptide-resistance-ABC-transporter-ATP-binding-subunit-VraD	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.13228e-111

>NZ_CP029751.1|WP_000491379.1|2863299_2863653_-|DUF3147-family-protein
MFSIGSAILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFLAAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLASLYIKHKGYRKGAIFTVVCWFVISLAIFSIRHL
>NZ_CP029751.1|WP_000779134.1|2862836_2863232_-|DUF3147-family-protein
MKLTLMKFFVGGFAVLLSYIVSVTLPWKEFGGIFATFPAVFLVSMFITGMQYGDKVAVHVSRGAVFGMTGVLVCILVTWMMLHMTHMWLISIIVGFLSWFISAVCIFEAVEFIAQKRLEKHSWKAGKSNSK
>NZ_CP029751.1|WP_001054124.1|2862007_2862577_-|helix-turn-helix-transcriptional-regulator
MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDDLVKGTIPFVPDIKVQRSLNLWAYVMLIFMTLAAILTGPLIVYWNWAWGITVMVIYGIGYYASMKIEDFKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNIKTGVLSFIAFVGAIILIALISMYLANKFL
>NZ_CP029751.1|WP_001059079.1|2861680_2861881_+|cold-shock-protein
MNNGTVKWFNAEKGFGFIEQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQRGDQAVNVQTV
>NZ_CP029751.1|WP_000672029.1|2861097_2861289_+|peptide-resistance-ABC-transporter-activity-modulator-VraH
MKFRELVKQSYEDLKNLTVTWYNVIALAMIVIVLSTITTPIIGIPVGLLGGAYYLKRREEKGK
>NZ_CP029751.1|WP_000586237.1|2860143_2860641_-|hypothetical-protein
MIINLETQQIHFDLEHETPYFQSPEKNRIRLDIDVLNKKQISNIINVIFNNQSKTKCTFLSEYLYPVKFREKTRIGRFFNITNWYEEIHSTDEKYVIATIKNIKNKDIIDYSLYIKKGLVEPFIVFYNQENIFYISNAVIDIISVSKDTLGYIKSEFNDHCASPY
>NZ_CP029751.1|WP_000672138.1|2859345_2859537_+|peptide-resistance-ABC-transporter-activity-modulator-VraH
MKFRKLVKQSYEDLKDLTVTWYNVIALAMIVIVLSTVTTPIIGIPVGLLGGAYYLKRREEKGK
>NZ_CP029751.1|WP_000143660.1|2857372_2859253_+|peptide-resistance-ABC-transporter-permease-subunit-VraE
MTFNHIVFKNLRQNLKHYAMYLFSLFFSIVLYFSFTTLQFTKGVNNDDSMAIIKKGALVGSIFLFIIIVIFLMYANHLFVKRRTREFALFQLIGLTRQNILKMLALEQMIVFLITGVVGVLCGIAGAQLLLSIVSKLMSLSINLSIHFEPMALVLTIFMLVIAYILILFQSSLFLKRRSILSMMKDSIKTDVTTAKVTTAEVISGVLGIAMIALGYYMATEMFGTFKALTMAMTSPFIILFLTVVGAYLFFRSSVSLIFKTLKKSKNGRVSITDVVFTSSIMYRMKKNAMSLTIIAIISAVTVTVLCFAALSKSNTDQTLTSMAPNEFNVVASQDAQKFESKLSQQHITFTKNYYETITVNNVKDQVITLENGSDSGRTNSILSANTKLTGNNAIITNTKSLPNIINIHLNKDLVVKGTKNETFRVTQEDKGKVYPLNLSFNSPVVEVSPEKYQQLKTQNNVHTFYGYDIKQTSQKEKAQAIAKQFGDKVITYDEMKKEVDATNGILIFVTSFLGLAFLVAAGCIIYIKQMDETEDELSNFRILKRIGFTHTDMLKGLLLKITFNFGLPLLIAILHAVFAAIAFMKLMGNISFMPVIIVIIVYTLIYIVFALIAFVHSNKLIKKTI
>NZ_CP029751.1|WP_000154162.1|2856624_2857383_+|peptide-resistance-ABC-transporter-ATP-binding-subunit-VraD
MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISSGSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATMEENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSANDLLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVHLQSVLGGVSNDI
>NZ_CP029751.1|WP_000410773.1|2855822_2856335_-|HdeD-family-acid-resistance-protein
MEKGNQGIKWSSLIMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIVYRRKVKALVGGNQNWILFMGIVDILFGLIVIFNVGASSAFFIYMFAFWFIFSSIAGLFTFSGSGSLKLISVIFNLLGIVFAVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDALD
>NZ_CP029751.1|WP_000742837.1|2864262_2865102_-|nucleoid-occlusion-protein
MKKPFSKLFGLKNKDDIIGHIEEDRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESIHEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENIQRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGKITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFAQDVTQARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
>NZ_CP029751.1|WP_000215592.1|2865144_2865864_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTVEWLAEQLKEHNIELTETQKQQFQTYYRLLVEWNEKMNLTSITDEHNVYLKHFYDSIAPSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNHLASELQLQDVSFIHDRAETFGKGVYRESYDVVIARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
>NZ_CP029751.1|WP_000046621.1|2865863_2867741_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MAQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQRVSD
>NZ_CP029751.1|WP_000362509.1|2867807_2869187_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
>NZ_CP029751.1|WP_001803755.1|2869329_2869683_-|ribonuclease-P-protein-component
MLLEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHMLAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKKIK
>NZ_CP029751.1|WP_000240855.1|2869803_2869941_-|50S-ribosomal-protein-L34
MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP029751_4	4.1\|2121785\|34\|NZ_CP029751\|CRISPRCasFinder	2121785-2121818	34	NZ_CP029751.1	975391-975424	0	1.0
NZ_CP029751_4	4.1\|2121785\|34\|NZ_CP029751\|CRISPRCasFinder	2121785-2121818	34	NZ_CP029751.1	1167985-1168018	0	1.0
NZ_CP029751_6	6.1\|2413196\|26\|NZ_CP029751\|CRISPRCasFinder	2413196-2413221	26	NZ_CP029751.1	845435-845460	0	1.0
NZ_CP029751_8	8.1\|2863907\|26\|NZ_CP029751\|CRISPRCasFinder	2863907-2863932	26	NZ_CP029751.1	1172069-1172094	0	1.0
NZ_CP029751_8	8.1\|2863907\|26\|NZ_CP029751\|CRISPRCasFinder	2863907-2863932	26	NZ_CP029751.1	1656314-1656339	0	1.0
NZ_CP029751_8	8.1\|2863907\|26\|NZ_CP029751\|CRISPRCasFinder	2863907-2863932	26	NZ_CP029751.1	2162953-2162978	0	1.0
NZ_CP029751_8	8.1\|2863907\|26\|NZ_CP029751\|CRISPRCasFinder	2863907-2863932	26	NZ_CP029751.1	2413140-2413165	0	1.0
NZ_CP029751_4	4.1\|2121785\|34\|NZ_CP029751\|CRISPRCasFinder	2121785-2121818	34	NZ_CP029751.1	889613-889646	1	0.971
NZ_CP029751_4	4.1\|2121785\|34\|NZ_CP029751\|CRISPRCasFinder	2121785-2121818	34	NZ_CP029751.1	402982-403015	1	0.971
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	NZ_CP029751.1	74185-74213	1	0.966
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	NZ_CP029751.1	2545782-2545810	1	0.966
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	NZ_CP029751.1	1172094-1172122	1	0.966
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	NZ_CP029751.1	1656339-1656367	1	0.966
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	NZ_CP029751.1	2413165-2413193	1	0.966
NZ_CP029751_6	6.1\|2413196\|26\|NZ_CP029751\|CRISPRCasFinder	2413196-2413221	26	NZ_CP029751.1	2015362-2015387	1	0.962
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	NZ_CP029751.1	845432-845460	1	0.966
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	NZ_CP029751.1	1675900-1675928	1	0.966
NZ_CP029751_8	8.1\|2863907\|26\|NZ_CP029751\|CRISPRCasFinder	2863907-2863932	26	NZ_CP029751.1	1675903-1675928	1	0.962
NZ_CP029751_3	3.2\|1847717\|29\|NZ_CP029751\|CRISPRCasFinder	1847717-1847745	29	NZ_CP029751.1	287813-287841	2	0.931
NZ_CP029751_3	3.2\|1847717\|29\|NZ_CP029751\|CRISPRCasFinder	1847717-1847745	29	NZ_CP029751.1	798627-798655	2	0.931
NZ_CP029751_3	3.2\|1847717\|29\|NZ_CP029751\|CRISPRCasFinder	1847717-1847745	29	NZ_CP029751.1	1256443-1256471	2	0.931
NZ_CP029751_3	3.2\|1847717\|29\|NZ_CP029751\|CRISPRCasFinder	1847717-1847745	29	NZ_CP029751.1	839776-839804	2	0.931
NZ_CP029751_3	3.2\|1847717\|29\|NZ_CP029751\|CRISPRCasFinder	1847717-1847745	29	NZ_CP029751.1	854454-854482	2	0.931
NZ_CP029751_3	3.2\|1847717\|29\|NZ_CP029751\|CRISPRCasFinder	1847717-1847745	29	NZ_CP029751.1	2016685-2016713	2	0.931
NZ_CP029751_3	3.2\|1847717\|29\|NZ_CP029751\|CRISPRCasFinder	1847717-1847745	29	NZ_CP029751.1	2863943-2863971	2	0.931
NZ_CP029751_4	4.1\|2121785\|34\|NZ_CP029751\|CRISPRCasFinder	2121785-2121818	34	NZ_CP029751.1	1378820-1378853	2	0.941
NZ_CP029751_4	4.1\|2121785\|34\|NZ_CP029751\|CRISPRCasFinder	2121785-2121818	34	NZ_CP029751.1	798560-798593	2	0.941
NZ_CP029751_4	4.1\|2121785\|34\|NZ_CP029751\|CRISPRCasFinder	2121785-2121818	34	NZ_CP029751.1	2114594-2114627	2	0.941
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	NZ_CP029751.1	287709-287737	2	0.931
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	NZ_CP029751.1	568294-568322	2	0.931
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	NZ_CP029751.1	1171980-1172008	2	0.931
NZ_CP029751_6	6.1\|2413196\|26\|NZ_CP029751\|CRISPRCasFinder	2413196-2413221	26	NZ_CP029751.1	287796-287821	2	0.923
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	NZ_CP029751.1	1172069-1172097	2	0.931
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	NZ_CP029751.1	1656314-1656342	2	0.931
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	NZ_CP029751.1	2015359-2015387	2	0.931
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	NZ_CP029751.1	2162953-2162981	2	0.931
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	NZ_CP029751.1	2298432-2298460	2	0.931
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	NZ_CP029751.1	2413140-2413168	2	0.931
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	NZ_CP029751.1	2545807-2545835	2	0.931
NZ_CP029751_8	8.1\|2863907\|26\|NZ_CP029751\|CRISPRCasFinder	2863907-2863932	26	NZ_CP029751.1	808180-808205	2	0.923
NZ_CP029751_8	8.1\|2863907\|26\|NZ_CP029751\|CRISPRCasFinder	2863907-2863932	26	NZ_CP029751.1	2545810-2545835	2	0.923

