CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP033334	Mesorhizobium loti strain NZP2042 chromosome, complete genome	4 crisprs	csa3,DEDDh,WYL,PD-DExK,cas3	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP033334_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033334_1

382019-382110

Orphan

Consensus_repeat	Method
CGCCAGACCTGTCGCAACCGCCGAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033334_1

>merge|NZ_CP033334|1|382019-382110|CRISPRCasFinder
CGCCAGACCTGTCGCAACCGCCGAGCTTCGGCGATGCGCCGCCGGCCAAGCCGGCGACACCGGCGCCAGACCTCTCGCAACCGCCGAGCTTC

>NZ_CP033334|1|1|382019-382110|CRISPRCasFinder
CGCCAGACCTGTCGCAACCGCCGAGCTTC	GGCGATGCGCCGCCGGCCAAGCCGGCGACACCGG
CGCCAGACCTCTCGCAACCGCCGAGCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033334.1\|WP_056569195.1\|390441_391359_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367029
NZ_CP033334.1\|WP_056570335.1\|388944_389829_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP033334.1\|WP_056570339.1\|384795_385569_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982
NZ_CP033334.1\|WP_056569202.1\|386863_387847_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240633
NZ_CP033334.1\|WP_056569216.1\|379744_380329_+\|TRAP-transporter-small-permease-subunit	unknown	unknown	gnl\|CDD\|227011
NZ_CP033334.1\|WP_056570337.1\|386393_386780_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_056569228.1\|371244_373560_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227334
NZ_CP033334.1\|WP_056569219.1\|378631_379537_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223633
NZ_CP033334.1\|WP_056570333.1\|390027_390435_-\|DUF2000-family-protein	unknown	unknown	gnl\|CDD\|227290
NZ_CP033334.1\|WP_019862764.1\|370015_370165_-\|DUF3096-domain-containing-protein	unknown	unknown	gnl\|CDD\|371454
NZ_CP033334.1\|WP_081294945.1\|387843_388866_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP033334.1\|WP_056569207.1\|383424_384531_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|227009
NZ_CP033334.1\|WP_056570341.1\|373651_377131_-\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|236404
NZ_CP033334.1\|WP_056569210.1\|382129_383158_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176196
NZ_CP033334.1\|WP_056569234.1\|369610_369835_-\|aa3-type-cytochrome-c-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|369548
NZ_CP033334.1\|WP_081294943.1\|377345_377879_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_056569204.1\|385605_386277_-\|porin-family-protein	unknown	unknown	gnl\|CDD\|226163
NZ_CP033334.1\|WP_056569231.1\|370327_371098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_056569222.1\|377871_378483_-\|CGNR-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|227803
NZ_CP033334.1\|WP_056569237.1\|368242_369523_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|240629

Protein	Function_ID	Function_description	E-value
NZ_CP033334.1\|WP_056569195.1\|390441_391359_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|367029	pfam02311, AraC_binding, AraC-like ligand binding domain. This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.	8.68534e-26
NZ_CP033334.1\|WP_056569202.1\|386863_387847_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240633	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase. Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	6.52713e-144
NZ_CP033334.1\|WP_056569216.1\|379744_380329_+\|TRAP-transporter-small-permease-subunit	gnl\|CDD\|227011	COG4665, FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism].	5.85267e-94
NZ_CP033334.1\|WP_056570335.1\|388944_389829_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	4.03393e-16
NZ_CP033334.1\|WP_056569228.1\|371244_373560_-\|EAL-domain-containing-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	4.21965e-117
NZ_CP033334.1\|WP_056569219.1\|378631_379537_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	8.09445e-60
NZ_CP033334.1\|WP_056570333.1\|390027_390435_-\|DUF2000-family-protein	gnl\|CDD\|227290	COG4954, COG4954, Uncharacterized protein conserved in bacteria [Function unknown].	3.5198e-87
NZ_CP033334.1\|WP_019862764.1\|370015_370165_-\|DUF3096-domain-containing-protein	gnl\|CDD\|371454	pfam11295, DUF3096, Protein of unknown function (DUF3096). This family of proteins with unknown function appears to be restricted to Proteobacteria.	0.00134847
NZ_CP033334.1\|WP_081294945.1\|387843_388866_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.26592e-113
NZ_CP033334.1\|WP_056569207.1\|383424_384531_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|227009	COG4663, FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP033334.1\|WP_056570341.1\|373651_377131_-\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	gnl\|CDD\|236404	PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase; Validated.	0
NZ_CP033334.1\|WP_056569234.1\|369610_369835_-\|aa3-type-cytochrome-c-oxidase-subunit-IV	gnl\|CDD\|369548	pfam07835, COX4_pro_2, Bacterial aa3 type cytochrome c oxidase subunit IV. Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown.	4.79308e-08
NZ_CP033334.1\|WP_056569210.1\|382129_383158_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176196	cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.	3.67817e-165
NZ_CP033334.1\|WP_056569204.1\|385605_386277_-\|porin-family-protein	gnl\|CDD\|226163	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane].	2.85305e-38
NZ_CP033334.1\|WP_056570339.1\|384795_385569_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	1.95118e-114
NZ_CP033334.1\|WP_056569222.1\|377871_378483_-\|CGNR-zinc-finger-domain-containing-protein	gnl\|CDD\|227803	COG5516, COG5516, Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only].	1.50245e-78
NZ_CP033334.1\|WP_056569237.1\|368242_369523_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0

>NZ_CP033334.1|WP_056569216.1|379744_380329_+|TRAP-transporter-small-permease-subunit
MEGPLALSRGIDRLNEFIGKSVSWLILLAILVSAANAVIRKMFDTSSNAWLELQWYLFGAAFMLAAAYTLKQNEHIRIDIVYGLFSRRVQHWIDLLGHILFLMPFVTLMVVYFVPYVSLSFHSGEMSTNAGGLIVWPAKAILLVGFFLLALQGISEIIKKIAIMRGVMDDPNPFISVHEQAELEAKALADEVRS
>NZ_CP033334.1|WP_056569219.1|378631_379537_+|branched-chain-amino-acid-ABC-transporter-permease
MLYFFQQVLNGLHSGALYALLAFGYVLTNGILHRTNLAYGALFAFCGQAMILSVAFGYQVLWLTLLASVLFGVVAAFLYAALISHVLSRSIFEPLADRSPNAIVVTTLGILLVLSEASRIAADTHDLWLPPMLAQPIVFAETSGFKATLTLIQVLDCAVVLAAVALATSAFAHSNFGRCWRAVSDDPRAAALCGVDVRGVFRRAVLLGGFCAALAGVMASLYYGNVSFGSGLVYGLKILFVTAVGGYLSPPRAAVGAAAFGMAESLWAGYFPVEWRDAWMYLFLVAMLILIGAGRDTGKVV
>NZ_CP033334.1|WP_056569222.1|377871_378483_-|CGNR-zinc-finger-domain-containing-protein
MTVAWTPHRFTGGLLALDTANTVVLRGDPQRTFDRFDDQVEIARFADAASGFRAAELGDRRLAVSSPAAIAPVVLSIREATDRLFRGAVSKGALATADLPDFLRACAEGLAGSRTEIGVPGKPFGNPSTPIAFEAALAVSALSLLRDDTIARLRICPNCTWLFVDRSRNSSRLWCDMSVCGNRQKASRHYRRRRLAAHEVKDA
>NZ_CP033334.1|WP_081294943.1|377345_377879_-|hypothetical-protein
MPRGFSRALVAGAILIAAAALGGCRDTGGEGKLFEVSGKIFVFNYRLARATYVVTLRPLQPMGEGQVAVASFQNPAGGAPLVVEQKVWPKLDKVSLESPALACIVKNKPYAIAISIKGADGTVLQTIDTTLMSTEDQSILPDRPLVIDQLYTANPDLAGHPDGKLPGEPKPDCSKAG
>NZ_CP033334.1|WP_056570341.1|373651_377131_-|indolepyruvate-ferredoxin-oxidoreductase-family-protein
MTLHDVALDDKFDLGKERIFLSGAQAVIRMLLMQRERDRRAGLNTAGFVSGYRGSPLGGLDMQLWKAKKQLAGADIVFQPGLNEELAATACWGSQQTELLGEGTHDGVFSVWYGKGPGVDRSGDVFRHANLAGSSRHGGVLALMGDDHMAESSTNAHATEFLFVDTMVPILNPAGVQEIIDYGLYGFAMSRFAGTWAAIKCVKDNIESTASVDASLERLNIVLPEFDMPPGGLNIRHEIDMLGQEERLHEYKRAAASAFIHANGLNHIVYSGGRNPKLGIITLGKSYLDVRQALEDIGIDEAAANRIGVRLFKVGCPWPLDLQHIADFARGLDAIVVVEEKRSLIEVQLRENLYGTAIQPVIVGKKDERGDWLFPAKGALDPNEIAIALGERIVKTIGPSEEISARVAKLRQFQAMLADATDIGSRTPFFCSGCPHNSSTKVPDGSIAAAGIGCHFMALWMDRNTLGFTAMGGEGAQWVGQAPFSKRDHIFQNLGDGTYNHSGTLAIRFALSSGANITYKILYNDAVAMTGGQPHEGGLTVDMIARQVRAEGVDRIAIVTDEPDKYAGKAEFPAGATIHHRDDLDLVQRELRDVKGVSILLYDQTCAAEKRRRRKRGTFPDPDKRVFINELVCEGCGDCGVQSNCVSIQPVETEFGRKRKIDQSSCNKDFSCVNGFCPSFVTVHGAKIRKAEGLAGKTDPLDGVPAPAEFPLGAEGWAAIIDGVGGTGVVTVGAVLGMAAHLESKGCGMIDMAGLAQKGGSVFTHVRIARTPDDIHAIRVSAGKADLVLGCDLVVSGAKKVLTAVREGHTIFLANTAEIMPGEFARSADFSLPIERLKKAIRTAAGEDKAHFFDATRTATSLFGNSLGANMFMLGFAFQHGGLPLSAEAVEKAIELNGEAVAMNIAAFRWGRRAAHQPDFVRGLVSQQGKAGQTAPVAQTLDEIIARRVAFLTSYQNAAYGKRYADRLAQLRAAEAKAVPGSTAVTEAAARNLFKLMAIKDEYEVARLYTDGSFAAELGKQFQSYEKLEFHLAPPLMGRRGNDGKPRKSSFGPWMMKGFQLLAALKGLRGTAFDLFGYTAERRAERQLLAQYEGDLQLVAKSLAPDKADAAVALVSVPALIRGYGHVRQATAEKALGERQRLLDRLAKASARPELQAAE
>NZ_CP033334.1|WP_056569228.1|371244_373560_-|EAL-domain-containing-protein
MGKTKTDNIPVDVYIQFVRSLFDNAHMLVIGALCHATISLMVYWRHGQPIFLVLAGALLGIGVWRYFSLRRFHRSGGEIRDAADATKWEREYILKGSLQGLLLGFFCFISIYVYSDSYAEIGALSVTMASLVTVVGRNYGSPRMVMIFAVTFVGPIAAALILRFDLPYVVLGLLIIPFMFIIKGSADHVRNVLFSAVVGHKQARQIAQRFNRALNTMSHGLVMLGPDGKVVVGNAEAARLMSLKSPDQLLGRSIHSLLLRGVAGGMLAPKDCRYIEAQLTRALREGRDRKVLVSFSNGQHFEFSAREGNQELGVITFEDVTARVETEEKIRFMARYDNLTGLPNRAYFHELVGELMASGERDRLCGLAVIDLDDFKSVNDTLGHPVGDGLIYAVAERLSAIAGQGIAVSRFGGDEFMMFFDRIEDESHLASLLDQIFADLQGEVDVAGHGLRIQASAGAVLSKVEGTDVDAMIVKADLALYKAKELGKNGWRLFEAAMDAAFRNRQLMKADLRTAVESKNLRVVYQPIVAMKTMRIASCEALCRWDHPDLGPISPGIFIPLAEEMGIISEISTFVLQAACAECAKWPDQTSVSVNLSARDFRNGDVIQKVRDALASSGLAAGRLEIEVTETALLDDKSQTRQYIEELKRLGVRIALDDFGTGYSSLSYLHKLPLDKIKIDRSFVMDVTQNPRSLELLKGVVDLTRILGLTVTIEGVETFEQLKILLHSVKPDLVQGFLFGAALSASGIETMSNVTWPFAAELQPIAKRAAP
>NZ_CP033334.1|WP_056569231.1|370327_371098_-|hypothetical-protein
MENKLLGTPVAAAAGKGKNSPSVFSDHVMDVLEHVEYRLCDGAEDLEAIYRLRYNSYLHAGMVKPDASRMVKDDFDDLPNSYRFGVFFDGALVSTIRIHYASARYPVSPSTDVFGDVLARRLATGETFVDPSRFAADLEWSSSLRVLPYVTLRLAVVACSHFKPTYCLTAIKEEHSAFYHRIFRSEQAVPPRNYPGLTVPVHLFQSKCSENMQATLDRFPFFNSTAFEQRMLFQRPNRGELAPLTILPTAKYFEAA
>NZ_CP033334.1|WP_019862764.1|370015_370165_-|DUF3096-domain-containing-protein
MHISQLALTPLISLIAGVLILIMPRLLNYIVALYLIVVGLLGLFPHLAG
>NZ_CP033334.1|WP_056569234.1|369610_369835_-|aa3-type-cytochrome-c-oxidase-subunit-IV
MADHSPTGPVELGAKMDYAEHDRTYAGFLALAKYGSLFCGALLLAMAFGFFAGGFFSALILFFLIMAAGAFILR
>NZ_CP033334.1|WP_056569237.1|368242_369523_-|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha
MGQTVFIPRELDANEPRVAASPDTVKRLAGLGFDVVVETGAGTRSRIPDEEFAKAGAAIGKASDVAKADVVLKVRRPTEAELKSYKSGAAVIAIMDPYGNDAAVAALAKAGVTAFSMEFMPRITRAQSMDVLSSQANLAGYQAVIDGASEYDRALPMMMTAAGTVPAAKVFIMGVGVAGLQAIATARRLGAVVTATDVRPAAKEQVASLGAKFLAVEDDEFKAAETAGGYAKEMSKEYQAKQAALTSEHIAKQDIVITTALIPGRPAPKLVSAAMVASMKPGSVLVDLAVERGGNVEGSEPGKVVTTANNVKIVGHLNVPGRVAASASLLYAKNLFAFLETLVDKNTKTLAINRDDDLVKATMLTDGGKVVHPAFAKADQQPRVEPAAIPATTMVADASTPAAPKKAAPRKTAASKSSSPKSKGTA
>NZ_CP033334.1|WP_056569210.1|382129_383158_+|zinc-dependent-alcohol-dehydrogenase-family-protein
MKAVRLEAVGIIALREVVKPVPGPDELLVRIEACGVCGTDRHLFHGEFPCRPPVTPGHEFSGIIEAVGNGVSGFAVGDRVTGDPNIACGRCPHCHAGRVNLCRNLNAIGIHRDGGFAEYVVLPQKQAFILPADLPPTHGAFCEPLGCCLHGIDLAAIKPGSSVIVLGGGVIGLLTVQLARLAGATTIILSTRQASRRALAEELGATATVDPTAEDVIDAISGPAGLMPGGADVVLECAGVRETVEQSMRLARAGGTVVVVGVTPQGMKAEFEPFDLLFRELKVVGSFLNPYTHRRAAELIASGAIEIERLISRQVPLEEAADVIANPPAPGEVKVLVVPGLG
>NZ_CP033334.1|WP_056569207.1|383424_384531_-|TRAP-transporter-substrate-binding-protein
MDRRSFIRKAGVTGLGAAAAATLAAPAIAQSNPKVTWRLASSFPKSLDTIYGGAEVFSKMLSEATDGNFQIQVFAAGELVPGLQAADATTAGTVEACHTVAYYYWGKDPTWALGAAVPFSLNARGMNAWHYHGGGIDLFNEFLATQGLFGLPGGNTGVQMGGWFRKEINTVADLSGLKMRIGGFAGKVVQKLGVVPQQIAGGDIYPALEKGTIDAAEWVGPYDDEKLGFYKVAPYYYYPGWWEGGPTVHLMFNKAKYEELSPTYKSLLHTAAQATDADMLQKYDYVNPAAVKRLVAGGAKLRPFSQEIMAACFEKANEVYAEMEASNAPFKKIWESIKGFRKEHYLWAQVAEYNYDTFMMVQQRNGKL
>NZ_CP033334.1|WP_056570339.1|384795_385569_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MQQPLVAISTDVRQFDNYTWHAAPQQYLEAAITGAGVFPLLVPSFGDRLDFDELLSSVDGVMVTGSKSNVHPSLYGGDASEANGPYDPARDATTLPLIRRAIERGVPLLAICRGIQELNVALGGTLGTEIQEREGSLDHRAPASDKQDERFAMHQTISIKPGSCLAGVFGAGDIKVNSLHRQAIDRLGSRLEIEAVATDGTVEAVSVKGARAFAVGVQWHPEYWVKSDSNSAKIFRAFGDAVRLHAAAKAGARAAAE
>NZ_CP033334.1|WP_056569204.1|385605_386277_-|porin-family-protein
MKSILLASAILAALPGSAFAADALSSGPAVYEWSGPYVGVQLGYGWGDVDSHDSQIGNGFSDWADSWSSNGVLGGIHLGYNQAYGSFVLGAEGDIEASGMSGSVDSEFAGNIKTKIDVQGSLRARLGYAMGPALLYATGGLAVAHFKTKYDDGGTTDDSSNTKAGWTVGAGLEYAFTQNWTTRVEYRYSDFGKFTDNPATDSGFLYPTEVKTQAVRVGFSYKF
>NZ_CP033334.1|WP_056570337.1|386393_386780_-|hypothetical-protein
MKALSVLIAAAALFGGVQMFQGGGESVAEEAVPSNTYKLVANGDEGACAVTRGAAISDGLSLLTVAPNCRRLLPGIERAKFWRDQNDGTVAFSANGIDPIVAFSVADGDGYESYAPTLPLLSLAVDGH
>NZ_CP033334.1|WP_056569202.1|386863_387847_-|2-hydroxyacid-dehydrogenase
MTRADQLQAVAILVPADFSDHAVRRIDRTFKQVRIERADPALVTEEMRRTVRGIASFAGISAAMMDALPNLELIASFGVGYDSVDVAHAAAKNIMVTNTPDVLTEEVADTAIGLLINTIRDLPRAENWLRDGSWVRKGNYPLSRLTLRARRVGIFGMGRIGRAIARRLEAFGLPVAYHNRLRVEGLSYQYHPTLKGLAEAVDTLISVAPGGASTQKAVNAEILSALGANGVFVNIGRGSTVDEAALAAALADGTIAAAGLDVFADEPNVPKALLDAPNTSLLPHVGSASEHTRRAMADLCVDNLVSWFTERRALTPVPETAHVKDRG
>NZ_CP033334.1|WP_081294945.1|387843_388866_-|LacI-family-DNA-binding-transcriptional-regulator
MAQKIKLSTIADALGVSTATVSLALRDSPLVAGSTRDRIKEHARAIGYIYNRRAASLRTSRSGIVGVVVHDIMNPFFAEILRSIESELDRSRQTFILSNHYDQLEKQRTFIDTLLQLGADGVIMSPAIGTPASDILMAEENGLPAVLIARTVEGADVPVFRGDDAYGTGLATNHLISLGHKRIAMIGGTDQTSTGRDRYQGYVNAMEAAGLEVRPSWRIAGPRTKQAGFEAAGQFLALKDRPTAACCWNDLVAIGLMNGIARAGLVPGIDISVTGYDDLEEAAIATPALTTVWNGQREVGRRAASALLDKLNGQTVRPSQELIKPELHVRQSTGRPVERT
>NZ_CP033334.1|WP_056570335.1|388944_389829_-|DMT-family-transporter
MLATYVFFTFLDTSSKYLVLAGVSALIVAWVRFAVHVVLVGALLRGWRQPMRFRPVNLPAHVLRGVFLFGSTMCNILALRSLQLAETTSIYFFGPMVITALAGPLLGEWAGWRRWLAILAAFAGVLIITRPGVGVFGIGHLFALGSMLSNSFYVIMTRRMSATETSESLILFSALAPAVLLLPMLPFSFSLPHDGWHWFVLLMLGVFGGVGHWLLVQAYRLATTTALAPYPYSQMVWMIISGWIVFKQFPDRWTLVGAAIIVASGLYIVHREHRLRLRSRAASDVEAEALAKKL
>NZ_CP033334.1|WP_056570333.1|390027_390435_-|DUF2000-family-protein
MFDTKFAIVLREDLPVWQKLNVTAFLASGIVAQFPDIIGEPYRDRAGNLYNPLSIQPVIVLSADQATISAIQRRALERGATTSLYVEEMFSTGFDAANRAVFAEFAPEDAKVVGVALRADKKLVDKITKGARMHA
>NZ_CP033334.1|WP_056569195.1|390441_391359_+|AraC-family-transcriptional-regulator
MDHSRLSPHREAEGDDALELDRQAFEGLGRLCADAAENCIISASDPAGMERIEARFHGSAFDLHRHDTYAIGVTLQGVQTFRYRGAARQSLPGQIIVLHPDEMHDGGAGTEDGLRYRMLYLEPSLMLDCLGGASLPFLGEAVVSDDAFCATLLSALGPLQQELDELFVDDFLTQLMQSLARHAGQPAKPMARTAWRAAALARDYLTENVTRPVRSGELEAITGLDRYALSRHFRAAFSTSPHRFLVMRRLQRARRMIIAGEPLAQIAVEAGFTDQSHFNRQFKKAFGMTPGRWSSLSRDSAPAAA

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Crispr_ID: NZ_CP033334_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033334_2

4957620-4957707

Orphan

Consensus_repeat	Method
GCAAAACCGGATTCCACTTTTGCTGATCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033334_2

>merge|NZ_CP033334|2|4957620-4957707|CRISPRCasFinder
GCAAAACCGGATTCCACTTTTGCTGATCGCGAACTCCTGGTTGCCGCGCGATCGAACGCAAAACCGGATTCCACTTTTGCTGATCGCG

>NZ_CP033334|2|2|4957620-4957707|CRISPRCasFinder
GCAAAACCGGATTCCACTTTTGCTGATCGCG	AACTCCTGGTTGCCGCGCGATCGAAC
GCAAAACCGGATTCCACTTTTGCTGATCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033334.1\|WP_056562284.1\|4953142_4953793_+\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225366
NZ_CP033334.1\|WP_056562306.1\|4964243_4965239_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP033334.1\|WP_056562312.1\|4966939_4968178_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NZ_CP033334.1\|WP_056565408.1\|4947259_4948528_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP033334.1\|WP_056562321.1\|4970724_4971489_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP033334.1\|WP_056562278.1\|4948553_4949309_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP033334.1\|WP_056562309.1\|4965542_4966847_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP033334.1\|WP_056562295.1\|4956673_4957408_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP033334.1\|WP_056562315.1\|4968164_4969343_-\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|274380
NZ_CP033334.1\|WP_056562298.1\|4957777_4959031_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP033334.1\|WP_056562281.1\|4949336_4950854_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP033334.1\|WP_056562290.1\|4954658_4956308_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP033334.1\|WP_056562287.1\|4953811_4954633_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239483
NZ_CP033334.1\|WP_065005067.1\|4959129_4962510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372485
NZ_CP033334.1\|WP_056562318.1\|4969561_4970728_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP033334.1\|WP_056562293.1\|4956348_4956681_-\|lipid-A-disaccharide-synthase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|226461
NZ_CP033334.1\|WP_056562303.1\|4963104_4964247_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|227940
NZ_CP033334.1\|WP_027042409.1\|4952446_4953121_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP033334.1\|WP_056565414.1\|4962605_4963073_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
NZ_CP033334.1\|WP_056565411.1\|4951041_4952205_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029

Protein	Function_ID	Function_description	E-value
NZ_CP033334.1\|WP_056562284.1\|4953142_4953793_+\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|225366	COG2808, PaiB, Transcriptional regulator [Transcription].	3.70461e-103
NZ_CP033334.1\|WP_056562306.1\|4964243_4965239_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	2.15552e-43
NZ_CP033334.1\|WP_056562312.1\|4966939_4968178_-\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	9.05612e-142
NZ_CP033334.1\|WP_056565408.1\|4947259_4948528_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	2.92892e-119
NZ_CP033334.1\|WP_056562321.1\|4970724_4971489_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.03936e-97
NZ_CP033334.1\|WP_056562278.1\|4948553_4949309_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	8.84992e-143
NZ_CP033334.1\|WP_056562309.1\|4965542_4966847_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.26025e-42
NZ_CP033334.1\|WP_056562295.1\|4956673_4957408_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.80892e-46
NZ_CP033334.1\|WP_056562315.1\|4968164_4969343_-\|M24-family-metallopeptidase	gnl\|CDD\|274380	TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.	2.00105e-149
NZ_CP033334.1\|WP_056562298.1\|4957777_4959031_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP033334.1\|WP_056562281.1\|4949336_4950854_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP033334.1\|WP_056562290.1\|4954658_4956308_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	7.97135e-74
NZ_CP033334.1\|WP_056562287.1\|4953811_4954633_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239483	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.	1.44581e-61
NZ_CP033334.1\|WP_065005067.1\|4959129_4962510_-\|hypothetical-protein	gnl\|CDD\|372485	pfam13116, DUF3971, Protein of unknown function. Some members of this family are related to the AsmA family proteins.	3.6352e-05
NZ_CP033334.1\|WP_056562318.1\|4969561_4970728_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	9.17115e-55
NZ_CP033334.1\|WP_056562293.1\|4956348_4956681_-\|lipid-A-disaccharide-synthase-N-terminal-domain-containing-protein	gnl\|CDD\|226461	COG3952, COG3952, Predicted membrane protein [Function unknown].	8.80682e-50
NZ_CP033334.1\|WP_056562303.1\|4963104_4964247_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|227940	COG5653, COG5653, Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane].	3.29012e-113
NZ_CP033334.1\|WP_027042409.1\|4952446_4953121_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	8.75563e-121
NZ_CP033334.1\|WP_056565414.1\|4962605_4963073_+\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	8.59515e-77
NZ_CP033334.1\|WP_056565411.1\|4951041_4952205_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	1.47669e-143

>NZ_CP033334.1|WP_056562295.1|4956673_4957408_-|glycosyltransferase-family-2-protein
MPDALISIVIPCRNEAANLPLLIDEIETAMAGRDFELIIVNDGSTDETAAVLTEQAALRSFPVRELRHQKSAGQSLSVRSGAWAARGGIVATIDGDGQNDPQYIPVLVDALRRAGPDFGAAQGQRLKRRDSKVKQLASRFANWLRNAILHDETRDTGCGLKAVHTDILRKLPFFDGTHRFVPALVIQEGYRVVHCDVVDRSRRHGKSNYGIFDRGLQGALDLGGVWWLRRRRRRMPKVEEIKRV
>NZ_CP033334.1|WP_056562293.1|4956348_4956681_-|lipid-A-disaccharide-synthase-N-terminal-domain-containing-protein
MFNVLQELATWLHQVFIKQFDAWVLLGFIAQFFFTMRFVVQWLASEKAKRSVVPVAFWFFSLFGGGLLLIYAIQRQDPVFIAGQAMGMFIYIRNLWLIANERKAAMTKVD
>NZ_CP033334.1|WP_056562290.1|4954658_4956308_-|glycosyltransferase-family-39-protein
MALNRNYIFLFLFSLVMTVSGLASLPPIDRDESRFVQATKQMAESGDYVDIRFQDASRYQKPIGIYWLQSAAVTLSGKGAEAPIWVYRTVSALGIAIAVLAIAWTGTNLFGANAGLAAGLVMAAIFATAFEGRDAKTDAMLLACCVAAQGALAQIYLSARRNEPVAGHLWWIFWIAQGAAILIKGPIAPLLSALTIAVLFAFERDGRWLSKLRIGRGLLLVVVIALPWLAAITWKSHGAFLQQAVGKDMLGKVASGEESHGLPPGFYMLTYSLFMWPFGLIAVSAGLQALNRLRDDPRLRFCLAWYIPFWLVFELIPTKLPHYVLPAYPGMALLIGWLLTLQPQDANAPLRRWQQWLWWSTAFGLAVVSLGLAAVCMGAPIYLTHTFSWWSIPAAAAALGTGYLGFSRQLQVPLPRIGATAACAGITYALLFGVIAPSLKPIWLSPAIRQAVLANKACDTTVLASARYQEPSLVFLVGTKTVLTDIGGVAEHLLADPGCALGLAPIEDEQKLNGMLSVRGKSVNRVAEIDGLNYSSGDKLSLGLYRIAQ
>NZ_CP033334.1|WP_056562287.1|4953811_4954633_-|phosphatase-PAP2-family-protein
MLVKSRPPVSGRLLGTGRRSVDNFLDTMRIVRGRFAARPARYPNIVWSVWGLGWVLLTAAAFVRLDTPAGMLRDQWSPGFVRLADFFTQFGLGGWYLIPPALLLVAANLIDWRSLSRRSLMLAYNWTCLAFLVLSAVGLSGLTVNVLKYAIGRARPLYFQDFGVLALHPFAFDARFAGFPSGHATTMGAVFGVLLLLFPRRWYMALAVTACIASTRVFVGAHYPSDTVAGFGLGCAFALACGVVFARLGFIFRPTQSGLPVRKASFRLVAPER
>NZ_CP033334.1|WP_056562284.1|4953142_4953793_+|FMN-binding-negative-transcriptional-regulator
MYEPPHFQETRPDVLHGLIRSHPLGMLISNGPDGPVADAIPFLLDAGASPNGRLRAHLAKANPHWKLIVGNPSSPVLIVFQGTDAYVTPSWYETKRETGKVVPTWNYAIVQVRGTAKVIDDQDWLAQQIADLTISQEGPREAPWAVTDAPPPFIQSQIKGIIGLEIEISEIHGKWKVSQNRPVADRAGVAQGLESETANSSDMARLVRSYGGLDSN
>NZ_CP033334.1|WP_027042409.1|4952446_4953121_+|alpha/beta-hydrolase
MPEVIFTGPAGRLEGRYQPSKEKSAPIAIVLHPHPQFGGTMNNKIVYDLFYMFQKRDFTTLRFNFRGIGRSQGEFDHGTGELSDAAAALDWVQSLHPDSKSCWVAGYSFGSWIGMQLLMRRPEIEGFISIAPQPNTYDFSFLAPCPSSGLIIHGDADKVAPPKDVQGLVDKLHTQKGITITQKTLPGANHFFANDADLLIEECADYLDRRLAGELSDPRPKRLR
>NZ_CP033334.1|WP_056565411.1|4951041_4952205_-|cysteine-desulfurase
MAAKRAYLDYNASAPLLAAAREAMVAALDVAANPSSVHAEGRAARRLIETARREVAALVNARPEHVVFTSGATEAASTLLSPDWRMGRGSVRMSRLYVCEADHPCLLNGGRFPAAQMTRIGVDADGIADLAALATALSGHDKADGLPLVAIHAANNETGVIQPIDRIAAIVKAAGGILVVDAVQATGRVSIDMSAGYADYLILSSHKIGGPKGVGAIVAAADLMMPKPLINGGGQEKGHRGGTENLAAISGFGAAACEAVAGLPTIDMVRERRDEIEAIVKMLVPDAEIFGTGAPRLANTTFFAIAGVKAETAQIAFDLAGVALSAGSACSSGKVGPSHVLKAMGYGDSLGALRVSIGPATGAEDVELFRSALAGIAARRAGKEKAA
>NZ_CP033334.1|WP_056562281.1|4949336_4950854_-|Fe-S-cluster-assembly-protein-SufB
MPAVQDTIDRVRKIDVDQYKYGFQTEIAVDKAPKGLSEDIIRFISAKKDEPSWMLEWRLEAYRRWLTLEEPTWARVHYPKIDFQDVYYYAAPKSTPGPSSLSDVDPELLKVYEKLGIPLREQEILAGVQKTDASDLEEPSDNVYKSGRVAVDAVFDSVSVVTTFKKELAQAGVIFCSISEAIREHPELVQKYLGSVVPTSDNFYATLNSAVFTDGSFVFVPKGVRCPMELSTYFRMNEKNTGQFERTLIIAEEGAYVSYLEGCTAPQRDENQLHAAVVELVALDDAEIKYSTVQNWYPGDAEGKGGIYNFVTKRGDCRGDRSKISWTQVETGSAITWKYPSCILRGDDSSGEFYSIAVSNGYQQVDSGTKMIHLGKNTSSRIISKGIAAGFSQNTYRGQVSAHRKATNARNFTNCDSLLIGDQCGAHTVPYMEAKNSTAQFEHEATTSKISEDQKFYVMQRGIPEEEAIALIVNGFVKDVIQQLPMEFAVEAQKLIGISLEGSVG
>NZ_CP033334.1|WP_056562278.1|4948553_4949309_-|Fe-S-cluster-assembly-ATPase-SufC
MLEIRNLHARIVDDGTEIIRGLNLTVKAGEVAAIMGPNGSGKSTLSYILAGREDYEVTEGDILYNGQSILEMDPAERATSGIFLAFQYPMEIPGVATMEFLKVAMNEQRKARGEEPLKIPEFLKRVKEAAASLSMDMAMLKRPLNVGFSGGEKKRAEILQMKLLEPKLCVLDETDSGLDIDALKIVSDGVNALRAPDRAFLVITHYQRLLEHIVPDSVHVLYKGQVIKSGDKSLALDLEANGYAGVIGEAA
>NZ_CP033334.1|WP_056565408.1|4947259_4948528_-|Fe-S-cluster-assembly-protein-SufD
MNMHTQPQRTPAETALIDAFGDRLSLLPGDGAVMLKRDDAIEAIKHGLPTRRVESWHYTDLRRLLNAVPDFDPAAMAKAVAPIVEGSAVLPVLNGKSDAKVPDIEGVTIQRLSDKLIDGSIAPGLDPYGADDAIGALNTAFVADGYFVDIADGTELEKPIELQNIQAGGQTHVRLPVRVGAGAKAVIVERQAGDGAALVSSVSQLVLGEGAEVTWLIVQEQPETATHLAQFKAHIGKNAKLTLFVMNAGGKLVRQEVMVRTTGEGADFKLRGINLLAGDTHSDVTMVLDHAVPHTTSTEIIRNVVTGKARGVFQGRINVHQYAQKTNAKMACNTLLLSDDGEFSTKPELEIFADDVVCGHGATVTEIDHDHLFYLMARGVDEKSARGLLVKAFVAEVIEELDDEAIVEALEARLDDWFLTHG
>NZ_CP033334.1|WP_056562298.1|4957777_4959031_+|tyrosine--tRNA-ligase
MPAFKSDFLRTMSERGFIHQISDETGLDQLFAKETVTAYVGYDATATSLHIGNLISATMLYWLQETGHRPIALMGGGTSMIGDPSFRDDQRSLLTPEAIATNIEGIKRIFGRILRFGDGPNDAIMVNNADWLMKLNYVEFLRDVGRHFSVNRMLTFDSVKLRLDREQSLSFLEFNYMILQGYDFVELARRQNCRLQMGGSDQWGNIINGVDLGHRMGTPQLYALTTPLLTTSSGAKMGKSAKGAVWLNGDLFSPYDFWQYWRNTEDADVERFLKIFTRLPLDEIARLAALGGSEINEAKKVLATETTAIVHGREAAQLAEETARKTFEEGALADTLPTVKADKAALEAGVGILSLLVTAGLASSNGEARRHIQGGAVRINDQTVSDDRRMVTLQDLSPENVVKLSLGKKKHVLVRPG
>NZ_CP033334.1|WP_065005067.1|4959129_4962510_-|hypothetical-protein
MDQEQPQHEKIRFRRDEITDLGALPSACRVPPLGQASIGRGFRILSRVFAGVVSLVLLAAVVVYLVGASGIGSERLRAEAEIAIERLAGVDVHVAVGPARITLDSSSFVALQVSDVSLKTSDGKPMADAGRVRFGMRLIPLLWGEVRLTSARISDARIVTAAMPSGGDWTAGLRNEDGLVDPEKLSDAVFGNIHQALDAVREDSLRRIDLSNVEFVLPETGAIKLVTITDATVVQSGPGGMEFSSEANVDGRKVTLAASATRDIAAHRVTALTANIDLAAADNTAAGAGKLGAVALKLTGSEGSGANASRLTAAISSAGSVLDLGTRGLLPADFDVDATLVHGSNKIQVDRLLLKTGRSSFNFGGSIGPKPATGEAGEEPSYRYDLTSDGSTLAPSESPEPALPFIARIAGVYQTKSHKLVAEQIAVRSDASGEVLGTAAVEFVDGKAPGVNLALNVHDMLVSHVKQLWPWFSARNARLWVLDNLFGGRVVDANLQFQVVPDRLGNGVPLSADEVFGRFQIEGARFDTAGRIPPIRDAVGVVAFHGNDVDISLSSGTVFMPSGRTVAASNGTLSVKAANHPPVIGALDIDVEGEASAVAELASYEPINAMRHVGFLPEDLSGSVTGHVRADIPLQSGVDTSKLDWLVSLDYTGLSLAKPFEGQTVTDADGSITVDPVKAVISAKASLNNIPAELDLVEPLADDGPPRSRKVALVLDDKIRAAAMPGLTPMLGGTVKVAIDKSGSGNQNVSADLTNARLDIPWAGWSKGAGVPASVTFVMTKSGDTTTLSDFNLDGKTFSIDGGIVLVNGALSSAKFSKVTLNRGDDVAISVKRSGKGYAVDINGNALDARSLIKQFMSDVDTATKTTGTDNISVSADVGQLTGFHDEQLSNLKLDYSAAGSRVNGLKVSATASSGAAIAVSNTAGDGRRSLNVQSADAGAILRFLNIYEHMEGGSITLALAGAGDGPMRGKVDTSNFFIVNEPKLASIVSTTPAGDNRSLNQAVKGNLDTSRVKFERGYAEIEKGSGYLKLANGVLRGPRIGTTFQGILYDQNNNMDMTGTFMPVYGLNRIFGELPIVGALLGNGRDRGLIGVTYRLRGNANKPVLDVNPLSVIAPGIFRSIFEYR
>NZ_CP033334.1|WP_056565414.1|4962605_4963073_+|peroxiredoxin
MADLDVGDLAPQFDLPRDGGGSLNLAASAGKPVVLYFYPQDDTTSCTQEAISFSQLKPDFEKAGAVVIGLSPDPVKKHDKFKSKYNLTIDLAADEERKVIEAYHLWVEKSMYGRKYMGVERATFLIGRDGRIARIWRKVRVKGHAEEVLEAVRAL
>NZ_CP033334.1|WP_056562303.1|4963104_4964247_-|GNAT-family-N-acetyltransferase
MNAPFVLAIPRTRTFEVVTSAERLAEITPAWSALWRRVDGLVFQHPEWIAAWWRTTPQQELRTLRIGLAWNGDRLDGVIALATFKRSGIRMLEWAAKDHSDYGDALLAPDCNPQALSRLWQYVLDQGGFDLVYLNRLLPDAGVGALLDPASRHGKALRPNHRSEISYRVAGPWQGGAKWFETLSKKARQNYRRGRKFMEEGGELRFRLLDADEPREPVLARVAALKRLWLARHGRVSDLFDEGSPVLAALVSVLAKLGLLRIFVLELNGTIIAVSINFEQHGTMMAFVTTYDPEYERASPGMVLMMDYIQWSLDRGLAKVDFLCGGEDFKRRFATESVTLWSMMGARGLRGHLAALADHANHVAKSWRARRQPKAEASDE
>NZ_CP033334.1|WP_056562306.1|4964243_4965239_-|sterol-desaturase-family-protein
MLSDLVGKILDKISGTGLLATGLLLLTAFVSALVAYWRTVETKSWKEFFEFAIPHEAITHPSAKADLLFWVTKKALMPFLMLPAGIVFVTAVGYATNWLFSTLFQFQPPLIEGPAGPVTVLVFTITMLLAYDISYYLYHVAQHRYPLLWELHKVHHSAEVMVGITKDRVHPLDELMNRAWDGLIVGVCFGIWSLISLNLVELTVFGVNVYVMRNILMMDFVRHTHFKISFGPLNNVILCPHWHQLHHSTDPRHYDKNFGLLFSFWDRLFGTLCVPKPDEDFKFGLIDRDVRDYQSLAGLYLMPLKRMWRHIARRMRPGKPRTSRSSEGTRP
>NZ_CP033334.1|WP_056562309.1|4965542_4966847_+|M23-family-metallopeptidase
MNATGQSAVFGRRKEPHTVIIARGNEIRHFTIRPWLAAFIGSALAAIAIGYLLATSYLVLRDDLIGATTARQARMQQAYEDRISALRAQVDRITSRQLLDQQLMETKVSELLERQTQLSQRHGRLGPLLERAENEVGTEPVEDPATAAKPDKHADVTGSISQPAPNYAVASLGVDLGAADTRPFSLWSTRTDPLPSDSAADRADKLFVSINQSLKSIENEQLTRISTLADNAYKSADAIQQALAAAGLPVDSDFGKNESDVGGPLIPLDSSMIFDSKVKELDEALDTLDQLKKEARRLPLANPAPGHSVTSPFGVRTDPILGTAALHSGMDFRAPIGMAAKVTAPGIVTKAGWNGGYGRMVEVDHGNGFATRYGHLSEIDVTVGEKLDAGAIVGKTGSSGRSTGPHLHYEVRHNGEAIDPLRFLTVGKKVAQYL
>NZ_CP033334.1|WP_056562312.1|4966939_4968178_-|amidohydrolase
MSNPEGSAMAGDVAGPGAVDIDAGLLDRMIEIRRHLHRNPELSNREADTQRYLRQKLAGEGITDIRDVAGFGLAVDIVGTGKPSNRKIAIRADIDALPIEEESGVDYASTNPGVMHACGHDAHASMGFAVAAHLHQSRADFGGTVRLIFQPAEEDSPSGGKRVVEEGLLDDIDAAICLHVDPYTPSGKIAVRSGPYTLACDTFDAVVIGEAAHAAKPYEGIDAIAVACSMVSELQKIVSREIDPYDPLVISVTGINGGSAYNVIAGKVTLKGTIRSGSDATRERAWRRVREILESTAASHGASVELAIHKGEPGVVNDAEMAELVVASGKACIGADNVLNTPGWAIADDFGYYSEKRPSVYFRLGIRNEQVGSVFPLHHPKFRVDEAALKIGAATLIAAATGFLSIQPGSTD
>NZ_CP033334.1|WP_056562315.1|4968164_4969343_-|M24-family-metallopeptidase
MIELPFARDEYQQRLRKIRAEMARRGLELLVVNDVASQHYITGYDGWSFYTPQVVLVPLEEVEPVWIGRAMDAAGGLLTAWMKPENVVGFPEDHVQRADRHPMDWIANWIAARGWGARHIGIELEAYYFSPKAHARLVAGLANAKWHDADLLVNWIRAVKSAPEIAYLRKASILAEAAVTRAFEVIAPGVRECDAIAAIQAAQIAGSRDFAGDITALPPTILGGENASAPHIMWSDRRFGDNETIALELAGVCRRYAAGLARTMQLGKTPARVSDTAKAVIEGMDAVLDAVRPGTSAEAVEGAWRKVIQRYGLKKESRIGYSIGVAYPPDWGEHTISLRPGDKTVLQPGNVLHSILGMWMDGWGIEVSETILVTETGHETLTKFPREIHVKS
>NZ_CP033334.1|WP_056562318.1|4969561_4970728_+|ROK-family-protein
MALRGTNQEFGRPYNRRIVLESIRLHGPIARGEIANRVGLTVQTVSTIVRELEEQGYILSVREEPKGRGLPPATLRINPEGGYAVGIHITPLGINAALINLSGDVIESTYREAPNATPDHAFDLIGAMAIELTRLRAGGRVLGVGLALPGPFGVESMSFVGPTTMSGWKDVALRERLAASTGLPAFFETDMAAAAMGERLYGLGAQFSEYYYLYFGVGLGGVMVHDGSPLRGAWGNAGEVGHIPVVPGGEACPCGNRGCLERYLSLEALRRWNGSEADWVAEVAPIFHNAIAVIENLFDPETVILGGLASTDLLERLAGSTEGLHNSVSAREDRTTPRVMVARGGQHSVLRGAAALAVSGVLSPRFGQMFTAERERGRDLLAPKEIAA
>NZ_CP033334.1|WP_056562321.1|4970724_4971489_+|sugar-ABC-transporter-ATP-binding-protein
MSEPLLVLDNVTKNYGAIEALKGISFSIGKGEVVALLGDNGAGKSTLVKIIAGGLEPTSGRMLFEGKEFLARSPAEAKAAGIETVYQDLSLCTNVDVVANFFMGREITRKVLGIPVLDERAMEAVVAKALASAGTRIPSLRTNVEHLSGGQRQAIELNRFVHWGGKLVLLDEPFAALGVEQTRRGLDMIRQVASQGIGVVIITHIMQQAFQVADRIVVIRQGVVAGDVARNKTSPDAVINMITGETLAGAGPAG

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Crispr_ID: NZ_CP033334_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033334_3

5140356-5140426

Orphan

Consensus_repeat	Method
AAACATCGGGACCACGGGTGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033334_3

>merge|NZ_CP033334|3|5140356-5140426|CRISPRCasFinder
AAACATCGGGACCACGGGTGTCCCGATGATGATCCGCAAAATCCCCTCAATCATCGGGACCACGGGTGTCC

>NZ_CP033334|3|3|5140356-5140426|CRISPRCasFinder
AAACATCGGGACCACGGGTGTCC	CGATGATGATCCGCAAAATCCCCTC
AATCATCGGGACCACGGGTGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033334.1\|WP_056562607.1\|5131992_5133414_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|182502
NZ_CP033334.1\|WP_065005001.1\|5139701_5139884_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_065004993.1\|5145095_5145611_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_056562610.1\|5133419_5134217_-\|RlmE-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223370
NZ_CP033334.1\|WP_065004992.1\|5145616_5145835_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_065005004.1\|5137269_5138514_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP033334.1\|WP_065005005.1\|5135989_5136922_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NZ_CP033334.1\|WP_081294702.1\|5142212_5143382_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_CP033334.1\|WP_065004997.1\|5141451_5142210_+\|HK97-family-phage-prohead-protease	unknown	unknown	gnl\|CDD\|273682
NZ_CP033334.1\|WP_065005002.1\|5139373_5139571_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP033334.1\|WP_155772394.1\|5139567_5139705_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_065004998.1\|5140931_5141180_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_056562604.1\|5130207_5131710_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP033334.1\|WP_155772391.1\|5144532_5145093_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237011
NZ_CP033334.1\|WP_155772392.1\|5143885_5144428_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_155772390.1\|5145848_5146067_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_056565441.1\|5134213_5135578_-\|Ppx/GppA-family-phosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_CP033334.1\|WP_155772395.1\|5138586_5139207_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_065004996.1\|5143512_5143884_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_065004999.1\|5140492_5140798_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP033334.1\|WP_056562607.1\|5131992_5133414_+\|MFS-transporter	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	9.53645e-94
NZ_CP033334.1\|WP_056562604.1\|5130207_5131710_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP033334.1\|WP_155772391.1\|5144532_5145093_+\|hypothetical-protein	gnl\|CDD\|237011	PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional.	0.00596817
NZ_CP033334.1\|WP_056562610.1\|5133419_5134217_-\|RlmE-family-RNA-methyltransferase	gnl\|CDD\|223370	COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis].	1.5448e-104
NZ_CP033334.1\|WP_065005004.1\|5137269_5138514_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.36995e-24
NZ_CP033334.1\|WP_065005005.1\|5135989_5136922_+\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	3.74408e-41
NZ_CP033334.1\|WP_081294702.1\|5142212_5143382_+\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	4.48998e-94
NZ_CP033334.1\|WP_056565441.1\|5134213_5135578_-\|Ppx/GppA-family-phosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	9.18913e-113
NZ_CP033334.1\|WP_065005002.1\|5139373_5139571_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.50435e-06
NZ_CP033334.1\|WP_065004997.1\|5141451_5142210_+\|HK97-family-phage-prohead-protease	gnl\|CDD\|273682	TIGR01543, Putative_prohead_protease, phage prohead protease, HK97 family. This model describes the prohead protease of HK97 and related phage. It is generally encoded next to the gene for the capsid protein that it processes, and in some cases may be fused to it. This family does not show similarity to the prohead protease of phage T4 (see pfam03420). [Mobile and extrachromosomal element functions, Prophage functions, Protein fate, Other].	2.20288e-21

>NZ_CP033334.1|WP_065005001.1|5139701_5139884_+|hypothetical-protein
MTAPLSPTDHAAAVAWLKANWSAAERPLVPMIRERFGAGPIEAVAILREASPHGRREATT
>NZ_CP033334.1|WP_155772394.1|5139567_5139705_+|hypothetical-protein
MIAAGVVLLLVAGLLRTRLVRLTLALWLLRVGNVLIEAAERAMER
>NZ_CP033334.1|WP_065005002.1|5139373_5139571_+|helix-turn-helix-domain-containing-protein
MEPTGKSNLDLIWGADAIAAELGCDRRRAFYLLEKGEIPAKKVGGKWVVRRDELHAFFVNSGAAA
>NZ_CP033334.1|WP_155772395.1|5138586_5139207_-|hypothetical-protein
MDGVEIVPLHLVQETSTTETKFVCARSDESEPVIYEITNLENPLAIRLINTVSDEDLVAFVSRFGLPQKLVTPFQVSVTSLETLKEDLGEVLGLGAFPDSVEKARHVNDVLKYVSLAPSFEYADGRNKLVMRPTDLANLMMMEAVFAYEVGATLSRCAHCSKAYLTGPLTGRRSHAVYCSDRCRVAAMRKRNASAGKHQELTVLAK
>NZ_CP033334.1|WP_065005004.1|5137269_5138514_-|tyrosine-type-recombinase/integrase
MVSTRKRTWQPAKGRAKEAWIVDYFDLNGTRRQKTFDKKKDADRFEEQVKQELRTGIHVAEADTITVKQAGANWITDCEQLGLERSTRESYQTHLDLHITPFIGELLLTKLNIPTIRNWQKRLHDEGRSANLIKRVTVDLGAILAVAQDGGFVARNVVYESNSRVRAKKKKIEKRRTRKLGYGIDIPTHDEIRTIIDHTAPRHKPLMITLVFTGMRSSEIRGLPWSAVDFERQCIRVSSRVDRYGVMGFTKSQEGQRTIRVPPIVINTLKEWKLQCPKGQRDLVFPNGDGNLENHGNVIKRILHPAEIAGGVTVLKPKVDEEGNPILDERGEPIIETVAKYPGLHAFRHFFASWCINRKSAGGLELSAKEVQHRMGHSSIQQTMDTYGHLFPAVDEHESLAEASRHLLPALRAT
>NZ_CP033334.1|WP_065005005.1|5135989_5136922_+|UPF0104-family-protein
MNWRRYFWPVVGIAAVIFSLLLLWHELRGISLDDVWDGLAAIPTRGWILAALSSVIAYAALAGYDHIALLHIGKRVSWLFVTLCSFTTYALSHNIGGSVFSGAVIRYRAYGTRGLTGQDVGVLVAICWITFVLSTILAFGLVLVFEPQIIDRFSGIAHHGLSEAAGIAMLLVVAAYVFGSWLHLRPLKIASFQLHYPALPIVARQLLIGPIELLAAAAIIFFALPEAHNPGYFVVLGVFLVSFSVAQISHAPGGLGVFEVVFLAGLSDMEPVGVLAALLVFRLFYLIIPLFLGLGIVLFFERSQFSRTES
>NZ_CP033334.1|WP_056565441.1|5134213_5135578_-|Ppx/GppA-family-phosphatase
MEDRDTGAGASEVGASSASPGPSGSGTAGWQQRRPTEPRSADGQAGDATHHQKGKPKKRRKRRRGRKVFARDEAQDNRSPVPGKAAASAVEPKQPPAGPVISPVLQMPRHEQGTRRQPAHELPVFAALDLGTNNCRLLVAVPTRHGQFRVIDAFSRIVRLGEGLTANGRLGKPAMDRAVEALKVCGDKLRGRKIRKARLIATEACRSAENGVEFLERVEREAGLKLEIIDRQTEARLAVSGCGSLVERDTQGVVLFDIGGGSSEIALIDLTGRRSPRLANHIVSWTSLPVGVVSLAERFGGRTVTREIFTAMVDDVAGRLASFDGRDRLSHLKASPNFHLLGTSGTVTTLAGVHLDLERYDRRRVDGLWMDRDSVDRMVERLVGWDFQQRCANPCIGADRADLVLAGCAILEAIRAVWPSERLRVADRGLREGILSELMADDGVWRNDGRGGRQ
>NZ_CP033334.1|WP_056562610.1|5133419_5134217_-|RlmE-family-RNA-methyltransferase
MTKKPENPGSAGIRVLKTRIKKKSGLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLIEIDDKHHLLKPGMKVIDLGAAPGGWCQVAAARTKSTAENPHVVGIDYLEMDAVPGAPVLLMDFLDPDAPRKLSEALGGDPDVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKTFQGGAENELLSMLKKNFRSVHHVKPPASRDESVELYLLAKDFKGRESGPPSGGSERPADVPKGMGARSHSEGPGDGEA
>NZ_CP033334.1|WP_056562607.1|5131992_5133414_+|MFS-transporter
MNRTIPLILAVALFMENMDSTVIATSLPAIAIDIHTSPIALKLALTAYLVSLAIFIPISGWMADRFGAKNIFRAAIAVFIVGSVACALSGSLPAFVVSRFLQGIGGAMMTPVGRLVLVRATPKSDLVAAMSWLTVPALVGPLVGPPIGGFITTYFTWHWIFLINVPIGLIGIWLATRFLPETESMETPPLDFVGFVLSGVAASGVVFGLSVVSLPYLPPATGFITVAVGLLSGALYLMHARHARNPLLALELFRNQVFRSSVLGGSLFRIGIGAVPFLLPLMFQIGFGLTPFQSGMITFVSAIGAIGMKFVTALIFRVAGFRRVLIVGSLVAAASIAIYGLFTPETPYVLMLAILLVGGFIRSMFFTGVNALSYAEVSAEDTSKATPITAVFQQLSIALGVALAGGILEVSTSIHGGLLTLGDFHIAFFIVAAVSAAASLSFMRLAPDAGNAVSGHGRLTTPKTLEPARSPGE
>NZ_CP033334.1|WP_056562604.1|5130207_5131710_-|IMP-dehydrogenase
MAKIIETSTGALALTFDDVLLQPGHSEVMPGETDVRTRIAGDIDLNVPILSAAMDTVTEARLAIAMAQAGGIGVIHRNFSPAEQAEQVRQVKKFESGMVVNPVTIGPDATLADALSLMRTYSISGIPVVENGGTGGHKTGRLVGILTNRDVRFASDPAQKVYELMTRENLITVKENVDQDEAKRLLHQHRIEKLVVVDKKGNCVGLITVKDIEKSQLNPHATKDAQGRLRAAAATSVGDDGFERAERLIEAGVDLLVIDTAHGHSQRVLDAVTRAKKLSNSVRILAGNVATAEGTQALIDAGADAVKVGIGPGSICTTRIVAGVGVPQLSAIMSAVETAHKSGVSVIADGGIKYSGDLAKALAAGASAAMIGSLLAGTDESPGEVYLHQGRSFKAYRGMGSVGAMARGSADRYFQAEVRDTLKLVPEGIEGQVPYKGPVSGVLHQLAGGLKAAMGYVGGRDLADFRERATFVRISNAGLRESHAHDVTITRESPNYPGGA
>NZ_CP033334.1|WP_065004999.1|5140492_5140798_+|hypothetical-protein
MQLDLFTDMKPAEVKSDGTVRAFPPARRAALVRSTAATIYAKSYQAGRAFWSKHVAQLKRELKAIGIDASGMAVEIDRYTIAVGREIDRLTYSRRRPDGAA
>NZ_CP033334.1|WP_065004998.1|5140931_5141180_+|hypothetical-protein
MNIDPIALRRHRAFGQEMAERHFRLYPADTYPPEVVVDIMRDSMMEPAADAGIGSRALEPYARVAAAGFIRAWRRLQRAARP
>NZ_CP033334.1|WP_065004997.1|5141451_5142210_+|HK97-family-phage-prohead-protease
MTRDTLHDPAQPSFGCIGAPFEVKFASGGARGTFEGYASVFGNTDSHGDVIEPGAFAKSLLDRQREGRALPPMYKMHGAMTGNRHEPIGVWDAMSEDPNGLHVKGRLIGLDTEQGKWNYAQLQEGGLPGLSIGYRVPPGGSRKGSGKLGEPARWIKVANLREVSLVDDPSNVLSRVYDVKRLWGEAPADGIKTVREFQDFLRDAGFSKAAAGILATSGWSSLPANDDSDKAADEIADLIASIQAAKTDLKGR
>NZ_CP033334.1|WP_081294702.1|5142212_5143382_+|phage-major-capsid-protein
MDLDELKTAFTSYHGEVKTIAASQRKLEGEFKKMDDLVAKIEVAMQRIPNGVKLKRDGSFSAPEIEAEHKAFGSFIKTGSEVEIKALSTDEGPAGGYITHTNMATTINQKIFDQSPIRRLARVVPMDNGDAWEEPLDFSDLGATWASERQARTETTGSQLKMLTIPLHEVYAHQSVTQKLLDLSFVNIGSWVEGKISDKFGRTEGLAYNSGDGVKKPRGFMDYAAASVATADDTRAWGVLQNVISGSAASVADVDGQADGIKNLFWSLRAPYRANATWIMSSATANAVDKLKDANKDYIWRPGMTAGAPPSMLGRPVEFDENMPAPGAGLFPIAFGDFQKAYTILDWQAIKTLRDPYTDKPNVIFYAYRRTGGDVANFEAVKLLKCSAS
>NZ_CP033334.1|WP_065004996.1|5143512_5143884_+|hypothetical-protein
MTDNMPELDERALDADPNAEYDRLARAMATPAQLADLEDLPNRVTFLDMDELKEVAIGARKACDQFKATLLETIEDGVETELQAQLVRESMVDEYIFRRTCHILADEFQRRRTGIAPRGKGMN
>NZ_CP033334.1|WP_155772392.1|5143885_5144428_+|hypothetical-protein
MQASARRPEKQRCDVHAVAGQCGIRILKPDQHRNGGRPRECFCPRTLKRIGQAHGEDHLRQVLRTIVDSKGNAGALQSDVITAVSTVLRSGHVEAGTALFETMDSVDLLELRRWAQAVQGKATLDEILSTVLLFRLAGPEKLIPKPTTKEVARLERNAALKAVRERKKKIRAAGDRQNAA
>NZ_CP033334.1|WP_155772391.1|5144532_5145093_+|hypothetical-protein
MLLPRERGPRAFGNSMPTPLRDWSNYGQEPSRYIRRPSPAAIDRMMLAVDTMNHLADEGDRILVHAWSWQKARRGKFLNDFAAREGVNCRTLRRRISVLCGTMADRLNCARKPAAGASLEEIEAAEAPECAPAPLARSPAFLLAPDARPRHDPDSPELAELAKRIERGNRRREKMRRAANGSERAA
>NZ_CP033334.1|WP_065004993.1|5145095_5145611_-|hypothetical-protein
MQSLLGLTHKRADELVPGELFRFALSSGAGTSLALMLGNNGVDPMFGILASPEFENPLTWYEGASTDRCLSYGMEWLLEERPGPETAPGNTFQPDPKIKLLIDSGATVMRFAPPHGFVHQSINFDLTNGKSGIQLSSRAAPVASWAIWASLDQYKSPRANALFKYPPAATE
>NZ_CP033334.1|WP_065004992.1|5145616_5145835_-|hypothetical-protein
MVFREVIGDKVMHDCDLCGRSVQMGQGLYEGTHLHELDGTFCRGCFSESAFSPAQRAKGVSRIKGLLAKKKG
>NZ_CP033334.1|WP_155772390.1|5145848_5146067_-|hypothetical-protein
MAERQNYNRDHVVSGGMRSGGGGPLTVGDVRNAIADLPDDAEVTFGTCDHGDALKFSRFKTRGENLISIEFG

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Crispr_ID: NZ_CP033334_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033334_4

5341830-5342044

Orphan

Consensus_repeat	Method
GCCAGGCAATTGGCTTTCCGTCCGCTTCGCGGACCGGTTCCCTGCCCTTCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033334_4

>merge|NZ_CP033334|4|5341830-5342044|CRISPRCasFinder
GCCAGGCAATTGGCTTTCCGTCCGCTTCGCGGACCGGTTCCCTGCCCTTCGCTATCGCTGCGGGCGTTCGTCGCTCGGAAAGCCAAGCAATTGGCTTTCCGTCCGCTTCGCGGACCGGTTCCCTGCCCTTCGCTGTCACTGCGGGCGTTCGTCGCTCGGAAAGCCAAGCAATTGGCTTTCCGTCCGCTTCGCGGACCGGTTCCCTGCCCTTCGCT

>NZ_CP033334|4|4|5341830-5342044|CRISPRCasFinder
GCCAGGCAATTGGCTTTCCGTCCGCTTCGCGGACCGGTTCCCTGCCCTTCGCT	ATCGCTGCGGGCGTTCGTCGCTCGGAAAGCCAAGCAATTGGCTTTCCGTCCGCTTCGCGGACCGGTTCCCTGCCCTTCGCTGTCACTGCGGGCGTTCGTCGCTCGGAAA
GCCAAGCAATTGGCTTTCCGTCCGCTTCGCGGACCGGTTCCCTGCCCTTCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033334.1\|WP_056563156.1\|5343542_5344022_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP033334.1\|WP_056563171.1\|5348940_5349537_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198314
NZ_CP033334.1\|WP_056565525.1\|5334277_5336155_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP033334.1\|WP_155772381.1\|5349985_5350456_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_056563142.1\|5337098_5338022_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP033334.1\|WP_056563138.1\|5336902_5337106_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033334.1\|WP_056563159.1\|5344027_5344285_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|224888
NZ_CP033334.1\|WP_056563168.1\|5348221_5348878_+\|porin-family-protein	unknown	unknown	gnl\|CDD\|226163
NZ_CP033334.1\|WP_056563145.1\|5338067_5338904_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373111
NZ_CP033334.1\|WP_056563161.1\|5344286_5344883_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP033334.1\|WP_056563165.1\|5344980_5347050_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP033334.1\|WP_056563151.1\|5340042_5340555_-\|damage-inducible-protein-DinB	unknown	unknown	gnl\|CDD\|225200
NZ_CP033334.1\|WP_056563148.1\|5339015_5339975_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP033334.1\|WP_056563135.1\|5331956_5334065_-\|molybdopterin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|239167
NZ_CP033334.1\|WP_056563166.1\|5347046_5347808_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236389
NZ_CP033334.1\|WP_056565535.1\|5342672_5343437_-\|YbaY-family-lipoprotein	unknown	unknown	gnl\|CDD\|225668
NZ_CP033334.1\|WP_010915217.1\|5342188_5342611_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP033334.1\|WP_081294690.1\|5341396_5341669_-\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NZ_CP033334.1\|WP_081294783.1\|5336291_5336741_-\|MucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227293
NZ_CP033334.1\|WP_056563153.1\|5340621_5341314_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198311

Protein	Function_ID	Function_description	E-value
NZ_CP033334.1\|WP_056563168.1\|5348221_5348878_+\|porin-family-protein	gnl\|CDD\|226163	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane].	1.42023e-31
NZ_CP033334.1\|WP_056563171.1\|5348940_5349537_-\|glutathione-S-transferase	gnl\|CDD\|198314	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs, including Pseudomonas fluorescens GST with a known three-dimensional structure. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Though the three-dimensional structure of Pseudomonas fluorescens GST has been determined, there is no information on its functional characterization.	3.27957e-38
NZ_CP033334.1\|WP_056565535.1\|5342672_5343437_-\|YbaY-family-lipoprotein	gnl\|CDD\|225668	COG3126, COG3126, Uncharacterized protein conserved in bacteria [Function unknown].	7.26508e-57
NZ_CP033334.1\|WP_056563142.1\|5337098_5338022_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.0461e-13
NZ_CP033334.1\|WP_056563135.1\|5331956_5334065_-\|molybdopterin-oxidoreductase-family-protein	gnl\|CDD\|239167	cd02766, MopB_3, The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP033334.1\|WP_056563159.1\|5344027_5344285_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	8.53131e-26
NZ_CP033334.1\|WP_056563145.1\|5338067_5338904_-\|hypothetical-protein	gnl\|CDD\|373111	pfam14527, LAGLIDADG_WhiA, WhiA LAGLIDADG-like domain. This domain is found within the sporulation regulator WhiA. It is a LAGLIDADG superfamily like domain.	0.0095039
NZ_CP033334.1\|WP_056563161.1\|5344286_5344883_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.10914e-42
NZ_CP033334.1\|WP_056563165.1\|5344980_5347050_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP033334.1\|WP_056563151.1\|5340042_5340555_-\|damage-inducible-protein-DinB	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	9.50054e-65
NZ_CP033334.1\|WP_056563148.1\|5339015_5339975_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.22222e-90
NZ_CP033334.1\|WP_056563156.1\|5343542_5344022_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.80391e-59
NZ_CP033334.1\|WP_056563166.1\|5347046_5347808_-\|SDR-family-oxidoreductase	gnl\|CDD\|236389	PRK09134, PRK09134, SDR family oxidoreductase.	4.73826e-145
NZ_CP033334.1\|WP_056565525.1\|5334277_5336155_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP033334.1\|WP_010915217.1\|5342188_5342611_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.72609e-86
NZ_CP033334.1\|WP_081294690.1\|5341396_5341669_-\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	3.76409e-09
NZ_CP033334.1\|WP_081294783.1\|5336291_5336741_-\|MucR-family-transcriptional-regulator	gnl\|CDD\|227293	COG4957, COG4957, Predicted transcriptional regulator [Transcription].	1.08892e-78
NZ_CP033334.1\|WP_056563153.1\|5340621_5341314_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|198311	cd03202, GST_C_etherase_LigE, C-terminal, alpha helical domain of Beta etherase LigE. Glutathione S-transferase (GST) C-terminal domain family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.	3.0013e-63

>NZ_CP033334.1|WP_081294690.1|5341396_5341669_-|DUF2934-domain-containing-protein
MTMADDRQERIRNRAHQIWQEEGQPAGHHERHWHQAAADIDREDAAKPSAAKTPARKASGAGKAKAAPKEEKAATKASKPKTGKPKKAAK
>NZ_CP033334.1|WP_056563153.1|5340621_5341314_+|glutathione-S-transferase-family-protein
MTILLYDLVGRDESRPFSPHCWKATMALAHKGLDVSTAPTRFLEVPTIEGGASKSVPVIRDGDKVVIDSFAIALYLDEAYPDRPTLFGGEGGKAMARFIERWSQLTIHPYVTTAALTDLHAMQDEENAVYFRQSREQRLGKPLEDVVAARDGGLAAFRASLEPLRSMLSYQPFIGGASPLFADYIVFGALQWARIATPYQLLENSDVAAQWFSRCLDLHGGLGRKVAAAA
>NZ_CP033334.1|WP_056563151.1|5340042_5340555_-|damage-inducible-protein-DinB
MKQHFMMFAAYNQWANGRIYAAATDLDEEEFNRDVGAFFGSLMGTLNHLLAADRIWMKRFTGEGDAPTALDAVLHRTLPDLRTAREAEDRRIIDWLAGLSDKALSGRFTYMTVSDMRTVSQRLAPALAHVFNHQTHHRGQAHMILTVLGRPSVQLDLAHFQRTEEGRAFA
>NZ_CP033334.1|WP_056563148.1|5339015_5339975_+|LysR-family-transcriptional-regulator
MRLLSQVNLNSLKIVESAARHGNFTRAGEEQFITASAVSQRVKSLEDQLRFKIFQRGGNAVSLTPEGETYVSRVREALERIVAASMEATGQSQEHVLKISVLPTFAARWLFPRLPLFQRRYPDIVMRVSTSYATHEFTTSDFDLEIRYGDGHFNGLPSDLLFREDLTPVCSRKLFHEVLGDKPLSKVTPDDLKLFTLLHSDTCTQNWQSWLAFSGASFVLSETKSIYFDSCMMSYEAANAGMGFAVANRAYMASDIRAERLVAPFAVHHPNTAGWYFVSPHKSLAARKVQLFKQWVMAEAALTQRQLDSEIRDLAAEAV
>NZ_CP033334.1|WP_056563145.1|5338067_5338904_-|hypothetical-protein
MNAHTIPELRYAMSREAIIGHETAWKVSSFGVAQYLHGYDPALLAAIEEAALKLKASHAVHKHLDLTFITGADRFIPEIKELLHDKLRLERLSDMMGTKLEPYPLSIVGSTVTFMNPRDGAVEWHCDGVPVTELIPLSISDPLVGGHLEIYCDDSETGRAILESGREIPRNRIMRIDHKMKYATLGQFLGVLHRTAPIQYGERVTLVLNQRSVAKPYVDDNRMFYLAADNDHDRQWVNELAEDVWTNQLPAYRRFEAEHPTPAPSAEAQVPGGTRDSW
>NZ_CP033334.1|WP_056563142.1|5337098_5338022_-|DMT-family-transporter
MVKPGDRAPCRFLRHGSGSLSGLVFAAGAVALWSTNALVGKSLLANHPVSQVQFLQFAGAALVLAVIRLMSREKSAPVAGAALASLAVGFIGLVGTMVLQYIAFASMPVIEANLVAYTWPLMVAAAVIVFENPRRPALLGLAAALGFVGVALVISGGRESAWFQGDLVGYFAAFGSALCMAFYSVMVRRLATSPERLLLPSSLVGVALTLLWSAREGVAWPTGVDLALGLYLGAGPMGLGYHLWSRALKLEGSGKVAVIAYLTPIASTLLLTLSGERLTTTAIAGAVLVIGSCIAVGLERSEAQDHV
>NZ_CP033334.1|WP_056563138.1|5336902_5337106_-|hypothetical-protein
MFDEDERLARQEAHWLIKEFGAEAPLYAAMKAEKAIEQKDFGRCARWKRILEILADGRTTKSAGSKY
>NZ_CP033334.1|WP_081294783.1|5336291_5336741_-|MucR-family-transcriptional-regulator
MSNIEDKTVIELTADIVSAYVGNNPLPASGLPDLIASVSASVRKLAGAAVVESPSLVPAVNPKKSVFPDYIVCLEDGKKFKSLKRHLRTDYGLSPDDYRAKWGLPPDYPMVAPNYSATRSALAKSTGLGRKPAAPATVAKATKRGKATA
>NZ_CP033334.1|WP_056565525.1|5334277_5336155_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MLIINDLSLRMAGRLLLDHASLTLPAGTKAGLVGRNGTGKTTLFKAITGDFPSETGSISLPKNTRIGQVAQEAPGTEEPLIEIVLKADLERTALLEEEKTATDPHRIADIHMRLADIDAHSAESRAATILAGLGFDDAAQRRPASSFSGGWRMRVALAAVLFSEPDLLLLDEPTNYLDLEGTLWLENYVSKYPHTVLLISHDRDLLNRAVNSIVHLDQKKLTFWRGGYDQFERQYTEQKELQEKGRVKQEAARKHMESFVERFRAKASKARQAQSRIKALEKMKPIAAIVNDSVRPFSFPEPVKTVASPIVALNNVNVGYTEGQPILKKMTLRIDADDRIALLGANGNGKSTFAKLLSGRLKQETGTMTVAPGLKVAIFAQHQLDDLRPEENAYEHVRRLMPEAPESKVRGRVAQFGLTTEKMNTPAKDLSGGEKARLLMGLSAFEGPNLFILDEPTNHLDIDSRESLIHALNEFPGAVILISHDRHLLEATADRLWLVKDGAVNPYDGDLEDYKTLVTGVSGDRRGKREADKASKADRRRDAAARRAAFEPLAKEIRATEALMDRIRKRIDGIEDELANPAIYEKDPSTATRLAKERSQLAQTLAGHEEKWLTMSAEYEEGTAE
>NZ_CP033334.1|WP_056563135.1|5331956_5334065_-|molybdopterin-oxidoreductase-family-protein
MNQHAKLRIGHSACPHDCPSTCALEVELLDGNRIGRVHGAKANSYTSGVVCAKVARYADRVHHPDRLLKPLVRAGAKGDGLWKEASWDAALDLVAEKFNAAEEKYGSETVWPYFYAGTMGLVQRDGIHRLRHAKKYSGFFGSICTNLAWTGWMMGAGALRGPDPREMAKSDCVVIWGTNAVVTQVNVMTHAIRARKERGAKIVVIDVYENATMKQADMGLVLKPGTDGALACAVMHVLFREGLADRAYLEKYTDDPKGLEAHLRTRTPEWAAGITGLSVAEIEAFARLVGTTRKTYFRLGYGFARQRNGAVNMHAASCIAAVTGSWQYEGGGAFHSNSGIFKLNQDVLEGSRMRDPAIRYLDHSRIGPVLTGASDALYGGPPVTAMLIQNTNPVNVAPEQRLVKQGFLRDDLFTCVHEQFMTDTAKLADVVLPATMFLEHDDVYKGGGNQHITLGPKLIDPPEGPRTNHFVIEELAKRLGVADRPGFGLTEQQHIDIILGKRGLGSFDSLKEQKWVDLQPDFESAHFIGGFGHADGKFRFRADWTGQAAPNRPPKSMGLFGPVERLPEFPDHVDLIEVADEAHPFRLTTSPARNFLNSTFAETPVSKEKEGRPALLLHPDDAADLGLADGDRVEVGNRRGDLVLHAKFFDGIKRGVVIAEGIWPNSAHERGEGINVLTGADAPAPYGGAAFHDNKVWLRKAS
>NZ_CP033334.1|WP_010915217.1|5342188_5342611_+|nucleoside-diphosphate-kinase
MALERTFSMIKPDATRRNLTGAITKMLEDAGLRVIASRRVWMSRREAEGFYAVHKDRPFFGELVEFMSSAPTIVQVLEGENAIARNREVMGATNPANAAEGTIRKVHALSIGENSVHGSDAPETAAQEIKYWFSDTEIVG
>NZ_CP033334.1|WP_056565535.1|5342672_5343437_-|YbaY-family-lipoprotein
MLDRLAEFFVFGFVPLIVGILAVPELSVAAEKAVRGEVIYRERIALPPSAALSVQLVDVSLADAPARVIGEQTIKPTGQVPISFEIKFDPAAIRSQMTYALQARITVDGKLMFISDVRHQLDPLAGAPQTIMLKMVAPGGEPTASVFGQLWVADYVDGFGAITAPQATFRVSEAGKAGGSGPCNAYFATAKVDGQAIAISNIGSTYKACASEVMAEEKALFDALARAASYKVDAGKLTISDKNGREILRFSAAS
>NZ_CP033334.1|WP_056563156.1|5343542_5344022_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MSAVLVPSVRIQRQDFDVAAEIAGLTQGRADIGAVVTFSGLCRDEQGSLSALELEHYPGMAEAEIGRIAAEAVQRWPLQGLTVIHRHGKIAPGQNIVLVVAASAHRQAAFDAANFLMDYLKSRAPFWKKEHRADGSEGGWVEAKEIDAEAAGRWKSPSE
>NZ_CP033334.1|WP_056563159.1|5344027_5344285_-|molybdopterin-converting-factor-subunit-1
MTTRLIYFAWVRERIGTSEEDVELPAGIETVADLLRWLQSRGEGYEHALQYPDVIRVAINQEHVDHREKISGAREIALFPPMTGG
>NZ_CP033334.1|WP_056563161.1|5344286_5344883_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MAQRAFNLPNILTYARIIAVPLVVLCFFLEGHLKSSDFARWLALIIFLLASITDYFDGYFARAWQQTSNIGKMLDPIADKLLVATCLLLLAADTDRHAGIAGWSLWAAIIILCREILVSGLREYLAALKVSVPVTQLAKWKTTIQMVAIAFLLAGPAGDKIFPLTTQTGLVLLWIAALVTLYTGYDYFRAGLKHIMDE
>NZ_CP033334.1|WP_056563165.1|5344980_5347050_-|excinuclease-ABC-subunit-UvrC
MSPLDHKNKVRGGADDLPPEIDLEDEALEEIVEPAGPDVAFTAIDWTPHAGDAEGMVGAEVIQTLVKRLPNAPGVYRMMNAAGDVLYVGKARSLKKRVTNYAQGRFHTNRIGRMVRETATMEFVVTRTEIEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHVSPGIYKHRGARSRKGDYFGPFASAGAVGRTINSLQRAFLLRSCTNSFYENRTRPCLLYQIKRCAGPCTGEISHEGYAELVAEAKDFLSGRSQKVKTEISAAMQQASEDLDFERAAIYRDRLAALSHVQSHQGINPQTVDEADVFAIHQEGGQVCIQVFFFRTGQNWGNRAYFPKADPALEGSEVLGSFLAQFYDDKPTPRAILLSRGVEDQELLAEALSTRAGRKVAISVPQRGEKKDLTDNALQNAREALGRRLAETSTQGRLLAGFAETFGLAKPPVRIEVYDNSHIMGTNAVGAMVVAGPEGFVKNQYRKFNIRSTEITPGDDFGMMREVMERRFSRLLKEHGDVAVADETAAGEAADDIDDDISGSFPAWPDVILIDGGQGQMTAVRKILADLGIEDRVVAIGIAKGQDRDAGRERFFVKGRDSFSLPVRDPVLYFVQRLRDEVHRFAIGSHRARRKKEMVKSPLDEIAGIGPGRKRALLLAFGTAKAVSRAAIEDLRKVDGISEQVAKLVYNHFHES
>NZ_CP033334.1|WP_056563166.1|5347046_5347808_-|SDR-family-oxidoreductase
MSKATAALVTGGAKRIGRAIVEDLAGHGFAVAIHANRSRGEADALAAGINQSGGRAAVVSADLTDMDAVSDLVGQAEVALGPISLLVNNASLFVDDSVDDFDWQAWDRHFAIHVKTPALLAQNFARALPKGQEGLIVNIIDQRVWRPTPRYFSYALSKSALWTQTQMLAQALGPKIRVNAIGPGPTLKNMRQDDSDFDAQVAGLILKRGPELPEFGATIRYLWDARSVTGQMIALDGGQHLAWQTPDVTGMAE
>NZ_CP033334.1|WP_056563168.1|5348221_5348878_+|porin-family-protein
MQANLKFARPLAVALGLFALGGTAYAADVVQEEPPAPAPVAELPVASWAGPYAGINLGYGFSGRTKEKDLGFETDTKGFVGSVFGGYQWQQENFVYGGEAELGYNGVKGDDNGIHSKGGFEGSLRARLGYAVTPEILLYGTGGLAGKSLKVDDSDIPASDRATMLGWTAGVGTDIKLTDNVFGRVEYRYTDFGSKSFDGIGKVKATDNRVTFGVGMKF
>NZ_CP033334.1|WP_056563171.1|5348940_5349537_-|glutathione-S-transferase
MPKLLYASTSPYSSKVRMAAAYAGIVIDLVPVKTEDRPAELIGANPLGKIPVLVLDDGRSIHDSRAITQHLNRISKNALFPRNPDKRLEAEVLEALADGICDCALSMVYERRTRPDEMVYQPWLDRQWAKITAALDLLNANPPKLPKKITAGQMALRACLGYLSLRFAGKWEKGRGRLTRWAARFDEKFPELKSAIPG
>NZ_CP033334.1|WP_155772381.1|5349985_5350456_+|hypothetical-protein
MAFGAAAFFTAGFVAAAAAFAAGFAAAFTAGFATAFAAGFAAALAGAAFLAAGFAAALAAGFFDGAAFAAGFATALAGAAFFTAGFATALAAAGFLAGAAFAAGFAAAFAGAAFFTAVAAFAATAFAGAFFAGALDAGALDDCLAMSCPFTLCRWP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP033334_1	1.1\|382048\|34\|NZ_CP033334\|CRISPRCasFinder	382048-382081	34	NZ_CP011521	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-4, complete sequence	33915-33948	5	0.853
NZ_CP033334_1	1.1\|382048\|34\|NZ_CP033334\|CRISPRCasFinder	382048-382081	34	MN585989	Mycobacterium phage Superchunk, complete genome	23548-23581	6	0.824
NZ_CP033334_1	1.1\|382048\|34\|NZ_CP033334\|CRISPRCasFinder	382048-382081	34	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1245275-1245308	8	0.765
NZ_CP033334_1	1.1\|382048\|34\|NZ_CP033334\|CRISPRCasFinder	382048-382081	34	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	72352-72385	8	0.765
NZ_CP033334_1	1.1\|382048\|34\|NZ_CP033334\|CRISPRCasFinder	382048-382081	34	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	284629-284662	9	0.735
NZ_CP033334_1	1.1\|382048\|34\|NZ_CP033334\|CRISPRCasFinder	382048-382081	34	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	267839-267872	10	0.706
NZ_CP033334_1	1.1\|382048\|34\|NZ_CP033334\|CRISPRCasFinder	382048-382081	34	NZ_CP003988	Streptomyces sp. 769 plasmid pSGZL, complete sequence	129069-129102	10	0.706
NZ_CP033334_1	1.1\|382048\|34\|NZ_CP033334\|CRISPRCasFinder	382048-382081	34	KX641264	Mycobacterium phage LindNT, complete genome	56900-56933	11	0.676

1. spacer 1.1|382048|34|NZ_CP033334|CRISPRCasFinder matches to NZ_CP011521 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-4, complete sequence) position: , mismatch: 5, identity: 0.853

ggcgatg-cgccgccggccaagccggcgacaccgg	CRISPR spacer
-gcggtgccgctgccggccaagccggcgacacccc	Protospacer
 ***.** ***.*********************

2. spacer 1.1|382048|34|NZ_CP033334|CRISPRCasFinder matches to MN585989 (Mycobacterium phage Superchunk, complete genome) position: , mismatch: 6, identity: 0.824

ggcgat-gcgccgccggccaagccggcgacaccgg	CRISPR spacer
-gcgccagcgccgccggccaagccggtgaaaccga	Protospacer
 *** . *******************.** ****.

3. spacer 1.1|382048|34|NZ_CP033334|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 8, identity: 0.765

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
gccgatgcgccgccggccaagctggcgttctacg	Protospacer
* ********************.**** . .  *

4. spacer 1.1|382048|34|NZ_CP033334|CRISPRCasFinder matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 8, identity: 0.765

ggcga-tgcgccgccggccaagccggcgacaccgg	CRISPR spacer
-tcgaccgcgccgccggcatagccggcgacaaggc	Protospacer
  *** .***********  ***********  *

5. spacer 1.1|382048|34|NZ_CP033334|CRISPRCasFinder matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
cacgatgcgcggacggccaagccggctgccgcgc	Protospacer
 .******** * ************* .*  **

6. spacer 1.1|382048|34|NZ_CP033334|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 10, identity: 0.706

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
ccggatgcgccgcccgccgagccggcgctgcgtg	Protospacer
   *********** ***.******** ..*  *

7. spacer 1.1|382048|34|NZ_CP033334|CRISPRCasFinder matches to NZ_CP003988 (Streptomyces sp. 769 plasmid pSGZL, complete sequence) position: , mismatch: 10, identity: 0.706

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
ccgcctacaccgccgcccgagccggcgacaccgc	Protospacer
     *.*.****** **.**************

8. spacer 1.1|382048|34|NZ_CP033334|CRISPRCasFinder matches to KX641264 (Mycobacterium phage LindNT, complete genome) position: , mismatch: 11, identity: 0.676

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
ctacctgcgccgacggccaggccggcgacctttg	Protospacer
     ******* ******.********* .. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2919580 : 2958344

Catovirus(12.5%)

integrase,tRNA,transposase

attL 2955085:2955112|attR 2958443:2958470

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056565810.1\|2919580_2921074_+\|tRNA	histidine--tRNA ligase	A0A1V0S921	Catovirus	2.5e-29	27.3
WP_056565258.1\|2921085_2922207_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_056565255.1\|2922203_2922902_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_056565252.1\|2923002_2924775_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.1e-28	29.2
WP_056565250.1\|2924816_2925725_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_056565247.1\|2925804_2926635_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_056565807.1\|2927213_2927900_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_056565243.1\|2928003_2928948_-	nucleoside hydrolase	NA	NA	NA	NA
WP_056565241.1\|2929051_2930065_+	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_056565238.1\|2930155_2931013_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_056565235.1\|2931070_2932012_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_171883354.1\|2932062_2932815_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-26	34.1
WP_056565229.1\|2932935_2933844_-	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_056565226.1\|2934005_2936204_+	catalase/peroxidase HPI	NA	NA	NA	NA
WP_056565223.1\|2936277_2936955_-	MIP family channel protein	NA	NA	NA	NA
WP_056565220.1\|2937257_2938547_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_056565217.1\|2938622_2939075_+	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_013893903.1\|2939173_2939632_+	PaaI family thioesterase	NA	NA	NA	NA
WP_056565213.1\|2939631_2940297_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_056565210.1\|2940352_2941915_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_065005794.1\|2942231_2943485_+\|integrase	tyrosine-type recombinase/integrase	T1S9J3	Salmonella_phage	2.7e-109	49.4
WP_080643972.1\|2943465_2943720_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_065005793.1\|2944211_2944949_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.3e-59	48.6
WP_081295214.1\|2945765_2946053_+	hypothetical protein	NA	NA	NA	NA
WP_065005804.1\|2946220_2946700_+	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_065005791.1\|2947353_2949417_-	recombinase family protein	G1D5I8	Mycobacterium_phage	1.7e-07	22.5
WP_155767380.1\|2949413_2949704_-	hypothetical protein	NA	NA	NA	NA
WP_065005789.1\|2952827_2954027_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_065005788.1\|2954033_2954915_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	7.8e-31	33.5
2955085:2955112	attL	NA	NA	NA	NA
WP_065005787.1\|2955191_2956187_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_065005786.1\|2956176_2957121_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_065005785.1\|2957117_2958344_-\|integrase	tyrosine-type recombinase/integrase	Q7Y4M3	Streptococcus_phage	2.1e-05	26.2
2958443:2958470	attR	NA	NA	NA	NA

DBSCAN-SWA_2

4176638 : 4184824

uncultured_Mediterranean_phage(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056573419.1\|4176638_4177442_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.3e-32	33.1
WP_056572370.1\|4177438_4178206_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.5e-41	46.2
WP_010909892.1\|4178386_4178608_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.1e-08	65.9
WP_065005580.1\|4178638_4179388_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_019858559.1\|4179384_4180260_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.5e-50	46.3
WP_056572367.1\|4180451_4181756_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-100	56.6
WP_056572365.1\|4181755_4182514_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_056572364.1\|4182510_4183164_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.6e-17	37.9
WP_056572362.1\|4183291_4184824_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2K9VGT1	Pontimonas_phage	9.1e-11	37.4

DBSCAN-SWA_3

4957777 : 5009370

Sinorhizobium_phage(26.92%)

head,portal,tRNA,tail,terminase,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056562298.1\|4957777_4959031_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	7.6e-64	37.6
WP_065005067.1\|4959129_4962510_-	hypothetical protein	NA	NA	NA	NA
WP_056565414.1\|4962605_4963073_+	peroxiredoxin	NA	NA	NA	NA
WP_056562303.1\|4963104_4964247_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_056562306.1\|4964243_4965239_-	sterol desaturase family protein	NA	NA	NA	NA
WP_056562309.1\|4965542_4966847_+	M23 family metallopeptidase	A0A1D6X855	Bacillus_phage	3.4e-22	46.7
WP_056562312.1\|4966939_4968178_-	amidohydrolase	NA	NA	NA	NA
WP_056562315.1\|4968164_4969343_-	M24 family metallopeptidase	NA	NA	NA	NA
WP_056562318.1\|4969561_4970728_+	ROK family protein	NA	NA	NA	NA
WP_056562321.1\|4970724_4971489_+	sugar ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	1.7e-10	31.7
WP_056562324.1\|4971529_4972570_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_065005129.1\|4972691_4973687_+	ABC transporter permease	NA	NA	NA	NA
WP_056562325.1\|4973700_4974471_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_171883316.1\|4974536_4975259_-	hypothetical protein	NA	NA	NA	NA
WP_065005066.1\|4975530_4975908_-	hypothetical protein	NA	NA	NA	NA
WP_065005065.1\|4975900_4976194_-	hypothetical protein	NA	NA	NA	NA
WP_065005064.1\|4976287_4976575_+	hypothetical protein	NA	NA	NA	NA
WP_065005063.1\|4976579_4977272_+	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	2.3e-30	39.8
WP_065005062.1\|4977675_4977897_-	DUF768 domain-containing protein	NA	NA	NA	NA
WP_065005061.1\|4978025_4978781_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_065005060.1\|4978922_4979273_-	hypothetical protein	NA	NA	NA	NA
WP_065005059.1\|4979952_4980252_+	DUF1236 domain-containing protein	NA	NA	NA	NA
WP_065005127.1\|4980321_4980522_+	hypothetical protein	NA	NA	NA	NA
WP_081294718.1\|4980515_4980614_-	DUF768 domain-containing protein	NA	NA	NA	NA
WP_056570218.1\|4980638_4980869_-	hypothetical protein	NA	NA	NA	NA
WP_056570217.1\|4980880_4981087_-	hypothetical protein	NA	NA	NA	NA
WP_065005058.1\|4981597_4981810_+	hypothetical protein	NA	NA	NA	NA
WP_056570216.1\|4982601_4982904_+	hypothetical protein	NA	NA	NA	NA
WP_065005057.1\|4982917_4983319_-	DUF1515 domain-containing protein	NA	NA	NA	NA
WP_065005056.1\|4983488_4983782_-	hypothetical protein	NA	NA	NA	NA
WP_065005055.1\|4983778_4984630_-	glycoside hydrolase family 108 protein	J7FAQ2	Agrobacterium_phage	1.9e-58	46.7
WP_155772402.1\|4984683_4984887_+	hypothetical protein	NA	NA	NA	NA
WP_065005053.1\|4984883_4985312_-	hypothetical protein	NA	NA	NA	NA
WP_065005052.1\|4985311_4986763_-	hypothetical protein	A0A218M356	Acidovorax_phage	5.4e-29	38.8
WP_065005051.1\|4986772_4988383_-	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	2.6e-16	24.3
WP_065005050.1\|4988382_4991097_-	hypothetical protein	A0A2D2W226	Sinorhizobium_phage	6.6e-04	36.8
WP_065005049.1\|4991100_4991517_-	hypothetical protein	NA	NA	NA	NA
WP_065005048.1\|4991523_4992090_-	DUF2163 domain-containing protein	A0A2D2W208	Sinorhizobium_phage	2.0e-51	54.8
WP_065005047.1\|4992086_4992698_-	hypothetical protein	A0A2D2W2B3	Sinorhizobium_phage	1.4e-47	49.5
WP_065005046.1\|4992694_4994707_-\|tail	phage tail length tape measure family protein	A0A291AUU3	Sinorhizobium_phage	3.2e-32	50.9
WP_155772401.1\|4994719_4995004_+	hypothetical protein	NA	NA	NA	NA
WP_065005045.1\|4995156_4995564_-	gene transfer agent family protein	NA	NA	NA	NA
WP_065005044.1\|4995563_4995998_-	hypothetical protein	A0A2D2W2I6	Sinorhizobium_phage	1.4e-09	35.3
WP_065005043.1\|4996034_4996424_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_081294716.1\|4996420_4996846_-	HK97 gp10 family phage protein	B4UTQ0	Rhizobium_phage	8.7e-12	33.6
WP_065005042.1\|4996845_4997190_-\|head	phage head closure protein	A0A141GEW5	Brucella_phage	3.2e-25	55.5
WP_065005041.1\|4997167_4997377_-	hypothetical protein	NA	NA	NA	NA
WP_065005040.1\|4997379_4997790_-	hypothetical protein	B4UTP8	Rhizobium_phage	1.6e-23	47.1
WP_065005039.1\|4997816_4998386_-\|head,tail	phage head-tail connector protein	C7BGH1	Burkholderia_phage	5.1e-07	32.9
WP_065005038.1\|4998390_4998765_-	hypothetical protein	A0A1B1IUW2	uncultured_Mediterranean_phage	2.7e-09	40.9
WP_155772400.1\|4998814_4999036_-	hypothetical protein	NA	NA	NA	NA
WP_081294715.1\|4999111_5000422_-\|capsid	phage major capsid protein	A0A0U2C0U7	Paracoccus_phage	3.9e-127	61.5
WP_065005036.1\|5000450_5001119_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.7e-60	53.2
WP_065005035.1\|5001115_5002339_-\|portal	phage portal protein	A0A0U2BXP2	Paracoccus_phage	4.9e-132	61.5
WP_081294714.1\|5002335_5003970_-\|terminase	terminase large subunit	I3ULZ6	Rhodobacter_phage	2.1e-183	61.2
WP_065005033.1\|5004031_5004520_-	hypothetical protein	I3ULZ5	Rhodobacter_phage	5.1e-40	55.8
WP_065005032.1\|5004655_5004859_+	hypothetical protein	NA	NA	NA	NA
WP_065005031.1\|5004859_5005153_-	hypothetical protein	NA	NA	NA	NA
WP_171883317.1\|5005278_5005935_-	hypothetical protein	NA	NA	NA	NA
WP_065005029.1\|5005906_5007109_-	hypothetical protein	A0A068CE61	Rhizobium_phage	1.0e-25	27.5
WP_081294791.1\|5007105_5007870_-	HNH endonuclease	X2KPF7	Streptococcus_phage	2.9e-18	34.2
WP_065005028.1\|5007929_5008556_-	HNH endonuclease	NA	NA	NA	NA
WP_065005027.1\|5008552_5008804_-	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	1.2e-08	57.1
WP_065005026.1\|5008800_5009370_-	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	5.9e-24	52.2

DBSCAN-SWA_4

6382734 : 6445805

uncultured_virus(18.18%)

integrase,transposase,protease

attL 6398234:6398252|attR 6433779:6433797

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019856465.1\|6382734_6383292_-\|transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	6.5e-07	29.1
WP_155249076.1\|6383291_6383567_-	hypothetical protein	NA	NA	NA	NA
WP_019856462.1\|6384211_6384529_-	ferredoxin III, nif-specific	NA	NA	NA	NA
WP_019856461.1\|6384782_6385442_-	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA
WP_027046519.1\|6386127_6387597_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_065005192.1\|6389020_6390235_-	hypothetical protein	NA	NA	NA	NA
WP_065005196.1\|6390448_6392470_-	carbamoyltransferase	E3SL39	Synechococcus_phage	2.8e-52	27.8
WP_064987328.1\|6392735_6393524_-	ABC transporter permease	NA	NA	NA	NA
WP_080643697.1\|6393527_6394544_-	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	3.3e-25	27.4
WP_064987326.1\|6394599_6395874_-	chitooligosaccharide synthase NodC	NA	NA	NA	NA
WP_027046516.1\|6395929_6396523_-	NodA family N-acyltransferase	NA	NA	NA	NA
WP_064987324.1\|6397311_6397926_-	methyltransferase domain-containing protein	NA	NA	NA	NA
6398234:6398252	attL	NA	NA	NA	NA
WP_065005558.1\|6398650_6400165_+\|integrase	integrase	NA	NA	NA	NA
WP_171883331.1\|6400653_6401835_-	5-demethoxyubiquinol-8 5-hydroxylase UbiM	NA	NA	NA	NA
WP_155249075.1\|6403199_6403364_+	hypothetical protein	NA	NA	NA	NA
WP_155249074.1\|6403398_6403557_+	hypothetical protein	NA	NA	NA	NA
WP_019856452.1\|6403674_6404760_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_064987321.1\|6404790_6406947_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	3.5e-40	27.9
WP_065005180.1\|6407876_6409607_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	8.7e-10	30.5
WP_065005179.1\|6409682_6410102_-	DUF2958 domain-containing protein	A0A1W6DX76	Sphingobium_phage	7.0e-22	50.4
WP_020628761.1\|6410742_6411885_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_155249250.1\|6414976_6415480_+	hypothetical protein	NA	NA	NA	NA
WP_019863568.1\|6415469_6415919_+	hypothetical protein	NA	NA	NA	NA
WP_019863567.1\|6415899_6416808_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	3.0e-46	38.5
WP_065005177.1\|6416804_6417524_-	DUF1738 domain-containing protein	A0A1B1IRD0	uncultured_Mediterranean_phage	7.3e-27	38.7
WP_019863563.1\|6420084_6420381_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	5.4e-21	55.4
WP_065005173.1\|6420445_6422113_+	chaperonin GroEL	A0A240F779	uncultured_virus	4.7e-170	60.6
WP_064987315.1\|6422452_6422932_-	ProQ/FinO family protein	NA	NA	NA	NA
WP_065005171.1\|6423972_6426159_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_064987312.1\|6426628_6426949_-	hypothetical protein	NA	NA	NA	NA
WP_081288669.1\|6426914_6427235_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064987311.1\|6428059_6428290_-	RNA-binding protein	NA	NA	NA	NA
WP_064987310.1\|6428289_6429369_-	macro domain-containing protein	A0A0B4N0V6	Escherichia_phage	1.1e-21	40.6
WP_064987309.1\|6429368_6430001_-	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_064987308.1\|6432716_6433685_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_064987307.1\|6434324_6435290_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
6433779:6433797	attR	NA	NA	NA	NA
WP_081288666.1\|6436248_6436653_-	hypothetical protein	NA	NA	NA	NA
WP_019863500.1\|6436649_6437837_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_065005170.1\|6437811_6438489_-	multiubiquitin domain-containing protein	NA	NA	NA	NA
WP_032921561.1\|6438616_6438823_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_064987305.1\|6438819_6439467_+	hypothetical protein	NA	NA	NA	NA
WP_032920912.1\|6439482_6440010_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019863494.1\|6440006_6440963_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_064987304.1\|6441832_6442042_+	hypothetical protein	NA	NA	NA	NA
WP_064987303.1\|6442333_6442789_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_081294825.1\|6443218_6444310_-	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_065005168.1\|6444381_6445257_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_171883332.1\|6445385_6445805_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

6476003 : 6600222

Stx2-converting_phage(30.77%)

holin,tRNA,transposase,integrase

attL 6475329:6475388|attR 6560249:6560336

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6475329:6475388	attL	NA	NA	NA	NA
WP_065005554.1\|6476003_6477587_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.5e-96	41.9
6475329:6475388	attL	NA	NA	NA	NA
WP_023782575.1\|6477659_6478010_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_081295079.1\|6478006_6478444_-\|transposase	transposase	NA	NA	NA	NA
WP_171883370.1\|6478325_6479561_-	proline dehydrogenase	A0A0E3EV04	Synechococcus_phage	4.3e-27	31.4
WP_065005198.1\|6482283_6483021_-	LuxR family transcriptional regulator	A0A1I9KF49	Aeromonas_phage	3.8e-15	28.5
WP_065005200.1\|6483569_6484625_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_065005201.1\|6484624_6485734_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA
WP_065005202.1\|6485742_6487296_-	trimethylamine methyltransferase family protein	NA	NA	NA	NA
WP_065005203.1\|6487558_6489205_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_155767366.1\|6489257_6489644_+	hypothetical protein	NA	NA	NA	NA
WP_065005221.1\|6489870_6490887_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_065005205.1\|6490892_6491891_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_065005222.1\|6491925_6492162_+	biotin attachment protein	NA	NA	NA	NA
WP_065005206.1\|6492161_6492851_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_065005207.1\|6492955_6493951_+	lipoyl synthase	NA	NA	NA	NA
WP_081294831.1\|6494524_6495496_+	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_065005223.1\|6495537_6496284_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_065005209.1\|6496370_6497141_-	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	4.3e-17	30.3
WP_065005210.1\|6497251_6498280_-\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-28	34.6
WP_065005224.1\|6498291_6499251_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_065005225.1\|6499694_6500459_-	glucose 1-dehydrogenase	A0A2P0VP75	Tetraselmis_virus	1.7e-05	24.3
WP_065005211.1\|6500965_6501877_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_065005212.1\|6501885_6503208_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_065005213.1\|6503221_6504748_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_065005214.1\|6504725_6505670_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_081294832.1\|6512874_6512994_-	HNH endonuclease	NA	NA	NA	NA
WP_065005216.1\|6513296_6514130_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.9e-43	41.3
WP_065005217.1\|6514490_6515492_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_065005218.1\|6515497_6516514_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_155767367.1\|6516827_6516923_-	hypothetical protein	NA	NA	NA	NA
WP_065141597.1\|6517234_6517618_-	hypothetical protein	NA	NA	NA	NA
WP_065005219.1\|6517842_6518754_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_065005220.1\|6519304_6520324_-	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_171883334.1\|6520316_6520568_-	2-oxoglutarate and iron-dependent oxygenase domain-containing protein	NA	NA	NA	NA
WP_065141624.1\|6520564_6521272_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_081294835.1\|6521996_6522554_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_065005239.1\|6522550_6523279_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_065141615.1\|6523355_6523790_+	hypothetical protein	NA	NA	NA	NA
WP_155767372.1\|6523962_6524277_+	transcriptional repressor	NA	NA	NA	NA
WP_065005558.1\|6527041_6528556_-\|integrase	integrase	NA	NA	NA	NA
WP_065141624.1\|6529070_6529778_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_171883335.1\|6529774_6530707_+	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_065005556.1\|6531006_6531291_-	hypothetical protein	NA	NA	NA	NA
WP_065005548.1\|6533032_6534319_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_065005550.1\|6534954_6535305_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_065005547.1\|6535586_6536585_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.1e-56	41.5
WP_081295079.1\|6536638_6537076_+\|transposase	transposase	NA	NA	NA	NA
WP_023782575.1\|6537072_6537423_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_065005554.1\|6537495_6539079_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.5e-96	41.9
WP_065005553.1\|6539075_6539675_+	UPF0149 family protein	NA	NA	NA	NA
WP_065005553.1\|6540580_6541180_-	UPF0149 family protein	NA	NA	NA	NA
WP_065005554.1\|6541176_6542760_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.5e-96	41.9
WP_023782575.1\|6542832_6543183_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
6539695:6542867	attR	NA	NA	NA	NA
WP_081295079.1\|6543179_6543617_-\|transposase	transposase	NA	NA	NA	NA
6539695:6542867	attR	NA	NA	NA	NA
WP_155772427.1\|6543692_6543884_+	hypothetical protein	NA	NA	NA	NA
WP_065005238.1\|6543946_6545323_-	CapA family protein	NA	NA	NA	NA
WP_065005237.1\|6545430_6546864_-	amidohydrolase	NA	NA	NA	NA
WP_065005235.1\|6548127_6549135_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-18	28.3
WP_065005234.1\|6549136_6550018_-	ABC transporter permease	NA	NA	NA	NA
WP_065005233.1\|6550019_6550961_-	ABC transporter permease	NA	NA	NA	NA
WP_065005232.1\|6550960_6552565_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_081294914.1\|6555062_6556283_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_065005389.1\|6556350_6557520_-	amidohydrolase	NA	NA	NA	NA
WP_065005558.1\|6558733_6560248_-\|integrase	integrase	NA	NA	NA	NA
WP_065005767.1\|6562911_6564147_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_065005758.1\|6564966_6566223_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_065005757.1\|6567558_6568014_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_155767361.1\|6568422_6569289_+	aminotransferase class IV	NA	NA	NA	NA
WP_065005754.1\|6573272_6575981_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_065005753.1\|6575977_6577036_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_065005752.1\|6577046_6578093_-	hypothetical protein	NA	NA	NA	NA
WP_065005751.1\|6579031_6579457_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_065005750.1\|6579948_6580269_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_065005766.1\|6580295_6580757_+	iron-sulfur cluster assembly scaffold protein	A0A218MKD1	uncultured_virus	4.7e-11	45.5
WP_065005749.1\|6580753_6580990_+	hypothetical protein	NA	NA	NA	NA
WP_065005748.1\|6580993_6581626_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA
WP_065005747.1\|6581622_6581976_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_065005746.1\|6581980_6582718_+	7-cyano-7-deazaguanine synthase QueC	A0A2I2L6M4	Escherichia_phage	5.1e-44	43.0
WP_065141586.1\|6582710_6582959_-	hypothetical protein	NA	NA	NA	NA
WP_065005744.1\|6583084_6583375_+	hypothetical protein	NA	NA	NA	NA
WP_065005743.1\|6583440_6583692_+	hypothetical protein	NA	NA	NA	NA
WP_065005742.1\|6583748_6584786_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_065005741.1\|6586203_6586392_+	hypothetical protein	NA	NA	NA	NA
WP_065005765.1\|6587094_6588108_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_155767360.1\|6588511_6589468_-	S8 family serine peptidase	NA	NA	NA	NA
WP_019863348.1\|6589530_6590094_-	hypothetical protein	NA	NA	NA	NA
WP_027047788.1\|6591682_6591874_-	hypothetical protein	NA	NA	NA	NA
WP_080643871.1\|6593074_6593959_+	hypothetical protein	NA	NA	NA	NA
WP_065141585.1\|6594664_6595024_+	hypothetical protein	NA	NA	NA	NA
WP_155767358.1\|6595481_6595604_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064987124.1\|6595723_6596047_-	exopolysaccharide repressor protein	NA	NA	NA	NA
WP_065005737.1\|6596085_6596403_-	ferredoxin III, nif-specific	NA	NA	NA	NA
WP_019863342.1\|6596399_6596603_-	hypothetical protein	NA	NA	NA	NA
WP_065005735.1\|6598221_6600222_-\|tRNA	class I tRNA ligase family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP033334

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection