CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053357	Listeria monocytogenes strain 2017-TE-6913-1 chromosome, complete genome	1 crisprs	DEDDh,cas3,DinG,WYL,csa3,casR	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053357_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053357_1

2290721-2290830

Orphan

Consensus_repeat	Method
AGCGATGATTTAATCCTTACCAGAACTTTCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053357_1

>merge|NZ_CP053357|1|2290721-2290830|CRISPRCasFinder
AGCGATGATTTAATCCTTACCAGAACTTTCAAAACGTACTTTGTTTTGATCTACTTCTTCAATATAAATCCGAGCGCAGCGATGATTTAATCCTTACCAGAACTTTCAAA

>NZ_CP053357|1|1|2290721-2290830|CRISPRCasFinder
AGCGATGATTTAATCCTTACCAGAACTTTCAAA	ACGTACTTTGTTTTGATCTACTTCTTCAATATAAATCCGAGCGC
AGCGATGATTTAATCCTTACCAGAACTTTCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053357.1\|WP_003730755.1\|2291938_2293303_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP053357.1\|WP_003725002.1\|2287555_2287801_-\|YaaL-family-protein	unknown	unknown	gnl\|CDD\|378478
NZ_CP053357.1\|WP_009917600.1\|2279087_2279711_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP053357.1\|WP_003722073.1\|2296897_2297836_-\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP053357.1\|WP_003725005.1\|2293930_2294572_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053357.1\|WP_003743164.1\|2295268_2296783_-\|gluconokinase	unknown	unknown	gnl\|CDD\|212659
NZ_CP053357.1\|WP_003722067.1\|2291582_2291804_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053357.1\|WP_003727663.1\|2278185_2279025_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP053357.1\|WP_003727657.1\|2291397_2291580_-\|DUF3188-domain-containing-protein	unknown	unknown	gnl\|CDD\|371501
NZ_CP053357.1\|WP_003727658.1\|2288867_2290607_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_CP053357.1\|WP_003725010.1\|2298968_2300708_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP053357.1\|WP_046671106.1\|2286420_2286603_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053357.1\|WP_003722065.1\|2290915_2291380_-\|DUF3284-domain-containing-protein	unknown	unknown	gnl\|CDD\|378692
NZ_CP053357.1\|WP_003722069.1\|2293743_2293899_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053357.1\|WP_003722062.1\|2287815_2288412_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP053357.1\|WP_003730756.1\|2286667_2287510_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223729
NZ_CP053357.1\|WP_010959080.1\|2297878_2298826_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP053357.1\|WP_003724998.1\|2277215_2278067_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP053357.1\|WP_171424465.1\|2279845_2285893_-\|bacterial-Ig-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|369401
NZ_CP053357.1\|WP_003722063.1\|2288520_2288838_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669

Protein	Function_ID	Function_description	E-value
NZ_CP053357.1\|WP_003730755.1\|2291938_2293303_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	2.0824e-162
NZ_CP053357.1\|WP_003725002.1\|2287555_2287801_-\|YaaL-family-protein	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	8.04581e-15
NZ_CP053357.1\|WP_009917600.1\|2279087_2279711_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	0.000242705
NZ_CP053357.1\|WP_003722073.1\|2296897_2297836_-\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	6.39605e-99
NZ_CP053357.1\|WP_003743164.1\|2295268_2296783_-\|gluconokinase	gnl\|CDD\|212659	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain.	0
NZ_CP053357.1\|WP_003727663.1\|2278185_2279025_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.17277e-86
NZ_CP053357.1\|WP_003722065.1\|2290915_2291380_-\|DUF3284-domain-containing-protein	gnl\|CDD\|378692	pfam11687, DUF3284, Domain of unknown function (DUF3284). This family of proteins with unknown function appears to be restricted to Firmicutes.	5.35099e-31
NZ_CP053357.1\|WP_003727658.1\|2288867_2290607_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP053357.1\|WP_003725010.1\|2298968_2300708_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP053357.1\|WP_003727657.1\|2291397_2291580_-\|DUF3188-domain-containing-protein	gnl\|CDD\|371501	pfam11384, DUF3188, Protein of unknown function (DUF3188). This bacterial family of proteins has no known function.	1.21027e-11
NZ_CP053357.1\|WP_003722062.1\|2287815_2288412_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.77001e-132
NZ_CP053357.1\|WP_003730756.1\|2286667_2287510_+\|aldo/keto-reductase	gnl\|CDD\|223729	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only].	1.5127e-129
NZ_CP053357.1\|WP_010959080.1\|2297878_2298826_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.22568e-05
NZ_CP053357.1\|WP_003724998.1\|2277215_2278067_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	6.50053e-63
NZ_CP053357.1\|WP_171424465.1\|2279845_2285893_-\|bacterial-Ig-like-domain-containing-protein	gnl\|CDD\|369401	pfam07523, Big_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	6.90616e-19
NZ_CP053357.1\|WP_003722063.1\|2288520_2288838_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.53269e-41