1. spacer 4.1|2121785|34|NZ_CP029751|CRISPRCasFinder matches to position: 975391-975424, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

2. spacer 4.1|2121785|34|NZ_CP029751|CRISPRCasFinder matches to position: 1167985-1168018, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

3. spacer 6.1|2413196|26|NZ_CP029751|CRISPRCasFinder matches to position: 845435-845460, mismatch: 0, identity: 1.0

cggggccccaacacagaagctgacga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**************************

4. spacer 8.1|2863907|26|NZ_CP029751|CRISPRCasFinder matches to position: 1172069-1172094, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

5. spacer 8.1|2863907|26|NZ_CP029751|CRISPRCasFinder matches to position: 1656314-1656339, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

6. spacer 8.1|2863907|26|NZ_CP029751|CRISPRCasFinder matches to position: 2162953-2162978, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

7. spacer 8.1|2863907|26|NZ_CP029751|CRISPRCasFinder matches to position: 2413140-2413165, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

8. spacer 4.1|2121785|34|NZ_CP029751|CRISPRCasFinder matches to position: 889613-889646, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcggaattctctgtgttgg	Protospacer
******************.***************

9. spacer 4.1|2121785|34|NZ_CP029751|CRISPRCasFinder matches to position: 402982-403015, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctatgttgg	Protospacer
***************************.******

10. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to position: 74185-74213, mismatch: 1, identity: 0.966

aacttgcacattattgtaagctgtctttc	CRISPR spacer
aacttgcacattattgtaagctgactttc	Protospacer
*********************** *****

11. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to position: 2545782-2545810, mismatch: 1, identity: 0.966

aacttgcacattattgtaagctgtctttc	CRISPR spacer
aacttgcacattattgtaagctgactttc	Protospacer
*********************** *****

12. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to position: 1172094-1172122, mismatch: 1, identity: 0.966

aacttgcacattattgtaagctgtctttc	CRISPR spacer
aacttgcacattattgtaagctgactttc	Protospacer
*********************** *****

13. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to position: 1656339-1656367, mismatch: 1, identity: 0.966

aacttgcacattattgtaagctgtctttc	CRISPR spacer
aacttgcacattattgtaagctgactttc	Protospacer
*********************** *****

14. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to position: 2413165-2413193, mismatch: 1, identity: 0.966

aacttgcacattattgtaagctgtctttc	CRISPR spacer
aacttgcacattattgtaagctgactttc	Protospacer
*********************** *****

15. spacer 6.1|2413196|26|NZ_CP029751|CRISPRCasFinder matches to position: 2015362-2015387, mismatch: 1, identity: 0.962

cggggccccaacacagaagctgacga	CRISPR spacer
cggggcgccaacacagaagctgacga	Protospacer
****** *******************

16. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to position: 845432-845460, mismatch: 1, identity: 0.966

cggggccccaacacagaagctgacggaaa	CRISPR spacer
cggggccccaacacagaagctgacgaaaa	Protospacer
*************************.***

17. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to position: 1675900-1675928, mismatch: 1, identity: 0.966

cggggccccaacacagaagctgacggaaa	CRISPR spacer
cggggccccaacatagaagctgacggaaa	Protospacer
*************.***************

18. spacer 8.1|2863907|26|NZ_CP029751|CRISPRCasFinder matches to position: 1675903-1675928, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctatgttggggccccg	Protospacer
***.**********************

19. spacer 3.2|1847717|29|NZ_CP029751|CRISPRCasFinder matches to position: 287813-287841, mismatch: 2, identity: 0.931

catttttgtaagctgactttttgtcagct	CRISPR spacer
catttttgtaagctgacttttcgccagct	Protospacer
*********************.*.*****

20. spacer 3.2|1847717|29|NZ_CP029751|CRISPRCasFinder matches to position: 798627-798655, mismatch: 2, identity: 0.931

catttttgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ****************.*******

21. spacer 3.2|1847717|29|NZ_CP029751|CRISPRCasFinder matches to position: 1256443-1256471, mismatch: 2, identity: 0.931

catttttgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ****************.*******

22. spacer 3.2|1847717|29|NZ_CP029751|CRISPRCasFinder matches to position: 839776-839804, mismatch: 2, identity: 0.931

catttttgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ****************.*******

23. spacer 3.2|1847717|29|NZ_CP029751|CRISPRCasFinder matches to position: 854454-854482, mismatch: 2, identity: 0.931

catttttgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ****************.*******

24. spacer 3.2|1847717|29|NZ_CP029751|CRISPRCasFinder matches to position: 2016685-2016713, mismatch: 2, identity: 0.931

catttttgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ****************.*******

25. spacer 3.2|1847717|29|NZ_CP029751|CRISPRCasFinder matches to position: 2863943-2863971, mismatch: 2, identity: 0.931

catttttgtaagctgactttttgtcagct	CRISPR spacer
cattattgtaagctgacttttcgtcagct	Protospacer
**** ****************.*******

26. spacer 4.1|2121785|34|NZ_CP029751|CRISPRCasFinder matches to position: 1378820-1378853, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtgggatttcttttcgaaattctctgtgttgg	Protospacer
****.*.***************************

27. spacer 4.1|2121785|34|NZ_CP029751|CRISPRCasFinder matches to position: 798560-798593, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctcttttttgg	Protospacer
*************************** * ****

28. spacer 4.1|2121785|34|NZ_CP029751|CRISPRCasFinder matches to position: 2114594-2114627, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttttcgaatttcttttcgaaattctctgtgttgg	Protospacer
** * *****************************

29. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to position: 287709-287737, mismatch: 2, identity: 0.931

aacttgcacattattgtaagctgtctttc	CRISPR spacer
aactcgcacattattgtaagctgtatttc	Protospacer
****.******************* ****

30. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to position: 568294-568322, mismatch: 2, identity: 0.931

aacttgcacattattgtaagctgtctttc	CRISPR spacer
aacttgcacattattgtatgctgactttc	Protospacer
****************** **** *****

31. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to position: 1171980-1172008, mismatch: 2, identity: 0.931

aacttgcacattattgtaagctgtctttc	CRISPR spacer
aacttgcacattcttgtaagctgactttc	Protospacer
************ ********** *****

32. spacer 6.1|2413196|26|NZ_CP029751|CRISPRCasFinder matches to position: 287796-287821, mismatch: 2, identity: 0.923

cggggccccaacacagaagctgacga	CRISPR spacer
cggggccccaacatagaagctggcga	Protospacer
*************.********.***

33. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to position: 1172069-1172097, mismatch: 2, identity: 0.931

cggggccccaacacagaagctgacggaaa	CRISPR spacer
cggggccccaacatagaagctggcggaaa	Protospacer
*************.********.******

34. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to position: 1656314-1656342, mismatch: 2, identity: 0.931

cggggccccaacacagaagctgacggaaa	CRISPR spacer
cggggccccaacatagaagctggcggaaa	Protospacer
*************.********.******

35. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to position: 2015359-2015387, mismatch: 2, identity: 0.931

cggggccccaacacagaagctgacggaaa	CRISPR spacer
cggggcgccaacacagaagctgacgaaaa	Protospacer
****** ******************.***

36. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to position: 2162953-2162981, mismatch: 2, identity: 0.931

cggggccccaacacagaagctgacggaaa	CRISPR spacer
cggggccccaacatagaagctggcggaaa	Protospacer
*************.********.******

37. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to position: 2298432-2298460, mismatch: 2, identity: 0.931

cggggccccaacacagaagctgacggaaa	CRISPR spacer
cggggccccaacacagaagctggcgtaaa	Protospacer
**********************.** ***

38. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to position: 2413140-2413168, mismatch: 2, identity: 0.931

cggggccccaacacagaagctgacggaaa	CRISPR spacer
cggggccccaacatagaagctggcggaaa	Protospacer
*************.********.******

39. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to position: 2545807-2545835, mismatch: 2, identity: 0.931

cggggccccaacacagaagctgacggaaa	CRISPR spacer
cggggccccaacacagtagctggcggaaa	Protospacer
**************** *****.******

40. spacer 8.1|2863907|26|NZ_CP029751|CRISPRCasFinder matches to position: 808180-808205, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggtcccg	Protospacer
************.********.****

41. spacer 8.1|2863907|26|NZ_CP029751|CRISPRCasFinder matches to position: 2545810-2545835, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagctactgtgttggggccccg	Protospacer
********* **.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	MK448935	Streptococcus phage Javan424, complete genome	24853-24881	5	0.828
NZ_CP029751_5	5.1\|2378976\|29\|NZ_CP029751\|CRISPRCasFinder	2378976-2379004	29	MK448936	Streptococcus phage Javan426, complete genome	24853-24881	5	0.828
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	MN746332	Rauchvirus SR18, complete genome	26224-26252	7	0.759
NZ_CP029751_7	7.1\|2516900\|29\|NZ_CP029751\|CRISPRCasFinder	2516900-2516928	29	MK942064	Caulobacter phage Jess A, complete genome	26000-26028	7	0.759
NZ_CP029751_3	3.2\|1847717\|29\|NZ_CP029751\|CRISPRCasFinder	1847717-1847745	29	MN693250	Marine virus AFVG_25M507, complete genome	25082-25110	8	0.724

1. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to MK448935 (Streptococcus phage Javan424, complete genome) position: , mismatch: 5, identity: 0.828

aacttgcacattattgtaagctgtctttc	CRISPR spacer
attttggagattattgtaagctgtctttg	Protospacer
* .*** * *******************

2. spacer 5.1|2378976|29|NZ_CP029751|CRISPRCasFinder matches to MK448936 (Streptococcus phage Javan426, complete genome) position: , mismatch: 5, identity: 0.828

aacttgcacattattgtaagctgtctttc	CRISPR spacer
attttggagattattgtaagctgtctttg	Protospacer
* .*** * *******************

3. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to MN746332 (Rauchvirus SR18, complete genome) position: , mismatch: 7, identity: 0.759

cggggccccaacacagaagctgacggaaa	CRISPR spacer
caaggccccaagccagaagctgacgggcg	Protospacer
*..********  *************. .

4. spacer 7.1|2516900|29|NZ_CP029751|CRISPRCasFinder matches to MK942064 (Caulobacter phage Jess A, complete genome) position: , mismatch: 7, identity: 0.759

cggggccccaacacagaagctgacggaaa	CRISPR spacer
caaggccccaagccagaagctgacgggcg	Protospacer
*..********  *************. .

5. spacer 3.2|1847717|29|NZ_CP029751|CRISPRCasFinder matches to MN693250 (Marine virus AFVG_25M507, complete genome) position: , mismatch: 8, identity: 0.724

catttttgtaagctgactttttgtcagct	CRISPR spacer
ttgttttgaaagctgactttttgttgtgt	Protospacer
.  ***** ***************..  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

341963 : 383142

Staphylococcus_phage(82.61%)

capsid,integrase,terminase,holin,portal,tail,head,protease

attL 341853:341870|attR 383640:383657

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
341853:341870	attL	NA	NA	NA	NA
WP_000264185.1\|341963_343169_-\|integrase	site-specific integrase	A7YGM7	Staphylococcus_virus	2.9e-222	99.8
WP_001582614.1\|343362_344076_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A1X9H026	Staphylococcus_phage	2.5e-128	99.6
WP_000705240.1\|344155_344338_-	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
WP_000358214.1\|344407_345127_-	helix-turn-helix transcriptional regulator	Q8SDX2	Staphylococcus_phage	3.7e-132	99.6
WP_001198673.1\|345268_345487_+	helix-turn-helix transcriptional regulator	Q8SDX1	Staphylococcus_phage	2.9e-35	100.0
WP_001153965.1\|345501_345810_+	hypothetical protein	S4V9P0	Staphylococcus_phage	1.3e-49	100.0
WP_001148572.1\|345966_346764_+	phage antirepressor Ant	Q6R854	Staphylococcus_virus	1.1e-145	99.6
WP_000435360.1\|346776_347220_+	hypothetical protein	W5R971	Staphylococcus_phage	1.5e-75	100.0
WP_000939495.1\|347234_347375_+	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
WP_000772137.1\|347367_347577_-	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
WP_001148587.1\|347633_348383_+	phage antirepressor KilAC domain-containing protein	A0A1W6JPN2	Staphylococcus_phage	2.0e-136	99.6
WP_000435343.1\|348395_348656_+	hypothetical protein	A0A2I6PDT7	Staphylococcus_phage	3.5e-40	100.0
WP_001662405.1\|348675_348813_+	hypothetical protein	A0ZS11	Staphylococcus_virus	3.7e-17	97.8
WP_001294156.1\|348889_349129_+	hypothetical protein	A0ZS12	Staphylococcus_virus	2.9e-33	100.0
WP_001025595.1\|349455_349782_+	hypothetical protein	G4KNN2	Staphylococcus_phage	5.4e-54	100.0
WP_001037096.1\|349778_349997_+	hypothetical protein	A0A2I6PDV4	Staphylococcus_phage	1.5e-31	98.6
WP_001124198.1\|350026_350290_+	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
WP_000066014.1\|350301_350463_+	DUF1270 domain-containing protein	Q4ZAZ7	Staphylococcus_virus	9.5e-20	98.1
WP_000291090.1\|350554_350815_+	DUF1108 family protein	Q4ZDA1	Staphylococcus_virus	1.2e-43	100.0
WP_000815402.1\|350824_351046_+	DUF2483 family protein	B2ZYV2	Staphylococcus_phage	3.2e-34	100.0
WP_000134097.1\|351038_351827_+	ATP-binding protein	Q4ZBM5	Staphylococcus_phage	2.6e-142	100.0
WP_000704705.1\|351855_352407_+	single-stranded DNA-binding protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
WP_001199419.1\|352419_353085_+	hypothetical protein	Q4ZAZ0	Staphylococcus_virus	3.1e-125	99.5
WP_000240901.1\|353084_353864_+	AP2 domain-containing protein	A0A2H4J5K3	uncultured_Caudovirales_phage	7.3e-49	46.1
WP_000504982.1\|353835_354639_+	phage replisome organizer N-terminal domain-containing protein	A0A1X9H0K3	Staphylococcus_phage	7.9e-115	100.0
WP_000803047.1\|354648_355422_+	ATP-binding protein	A7TWN3	Staphylococcus_phage	2.5e-142	99.2
WP_000237153.1\|355415_355577_+	hypothetical protein	D2JGK6	Staphylococcus_phage	4.5e-22	100.0
WP_001123688.1\|355589_355811_+	DUF3269 family protein	Q9G021	Staphylococcus_phage	1.3e-35	100.0
WP_000049800.1\|355820_356225_+	DUF1064 domain-containing protein	A0A0H3U2R9	Staphylococcus_phage	1.1e-67	94.0
WP_001187243.1\|356229_356415_+	DUF3113 family protein	A0A0F6N3K7	Staphylococcus_phage	1.1e-27	100.0
WP_000101252.1\|356415_356721_+	hypothetical protein	A0A0F6N4H9	Staphylococcus_phage	1.7e-49	100.0
WP_000029393.1\|356848_357208_+	hypothetical protein	B2ZYW3	Staphylococcus_phage	8.0e-59	97.5
WP_001126838.1\|357208_357457_+	hypothetical protein	A0A1W6JPX8	Staphylococcus_phage	7.2e-43	98.8
WP_001105610.1\|357471_357837_+	hypothetical protein	A7YGS3	Staphylococcus_virus	2.4e-58	94.2
WP_001065129.1\|357829_358078_+	DUF1024 family protein	Q9B0F3	Staphylococcus_virus	5.9e-37	96.3
WP_000185680.1\|358070_358607_+	dUTP diphosphatase	A0A1P8L6E0	Staphylococcus_phage	2.1e-95	100.0
WP_001282074.1\|358643_358889_+	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
WP_000195787.1\|358885_359122_+	DUF1381 domain-containing protein	M1T303	Staphylococcus_phage	9.0e-35	96.2
WP_000483477.1\|359146_359383_+	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
WP_001662395.1\|359372_359762_+	hypothetical protein	A7TWI1	Staphylococcus_phage	5.2e-64	98.4
WP_000595266.1\|359758_359908_+	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	1.8e-17	98.0
WP_001005262.1\|360066_360717_+	hypothetical protein	D2JLD8	Staphylococcus_phage	8.9e-117	100.0
WP_001794311.1\|360716_360917_+	DUF1514 family protein	D2JLD9	Staphylococcus_phage	1.4e-28	100.0
WP_000282756.1\|360939_361401_+	hypothetical protein	R9QT84	Staphylococcus_phage	2.5e-73	99.3
WP_031766053.1\|361508_361916_+	RinA family phage transcriptional regulator	G4KNP7	Staphylococcus_phage	2.9e-73	97.8
WP_000988330.1\|362147_362447_+	HNH endonuclease	G4KNP8	Staphylococcus_phage	4.6e-52	100.0
WP_000402904.1\|362577_362922_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000625087.1\|362918_364580_+\|terminase	terminase large subunit	Q8LTH3	Staphylococcus_phage	0.0e+00	100.0
WP_000025276.1\|364595_365768_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.3e-214	98.5
WP_000642730.1\|365751_366489_+\|protease	Clp protease ClpP	Q6R878	Staphylococcus_virus	1.0e-129	100.0
WP_000154567.1\|366511_367657_+\|capsid	phage major capsid protein	A0A1W6JPL4	Staphylococcus_phage	1.9e-215	100.0
WP_000238239.1\|367676_367961_+	hypothetical protein	A0A1W6JPL8	Staphylococcus_phage	3.0e-45	98.9
WP_000150936.1\|367950_368235_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000755150.1\|368218_368581_+\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
WP_000114341.1\|368577_368982_+	HK97 gp10 family phage protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
WP_000565498.1\|368978_369386_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000268736.1\|369386_370031_+\|tail	phage tail protein	Q6R871	Staphylococcus_virus	6.5e-120	100.0
WP_071621395.1\|370072_370297_+	Ig-like domain-containing protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
WP_001096355.1\|370346_370697_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_001789580.1\|370723_370885_+	hypothetical protein	A0A0H3U330	Staphylococcus_phage	1.6e-22	100.0
WP_115287576.1\|370941_375471_+\|tail	phage tail tape measure protein	A0A1W6JPL0	Staphylococcus_phage	0.0e+00	91.0
WP_000567408.1\|375467_376952_+\|tail	phage tail family protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
WP_000582186.1\|376967_380753_+	hypothetical protein	C8CH32	Staphylococcus_phage	0.0e+00	99.7
WP_001153681.1\|380742_380895_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_001040254.1\|380941_381229_+	hypothetical protein	D2JLG1	Staphylococcus_phage	4.9e-43	98.9
WP_000539688.1\|381286_381583_+	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
WP_011447039.1\|381732_381909_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_001791821.1\|381961_382069_-	hypothetical protein	NA	NA	NA	NA
WP_000611512.1\|382120_382375_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_000861038.1\|382386_383142_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
383640:383657	attR	NA	NA	NA	NA

DBSCAN-SWA_2

776820 : 784638

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244415.1\|776820_777876_-	two-component system sensor histidine kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
WP_000149344.1\|777875_778562_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|778536_779010_-	DoxX family protein	NA	NA	NA	NA
WP_001093553.1\|779349_779790_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000637683.1\|780069_780654_-	hypothetical protein	NA	NA	NA	NA
WP_001062972.1\|780752_781466_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000941336.1\|781469_781889_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_000446724.1\|781890_782559_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000604519.1\|782909_783503_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	5.8e-38	42.9
WP_001217809.1\|783486_784638_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1

DBSCAN-SWA_3

796609 : 811266

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663031.1\|796609_797668_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.3e-21	26.4
WP_000197262.1\|797962_798505_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429016.1\|799170_800088_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.4
WP_000193751.1\|800369_801875_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_000930014.1\|802214_802715_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_001068492.1\|802758_803601_-	DMT family transporter	NA	NA	NA	NA
WP_000692523.1\|804401_804800_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	4.3e-53	72.7
WP_000855505.1\|804762_806868_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000562498.1\|806985_807957_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_014532584.1\|808399_808519_+	hypothetical protein	NA	NA	NA	NA
WP_000876318.1\|808593_809565_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_001245570.1\|809551_810508_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	7.2e-06	60.0
WP_000616872.1\|810504_811266_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	5.0e-18	31.6

DBSCAN-SWA_4

890832 : 909287

Staphylococcus_phage(71.43%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000571213.1\|890832_891858_+	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.4e-28	36.8
WP_000520232.1\|891850_892546_+	ABC transporter permease	NA	NA	NA	NA
WP_000732333.1\|892563_893385_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000733775.1\|894836_895565_-	staphylococcal enterotoxin type K	A0EX09	Staphylococcus_phage	1.9e-22	32.3
WP_001033315.1\|895588_896317_-	staphylococcal enterotoxin type Q	A0EX09	Staphylococcus_phage	3.9e-28	35.4
WP_001228759.1\|896386_896818_-	hypothetical protein	Q4ZCB6	Staphylococcus_virus	5.1e-36	56.0
WP_000281657.1\|896834_897293_-	ImmA/IrrE family metallo-endopeptidase	A0A0H4J322	Staphylococcus_phage	5.1e-66	83.0
WP_001260004.1\|897304_897637_-	helix-turn-helix transcriptional regulator	A0A1J0MFC1	Staphylococcus_phage	1.6e-37	74.5
WP_000243851.1\|897828_898092_+	helix-turn-helix transcriptional regulator	A0A2H4J9X2	uncultured_Caudovirales_phage	3.1e-36	94.8
WP_000091731.1\|898084_898357_+	winged helix-turn-helix domain-containing protein	Q4ZE77	Staphylococcus_phage	9.7e-41	90.0
WP_115287566.1\|898368_898515_+	pathogenicity island protein	NA	NA	NA	NA
WP_001058497.1\|898507_898720_+	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	2.4e-18	72.1
WP_001038252.1\|898721_899081_+	hypothetical protein	NA	NA	NA	NA
WP_001103942.1\|899081_899402_+	DUF1474 family protein	Q4ZE75	Staphylococcus_phage	1.3e-20	51.9
WP_001002731.1\|899465_900335_+	primase C-terminal domain-containing protein	A0A1W6JQL5	Staphylococcus_phage	7.7e-156	92.7
WP_001806477.1\|900422_901820_+	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	1.0e-255	94.7
WP_001039165.1\|902098_902461_+	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	4.6e-62	95.8
WP_001804819.1\|902462_902726_+	hypothetical protein	NA	NA	NA	NA
WP_001019290.1\|902727_903369_+	hypothetical protein	Q4ZE67	Staphylococcus_phage	3.2e-111	93.4
WP_001190615.1\|903818_904160_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	1.4e-57	99.1
WP_000846280.1\|904171_904750_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
WP_000448769.1\|904767_904986_+	hypothetical protein	NA	NA	NA	NA
WP_000771368.1\|905036_905564_+\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	3.5e-87	97.1
WP_000358778.1\|905566_905908_+	hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
WP_000840480.1\|906750_907260_+	DUF4065 domain-containing protein	D7RWK7	Brochothrix_phage	8.5e-22	37.4
WP_115287564.1\|907252_907861_+	hypothetical protein	NA	NA	NA	NA
WP_000812237.1\|908065_908293_+	hypothetical protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.9e-13	47.4
WP_001035611.1\|908735_909287_-	DUF4888 domain-containing protein	A0A0F6N4L1	Staphylococcus_phage	6.5e-60	65.8

DBSCAN-SWA_5

1072737 : 1081210

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861571.1\|1072737_1073220_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.8e-20	43.3
WP_001010395.1\|1073206_1074331_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_115287562.1\|1074334_1075039_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	8.9e-46	40.8
WP_000848350.1\|1075038_1075302_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666796.1\|1075303_1075975_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000032754.1\|1075967_1078157_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-140	39.7
WP_000483713.1\|1078135_1079620_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_000030808.1\|1079612_1080641_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.8e-61	41.4
WP_000238676.1\|1080643_1081210_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-28	40.1

DBSCAN-SWA_6

1613301 : 1621613

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001213904.1\|1613301_1614087_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.8e-18	27.9
WP_000924213.1\|1614212_1615103_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001062185.1\|1615112_1616459_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	3.1e-55	34.0
WP_000683924.1\|1616572_1617673_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	1.0e-08	30.6
WP_000624588.1\|1617675_1618353_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1618483_1619590_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_001217242.1\|1619813_1621613_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-54	36.0

DBSCAN-SWA_7

1691100 : 1700143

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000364543.1\|1691100_1691619_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-28	45.8
WP_000594978.1\|1691640_1693914_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	6.2e-64	29.3
WP_000749796.1\|1694116_1696396_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_001160682.1\|1696670_1696931_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112045.1\|1696949_1698089_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001019178.1\|1698111_1699137_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001005764.1\|1699138_1700143_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

1834820 : 1900067

Staphylococcus_phage(93.02%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000526539.1\|1834820_1835774_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_000764427.1\|1835770_1836334_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	9.2e-102	98.4
WP_000757543.1\|1836453_1836855_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000266091.1\|1837426_1838254_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014937042.1\|1838256_1838376_-	hypothetical protein	NA	NA	NA	NA
WP_001196353.1\|1838487_1839489_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.9e-184	99.4
WP_001008551.1\|1839610_1840075_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001159035.1\|1840087_1841269_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
WP_000493886.1\|1841279_1841912_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.4e-112	99.0
WP_000077341.1\|1841918_1842962_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	9.1e-196	98.8
WP_001261670.1\|1843442_1844945_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_000221182.1\|1845466_1845781_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	3.7e-52	96.2
WP_000989112.1\|1845780_1847073_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	8.8e-225	97.7
WP_000163237.1\|1847090_1847486_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	7.7e-71	97.7
WP_001032833.1\|1847891_1848746_-	glucosaminidase domain-containing protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1849021_1849246_-	hypothetical protein	NA	NA	NA	NA
WP_001153737.1\|1850026_1850470_+	competence protein ComK	NA	NA	NA	NA
WP_001030467.1\|1850456_1850900_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
WP_025174708.1\|1851197_1851833_+\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001096498.1\|1852270_1852984_-	transaldolase	M1PR54	Cyanophage	2.7e-18	34.8
WP_000091447.1\|1853241_1853544_+	hypothetical protein	NA	NA	NA	NA
WP_001200551.1\|1853798_1854164_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.0e-57	96.7
WP_000623480.1\|1854160_1854514_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.6e-17	94.0
WP_000453314.1\|1854763_1855597_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.4e-159	100.0
WP_000366164.1\|1855808_1856717_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.7e-137	99.7
WP_000933822.1\|1856841_1858035_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_000109905.1\|1858405_1859998_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
WP_078056470.1\|1860293_1861040_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.6e-141	98.0
WP_000672006.1\|1861044_1861518_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.4e-82	97.5
WP_000718107.1\|1861583_1861841_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000778543.1\|1861837_1862839_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.3e-183	96.7
WP_000348380.1\|1862843_1864322_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.5e-281	97.0
WP_072491906.1\|1864480_1864936_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	7.5e-78	96.6
WP_078064113.1\|1865237_1865888_+	excalibur calcium-binding domain-containing protein	A0A2H4PQM8	Staphylococcus_phage	7.0e-53	89.4
WP_000070665.1\|1865968_1866964_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	6.0e-72	96.0
WP_000669030.1\|1867039_1867666_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	2.4e-74	73.6
WP_000627546.1\|1867706_1868048_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	94.7
WP_000414210.1\|1868148_1868721_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
WP_000809743.1\|1869053_1869239_-	hypothetical protein	NA	NA	NA	NA
WP_000375476.1\|1869240_1869417_-	hypothetical protein	NA	NA	NA	NA
WP_000240176.1\|1870127_1870364_-\|transposase	IS3 family transposase	A0A0C5AJ30	Paenibacillus_phage	1.4e-16	62.8
WP_154289786.1\|1870821_1870977_+	hypothetical protein	NA	NA	NA	NA
WP_001037040.1\|1871532_1871976_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_115287556.1\|1871975_1872419_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_103204918.1\|1872738_1873188_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_115287555.1\|1873824_1875045_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	9.7e-48	36.9
WP_115287554.1\|1875037_1876594_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.0e-283	98.3
WP_001038861.1\|1877801_1878521_-\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	3.3e-120	91.2
WP_001039440.1\|1878578_1879301_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	5.6e-128	96.7
WP_001039318.1\|1879425_1880133_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	4.8e-124	95.7
WP_001092771.1\|1881097_1881661_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	2.1e-45	57.7
WP_000550246.1\|1882451_1882925_+	hypothetical protein	NA	NA	NA	NA
WP_000543850.1\|1882929_1883721_+	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_000782470.1\|1884089_1885073_-	leukocidin/hemolysin toxin family protein	A0A2H4PQH7	Staphylococcus_phage	5.8e-184	98.5
WP_000878798.1\|1885074_1885995_-	bi-component leukocidin LukED subunit E	A0A2H4PQI5	Staphylococcus_phage	4.0e-171	98.4
WP_000206351.1\|1887382_1888171_+	DUF1828 domain-containing protein	A0A2H4PQI0	Staphylococcus_phage	2.4e-140	95.4
WP_000132893.1\|1890631_1891186_-	serine hydrolase family protein	NA	NA	NA	NA
WP_000167552.1\|1891505_1892906_-	protoporphyrinogen oxidase	NA	NA	NA	NA
WP_000162881.1\|1892929_1893853_-	ferrochelatase	NA	NA	NA	NA
WP_000233540.1\|1893910_1894948_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_000737980.1\|1895209_1895713_+	signal transduction protein TRAP	NA	NA	NA	NA
WP_001245760.1\|1895836_1897060_-	ABC transporter permease	NA	NA	NA	NA
WP_000216881.1\|1897052_1897793_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.1e-25	29.8
WP_000004981.1\|1897926_1898349_+	HIT family protein	NA	NA	NA	NA
WP_000648116.1\|1898489_1898855_+	YtxH domain-containing protein	NA	NA	NA	NA
WP_001667277.1\|1899575_1900067_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.3e-31	45.9

DBSCAN-SWA_9

1915323 : 1957786

Staphylococcus_phage(85.51%)

plate,capsid,holin,terminase,integrase,portal,tail,head

attL 1946261:1946276|attR 1965714:1965729

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000141153.1\|1915323_1915920_-	ImmA/IrrE family metallo-endopeptidase	Q854W5	Mycobacterium_virus	1.0e-05	30.6
WP_001286805.1\|1916589_1916775_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
WP_000139423.1\|1916776_1916887_-	hypothetical protein	W5R8J7	Staphylococcus_phage	1.7e-12	100.0
WP_001788502.1\|1916957_1917110_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	3.1e-20	100.0
WP_031864827.1\|1917351_1918797_-	SH3 domain-containing protein	A0EWV1	Staphylococcus_virus	2.4e-295	99.8
WP_000354121.1\|1918777_1919215_-\|holin	phage holin	B2ZZ05	Staphylococcus_phage	2.0e-72	98.6
WP_000389017.1\|1919270_1919666_-	hypothetical protein	Q4ZBP5	Staphylococcus_phage	2.3e-67	99.2
WP_000276667.1\|1919670_1920909_-\|plate	BppU family phage baseplate upper protein	E0Y3M8	Staphylococcus_virus	5.9e-210	99.5
WP_000524052.1\|1920921_1922796_-	glucosaminidase domain-containing protein	Q4ZBX1	Staphylococcus_virus	0.0e+00	98.1
WP_000466784.1\|1922932_1923232_-	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
WP_015990323.1\|1923272_1923446_-	XkdX family protein	B2ZZ00	Staphylococcus_phage	1.0e-27	100.0
WP_000705916.1\|1923455_1923833_-	DUF2977 domain-containing protein	A0A2H4PQW4	Staphylococcus_phage	2.0e-60	99.2
WP_000259609.1\|1923832_1925656_-\|plate	BppU family phage baseplate upper protein	Q4ZDD5	Staphylococcus_virus	5.9e-291	97.4
WP_001122001.1\|1927566_1929453_-\|tail	phage tail protein	Q4ZBQ3	Staphylococcus_phage	0.0e+00	100.0
WP_000560183.1\|1929463_1930405_-\|tail	phage tail family protein	Q4ZBQ4	Staphylococcus_phage	1.1e-179	99.0
WP_000379452.1\|1930419_1933305_-	hypothetical protein	A0A0E3T8J3	Staphylococcus_phage	0.0e+00	99.6
WP_000880588.1\|1933308_1933593_-	hypothetical protein	A0A0E3TAI0	Staphylococcus_phage	1.5e-44	98.9
WP_000134337.1\|1933637_1934144_-	hypothetical protein	Q4ZBQ7	Staphylococcus_phage	2.7e-92	100.0
WP_000057582.1\|1934210_1934768_-\|tail	tail protein	Q4ZBQ8	Staphylococcus_phage	8.2e-103	100.0
WP_000270191.1\|1934768_1935194_-	DUF3168 domain-containing protein	A0A0E3XBP2	Staphylococcus_phage	6.7e-73	98.6
WP_001151325.1\|1935206_1935614_-	HK97 gp10 family phage protein	A0A0E3T8J0	Staphylococcus_phage	7.6e-74	99.3
WP_000483041.1\|1935600_1935936_-\|head	phage head closure protein	A0A0E3TAH8	Staphylococcus_phage	8.8e-60	100.0
WP_000177351.1\|1935947_1936298_-\|head,tail	phage head-tail adapter protein	A0A0H3U2R5	Staphylococcus_phage	1.9e-60	100.0
WP_000002931.1\|1936303_1936447_-	hypothetical protein	A0A0E3XC49	Staphylococcus_phage	4.6e-18	100.0
WP_000235168.1\|1936458_1937373_-\|capsid	phage major capsid protein	A0A0H3U2U7	Staphylococcus_phage	1.2e-170	100.0
WP_001019220.1\|1937389_1937974_-	DUF4355 domain-containing protein	A0A2H4JDY6	uncultured_Caudovirales_phage	2.8e-77	99.5
WP_000346033.1\|1938076_1938283_-	hypothetical protein	A0A0N9BB04	Staphylococcus_phage	3.2e-28	100.0
WP_000184131.1\|1938284_1939238_-\|head	phage head morphogenesis protein	A0A0N7E0U6	Staphylococcus_phage	6.6e-177	99.4
WP_000177421.1\|1939206_1940631_-\|portal	phage portal protein	A0A0E3T9I6	Staphylococcus_phage	1.4e-271	99.8
WP_001037577.1\|1940627_1941851_-\|terminase	PBSX family phage terminase large subunit	A0A0N9BAX9	Staphylococcus_phage	6.4e-241	99.5
WP_000594088.1\|1941843_1942338_-\|terminase	terminase small subunit	A0A0N9BAX3	Staphylococcus_phage	3.4e-84	100.0
WP_000286968.1\|1942690_1943092_-	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
WP_001652281.1\|1943092_1943266_-	transcriptional activator RinB	A0A0H4ISR0	Staphylococcus_phage	8.3e-22	98.2
WP_001072793.1\|1943258_1943462_-	hypothetical protein	B2ZYX5	Staphylococcus_phage	2.0e-30	97.0
WP_000141186.1\|1943458_1943653_-	hypothetical protein	S4SX95	Staphylococcus_phage	7.4e-27	93.8
WP_000195803.1\|1943649_1943856_-	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
WP_000120376.1\|1943852_1944098_-	hypothetical protein	Q9B0F1	Staphylococcus_virus	3.6e-26	85.2
WP_000185637.1\|1944134_1944644_-	dUTP pyrophosphatase	Q8SDV3	Staphylococcus_phage	7.3e-90	99.4
WP_001065085.1\|1944636_1944885_-	DUF1024 family protein	A0A0E3XC66	Staphylococcus_phage	1.2e-37	98.8
WP_000132206.1\|1944898_1945141_-	hypothetical protein	M1T302	Staphylococcus_phage	3.0e-41	100.0
WP_000029388.1\|1945144_1945501_-	hypothetical protein	M1RZB8	Staphylococcus_phage	1.4e-60	100.0
WP_001187233.1\|1945501_1945687_-	DUF3113 family protein	M1SNY0	Staphylococcus_phage	1.4e-27	100.0
WP_000049796.1\|1945691_1946096_-	DUF1064 domain-containing protein	C5I647	Staphylococcus_phage	4.8e-68	99.3
WP_001123676.1\|1946106_1946328_-	DUF3269 family protein	A0A1W6JQ35	Staphylococcus_phage	1.1e-34	98.6
1946261:1946276	attL	NA	NA	NA	NA
WP_000256596.1\|1946340_1946499_-	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	5.8e-22	96.2
WP_000803046.1\|1946492_1947266_-	ATP-binding protein	A0A2H4PQI3	Staphylococcus_phage	5.1e-143	99.2
WP_000190253.1\|1947275_1948046_-	conserved phage C-terminal domain-containing protein	A0A1W6JQ00	Staphylococcus_phage	6.4e-122	100.0
WP_000414755.1\|1948111_1948393_+	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
WP_001081076.1\|1948385_1948535_-	hypothetical protein	A7TWN0	Staphylococcus_phage	2.4e-17	100.0
WP_001124447.1\|1948531_1949206_-	hypothetical protein	Q4ZD97	Staphylococcus_virus	9.9e-127	97.8
WP_000934782.1\|1949219_1949648_-	single-stranded DNA-binding protein	A0A0E3XC62	Staphylococcus_phage	1.7e-63	90.8
WP_000139720.1\|1949647_1950271_-	DUF1071 domain-containing protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
WP_000815401.1\|1950263_1950485_-	DUF2483 family protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
WP_000291090.1\|1950494_1950755_-	DUF1108 family protein	Q4ZDA1	Staphylococcus_virus	1.2e-43	100.0
WP_000048126.1\|1950846_1951008_-	DUF1270 family protein	A0A2H4PQQ1	Staphylococcus_phage	3.3e-20	100.0
WP_000977381.1\|1951000_1951222_-	hypothetical protein	A0A0F6N3I2	Staphylococcus_phage	1.5e-31	100.0
WP_000122246.1\|1951292_1951538_+	hypothetical protein	E9LT77	Staphylococcus_phage	6.9e-38	100.0
WP_001094942.1\|1951493_1951709_-	hypothetical protein	E9LT76	Staphylococcus_phage	2.2e-32	100.0
WP_115287553.1\|1951724_1952477_-	phage antirepressor KilAC domain-containing protein	A0A1X9H0A0	Staphylococcus_phage	5.6e-139	98.8
WP_000933364.1\|1952478_1952664_-	helix-turn-helix transcriptional regulator	A0A0H4IP57	Staphylococcus_phage	1.7e-25	98.4
WP_000394412.1\|1953108_1953591_+	hypothetical protein	A0A0N9BAX2	Staphylococcus_phage	1.2e-81	98.8
WP_000438350.1\|1953691_1953871_-	hypothetical protein	A0A0H3U490	Staphylococcus_phage	4.9e-25	96.6
WP_001106623.1\|1953886_1954141_-	helix-turn-helix transcriptional regulator	B7T095	Staphylococcus_virus	3.1e-41	98.8
WP_000874710.1\|1954330_1954969_+	LexA family transcriptional regulator	A0A0E3TAG1	Staphylococcus_phage	8.8e-117	100.0
WP_000705241.1\|1955034_1955202_+	hypothetical protein	U5U774	Staphylococcus_phage	1.7e-24	100.0
WP_000446801.1\|1955361_1955547_+	hypothetical protein	Q8SDX3	Staphylococcus_phage	6.6e-25	100.0
WP_000391592.1\|1955582_1956488_+	hypothetical protein	A0A0F6N3N6	Staphylococcus_phage	1.4e-168	100.0
WP_000143212.1\|1956424_1956625_-	excisionase	Q38044	Staphylococcus_phage	5.6e-30	100.0
WP_001145725.1\|1956736_1957786_+\|integrase	site-specific integrase	A0A0F6N3M4	Staphylococcus_phage	9.1e-204	100.0
1965714:1965729	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2042450 : 2142438

128

Staphylococcus_phage(85.56%)

capsid,holin,integrase,coat,portal,tail,head,protease

attL 2121822:2121845|attR 2145553:2145576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000827734.1\|2042450_2043617_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
WP_000434532.1\|2043647_2043971_+	staphostatin A	NA	NA	NA	NA
WP_000669861.1\|2044263_2044437_-	NETI motif-containing protein	NA	NA	NA	NA
WP_000011542.1\|2044417_2045020_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000040873.1\|2045289_2046111_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.8e-69	52.7
WP_000284422.1\|2046103_2047573_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
WP_000897639.1\|2047756_2048833_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_001177828.1\|2048852_2049647_+	prephenate dehydratase	NA	NA	NA	NA
WP_042906432.1\|2049718_2049826_+	hypothetical protein	NA	NA	NA	NA
WP_000323165.1\|2049836_2051399_-	SLC13 family permease	NA	NA	NA	NA
WP_000275712.1\|2051604_2052702_-	pectate lyase	U5PWM6	Bacillus_phage	1.5e-47	34.6
WP_000149686.1\|2053074_2053635_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_001140871.1\|2053687_2054617_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_001806619.1\|2054719_2054938_-	hypothetical protein	NA	NA	NA	NA
WP_001021226.1\|2055034_2056414_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000181322.1\|2056533_2057562_-	lactonase family protein	NA	NA	NA	NA
WP_000205106.1\|2057832_2058234_+	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
WP_000267034.1\|2058290_2058464_-	hypothetical protein	NA	NA	NA	NA
WP_001188076.1\|2058914_2059955_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000713073.1\|2060011_2060854_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001033967.1\|2060850_2061408_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000966288.1\|2061467_2061992_-	membrane protein	NA	NA	NA	NA
WP_000182842.1\|2062112_2062676_+	thioredoxin family protein	NA	NA	NA	NA
WP_001221656.1\|2062741_2063482_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000763049.1\|2063481_2064354_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	1.4e-27	36.0
WP_000645734.1\|2064350_2065031_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000991298.1\|2065031_2065928_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000691584.1\|2065924_2066305_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000681966.1\|2066562_2066739_-	hypothetical protein	NA	NA	NA	NA
WP_000990056.1\|2066980_2067079_-	hypothetical protein	NA	NA	NA	NA
WP_001068532.1\|2067278_2068565_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000669713.1\|2068834_2070244_-	MAP domain-containing protein	NA	NA	NA	NA
WP_000669789.1\|2071201_2071381_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
WP_001791826.1\|2071691_2071952_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000702263.1\|2072004_2072355_-	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
WP_000727645.1\|2073037_2073487_+	chemotaxis-inhibiting protein CHIPS	A0A075LZI2	Staphylococcus_phage	8.7e-79	100.0
WP_000920038.1\|2074516_2075008_-	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
WP_000861038.1\|2075198_2075954_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000611512.1\|2075965_2076220_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_031762631.1\|2076271_2076379_+	hypothetical protein	NA	NA	NA	NA
WP_072357969.1\|2076431_2076608_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	6.5e-22	96.6
WP_000340977.1\|2076750_2077125_-	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
WP_115287551.1\|2077180_2077468_-	hypothetical protein	A0A075LZJ6	Staphylococcus_phage	3.2e-42	95.8
WP_001153681.1\|2077514_2077667_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_000582186.1\|2077656_2081442_-	hypothetical protein	C8CH32	Staphylococcus_phage	0.0e+00	99.7
WP_000567390.1\|2081457_2082942_-\|tail	phage tail family protein	A0A068A242	Staphylococcus_phage	1.5e-297	100.0
WP_115287550.1\|2082938_2087483_-\|tail	phage tail tape measure protein	A0A075M036	Staphylococcus_phage	0.0e+00	88.5
WP_001789580.1\|2087539_2087701_-	hypothetical protein	A0A0H3U330	Staphylococcus_phage	1.6e-22	100.0
WP_001096355.1\|2087727_2088078_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_071621395.1\|2088127_2088352_-	Ig-like domain-containing protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
WP_000268736.1\|2088393_2089038_-\|tail	phage tail protein	Q6R871	Staphylococcus_virus	6.5e-120	100.0
WP_000565498.1\|2089038_2089446_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000114341.1\|2089442_2089847_-	HK97 gp10 family phage protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
WP_000755150.1\|2089843_2090206_-\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
WP_000150936.1\|2090189_2090474_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000238239.1\|2090463_2090748_-	hypothetical protein	A0A1W6JPL8	Staphylococcus_phage	3.0e-45	98.9
WP_000154567.1\|2090767_2091913_-\|capsid	phage major capsid protein	A0A1W6JPL4	Staphylococcus_phage	1.9e-215	100.0
WP_000642730.1\|2091935_2092673_-\|protease	Clp protease ClpP	Q6R878	Staphylococcus_virus	1.0e-129	100.0
WP_000025276.1\|2092656_2093829_-\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.3e-214	98.5
WP_000402904.1\|2095501_2095846_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000988332.1\|2095976_2096276_-	HNH endonuclease	A0A2I6PDH9	Staphylococcus_phage	3.5e-52	100.0
WP_000590122.1\|2096507_2096924_-	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
WP_000265041.1\|2096951_2097152_-	DUF1514 family protein	R9QT57	Staphylococcus_phage	1.1e-28	100.0
WP_001806376.1\|2097151_2097301_-	transcriptional activator RinB	A0A2I6PDY4	Staphylococcus_phage	2.4e-17	93.9
WP_001125015.1\|2097303_2097504_-	hypothetical protein	A0A2I6PF22	Staphylococcus_phage	1.8e-28	100.0
WP_000195766.1\|2097478_2097664_-	DUF1381 domain-containing protein	A0A2I6PDV0	Staphylococcus_phage	1.9e-24	96.8
WP_000185675.1\|2097700_2098237_-	dUTP diphosphatase	M1SNY5	Staphylococcus_phage	7.9e-95	98.3
WP_001152004.1\|2098229_2098445_-	hypothetical protein	NA	NA	NA	NA
WP_001065114.1\|2098444_2098687_-	DUF1024 family protein	A0A2I6PDB2	Staphylococcus_phage	5.4e-35	97.5
WP_001126842.1\|2098700_2098949_-	hypothetical protein	S4V683	Staphylococcus_phage	4.0e-41	95.1
WP_000101278.1\|2098949_2099321_-	hypothetical protein	A7TWA7	Staphylococcus_phage	3.7e-51	91.9
WP_000401971.1\|2099333_2099738_-	RusA family crossover junction endodeoxyribonuclease	O80087	Staphylococcus_phage	1.4e-72	99.3
WP_000338528.1\|2099746_2099965_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
WP_047214707.1\|2100863_2101334_-	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	8.0e-83	100.0
WP_072528355.1\|2101334_2101952_-	MBL fold metallo-hydrolase	A0A2I6PDI9	Staphylococcus_phage	2.7e-86	99.4
WP_000138475.1\|2102032_2102953_-	recombinase RecT	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
WP_001806401.1\|2102954_2104910_-	AAA family ATPase	I1W619	Staphylococcus_phage	0.0e+00	97.8
WP_001205732.1\|2104906_2105170_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000291506.1\|2105178_2105439_-	DUF1108 family protein	A0EWW8	Staphylococcus_phage	1.9e-41	96.5
WP_000165371.1\|2105443_2105746_-	DUF2482 family protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
WP_000048131.1\|2105840_2106002_-	DUF1270 family protein	A0A1P8L6G0	Staphylococcus_phage	5.6e-20	98.1
WP_001806402.1\|2105998_2106322_-	DUF771 domain-containing protein	A0A1P8L6F3	Staphylococcus_phage	1.8e-57	99.1
WP_000801108.1\|2106380_2106608_+	hypothetical protein	A7TWL9	Staphylococcus_phage	1.7e-38	100.0
WP_000389906.1\|2106609_2106801_-	hypothetical protein	A7TWL8	Staphylococcus_phage	2.8e-26	100.0
WP_000768245.1\|2106850_2107207_+	DUF2513 domain-containing protein	A0A1P8L6H1	Staphylococcus_phage	6.1e-59	100.0
WP_001148859.1\|2107201_2107396_-	hypothetical protein	A0A1P8L6G6	Staphylococcus_phage	4.3e-19	100.0
WP_001148605.1\|2107411_2108164_-	phage antirepressor KilAC domain-containing protein	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
WP_000128907.1\|2108214_2108544_+	hypothetical protein	M9NS98	Staphylococcus_phage	2.7e-53	100.0
WP_001025404.1\|2108532_2108748_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
WP_000854072.1\|2108763_2109027_-	helix-turn-helix transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
WP_001031454.1\|2109158_2109872_+	helix-turn-helix transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
WP_000759683.1\|2109887_2110820_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	2.2e-172	99.7
WP_000591749.1\|2110825_2111167_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
WP_000705240.1\|2111370_2111553_+	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
WP_001549185.1\|2111630_2112344_+	type II toxin-antitoxin system PemK/MazF family toxin	A0A1X9H026	Staphylococcus_phage	5.0e-129	100.0
WP_000857173.1\|2112534_2113572_+\|integrase	site-specific integrase	A7TWL3	Staphylococcus_phage	1.9e-177	99.4
WP_000595393.1\|2115024_2116041_-	bi-component leukocidin LukGH subunit G	A0A1X9IGW5	Staphylococcus_phage	3.0e-26	30.6
WP_115287578.1\|2116062_2117118_-	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	1.9e-36	34.6
WP_000206649.1\|2117553_2118777_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_001108473.1\|2119274_2120144_-	DMT family transporter	NA	NA	NA	NA
WP_000278573.1\|2120146_2121349_-	5-aminolevulinate synthase	D2TEZ5	Emiliania_huxleyi_virus	4.9e-36	27.9
2121822:2121845	attL	NA	NA	NA	NA
WP_001045081.1\|2121981_2123289_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000216892.1\|2123860_2124487_-	hypothetical protein	C8CH40	Staphylococcus_phage	4.8e-43	45.0
WP_000201395.1\|2124483_2124663_-	hypothetical protein	NA	NA	NA	NA
WP_001239268.1\|2125796_2126732_+	TDT family transporter	NA	NA	NA	NA
WP_171994849.1\|2127595_2127781_-	DUF3102 domain-containing protein	A0A2H4JAH5	uncultured_Caudovirales_phage	4.3e-08	46.8
WP_001035598.1\|2128243_2128948_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA
WP_000358778.1\|2129667_2130009_-	hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
WP_000771368.1\|2130011_2130539_-\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	3.5e-87	97.1
WP_000448769.1\|2130589_2130808_-	hypothetical protein	NA	NA	NA	NA
WP_000846280.1\|2130825_2131404_-	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
WP_001190615.1\|2131415_2131757_-	hypothetical protein	Q4ZE66	Staphylococcus_phage	1.4e-57	99.1
WP_001019290.1\|2132206_2132848_-	hypothetical protein	Q4ZE67	Staphylococcus_phage	3.2e-111	93.4
WP_001804819.1\|2132849_2133113_-	hypothetical protein	NA	NA	NA	NA
WP_001039165.1\|2133114_2133477_-	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	4.6e-62	95.8
WP_001806477.1\|2133755_2135153_-	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	1.0e-255	94.7
WP_001002731.1\|2135240_2136110_-	primase C-terminal domain-containing protein	A0A1W6JQL5	Staphylococcus_phage	7.7e-156	92.7
WP_001103942.1\|2136173_2136494_-	DUF1474 family protein	Q4ZE75	Staphylococcus_phage	1.3e-20	51.9
WP_001038252.1\|2136494_2136854_-	hypothetical protein	NA	NA	NA	NA
WP_001058497.1\|2136855_2137068_-	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	2.4e-18	72.1
WP_000784875.1\|2137060_2137207_-	hypothetical protein	NA	NA	NA	NA
WP_000481973.1\|2137203_2137521_-	helix-turn-helix domain-containing protein	A0A1W6JQE0	Staphylococcus_phage	1.3e-49	96.2
WP_000595328.1\|2137534_2138176_-	phage repressor protein	A0A2H4JB17	uncultured_Caudovirales_phage	1.0e-96	84.0
WP_000448765.1\|2138179_2138392_-	helix-turn-helix transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	3.0e-05	44.4
WP_001070980.1\|2138545_2139208_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000024833.1\|2139220_2140393_+\|integrase	tyrosine-type recombinase/integrase	A0A1W6JQD3	Staphylococcus_phage	2.3e-219	97.9
WP_000240657.1\|2140461_2142078_-	chaperonin GroEL	A0A240F779	uncultured_virus	1.3e-156	54.5
WP_000917289.1\|2142153_2142438_-	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
2145553:2145576	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP029751.1|WP_000681966.1|2066562_2066739_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP029751.1|WP_000990056.1|2066980_2067079_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP029751.1|WP_000681966.1|2066562_2066739_-|hypothetical-protein

2066562_2066739_-

58 aa aa

WHTH_GntR

Identity	Hit_domain_coverage
0.48484848484848486	1.0

2042450-2142438

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP029751_4	Orphan	4.1\|2121785\|34\|NZ_CP029751\|CRISPRCasFinder	2121785-2121818	34	2114627-2114594	2

1. spacer 4.1|2121785|34|NZ_CP029751|CRISPRCasFinder matches to NZ_CP029751 position: 2114627-2114594, mismatch: 2

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttttcgaatttcttttcgaaattctctgtgttgg	Protospacer
** * *****************************

NZ_CP029751.1|WP_000990056.1|2066980_2067079_-|hypothetical-protein

2066980_2067079_-

32 aa aa

WHTH_GntR

Identity	Hit_domain_coverage
0.48484848484848486	1.0

2042450-2142438

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP029751_4	Orphan	4.1\|2121785\|34\|NZ_CP029751\|CRISPRCasFinder	2121785-2121818	34	2114627-2114594	2

1. spacer 4.1|2121785|34|NZ_CP029751|CRISPRCasFinder matches to NZ_CP029751 position: 2114627-2114594, mismatch: 2

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttttcgaatttcttttcgaaattctctgtgttgg	Protospacer
** * *****************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029750

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP029751

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information