>NZ_CP053357.1|WP_003727658.1|2288867_2290607_-|DNA-polymerase-III-subunit-gamma/tau
MAYQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSVAGGGNVPADAASGSDLSDLKRQMEQMHQEIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQLIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETITSSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDGDAEDGANPEAKKPAEDPFVAEAAKLVGEDLLEIKD
>NZ_CP053357.1|WP_003722063.1|2288520_2288838_-|YbaB/EbfC-family-nucleoid-associated-protein
MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTVKATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNIPGM
>NZ_CP053357.1|WP_003722062.1|2287815_2288412_-|recombination-protein-RecR
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV
>NZ_CP053357.1|WP_003725002.1|2287555_2287801_-|YaaL-family-protein
MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQEKWHKQKVLMRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK
>NZ_CP053357.1|WP_003730756.1|2286667_2287510_+|aldo/keto-reductase
MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDKIDLYLVHWPKQDTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPVVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKYGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI
>NZ_CP053357.1|WP_046671106.1|2286420_2286603_-|hypothetical-protein
MKNRNQLIFINAEEIWGKWLQKSTIHFVLKKHGDIDVGRNKKAKMTNKQEAGRIYLLKWI
>NZ_CP053357.1|WP_171424465.1|2279845_2285893_-|bacterial-Ig-like-domain-containing-protein
MKRTKSIQRYLVSLMAIFLVLGQLNLATINAFAKENGNEELSYDVKSKLADDKKSSDLSLKVTPVNEQVKVLTIETPDGKKTEGPEASYKAEKNGTADFLVTYKNTSTENAETKTYTASYDVSGIVSEDTSKEADKETNDKETSDTATPVNTTKAETKTLLQAGESDVTLSIPDYDQTAWANGDIKEVTATVDFADSTSTGKKVNFTLPDGMRFVTVPVPSDYQPTSNVDTSILSYLGASDPLSVAITSTTVPDLETTYNKATFGKVSYELDKGTEKASFTFSVRVDAAKYYGATDLKTPIKAEAYVNGSSTPFASAEQTIHAEGDKVVGYAKQDHVKTMFRNWYDSSWLKEVTASEGVYESYNYTKPYSVVNALNQQDSRGARVFMAKHVTTTLYYPEGMEFVGVADSNGNLSPSNANKTITNYPDENKVVIEFNQLNYNGVNDAVYSVKYKVPEGTPAGTYTAAKAPHAVITTYDGEVFETDALTNDPSDLTTVADKDICVVVDPGENKMNLVANDGNINPDNETWAGSIRIDNKHIAGVKTDQMYQIEFDPNWEAYMVNLPFDSTMPDNKITGVMYKTNLNSEYREYTGALTKNNNQTYRLDAQAAGLKDGEYFTVVRANVGAFSPGYVSSEGSAIYRWNSTASYGKAKPGVTSVKFTGSVWATGHQDTTKSTGVSTYSVPEEVTSAANGTATFYNEDGTAVQTAKAGDTISTKATLSLDDYPFGTTTVLNDPSIYLQELDGTTIKPSTIKLTDQDGNNVDFTVTQETANNGNKVYVLKTTDATVGAYVGYPAKAKNLKLSYDTVFDLTLDSTISMDAKDIIAWGGKDVASAVSYNSFQDEGIDINQNGVTSEYLLSVQASPLNISKQDTVVVETFLSLAGEGAKDAYVDGEDSTVSYFTPGTDADYTVQVTNTASSSANTFELYIPIPKTGQNFGPQFQKEAFNWDMKLSGALPLSTDQQSQFEVGYATAATANDYESAGLYTDSVSDFSKVNMVRIKVKTQINAGETQTFKIPLNVNETFDSATTDNKIGERDIYNPYYRVVTNTFSGSLSGTKVGAELVIGEVSGTLFDDKDANGLYEKSKGDKPLANETVELYKWNDATSSYEPATKDGNNVTAKTDANGAYKFDYTSDVGYGKYAVKFPDKAGYQYTQKNAGNDVSIDSDVSYSGADKGWVKEVDSTQPDSQYINAGYYAFTPEQDLKVNLNEKLVQAGKNLEITLPKVASTSGQAAEDTIEPEFFNNIQASSDGYKWTVADAGVATVKTLSDGSAAVVGVSAGDKTIAATDLTIAIQDIFGTTQSSTAPVYVTAPNGTVTQQDGYTLGATDFTMTYQDSVALTDAGSMNLGKTAAFEEVKSGVNSSAEDRISSVKVDQAQLDAIKNGPNTGGTYPLTYSVTKDGKTAEVTIQVTVTADLTTIDAHDSTIYVGDKWTAEDNFDNALNKTGDTVAFVDVTVSGSVDTEVAGTYPVTYSYNGVSKTINVTVKDKQSAVNAHDSVIYTGDTWKAEDNFDSALDKDGNSVDFADITVSGTVDTTKAGENEITYTHDGVSTTITVTVKENKEGISAHDSSIYVGDAWKAEDNFDSAFDKDGNVVAFNDVTVTEKPTVDNGKVGAYEVTYTYGKASKTITVTVKDIQTAVNAHDSTIYINDSWNAEDNFDSALDKDGNRLSFADVEVSGTVDINKAGVYPITYTYDGTSTTINVTVKDSLTTVIAHDSVIYAGDKWNAEDNFDSATDKDGNKIDFKNVTVTDASKVDSNKPGIYQVTYSYDGVSTVINVTVEARQTNVDAHDSTIYAGDKWSAKDNFDSATNKKGDNVVFADVTETGQVDPNTPGVYEISYSYDGVKTVVHVTVLENKAQIKVKDSVIQKGDKWNAEDNFIKATNRDGVTIPFSKVTTSGTVNTNKVGTYKVIYTYDPNEGTADAGKELLFVTATIRVEAASADFTPNDSNNTSEKTVININDHTQKTHKATYLEAKPLPKTGDQTNPWTVWGGIALLGLGMLLWATRRKRHQ
>NZ_CP053357.1|WP_009917600.1|2279087_2279711_-|Crp/Fnr-family-transcriptional-regulator
MEFHKFIKEDMLIYSWITNNFHLNKKELKRRHQLILESTEILVIETGLVLQERMATRYNGCLIVGEQQIIYTTQGSLFIHGLENTTYSIVPVEKVFAKLEEQGLLSNFLLQLAEGLEEDLEWEVKLNSANSKERVDMVLKMLIKKYQLNYQTNPRFPRWLKIHVLAKLAKCSISTTSMIMNEQNKNRVLNKKTTPWLLLEKYQALFN
>NZ_CP053357.1|WP_003727663.1|2278185_2279025_+|Cof-type-HAD-IIB-family-hydrolase
MTTQAIILDIDGTLLNDDKKISPETKKALITAQQNGVKLILASGRPTTGMHVYAEQLEMEKHHGLLVSYNGAKVVDCATSEELFNQALTVEEGKAVLEHMKQFEVKVMIDKEDYMYTNDVYDCYVPYRGEVINIVQYESRGGNFKLCEKDDLAAFLDYRLNKILTAGDPAYMQENYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMGIHAENVIAFGDGHNDITMVEYAGTGIAMQNAVPELKAAASSVTLSNNEDGIAHVLNSLILS
>NZ_CP053357.1|WP_003724998.1|2277215_2278067_+|MurR/RpiR-family-transcriptional-regulator
MNILIKIRELTNLTNSEKELANYILANPKKTLQCKPKELATAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETNEEKDLNYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEELVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
>NZ_CP053357.1|WP_003722065.1|2290915_2291380_-|DUF3284-domain-containing-protein
MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKYQRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIETEKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ
>NZ_CP053357.1|WP_003727657.1|2291397_2291580_-|DUF3188-domain-containing-protein
MKIVNALFLISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIGCVFIVLKIRKDKKEKN
>NZ_CP053357.1|WP_003722067.1|2291582_2291804_-|hypothetical-protein
MIILNCPMKRDYITELLETYDKDGVTFKKIDEKGMKLTFETNIEDEEKAAKIAKETIKATEIGSVLYFQVSVG
>NZ_CP053357.1|WP_003730755.1|2291938_2293303_-|PTS-sugar-transporter-subunit-IIC
MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSIAVLLNAFFRDFPTDWGWTGFVEAMQPLIGINGYVYNGTLAIVSIIFAFSLGYNLSKAYEVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDVNTLPKEFAGIYGFFSLSQVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVVGIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVLAPVLESLWGTAQLQNISAAQEGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSKRADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGIVGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEEEMKA
>NZ_CP053357.1|WP_003722069.1|2293743_2293899_+|hypothetical-protein
MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPKNASEQKKQDVEKKTDDN
>NZ_CP053357.1|WP_003725005.1|2293930_2294572_-|hypothetical-protein
MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEVAYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPSTNKYYAGLIDYSVADNAYVTQKDVYITNNESYATYDFFDKNGKKIYTYNPEETSNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVNVRIDEDKEMVIFSIK
>NZ_CP053357.1|WP_003743164.1|2295268_2296783_-|gluconokinase
MTSKPYIMGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETGKAEESPTEIFEAVLSSIQAVMKNVNKEELAGISFSSAMHSLIMVGSNGELLTECITWADGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIKSYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDFLPKVVPETYQLTGVKKEYAELMGIPENLPFIVGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTNQFQIDSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVPPGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEAVSAPDDIIYVTGGISAHDAWCKLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKDLNLKHTLPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS
>NZ_CP053357.1|WP_003722073.1|2296897_2297836_-|GW-domain-containing-glycosaminoglycan-binding-protein
MKKLLSGLIVVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVNQSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGWIDSRAFTNIGKPTIADTVPALWNSKKAIITTKPKSTTATTYFFQKNSAGNWYEVRHFTSHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDKAYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGCVAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN
>NZ_CP053357.1|WP_010959080.1|2297878_2298826_-|LPXTG-cell-wall-anchor-domain-containing-protein
MKKFHGLVLTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTDTTENIITEEKPEPAVPTKDTTVTTSQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTATLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDSEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATAKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK
>NZ_CP053357.1|WP_003725010.1|2298968_2300708_-|thiol-reductant-ABC-exporter-subunit-CydC
MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLISKSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEPQALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFAALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKTFISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTMIAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPTLPTFEEETKEIERINTENVVLKAENLTFAYDEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLPTAGKVTMNGVEVENLRPQIPEITSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAKKVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDPITERDLLATIFETLADKSLIWVTHHLVGAEKMDRVLFLEEGKTLMEGPHAELMAEEPRYKRLYQLDRPIEL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

769966 : 826794

Bacillus_virus(16.67%)

protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003734523.1\|769966_771106_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|771185_771581_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|771731_771947_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003727523.1\|772070_772604_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003731300.1\|772619_773285_+	hypothetical protein	NA	NA	NA	NA
WP_003727521.1\|773546_774485_+	hypothetical protein	NA	NA	NA	NA
WP_171424284.1\|774599_775883_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|776067_777327_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003726393.1\|777445_778012_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003726394.1\|778046_778616_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003727520.1\|778717_779260_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003726396.1\|779269_780133_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003727519.1\|780129_780915_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	6.7e-26	37.6
WP_003727518.1\|781048_781909_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003727517.1\|782181_784260_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	5.4e-107	37.5
WP_003726401.1\|784322_785627_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003731303.1\|785909_786812_+	tyrosine recombinase XerC	A0A142K7N4	Mycobacterium_phage	1.8e-14	29.5
WP_003724001.1\|786832_787372_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003727514.1\|787385_788795_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	7.5e-44	27.8
WP_003726695.1\|788815_789595_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003727513.1\|789697_790117_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|790139_790451_+	hypothetical protein	NA	NA	NA	NA
WP_003726697.1\|790453_791326_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003726698.1\|791367_791964_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003727511.1\|792121_792529_+	CoA-binding protein	NA	NA	NA	NA
WP_003727510.1\|792709_794677_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.1e-123	42.5
WP_003727509.1\|794673_797133_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.8
WP_003726814.1\|797215_797683_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_171424286.1\|798310_800107_+	class 1 internalin InlK	NA	NA	NA	NA
WP_003727507.1\|800139_802026_-	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	3.8e-43	32.2
WP_003726657.1\|802238_802937_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	6.4e-12	31.9
WP_171424288.1\|803169_804846_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_003726658.1\|804972_805890_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|806011_806245_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_077952488.1\|806355_807579_+	GTPase HflX	NA	NA	NA	NA
WP_003727505.1\|807571_808798_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|808999_809368_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|809438_810773_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_046670614.1\|810916_812212_+	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	1.7e-146	62.3
WP_021496024.1\|812245_812770_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723438.1\|812800_813415_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003727502.1\|813570_813900_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003727501.1\|813994_814222_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_009928628.1\|814368_816363_+	transketolase	NA	NA	NA	NA
WP_003726667.1\|816583_816823_+	YneF family protein	NA	NA	NA	NA
WP_003726668.1\|816871_817603_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	2.3e-81	58.0
WP_003726669.1\|817624_818131_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	1.4e-56	66.7
WP_003727499.1\|818140_819445_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	1.2e-133	52.1
WP_012681273.1\|819434_820640_-	helicase SNF2	L0P6E9	Lactobacillus_phage	7.0e-91	46.6
WP_003727498.1\|820617_820992_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|821284_822013_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|822012_822570_+	ribosome recycling factor	NA	NA	NA	NA
WP_003727497.1\|822800_823559_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003727496.1\|823572_824361_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003726414.1\|824375_825518_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003726415.1\|825531_826794_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_2

1319741 : 1328027

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726209.1\|1319741_1320308_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.3e-26	36.4
WP_003726210.1\|1320304_1321354_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_003722245.1\|1321372_1322800_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003731570.1\|1322784_1325004_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-159	40.8
WP_003726212.1\|1324996_1325680_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1325683_1325929_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003726214.1\|1325940_1326654_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.0e-40	38.3
WP_003726215.1\|1326734_1328027_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_3

2013497 : 2021342

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725407.1\|2013497_2014469_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003725408.1\|2014476_2015445_-	YvcK family protein	A1IMD5	Streptococcus_phage	3.9e-68	43.3
WP_003722606.1\|2015446_2016322_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003725409.1\|2016429_2018160_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	9.5e-174	53.1
WP_003741152.1\|2018201_2019263_-	galactose mutarotase	NA	NA	NA	NA
WP_003725411.1\|2019279_2020263_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.0e-52	38.1
WP_003722610.1\|2020382_2021342_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_4

2106375 : 2187579

104

Listeria_phage(86.89%)

protease,plate,holin,tail,terminase,integrase,tRNA

attL 2170838:2170853|attR 2187743:2187758

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728400.1\|2106375_2108046_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003723610.1\|2108042_2108492_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003726106.1\|2108569_2109223_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_071661788.1\|2109257_2109482_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_003726108.1\|2109516_2110839_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.7e-29	32.8
WP_003726109.1\|2110853_2111690_-	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA
WP_003723615.1\|2112006_2112207_-	hypothetical protein	NA	NA	NA	NA
WP_003723616.1\|2112229_2112553_-	YxeA family protein	NA	NA	NA	NA
WP_171424429.1\|2112706_2114368_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003726112.1\|2114502_2115117_-	SdpI family protein	NA	NA	NA	NA
WP_003726113.1\|2115140_2115773_-	nicotinamidase	NA	NA	NA	NA
WP_003726114.1\|2115773_2116298_-	dihydrofolate reductase	NA	NA	NA	NA
WP_003731606.1\|2116300_2117299_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_003731607.1\|2117395_2117668_-	hypothetical protein	NA	NA	NA	NA
WP_003726117.1\|2117716_2118628_-	cation transporter	NA	NA	NA	NA
WP_003731608.1\|2119005_2119833_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003731609.1\|2119947_2120823_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_048667140.1\|2120833_2121127_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_074467445.1\|2121042_2121282_-	hypothetical protein	NA	NA	NA	NA
WP_003728390.1\|2121350_2122019_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.5e-38	41.6
WP_003726476.1\|2122018_2123107_-	ABC transporter permease	NA	NA	NA	NA
WP_003731610.1\|2123185_2124565_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.5e-57	44.3
WP_021496609.1\|2124561_2125239_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-58	48.6
WP_061106797.1\|2125285_2126071_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_003726480.1\|2126132_2126609_-	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_171424431.1\|2126608_2129596_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_003726482.1\|2130093_2130936_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_003728386.1\|2130985_2132467_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_003728385.1\|2132567_2133455_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_021496607.1\|2139245_2140274_-	P-loop NTPase	NA	NA	NA	NA
WP_021496606.1\|2140542_2142069_+	GW domain-containing glycosaminoglycan-binding protein	A0A0K2CP65	Brevibacillus_phage	6.9e-27	48.7
WP_009929083.1\|2142109_2142961_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.0e-47	37.6
WP_003726061.1\|2142982_2143405_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_171424540.1\|2143526_2143865_-	hypothetical protein	NA	NA	NA	NA
WP_021496605.1\|2143973_2144843_+	DUF4969 domain-containing protein	NA	NA	NA	NA
WP_012582421.1\|2145439_2145874_-	hypothetical protein	A0A0B5CTT3	Listeria_phage	1.2e-80	100.0
WP_012582420.1\|2145892_2146837_-	N-acetylmuramoyl-L-alanine amidase	Q8W5Y8	Listeria_phage	9.5e-168	91.7
WP_012582419.1\|2146829_2147090_-\|holin	phage holin	Q8W5Y9	Listeria_phage	1.6e-40	100.0
WP_012582418.1\|2147110_2147515_-	hypothetical protein	Q8W5Z0	Listeria_phage	2.8e-44	90.3
WP_003743972.1\|2147493_2147937_-	hypothetical protein	Q8W5Z1	Listeria_phage	8.0e-77	100.0
WP_012582417.1\|2147973_2148132_-	hypothetical protein	Q9T1A1	Listeria_phage	2.5e-12	78.8
WP_050897660.1\|2148136_2148415_-	hypothetical protein	A8ATB3	Listeria_phage	2.9e-16	55.7
WP_061671718.1\|2148411_2149497_-\|plate	BppU family phage baseplate upper protein	A0A0B5D119	Listeria_phage	3.2e-111	88.3
WP_003725057.1\|2149493_2150522_-	hypothetical protein	A0A0B5D0C2	Listeria_phage	7.1e-193	98.8
WP_003725058.1\|2150518_2151532_-\|tail	phage tail protein	A0A0B5CYL4	Listeria_phage	7.5e-187	99.4
WP_003734899.1\|2151544_2152369_-\|tail	phage tail family protein	A0A0B5CTY7	Listeria_phage	5.0e-157	99.3
WP_003734900.1\|2152372_2157172_-\|tail	phage tail tape measure protein	A0A0B5CTS6	Listeria_phage	0.0e+00	88.1
WP_072218650.1\|2157176_2157488_-	hypothetical protein	A0A0B5D116	Listeria_phage	1.2e-42	98.9
WP_003734902.1\|2157484_2157916_-	hypothetical protein	A0A0B5D0B8	Listeria_phage	4.2e-70	95.1
WP_003734903.1\|2157965_2158652_-	Ig domain-containing protein	A8ATV6	Listeria_phage	2.7e-108	92.1
WP_003725064.1\|2158656_2159028_-	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_003734904.1\|2159024_2159342_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	2.5e-48	93.3
WP_003734905.1\|2159331_2159697_-	hypothetical protein	A8ATV3	Listeria_phage	8.4e-64	97.5
WP_003734906.1\|2159696_2160050_-	hypothetical protein	A8ATV2	Listeria_phage	1.7e-61	99.1
WP_003734907.1\|2160050_2160218_-	hypothetical protein	A8ATV1	Listeria_phage	2.2e-11	97.1
WP_003734908.1\|2160230_2161103_-	hypothetical protein	A8ATV0	Listeria_phage	4.7e-161	99.3
WP_003734909.1\|2161125_2161680_-	hypothetical protein	A8ATU9	Listeria_phage	2.8e-87	97.8
WP_003734910.1\|2161775_2162819_-	hypothetical protein	A0A0B5D111	Listeria_phage	1.2e-200	100.0
WP_003734911.1\|2162823_2164380_-	hypothetical protein	A0A0B5D0A6	Listeria_phage	3.7e-302	100.0
WP_049872499.1\|2164394_2165741_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	2.0e-264	99.8
WP_061671719.1\|2165706_2166447_-	TerS	A0A0B5CTX0	Listeria_phage	4.1e-134	99.2
WP_069002585.1\|2166486_2166714_-	hypothetical protein	A8AU06	Listeria_phage	6.2e-33	97.3
WP_069002584.1\|2166761_2167364_-	hypothetical protein	NA	NA	NA	NA
WP_003759676.1\|2167488_2167806_+	hypothetical protein	NA	NA	NA	NA
WP_003734974.1\|2167917_2168490_-	sigma-70 family RNA polymerase sigma factor	A0A0B5D145	Listeria_phage	6.9e-89	87.4
WP_003734975.1\|2168577_2168733_-	DUF3954 domain-containing protein	A0A0B5D0E9	Listeria_phage	1.1e-22	98.0
WP_171424432.1\|2168877_2169261_-	DUF2481 family protein	A8ASP8	Listeria_phage	2.2e-62	95.3
WP_171424434.1\|2169264_2169669_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	8.7e-62	88.8
WP_031669404.1\|2169613_2169796_-	hypothetical protein	A8ASP6	Listeria_phage	2.2e-17	81.0
WP_171424435.1\|2169814_2170294_-	single-stranded DNA-binding protein	A0A0M5M0X4	Mycobacterium_phage	2.0e-12	37.0
WP_171424437.1\|2170293_2170551_-	hypothetical protein	NA	NA	NA	NA
WP_171424439.1\|2170556_2170853_-	hypothetical protein	NA	NA	NA	NA
2170838:2170853	attL	NA	NA	NA	NA
WP_171424440.1\|2170870_2171086_-	hypothetical protein	NA	NA	NA	NA
WP_058831666.1\|2171082_2171289_-	hypothetical protein	NA	NA	NA	NA
WP_171424442.1\|2171289_2171652_-	hypothetical protein	NA	NA	NA	NA
WP_171424443.1\|2171641_2172043_-	hypothetical protein	NA	NA	NA	NA
WP_171424445.1\|2172238_2172457_-	hypothetical protein	NA	NA	NA	NA
WP_171424447.1\|2172453_2172627_-	hypothetical protein	A0A059T7N2	Listeria_phage	2.5e-26	98.2
WP_038330207.1\|2172627_2173071_-	hypothetical protein	A0A059T7V5	Listeria_phage	3.4e-67	100.0
WP_015987084.1\|2173057_2173234_-	hypothetical protein	A8ASP0	Listeria_phage	5.1e-27	100.0
WP_015987082.1\|2173230_2173599_-	hypothetical protein	A8ASN9	Listeria_phage	1.4e-66	100.0
WP_015987081.1\|2173595_2174204_-	DUF1642 domain-containing protein	A8ASN8	Listeria_phage	1.3e-114	100.0
WP_015987080.1\|2174200_2174410_-	hypothetical protein	A8ASN7	Listeria_phage	2.6e-30	100.0
WP_171424448.1\|2174406_2174691_-	hypothetical protein	A8ASN6	Listeria_phage	1.5e-47	96.8
WP_010990198.1\|2174706_2174874_-	hypothetical protein	A8ASN5	Listeria_phage	5.8e-20	92.6
WP_171424450.1\|2174870_2175848_-	phage replisome organizer N-terminal domain-containing protein	A8ASN4	Listeria_phage	8.3e-151	85.9
WP_003734951.1\|2175864_2176524_-	ERF family protein	A8ASN3	Listeria_phage	8.5e-91	84.5
WP_003734952.1\|2176529_2177006_-	siphovirus Gp157 family protein	A8ASN2	Listeria_phage	1.3e-56	94.3
WP_003734954.1\|2177501_2177690_-	hypothetical protein	A0A0B5CU43	Listeria_phage	4.5e-29	100.0
WP_003734955.1\|2177705_2177996_-	hypothetical protein	A0A0B5CYM2	Listeria_phage	1.0e-48	100.0
WP_061671716.1\|2178020_2178554_-	hypothetical protein	A0A0B5CU01	Listeria_phage	8.1e-92	100.0
WP_061671715.1\|2178676_2179456_-	phage antirepressor KilAC domain-containing protein	A0A0B5CTU1	Listeria_phage	3.0e-143	100.0
WP_003719466.1\|2179520_2179724_+	hypothetical protein	A0A0B5D131	Listeria_phage	9.8e-30	100.0
WP_003734252.1\|2179782_2179995_-	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	3.7e-32	100.0
WP_003734251.1\|2180160_2180583_+	helix-turn-helix transcriptional regulator	A0A0B5CYL9	Listeria_phage	1.4e-70	100.0
WP_023552485.1\|2180598_2181024_+	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	5.0e-76	99.3
WP_003734249.1\|2181038_2181644_+	hypothetical protein	NA	NA	NA	NA
WP_003733643.1\|2181868_2182756_+	hypothetical protein	A0A0B5CYL8	Listeria_phage	5.6e-162	100.0
WP_012582371.1\|2182835_2184029_+\|integrase	site-specific integrase	A0A0B5CTZ4	Listeria_phage	2.2e-217	100.0
WP_003726075.1\|2184114_2184507_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_003727703.1\|2184528_2184966_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_003726076.1\|2185160_2185907_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_003728530.1\|2185912_2186710_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_003728531.1\|2186712_2187579_-	energy-coupling factor ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-10	25.5
2187743:2187758	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2589633 : 2596160

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728215.1\|2589633_2590086_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|2590091_2590427_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003724946.1\|2590643_2591072_+	hypothetical protein	NA	NA	NA	NA
WP_003724947.1\|2591083_2591500_+	hypothetical protein	A8ASQ1	Listeria_phage	1.3e-20	38.6
WP_003728212.1\|2591779_2592169_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|2592181_2592694_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|2592741_2593044_+	hypothetical protein	NA	NA	NA	NA
WP_003740367.1\|2593085_2593490_+	hypothetical protein	NA	NA	NA	NA
WP_003731178.1\|2593476_2595345_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_003724951.1\|2595341_2596160_+\|tail	phage tail family protein	A0A2H4JAE4	uncultured_Caudovirales_phage	1.7e-40	34.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage