CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP051858	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR chromosome, complete genome	3 crisprs	csa3,WYL,DEDDh,cas14k,cas3,c2c9_V-U4,cas14j,DinG	0	3	8	0
NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	0 crisprs	RT,cas4	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP051858_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051858_1

2117760-2117876

Orphan

Consensus_repeat	Method
CTTAAACAAGCGTTTGATTAATTCTCCATTTTTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051858_1

>merge|NZ_CP051858|1|2117760-2117876|CRISPRCasFinder
CTTAAACAAGCGTTTGATTAATTCTCCATTTTTCTTCGTTAACCTTTGAACTACATGAGTTTCTTTCTACCGAACATACAGCTTAAACAAGCGTTTGATTAATTCTCCATTTTTCTT

>NZ_CP051858|1|1|2117760-2117876|CRISPRCasFinder
CTTAAACAAGCGTTTGATTAATTCTCCATTTTTCTT	CGTTAACCTTTGAACTACATGAGTTTCTTTCTACCGAACATACAG
CTTAAACAAGCGTTTGATTAATTCTCCATTTTTCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051858.1\|WP_000026896.1\|2116773_2117157_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP051858.1\|WP_001180555.1\|2121848_2122034_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051858.1\|WP_001226751.1\|2111078_2111885_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP051858.1\|WP_000640870.1\|2115698_2116043_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224572
NZ_CP051858.1\|WP_000864824.1\|2122147_2122867_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293807
NZ_CP051858.1\|WP_001206329.1\|2125155_2126328_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|181072
NZ_CP051858.1\|WP_001002987.1\|2121586_2121835_-\|spore-coat-protein	unknown	unknown	gnl\|CDD\|377935
NZ_CP051858.1\|WP_000666176.1\|2119354_2120368_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|379113
NZ_CP051858.1\|WP_000359401.1\|2112792_2113458_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP051858.1\|WP_000416287.1\|2122982_2124767_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173850
NZ_CP051858.1\|WP_001242142.1\|2114889_2115234_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051858.1\|WP_000713769.1\|2118647_2119295_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239481
NZ_CP051858.1\|WP_106081637.1\|2120390_2121560_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133427
NZ_CP051858.1\|WP_000486369.1\|2126349_2128731_-\|3-hydroxyacyl-CoA-dehydrogenase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|224170
NZ_CP051858.1\|WP_000735090.1\|2111956_2112769_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP051858.1\|WP_003280640.1\|2115386_2115695_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP051858.1\|WP_000826875.1\|2117975_2118503_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051858.1\|WP_000218968.1\|2117198_2117564_-\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NZ_CP051858.1\|WP_000929162.1\|2110054_2110840_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP051858.1\|WP_000601782.1\|2113450_2114476_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058

Protein	Function_ID	Function_description	E-value
NZ_CP051858.1\|WP_000026896.1\|2116773_2117157_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	6.96592e-70
NZ_CP051858.1\|WP_001226751.1\|2111078_2111885_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	5.121e-112
NZ_CP051858.1\|WP_000640870.1\|2115698_2116043_-\|hypothetical-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.03274e-21
NZ_CP051858.1\|WP_000864824.1\|2122147_2122867_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	6.40912e-64
NZ_CP051858.1\|WP_001206329.1\|2125155_2126328_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|181072	PRK07661, PRK07661, acetyl-CoA C-acetyltransferase.	0
NZ_CP051858.1\|WP_001002987.1\|2121586_2121835_-\|spore-coat-protein	gnl\|CDD\|377935	pfam07875, Coat_F, Coat F domain. The Coat F proteins, which contribute to the Bacillales spore coat. It occurs multiple times in the genomes it is found in.	9.62029e-15
NZ_CP051858.1\|WP_000666176.1\|2119354_2120368_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|379113	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.	1.25572e-86
NZ_CP051858.1\|WP_000359401.1\|2112792_2113458_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	8.57648e-99
NZ_CP051858.1\|WP_003280640.1\|2115386_2115695_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	4.18685e-18
NZ_CP051858.1\|WP_106081637.1\|2120390_2121560_-\|L-lactate-dehydrogenase	gnl\|CDD\|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP051858.1\|WP_000486369.1\|2126349_2128731_-\|3-hydroxyacyl-CoA-dehydrogenase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|224170	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism].	5.25516e-83
NZ_CP051858.1\|WP_000416287.1\|2122982_2124767_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173850	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.	0
NZ_CP051858.1\|WP_000713769.1\|2118647_2119295_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239481	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.	8.02684e-16
NZ_CP051858.1\|WP_000735090.1\|2111956_2112769_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	6.69253e-111
NZ_CP051858.1\|WP_000218968.1\|2117198_2117564_-\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	6.13259e-61
NZ_CP051858.1\|WP_000929162.1\|2110054_2110840_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	5.15323e-150
NZ_CP051858.1\|WP_000601782.1\|2113450_2114476_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.96413e-176

>NZ_CP051858.1|WP_000218968.1|2117198_2117564_-|arsenate-reductase-family-protein
MTVTFYSYPKCGTCQKAKKWFEANDVAYEMIHIVENPPSKEDLRNLHEKSELPLKKFFNTSGMRYRELGLKDKLKDASEDEMYELLASDGMLIKRPIVTDGTNVTLGFNEEQFESVWKKYQ
>NZ_CP051858.1|WP_000026896.1|2116773_2117157_-|glycine-cleavage-system-protein-GcvH
MSIPNNLRYSEEHEWVKTEGNEVVIGITHFAQGELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD
>NZ_CP051858.1|WP_000640870.1|2115698_2116043_-|hypothetical-protein
MIYVEKVIIVEGTSDRRKIESIIREPVEIVCTNGTIGLSKMDELVDQFFDKEVYVLVDADDAGEKLRKQFRKEFPQAEHIYIDRSYREVATAPSTHLANVLWGADIDVYTEYLR
>NZ_CP051858.1|WP_003280640.1|2115386_2115695_-|thioredoxin-family-protein
MIEVIDWTGAEATSLIENEEKTVLYVYTPMCGTCQLAKKMLTVVEMTIEELKIGMLDLNYAPHLAKEYGIESVPCLLVFENGTLMKKIYAFHSVEYLYTELK
>NZ_CP051858.1|WP_001242142.1|2114889_2115234_-|hypothetical-protein
MRLYSLLQSFVNYANGQYHLEPLLRREEKTVNFRLGDESCSLQISRDYIELVHEERGTEQIICLDEKDIEQLVNGNVRLQMLMNDGRVQYSGTYRTMLLVESMFHICKPMPVGA
>NZ_CP051858.1|WP_000601782.1|2113450_2114476_-|methionine-ABC-transporter-ATP-binding-protein
MILLENVKKIYKAKSGDVTAVDNANLKIEKGEIFGVIGYSGAGKSSLIRLFNQLEKPTSGQITIANRVISTITGSELRKARQEIGMIFQHFNLLWSRTVRENIEFPLEIAGVDKTKRRKRVDELIHLVGLEGRGDAYPSQLSGGQKQRVGIARALANNPQVLLCDEATSALDPETTDQILDLLLDINKRLGLTIVLITHEMHVIRKICNRVAVMERGKIVETGPVLDVFRNPKQDITKRFVQQLTDSEDTNETIESLIEKYPDGKVIRLQFIGEAVERPVLQRLMQRSDIEVSILQGNIAQTNNGSYGSLVVHLNGEETAIQQAIEGIHQDQVELEVIAHG
>NZ_CP051858.1|WP_000359401.1|2112792_2113458_-|ABC-transporter-permease
MDKLLANVDWNQMLEATGETLYMTAIAALATFVLGLILGLLLFMTAKDNLWENKSINTVIGAFVNIFRSIPFIILIILLIPFTKILLGTILGASAALPALIIGAAPFYARMVEIALREIDKGVIEASKAMGAKTSTIILKVLIPESLPALVSGITVTTIALVGYTAMAGVVGAGGLGTLAYLEGFQRGNNDVTIVATICVLLVVFLIQWIGDSLTTRIDKR
>NZ_CP051858.1|WP_000735090.1|2111956_2112769_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLLLTALISTSIFGLAACGGKDKDEKKLVVGASNVPHAEILEKAKPLLEKKGIELEVKKFQDYVLPNKSLADKDLDANYFQHIPYLEKEIKDKKYDFEVAGKIHLEPIGVYSQKYKSLKELPDGATIIMSNSVADHGRGLAILQKEGILKVKDGVDPVKATPKDIADNPKNLKFKTDIEPGLLPQVYNNKEGDAVLINSNYAIDAKLNPEKDAIAIEGNDSPYANIVAVRKGDKDKKEIKALVEVLHSKEIEDFINKEYKGAVVPVKE
>NZ_CP051858.1|WP_001226751.1|2111078_2111885_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MRKILLSVVTALSVFTLAACGGKEENKLVVGASNVPHAVILEKAQPILEKKGIKLEIKKFQDYVLPNKALADKEIDANYFQHIPYLDKEIQEKGYKIVNAGKIHLEPMGIYSKKYKSLKELPDGGTVIMSNNVAERGRMLALLQKGGVIKLKDGVDVVKATVKDVVENPKNLKFKTDVEPGLSPKLYENNEGDALFINSNYAIDAKLNPTKDAIAIEGSDSPYANIIAVRKGDEKKKEIKELVEVLHSKEIQDFINKEYKGAVLPISE
>NZ_CP051858.1|WP_000929162.1|2110054_2110840_-|Fe-S-cluster-assembly-ATPase-SufC
MAGSTLTVKDLHVSIDGKEILKGVNLEVKGGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTEGSIIIDGEDVLEMEVDERAQAGLFLAMQYPSEISGVTNADFLRSAINARREEGDEISLMKFIRTLDKNMEFLEMDPEMAQRYLNEGFSGGEKKRNEILQLMMIEPKIAILDEIDSGLDIDALKVVSKGINQMRGEEFGCLMITHYQRLLNYITPDFVHVMMNGRIVKSGGPELAQRLEAEGYDWIKKELGIEDETAEQEA
>NZ_CP051858.1|WP_000826875.1|2117975_2118503_-|hypothetical-protein
MKRLSYFLFFILICLVGAGCAKDKEGEKLEYNGRALVIGVVGEKPKDTFRNVKFEEMKLEALEKKSKEVDGFLIMKDHFQEASTEQYKNVFSSLKKPVFFIGLQDKLYSIFITKGIEYNSARKDVNAMYTQGFANIGSGEGQQWAIGLSNGGNTEESIHNMYIVVFQTIADYLNR
>NZ_CP051858.1|WP_000713769.1|2118647_2119295_+|phosphatase-PAP2-family-protein
MKKFKLSSFLPLSYILLLVLVSPLYDVLNKSTVHAVDVTTVVDDWIPFVKAFIIPYLLWFPYLYGALIYYCFADRKQYYVTLSSVIFGKLACFSIYYFWQTTVPRPTVVGTDVFSELVRYIYSIDQPVNCFPSIHVLTTFVIMLAAFKRREQHAFEYYILTFFGTLIILSTLFTKQHAFLDAVSGMTLASILYFGVQLLLAKEPIKVPVKQNHKM
>NZ_CP051858.1|WP_000666176.1|2119354_2120368_-|PTS-sugar-transporter-subunit-IIC
MKEYIMSRVFKASAGIAQGIFVSLGIGLLIENIGRIVDIPLLITIGVVAKSLMAPAIGAGIAFMLGANGLVIFSAMVAGAIGAGSISITEAGLIIKTGEPIGALLTATLAVYIGKRLSGKTALDMMLVPFAAILGSGLVGIWLSHNITPVLNTVGAFIKDSSAGSPFIASIVIAVVWGLLLISPASSAALAIALSLDGVAGGAALAGCVAQFIGFSVISAKENNLGGILAQALCTPKVQLPNITKNPMILVPTVVASAIVGPVSALIFQLEAGKEIAGLGLSSLIAPINLISSEGWEVVPAMVITYIIIPVAVSYILYIALKKAGRIHSGDMTVPQS
>NZ_CP051858.1|WP_106081637.1|2120390_2121560_-|L-lactate-dehydrogenase
MRSFYFLYVNKYIINIFPVVTNMTKMEYNNSQKGQKLCSIFHKVSMVSIVGTSIIKNVKNKRNRLYDQLGEIAMKRHTRKIAIIGTGLVGSSCAYSIVNQGICEELLLIDINHERAVGEAMDLSHCINFTNTRTKVYAGSYEDCKDMDIVIITAGPAPKPGQSRLDTLGASAKIMESVVGGVMESGFDGIFLLASNPVDIITYEVWKLSGLPRNRVIGTGTSLDSSRLRTILSEMLHVDPRSIHGYSLGEHGDSQMVAWSHVTVGGKPILQILEEQKERFGEIDLDEIVEKTAKAGWEIYKRKGTTYYGIGNSLAYIASSIFNDDHRVIAVSAILDGEYGEYDICTGVPAIITRDGIREVVELNLTEDEESRFAKSNDILRDYMKTIGY
>NZ_CP051858.1|WP_001002987.1|2121586_2121835_-|spore-coat-protein
MNEKDMVNDYLAGLNASLTSYANYIAQSDNEQLHQTLIQIRNQDEMRQRNMYEYAKQKSYYKPAAPANPMIVQQLKSQLSAE
>NZ_CP051858.1|WP_001180555.1|2121848_2122034_-|hypothetical-protein
MQNLTELEVENLRHLIGGHATIINKLEQYAQTCTDPQLKQMLQKDAQDARNTKQQLMTFLG
>NZ_CP051858.1|WP_000864824.1|2122147_2122867_-|MBL-fold-metallo-hydrolase
MKVISVGTVHQIAFLPRLFPINCYFVEEETGLTLIDAALPFCAKKILQSARKIGKPITNIVITHAHDDHVGALDVIKQVLPDVPVYISKRDACLLEGDKVLQEGERNTPIKVGVSKQINTIPDILLQEGDKVGSLVAIGAPGHTPGSMAFLDTRNDALIVGDAFQTRGGLAVAGQLKWLFPFPMFGTWDAEVSLASAQKLLEYKPSLLATGHGKMIENPLIQMQRAIEEAERNLSRKSL
>NZ_CP051858.1|WP_000416287.1|2122982_2124767_-|acyl-CoA-dehydrogenase-family-protein
MEKTVGNAVKGGSFLVDEITIDQVFTPEDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKIDGEHFSAFIVEKEYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRKAMKGELPLLQKAQKLQEELMMMMPEEVGDEPLALQKYLVTNAKKIGLMVAGLAAQKYGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLYTEVFCQEAFNEIEADAKETLIAVENGDMLRMMLSSLRKLTRHTPLNVIPKKREIAAKILEDERYTV
>NZ_CP051858.1|WP_001206329.1|2125155_2126328_-|acetyl-CoA-C-acetyltransferase
MREAVIVAGARTPIGKAKRGSLKTVRPDDLGALVVKETLKRANYEGPIDDLIFGCAMPEAEQGLNMARNIGGLAGLSYDVPAITINRYCSSGLQSIAYGAERIMLGHSEAVLSGGAESMSLVPMMGHVVRPNSRLVEAAPEYYMGMGHTAEQVAVKYGISREEQDAFAVRSHQRAAKALAAGNFADETVSVDVTLRSVGSNNKLQEETIIFAQDEGVRAETSLDILGKLRPAFNVRGSVTAGNSSQMSDGAASVLLMDREKAVSDGMKPLAKFRSFAVAGVPPEVMGIGPIAAIPKALKLAGLELSDIGLFELNEAFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKRRNEQFGIVTMCIGGGMGAAGVFELL
>NZ_CP051858.1|WP_000486369.1|2126349_2128731_-|3-hydroxyacyl-CoA-dehydrogenase/enoyl-CoA-hydratase-family-protein
MFQIKKAAVLGSGVMGSGIAAHLANIGIPTLLLDIVPPALTKEEEAKGLTLEHKSVRNRFSNTAVQKLLKQKPAPLTVKGNLALIEAGNLEDDLERLADVDWIIEVVVENLDIKKKLFEKVDAVRKPGSIVSSNTSGISVEKMAEGRSDDFQKHFLGTHFFNPPRYLKLLEVIPTKETDPQVLSFMKLFGEDVLGKGVVIAKDTPNFIGNRIGTYGLLVTLQEMIKRGYSIGEVDSVTGPLIGRPKSATFRTLDVVGLDTFVHVANNVYENVQEEERDVFKVPAFMHDMLEKKWLGSKTGQGFFLKQGKEILELNPETMEYEARKKLKAASVELSKQEKGLANKLKALVYAKDRAGELLWNIITPTLLYSAKLHKEIADDIVAIDQAMKWGFGWEQGPFEVWDAIGVEKSVQKMEENGVVVPTWVKEMLEKGFTTFYKHDNGDSYYYDNGEYKLIERNKKAISLKQLKAKNGVLKKNSGASLIDLGDGILCLEFHSKSNAIGMDITQMINYAVDEVEKNYKGLVIGNQSKNFCVGANLAMILMEAQDDNYFEIELVVKNFQDAMTKIKYSSKPVVAAPYGMTLGGGTEVCLPAASIQASSETYMGLVEVGVGLIPGGGGNKELYIKHLNKMPNGVEFDLQKVANKVFESVAMAKVSTSAQEAVSNNFLGDKDGISVNGDHLLYDAKQKALALYEAGYKAPIRKKIPVVGETGYATLVLGAEAMHLSGYISEHDLHIAKKLAYVIAGGKVPYGTEVDEQYLLDVEREAFISLVSEMKSQARMQHMLVKGKPLRN

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Crispr_ID: NZ_CP051858_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051858_2

2373198-2373331

Orphan

Consensus_repeat	Method
GTTGATTTCTCTTCTTTTTGAGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP051858_2

>merge|NZ_CP051858|2|2373198-2373331|CRISPRCasFinder
GTTGATTTTTCTTCTTTCTTCGGTTCTTCTTTTTTGTCACTAGTTGAACCGCTTGTTGATTTCTCTTCTTTTTGAGACTTGTCTTCTGTTTTATTTTCTGGTTTCGTGCTCGTTGACTTCTCTTCTTTTTGAGA

>NZ_CP051858|2|2|2373198-2373331|CRISPRCasFinder
GTTGATTTTTCTTCTTTCTTCGG	TTCTTCTTTTTTGTCACTAGTTGAACCGCTT
GTTGATTTCTCTTCTTTTTGAGA	CTTGTCTTCTGTTTTATTTTCTGGTTTCGTGCTC
GTTGACTTCTCTTCTTTTTGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051858.1\|WP_000672657.1\|2377056_2378076_-\|stage-II-sporulation-protein-D	unknown	unknown	gnl\|CDD\|274332
NZ_CP051858.1\|WP_000998960.1\|2382345_2383848_-\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235622
NZ_CP051858.1\|WP_000393115.1\|2368243_2368987_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226453
NZ_CP051858.1\|WP_000243437.1\|2375950_2376958_-\|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP051858.1\|WP_014894859.1\|2366673_2367441_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226870
NZ_CP051858.1\|WP_000170827.1\|2374926_2375769_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP051858.1\|WP_000544012.1\|2372294_2372567_-\|sporulation-transcriptional-regulator-SpoIIID	unknown	unknown	gnl\|CDD\|378813
NZ_CP051858.1\|WP_000467945.1\|2369250_2369928_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP051858.1\|WP_000931959.1\|2370269_2370704_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP051858.1\|WP_000847747.1\|2364877_2365537_-\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	unknown	unknown	gnl\|CDD\|274398
NZ_CP051858.1\|WP_000057889.1\|2380384_2380621_-\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|227173
NZ_CP051858.1\|WP_000144420.1\|2374219_2374927_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP051858.1\|WP_003272396.1\|2379628_2380339_-\|YwmB-family-TATA-box-binding-protein	unknown	unknown	gnl\|CDD\|370056
NZ_CP051858.1\|WP_000457978.1\|2371132_2372134_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237563
NZ_CP051858.1\|WP_001207164.1\|2367552_2368254_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP051858.1\|WP_000367477.1\|2380823_2382344_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
NZ_CP051858.1\|WP_000411275.1\|2378284_2379589_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP051858.1\|WP_000568213.1\|2383844_2385707_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_CP051858.1\|WP_000008903.1\|2372875_2373010_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051858.1\|WP_000757801.1\|2365555_2366434_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131

Protein	Function_ID	Function_description	E-value
NZ_CP051858.1\|WP_000672657.1\|2377056_2378076_-\|stage-II-sporulation-protein-D	gnl\|CDD\|274332	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell. [Cellular processes, Sporulation and germination].	6.60741e-135
NZ_CP051858.1\|WP_000998960.1\|2382345_2383848_-\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235622	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed.	1.2119e-172
NZ_CP051858.1\|WP_000393115.1\|2368243_2368987_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	1.97657e-83
NZ_CP051858.1\|WP_000243437.1\|2375950_2376958_-\|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.63553e-31
NZ_CP051858.1\|WP_014894859.1\|2366673_2367441_-\|tyrosine-protein-phosphatase	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	4.47552e-106
NZ_CP051858.1\|WP_000170827.1\|2374926_2375769_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.14749e-90
NZ_CP051858.1\|WP_000544012.1\|2372294_2372567_-\|sporulation-transcriptional-regulator-SpoIIID	gnl\|CDD\|378813	pfam12116, SpoIIID, Stage III sporulation protein D. This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.	1.17272e-38
NZ_CP051858.1\|WP_000467945.1\|2369250_2369928_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	5.32085e-82
NZ_CP051858.1\|WP_000931959.1\|2370269_2370704_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	5.26499e-95
NZ_CP051858.1\|WP_000847747.1\|2364877_2365537_-\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	9.86921e-99
NZ_CP051858.1\|WP_000057889.1\|2380384_2380621_-\|DUF1146-domain-containing-protein	gnl\|CDD\|227173	COG4836, COG4836, Predicted membrane protein [Function unknown].	1.23409e-23
NZ_CP051858.1\|WP_000144420.1\|2374219_2374927_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	3.22291e-09
NZ_CP051858.1\|WP_003272396.1\|2379628_2380339_-\|YwmB-family-TATA-box-binding-protein	gnl\|CDD\|370056	pfam08680, DUF1779, TATA-box binding. TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis contains a circularly permuted TATA-box binding protein-like fold. Jian-Xiang Liu, Qi Xie, Jun Lin. Protein Structural Data Mining and Evolutionary Bioinformatic Analysis on Domains of TATA-box Binding Protein-like Fold. Life Science Journal 2014; 11(2): 298-302 (not yet in PubMed 27-02-2014).	1.11897e-33
NZ_CP051858.1\|WP_000457978.1\|2371132_2372134_-\|rod-shape-determining-protein	gnl\|CDD\|237563	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.	0
NZ_CP051858.1\|WP_001207164.1\|2367552_2368254_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	8.02666e-84
NZ_CP051858.1\|WP_000367477.1\|2380823_2382344_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	1.04015e-150
NZ_CP051858.1\|WP_000411275.1\|2378284_2379589_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP051858.1\|WP_000568213.1\|2383844_2385707_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_CP051858.1\|WP_000757801.1\|2365555_2366434_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	0

>NZ_CP051858.1|WP_000008903.1|2372875_2373010_-|hypothetical-protein
MSFLFVLSTAIILLFVLFTLYYYIAGKKEVPHHQLLEEELEREE
>NZ_CP051858.1|WP_000544012.1|2372294_2372567_-|sporulation-transcriptional-regulator-SpoIIID
MHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ
>NZ_CP051858.1|WP_000457978.1|2371132_2372134_-|rod-shape-determining-protein
MFARDIGIDLGTANVLIHVKGKGIVLNEPSVVAIDRNSGKVLAVGEEARSMVGRTPGNIVAIRPLKDGVIADFEITEAMLKYFINKLDVKSFFSKPRILICCPTNITSVEQKAIREAAERSGGKTVFLEEEPKVAAVGAGMEIFQPSGNMVVDIGGGTTDIAVLSMGDIVTSSSIKMAGDKFDMEILNYIKRKYKLLIGERTSEDIKIKVGTVFPGARSEELEIRGRDMVTGLPRTITVCSEEITEALKENAAVIVQAAKGVLERTPPELSADIIDRGVILTGGGALLHGIDMLLAEELKVPVLIAENPMHCVAVGTGIMLENIDRLPKRALR
>NZ_CP051858.1|WP_000931959.1|2370269_2370704_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGRLAFFAGIDNCRFKKQVRPGDQLRLEVEMTRVRGPIGKGKAIATVDGEVACEAEITFAIGDKKE
>NZ_CP051858.1|WP_000467945.1|2369250_2369928_-|CpsD/CapB-family-tyrosine-protein-kinase
MFGRKKRKPLRQLITHKEPKSRITEQYRNIRTNIEFTSVDNHVRSIIVTSADPGDGKTTTIANLAVVFGQQGKKVLLIGADLRKPTIQNLFAIHSSNGLTNLLSGQAKLMQCIQKTDIENVYLMAAGPIPPNPAELLGSRAMDEALLEAYNMFDIILIDTPPVLAVTDAQILANKCDGIVLVVRSEKTEKDKIVKAKQILDKASGKLLGVVLNDKREEKEQYGYY
>NZ_CP051858.1|WP_000393115.1|2368243_2368987_-|capsular-polysaccharide-biosynthesis-protein
MEETISLKELFHIFKKRLAMILVIAFGAAIVSAIISFFFMTPIYQSSTQILVNQKKQEGAMFQAGEIQTNIQLTNTYKVIIKSPVILEQVNEKLNLNMTAQELTKKVNVANEKDSQVIAVTAEDKDPKIARDIANATADVFKGEVAKIMNVDNVTVISKAEVAENQSPIKPAPMLNIAIAFIVGLMASVGLAFLLEYLDNTVKKEEDVENLLGLPVLGIVARMDEETLNVKSHAPSSRKVRGQTIGS
>NZ_CP051858.1|WP_001207164.1|2367552_2368254_-|CpsD/CapB-family-tyrosine-protein-kinase
MALNLFKKKKNHRQRRQLIAHQQPKSPISEQYRNIRTNIEFAAVDTNLHSLMVTSANPSEGKTTTTANMAVVFAQQGKKVLLIDADMRKPAMHQMFQVDNIFGLTNVLTHSERLEKCVQTTSVDNLHFLACGPIPPNPAELLGSKSMKELLGQAYSMYDLVIFDMPPILAVTDAQIMANVCDASILVVRSESTEKETAVKAKGLLESAKGKLLGVVLNDREREEGLYYYYGAN
>NZ_CP051858.1|WP_014894859.1|2366673_2367441_-|tyrosine-protein-phosphatase
MIDLHCHILPGIDDGAQTITDSLTMAQQAVSEGIHTIVATPHHQNGKYINEYTSVIHHVKQLNDELQQYNIPLTILPGQEIRLYGDLLEDYEAGKIVTLNETNKYIFIEFPSNHVPRYAEHLLYELRVKGMIPIIVHPERNAELIERPDKLYNLVNKGALTQVTAGSLLGNFGKKIKKFSLQLVEHNLTHMVASDAHNTTSRGFHLAESYELIEKEFGTSVMSDLKENPYLLISGKAIYKEDPEQIRRKKLFGIF
>NZ_CP051858.1|WP_000757801.1|2365555_2366434_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKKVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAIESGIEDIIIVTGKGKRAIEDHFDHSFELEQNLLEKGKYEMLEKVQASSKINIHYIRQKEPKGLGHAVWCARKFIGNEPFAVLLGDDIVQAETPCLRQLMNQYEGTQSSVIGVQTVPENETHRYGIIDPIERNGRSYQVRQFVEKPAEGTAPSDLAIMGRYVLTPEIFMFLEDQQTGAGGEIQLTDAIQRLNEMQRVFAYDFEGTRYDVGEKFGFIRTTIEMALQQKELKEQLIKYMVELVHKEAIK
>NZ_CP051858.1|WP_000847747.1|2364877_2365537_-|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase
MKTGENIARDYQITPDTQTIQVESNQSKIYLGIKYLLDVMFSLVGLILLMPVILIFSILIILESPGSPFYLQERLGLNGKRFKVIKLRSMRNDAEKNGAKWAEKNDPRVTKIGLFIRKTRIDELPQLFNILKGDMSLVGPRPERPIFTEKFERDIPGFKKRLEVKPGLTGWAQVNGGYEITPKEKLNLDVYYINHASIILDFKIIIKTVRVVITGDGAR
>NZ_CP051858.1|WP_000144420.1|2374219_2374927_-|ABC-transporter-permease
MTFSMKRFSAIVRKEINDAGKNSQVILMALLPILLAVFYSNMDSIKEFFAGFVIVMTITMVGSYVQAIIIAEEKEKHTLRVLMLSPASPIEVILGKSVLTVFFVLASSFISLVILDTFKGNIGMLVIIILIGTLLCVVLGTIVGLLSQNIAQTSILGLPIFIIFIMGPMLQEMVKNEFIIKVVNLLPTNHVMEALQKVIKGEGFIAIQEHILNNTIWTICLIILCIIVYKKKQLD
>NZ_CP051858.1|WP_000170827.1|2374926_2375769_-|ABC-transporter-ATP-binding-protein
MTLAIEMKDVMKSFDGKTALRNVNIEVKQGEIFGFLGPSGSGKTTTVKILTSQLLHSVGTVRVLGKDITGPSSIDYKRIGILTDNSGLYERLSIYDNLLLFCDLYDCKKERIDEVLAQVNLLDDKKTPVKKLSKGMKQRVTLARAILHKPDILFLDEPTSALDPVNVQNIHKILKDLNEEGTTIFLTTHNMDEAETLCNRIAFLCGGEIVALDTPENLRLQYAKDQIEVVLKDKQKEVVQKDELGAKRISEWMKKGELLSIHSHEPTLGDIFIEVTGRGL
>NZ_CP051858.1|WP_000243437.1|2375950_2376958_-|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein
MVLLELKQLGKTNQLPVIDLKVAKGQCVVLQCNNHTAKVLHRIIIGEEEASTGNVLFEGGAIGKKNYPRIGFCFLKDEAYDRLKVKEYFKFLIGLYESKISIEEVVQSVGLLDKLNVKIEKLSFSEKRRLHIGRVMIHNPDLVILEEPEQNVDIESTIIIRKAIMKMKEQGKAIFITSSFLSDALSLTEDVYILNNDGVKKIEIEQEEVEEVGEEKVIQMIPQMKLERIPAKVNDKIILLDPMEIHFIETQNGVTHIHVREGDFVCALTLSELEARLTGFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDERKSSIPLSKGRMDELKGVIGL
>NZ_CP051858.1|WP_000672657.1|2377056_2378076_-|stage-II-sporulation-protein-D
MKFSKPLFITVALLIALVIIVPAALVIPFAKAKVGEETASKTPPAIESIPAPGKVDTAVQVAVYREKQKKVESLPMEEYVTGVVASEMNASFEIEALKAQALAARTFVVQRMLSGGKKNNADVTDTVKDQVYKSKEELKKQWGNNYENNLKKIEEAVSKTAGQVLTYDGKPISASFFSTSNGRTENAADYWGNDYPYLKSVDSPWDQASPKFTSEQTFTVADFQKRLGVKVLADGKVGNIKDLTEGKRVKDVAFQGKTLTGKEVREKLDLRSSDFTWKQRGDKIIITTKGFGHGVGMSQYGANGMAAEGKKYTDIVAHYYKGVEIKTMNDYEGKLMVKK
>NZ_CP051858.1|WP_000411275.1|2378284_2379589_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEKIIVRGGKRLNGTVRVEGAKNAVLPIIAAALLASDGKNVLSEVPVLSDVYTINEVLRHLNAEVVFENNQVTIDSSKELNIEAPFEYVRKMRASVQVMGPLLARNGRARIALPGGCAIGSRPIDQHLKGFEAMGAKVQVGNGFVEAYVEGELKGAKIYLDFPSVGATENIMSAATLAKGTTILENAAKEPEIVDLANFLNAMGAKVRGAGTGTIRIEGVDKLYGANHSIIPDRIEAGTFMVAAAITGGDILIENAVPEHLRSITAKMEEMGVKIIEENEGVRVIGPDKLKAVDIKTMPHPGFPTDMQSQMMALLLQADGTSMITETVFENRFMHVEEFRRMNADIKIEGRSVIMNGPNSLQGAEVGATDLRAAAALILAGLVSEGYTRVTELKHLDRGYVDFHKKLAALGATIERVNEKVEEVKEQEVSDLHA
>NZ_CP051858.1|WP_003272396.1|2379628_2380339_-|YwmB-family-TATA-box-binding-protein
MKLKLKAILIVALSVVLFLVGYREMKPISDEQKMESMIKALEKNDAKVEKWSWLARETKTISNIHTFQKLLNDVKDKANIQKWEVEQSPDGYKATSYKKFASHEERVVVTWSKENTKENTFIIFEVSGAKWDPKYVQKVNKIFSEKPIIYTCVQGVLNDKIEGVLQNKTNQVLKDLSARAIEQVEERAFVSVSAYNKKWDDALSTNREKINVQIAIRSTDNKDTIVVGTPIITSEY
>NZ_CP051858.1|WP_000057889.1|2380384_2380621_-|DUF1146-domain-containing-protein
MAQLLGQQALIAIVSHLLFITITWWALQGIHIERLMKSGKVLQTRVLLILITIAIGTSVSNFFLDYLGYSKSLTYLVK
>NZ_CP051858.1|WP_000367477.1|2380823_2382344_-|NADH-quinone-oxidoreductase-subunit-NuoN
MDMNTLLSLSWHLMVPEFIILGAAILLSICDLFFKLNHRYVALGAIAAIVLAIVSLITLYSEPAGDILNGSFVLDGFSKGFKTLLLGASALILCIAMSDDKKNPIEDKGEYYYLFLMALLGAMFMASSVDFITLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVISGGIGTAITLFGMSYLYGITGSTNIVDMQKVLTGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGATTPVTAFLGTISKIAGFLLIIRLFLMVFASVLIQGDMQSLYGHMSIYIAVLASITMIVGNVVALKQYNIKRLFAYSGIAHAGYLLVPLVALSPFTLDSMWFYMLAYMLMNIGAFAIIHGLILQNDKENITIFTGLYKKSPFAAIMMTIFILSLAGIPGTAGFIGKINIFLGALHVEPAHYVLASIMMGTTVVSFVYYFRILQQMFFRTGETEERIRLPLNIKVVMSLCAISIVILGIMPMIGYNFFYEYFPLMKDFFFLGNVVQ
>NZ_CP051858.1|WP_000998960.1|2382345_2383848_-|NADH-quinone-oxidoreductase-subunit-M
MNDLLLTFFIFSPLLGILLLVLTSKKELRTVRALGLFGTALPFGIAIVLACTYASGKSLSLFDEKVKWIKFGDFTAVDKRWFSIYYELGIDGLSLIMMVLTALLAMLAAIAAFSIKSNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFLEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVELKEILRSVSAGGELVIPSSLQLGVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGTFLALIQTDFRKVLAYSSISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDIMVLGGLAKSVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRATLQVTFGKKEWEAKSDIHGWEYVPVLLLIFCIIAIGVMPEILGDPLQNTLKTLGVK
>NZ_CP051858.1|WP_000568213.1|2383844_2385707_-|NADH-quinone-oxidoreductase-subunit-L
MIDYAWLIPLFPLVSFLLLIIFGKKIREGSSVLSIFFVFLSFILAVLVLIERFSEASVKHKWVWLRAGDVDISFGFEVTALGALMLFIVTLVSLLVHVYSKGYMKGDERLPTFYAYLGLFTFAMLGLVISTNLLQLYIFWELVGLGSFLLIGFYFFKEEAKAAAKKAFIMTRIGDVGLFIGMILIFWYAGSFEYDAIFRAIYTGALPPYMITITAILIFIGAMGKSGQFPLHTWLPDAMEGPTPVSALIHAATMVAAGVYLVATMFPLFSASAVAMQTVAIVGAFTAIFAASIGLVQTDIKRVLAYSTVSQLGYMMLALGSAGYVAGIFHLTTHAFFKALLFLAAGSVIHAVHTQNINKMGGLQKKMKVTGTLFLIGTLAISGVPLLSGFFSKDEILAATWMNGNYFLFVLAVIAAFLTAFYMFRLYFLVFTGEAKTKEDVHESPRVMKYPMIVLGVLAVVAGYINTPWFGTFLGDWLTKDVGFKVEEAHGPVWIMIVATLVSFAGIALAYFIYGKKSISREWAGGTGTSFYNLLKEKYYVDELYNMTVIPITKGIARVLRLFEVYVVEGIAVLIGSVVKGTSNLGSKLQNGNVQVYGTVTAVSLAVLVIILLYTGGDLR

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Crispr_ID: NZ_CP051858_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051858_3

3271664-3271739

Orphan

Consensus_repeat	Method
ATCATCATCATGGAGGACACAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051858_3

>merge|NZ_CP051858|3|3271664-3271739|CRISPRCasFinder
ATCATCATCATGGAGGACACAATCATGGTGGGCACAATCATAACGGCGGACATCATCACCATGGAGGACACAATCA

>NZ_CP051858|3|3|3271664-3271739|CRISPRCasFinder
ATCATCATCATGGAGGACACAATCA	TGGTGGGCACAATCATAACGGCGGAC
ATCATCACCATGGAGGACACAATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051858.1\|WP_003309076.1\|3284746_3284890_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051858.1\|WP_000193671.1\|3282227_3283730_-\|spore-germination-protein	unknown	unknown	gnl\|CDD\|377020
NZ_CP051858.1\|WP_000095913.1\|3264255_3265446_+\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
NZ_CP051858.1\|WP_000893348.1\|3272462_3274166_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP051858.1\|WP_001167972.1\|3262457_3263279_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP051858.1\|WP_000885973.1\|3263310_3264042_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP051858.1\|WP_000925213.1\|3260385_3261390_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP051858.1\|WP_001248844.1\|3266975_3268859_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226921
NZ_CP051858.1\|WP_000448446.1\|3274197_3275595_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129983
NZ_CP051858.1\|WP_000401661.1\|3283918_3284740_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|225213
NZ_CP051858.1\|WP_000743027.1\|3269883_3271413_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|171510
NZ_CP051858.1\|WP_000387173.1\|3285049_3286510_+\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NZ_CP051858.1\|WP_000185806.1\|3281140_3282247_-\|GerAB/ArcD/ProY-family-transporter	unknown	unknown	gnl\|CDD\|281794
NZ_CP051858.1\|WP_000513939.1\|3276900_3278328_+\|PTS-system-trehalose-specific-EIIBC-component	unknown	unknown	gnl\|CDD\|273916
NZ_CP051858.1\|WP_001189930.1\|3266515_3266938_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
NZ_CP051858.1\|WP_000656109.1\|3278341_3280003_+\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|274115
NZ_CP051858.1\|WP_000760052.1\|3261386_3262445_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP051858.1\|WP_000987242.1\|3276047_3276758_+\|trehalose-operon-repressor	unknown	unknown	gnl\|CDD\|274116
NZ_CP051858.1\|WP_000723120.1\|3265490_3266456_+\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|187580
NZ_CP051858.1\|WP_000892989.1\|3268862_3269756_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786

Protein	Function_ID	Function_description	E-value
NZ_CP051858.1\|WP_000193671.1\|3282227_3283730_-\|spore-germination-protein	gnl\|CDD\|377020	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein.	0
NZ_CP051858.1\|WP_000095913.1\|3264255_3265446_+\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP051858.1\|WP_000893348.1\|3272462_3274166_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.99317e-109
NZ_CP051858.1\|WP_001167972.1\|3262457_3263279_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	8.44295e-133
NZ_CP051858.1\|WP_000885973.1\|3263310_3264042_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.07831e-20
NZ_CP051858.1\|WP_000925213.1\|3260385_3261390_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.49512e-87
NZ_CP051858.1\|WP_001248844.1\|3266975_3268859_-\|VWA-domain-containing-protein	gnl\|CDD\|226921	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism].	1.90481e-97
NZ_CP051858.1\|WP_000448446.1\|3274197_3275595_-\|amino-acid-permease	gnl\|CDD\|129983	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. [Transport and binding proteins, Amino acids, peptides and amines].	1.33606e-97
NZ_CP051858.1\|WP_000401661.1\|3283918_3284740_+\|phosphotransferase	gnl\|CDD\|225213	COG2334, COG2334, Putative homoserine kinase type II (protein kinase fold) [General function prediction only].	2.62392e-28
NZ_CP051858.1\|WP_000743027.1\|3269883_3271413_-\|cardiolipin-synthase	gnl\|CDD\|171510	PRK12452, PRK12452, cardiolipin synthase.	0
NZ_CP051858.1\|WP_000387173.1\|3285049_3286510_+\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NZ_CP051858.1\|WP_000185806.1\|3281140_3282247_-\|GerAB/ArcD/ProY-family-transporter	gnl\|CDD\|281794	pfam03845, Spore_permease, Spore germination protein.	6.39068e-40
NZ_CP051858.1\|WP_000513939.1\|3276900_3278328_+\|PTS-system-trehalose-specific-EIIBC-component	gnl\|CDD\|273916	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component. This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.	0
NZ_CP051858.1\|WP_001189930.1\|3266515_3266938_+\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	1.7486e-24
NZ_CP051858.1\|WP_000656109.1\|3278341_3280003_+\|alpha,alpha-phosphotrehalase	gnl\|CDD\|274115	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.	0
NZ_CP051858.1\|WP_000760052.1\|3261386_3262445_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	8.98999e-88
NZ_CP051858.1\|WP_000987242.1\|3276047_3276758_+\|trehalose-operon-repressor	gnl\|CDD\|274116	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions].	1.60325e-130
NZ_CP051858.1\|WP_000723120.1\|3265490_3266456_+\|L-threonine-3-dehydrogenase	gnl\|CDD\|187580	cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs. This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP051858.1\|WP_000892989.1\|3268862_3269756_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	6.9487e-37

>NZ_CP051858.1|WP_000743027.1|3269883_3271413_-|cardiolipin-synthase
MKKPIVQLLLIFTIVSIVLFLLNTSYISLYTFVGALWSITIVGISFVIFIENRSPQSTLAWFLVLALLPIIGVLLYAIFGRSRWRRKKHLHRSEEQRKLFREILEGRRLELLLTVPLNERSIHLTEVIQKFGGGPAADKTTTKLLTNGDQTFSEILRAIEQAKHHIHIQYYIYKSDEIGTKVRDALIQKAKDGVIVRFLYDGLGSNTLRRRFLQPMKEAGIEIVEFDPIFSAWLLETVNYRNHRKIVIVDGEIGFTGGLNVGDEYLGRSKKFPVWRDSHLKIEGKALYKLQAIFLEDWLYASSGLNTYSWDQFMNRQYFPGKEISHAEGAVQIVASGPSSDDKSIRNTLLAVMGSAKKSIWIATPYFIPDQETLTLLRLSAIAGIDVRILYPGKSDSIISDQASQSYFTPLLKAGASIYSYKDGFMHAKIVLVDDTIATIGTANMDVRSFELNYEIISVLYESKTVHDIKRDFEKDFKHSTEIKWNSFQKRSIKKRILESFMRLISPLL
>NZ_CP051858.1|WP_000892989.1|3268862_3269756_-|MoxR-family-ATPase
MLEQFHIHSDLKQQLSTIHEKNKQEAGENAHLIGTKIYKASDNSIIEDAITALLLGKNILLKGPTGSGKTVLAETLSSLFQKPMHSINCSVDLDVEGILGYNTLQTKDGASEVSFVNGPLMKAMKNGHFLYIDEINMAKPETLPLLHGALDYRKMITNPFTQEVVYGDEEYRVIAAINEGYVGTSELNEALKNRFVIIEVPYIQGDTLKELLLAESKLNDVATIEKFVAFASDLMPLARDGRVSEEAASIRGIIDACDLGVYIPVMRAIERSIIAKLNDETEQMTVRELAESYFFEG
>NZ_CP051858.1|WP_001248844.1|3266975_3268859_-|VWA-domain-containing-protein
MRQIFSDKKIDASLFLQMENLMYALLKEDDAYLEYGYKAYYDEIEKKVVISHFWDDRKEEDTVIGLKSEVFLKALGNKHYSDMTLIRSYAIELQESPLKKFLTQLFVLLEDLRVEEIVKNLRPGTKHIFKRRKEMYRNYFGSQNEINRVRNYHGDRLFCLCYLSLTSDKYEMFNNEYFEQIEAILHETFQARNTEDIMYVVEKIRYRLEALLESDMLNNYFGHAPLYLSVLADEKNCRVEDLANDDTQLIDDDENKNKMDESFSTWHRENKNNENENFLRFELESGTKTNMMGDTARESEDGDQALGSVQGTSQKSTQSNFDGADTEEARASHASSQHDGAYGKYNVGASHTFKEARKANIDEKKDYQAIKSVVNKDVKELKKIIEKTIENKTNANNDKYYGRLRKKFLRIYTEKQPRMFYKKGQESQELDVAFQLLVDCSGSMYNKMEETKKSVVLFHEALKSLKIPHAISGFWEDASSAKPEDKPNVIHEVVNYKNSTLPNVGPEIMQLREEEDNRDGYIIRIVSEKLAKRPEKHKFLLVFTDGEPSALDYQQDGILDTHEAVKLARKSGMEVIGIFIEEGEAKEATYQLMKNIYNHHFLVANHAEDLRLKIKPLLKKLLLKTIE
>NZ_CP051858.1|WP_001189930.1|3266515_3266938_+|NUDIX-hydrolase
MQRVDVVYALIHDEETDKILMVHNAEQNVWSLPGGAVEKGEILEEALIREVKEETGLIATLGGLVAINEKFFEESGNHALFFTFRANVVKGELIAEDEGEISAIEWVDRTIANERFPYYDGGFESLLEVAIPYKFQPETK
>NZ_CP051858.1|WP_000723120.1|3265490_3266456_+|L-threonine-3-dehydrogenase
MKKILVTGSLGQIGSELVMKLRDVYGASNVIATDIRETDSEVVKSGPFETLDVTDGQKLHDIAKHNEVDTIIHLAALLSATAEKNPLFAWNLNMGGLVNALEAARELNCKFFTPSSIGAFGPSTPKDNTPQDTIQRPTTMYGVNKVAGELLCDYYHQKFGVDTRGVRFPGLISYVAPPGGGTTDYAVEIYYEAIKKGAYTSYIAEGTYMDMMYMPDALQAIISLMEADPSKLVHRNAFNITAMSFEPEQIAASIRKHIPTFTMDYAVDSARQTIADSWPNSIDATAAMKEWGFKAEYDLDKMTTDMLAKLKKKLTAELVMN
>NZ_CP051858.1|WP_000095913.1|3264255_3265446_+|glycine-C-acetyltransferase
MSSKTLAKFLEENLEDLKSKGLYNVIDPLESSNGPIITIGGKEYINLSSNNYLGLATDSRLQEAAIGAIHKYGVGAGAVRTINGTLDLHIKLEETIAKFKHTEAAIAYQSGFNCNMAAISAVMDKNDAILSDELNHASIIDGSRLSKAKIIVYKHSDMEDLRQKAIAAKESGLYNKLMVITDGVFSMDGDVAKLTEIVEIAEELDLMTYVDDAHGSGVLGKGAGTVKHFGLSDKVDFQIGTLSKAIGVIGGYVAGKQNLIDWLKVRSRPFLFSTALTPADAAACMRSIEILMESTELHDRLWENGRYLKQGLKELGFNIGESETPITPCIIGDEVLTQEFSKRLNEEGVYAKSIVFPTVAKGKGRVRNMPTAAHTKEMLDEAIRKYEKVGKEMGII
>NZ_CP051858.1|WP_000885973.1|3263310_3264042_-|class-I-SAM-dependent-methyltransferase
MAFTESDVYNNTAFFEQYMKRRYRENSPNESIEKPVFFQLIGHVQGKQILDLGCGDAKFGAELLEKGCYSYTGIEGSELMYEKAKNQLENKNGSVHFLNLKDYTYPSSTFDLVTSRLALHYIEHLDTIFQNVFQTLKTNGTFTFSVQHPVITSSFESLQTSGKRTSWLVDDYFKLGKRVEPWIDQEVIKYHRTTEEYFTLLQQAGFTITSLKEATPNPIYFQNEEEYKRRLRIPLFLLFSCTK
>NZ_CP051858.1|WP_001167972.1|3262457_3263279_+|ABC-transporter-ATP-binding-protein
MQKALETKRLTLSYGETSIIDELNLEIPKGEITIFIGSNGCGKSTLLRSLARLLKPTTGDILLDNQAIQSMQTKQIARQMAILPQGPQAPEGLTVLQLVKQGRYPYQTWLKQWSEKDEEMVQKALAATGMTEFAERDVHALSGGQRQRAWIAMTLAQDTDIILLDEPTTYLDMTHQIEVLDLLFELNETEQRTIVMVLHDLNLACRYADNIVAIQDKQIYAQGKPEEVVDEKLVRDVFRMECQISTDPLFGTPLCIPHGRGRRVVKEVAQAIR
>NZ_CP051858.1|WP_000760052.1|3261386_3262445_+|iron-ABC-transporter-permease
MKKYIPFRIGKGELSFLMYKRACLVLLSLLLVLIGLFFASAGMGDMKIAPYDVWQAITGNGDAMSNMVVNKFRMPRILIAILVGIALAVAGCILQGLVRNPLASPDIIGITGGASVAVVLFLALFSDKNNALTVSIHYMPLAAFAGATIVAVFVYLFAWQNDGLSPISLVLIGVGFWALTKAATTLFMLLAPIYQASQANVWITGTVYGSSWQNVMVLAPWVLILTVISFIAARHLNAQELGDDIAVGLGVPLTKSRVFMLLLSTALIGGAVAFAGGIGFVGLMAPHISRRLVGSLYGALLPVAAIVGAILVLAADLIGRTIFTPLEIPAGVFTSAIGAPYFIYLLYKSRNS
>NZ_CP051858.1|WP_000925213.1|3260385_3261390_+|iron-ABC-transporter-permease
MLLKTNRAKGIGLFVGIIAVVICIWGSIIFGYTNTSWKLALDAFFHFNGSNEHIIIQNVRLPRALIAASVGASLAIAGCLMQTLTKNPLASPDFIGLNSGAAFFIVVAIVIFSVTSLSAFTWIAFLGAAVAAVLVFASSSLGKEGTTPLKLTLAGVAISALFSSLTQGLLVLNEKALEEVLFWLAGSVQGRKLEILQSVFPYLLIGWIASLIMAGKVNTLMMGEDVAKGLGQRTILMKSFVLLIIVLLSGGSVAVAGPIGFIGIITPHFARFLVGVDHRWRVPYSGLLGAILLILADIAARYVIMPQEVPVGVMTAFIGAPFFIYIARKRGLSK
>NZ_CP051858.1|WP_000893348.1|3272462_3274166_+|EAL-domain-containing-protein
MLEQRGHALYDSSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHPKTFFQNLWKRILNGKVWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTEDGPIAPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPNYQEGLKLSVNLSIQQLMQKRFILSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLYYLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLQSMSCDYVQGFYYAKPLSVGELKEKLITDF
>NZ_CP051858.1|WP_000448446.1|3274197_3275595_-|amino-acid-permease
METKKWGLWVLTAFVIGNMVGGGVFMLPANLAQVSGPMGSTLAWSITGLGVFMIALVFGNLAIRKPELKAGPQSYAQAMFPSKKAGKVAGYSMAWGYWAANWAATASVIISFAGYLSTFFPVLQSKQILFSINGFSLELGKGLTFLVCSLMLWGIQYILSQNIDRAGNMNLLATIAKIIGFTMFIVITLFIFNASNFGDGQTFMNEAGQSISLGGQINSAAIATLWAFIGIESAVMLSNRAKSQRDVKKATIFGLIIALLIYMSITLLTMGALPQDALKESQKPLVDALNLAIGNKGAYIMALLALISLFGSTVGWIVVSSEVPYQAAKNGLFPKFFGKTNKKGSPSKSLLITNVMTQIFLFSTISGTVSEAYSFAIVVATLAYLIPYLVSTLYQFKLVITGETYDIMPGSRIKDGIITTLAFVYSIWVIKTGTADLKTFFLGIGLFVLGLILYPVLMKDSQKTD
>NZ_CP051858.1|WP_000987242.1|3276047_3276758_+|trehalose-operon-repressor
MMSKYEQIYTEISKSIDNKQLKEGCKIPSETELMKQYEASRGTVRKAVDLLQERGYVQKIHGKGVFVLKRKNIEFNFGGIVSFQEENERLGRHCITEVVEMDKEKATKEIAKLLNVKEKTEIDHIKRVRNIDGEKVILDINHFVSEFIPGLTKEIATASIYKYIEKELGLHISYSQRVIEVQPCTEDDRKYLDLNGTDYVVVVKNFTHLYDGSQFEYTESRHRLDIFHFSDVARRK
>NZ_CP051858.1|WP_000513939.1|3276900_3278328_+|PTS-system-trehalose-specific-EIIBC-component
MGKDYRKTAEEVLQYIGGKDNIEQAAHCVTRLRIALKDESKIDNDKLQSVSLVKGAFHNAGIFQVVIGPGDVDRVYAELITLAGMEESTVADVKDSGNQKLNPAQKFVKIFSDVFMPILPAIVTAGLLMGINNLLGAKDLFFDGKNLLDVYPNLGGLWDLINMMANTAFVFLPALVGWSATKRFGGSPILGIVMGLMLVHPALLNAWDYGKAATGLEGQKIEYFNILGLFQIEKVGYQGQILPVLVAAFVLSKVEIFLKKHVPNAIQLLVVPITTIVVTGVLALGIIGPVTRHIGDLLTVGLVGVYETVPVVGAVLFGALYAPLVITGMHHMFIAIDLQLIAQHGGTFIWPMIALSNIAQGSAALAMFWISKNQNDKSMASTSAISAYFGITEPAMFGVNLRNKFPFYAAIIGSAVAAIFITLNGVLAPAIGIGGLPAFISIIPKSIPMFIVGMIIAVVIPFTLTWLFAKRVKQK
>NZ_CP051858.1|WP_000656109.1|3278341_3280003_+|alpha,alpha-phosphotrehalase
MKDWHKSVVYQIYPKSFNSYYNKETGDIKGVTEKLDYLKELGVDYIWLTPIYQSPQNDNGYDVSDYYSIDPSYGTMEEFEELLAEAKVRNIEIMLDIVVNHSSTEHKWFKEAKEDKNSPYRNYYIWRDEKNNWQSKFGGSAWKYDEKTEQYYLHLFDETQADLNWENEQLREEVYDMMRFWLDKGVTGFRLDVINLISKDQCFLNDEGNTATSDGRKYYTDGPRVHEYLQEMNRKVFAGKDVITVGEMSSTTIDNCIKYSNPERNELSMTFSFHHLKVDYPNGDKWTKAEFDFIKLKEIMSNWQIEMQKGGGWNALFWCNHDQPRIVSRFGDDRKYRNESAKMLATAMHMLQGTPYIYQGEEIGMTNPKFESIEQYRDVESLNIYDIKREEGLSKEEIIGILKQKSRDNSRTPMQWNEEMNSGFTTSTPWISVAENFTEINVEKALEDKESVFYHYKKLIELRKTYDVITEGEYAILDKNDPKIWAYTRTTESEVLLVINNFYGEEITYSVPAHVQLDGMKQEVLLSNYKDASKDIAKLNLRPYESIVYRYTK
>NZ_CP051858.1|WP_000185806.1|3281140_3282247_-|GerAB/ArcD/ProY-family-transporter
MTNTQSKISLVQLTFFVIQCQIGVGILSLPNRLHPIAKGGGWISVLIAGLATQLIILLMWFLLRRFPDANMYEIACMMFGNKFGKLLGFSYVFYFTLIGMTVMLNACTVIKIWILQATPWYAILLLFTIACCYVAYNTFKVIVRFYVMASILILPMALLIGLGLSRADFSYIFPITEAGWWNIIKASKETITAMYGFEIFLIAFPKVNGTAVAKLKAISIANGFVTLFYAFTVWICFIVFSPKQVELIPEPVAYLLRSLHIGIVDRTDLIFIPIWMITVVASIASCYAAASIGIGHIFNLANHKKSVPIVGVISFSIALFIDTPEELKLIANFTDKFTYIFIIVLPFLFLLYSLLRNKKGAPYAQKNS
>NZ_CP051858.1|WP_000193671.1|3282227_3283730_-|spore-germination-protein
MTQQEEQQKSKNQKHMFPSLPENINYIENKLCHSDDIKKLDIPFQNGKGIILYIESLADPNLIHQLALEPLLTRSDLSLDKAFSTLNMKKETNLNYGVQLLLQGKSLYFHEHVESFCTFETALSLKRAITEPDNEGIVRGPHTGFVEDLATNLASIRKLIKSPNVVVKYFTLGEEMHTKVAITYIQNIANDDLVAEVKRRLEMIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRTAANLMEGRVAILSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLPAIYIATVAFHPDVLPLELVYTIKASLEQVPLPPIFEALLMELIFELLREAGIRLPSRVGQTIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAIASFLVPSNDMSSAVRILRFPLMVLAAIFGYVGISFGIIITFVHLCQLHSFHTPYLSPLAPMRIKDMKDSFVRFPIWSFWERPHDSKPKKMQRQHVTREDENGDKHAK
>NZ_CP051858.1|WP_000401661.1|3283918_3284740_+|phosphotransferase
MEIAVERVFTKEILRRAAKAFHVTVEEKPLGDFENYIFKAKGDNDEDYVLRLTHSSHRSKKEVEAELDFLRYVAEHGAKVAGPLNSTSQNLVEEIGAEDSTFFFASLFTYAKGEQVKGEGSPYWGDDYFEAWGKAIGQLHRLTMSYPKTDYRDTWEEDESGIVNELEDDQVKKIAAVLMDEIKALPVERETFGLMHGDIHPGNFHYDGKELTIFDFDDAAYNYFIHDLAMVLYYSILFTPWTAEEKTDFARKQLQVLRKGYEHEHRLADSWYE
>NZ_CP051858.1|WP_003309076.1|3284746_3284890_+|hypothetical-protein
MFLRLRDVGLYGTLQKKFKGKGMPDNFRELSEELYERIIKREAIVNI
>NZ_CP051858.1|WP_000387173.1|3285049_3286510_+|alanine:cation-symporter-family-protein
MEAFVNWLNNIVWSPALVYLCLGVGLYFSIRTRFLQVRHVGEMVKLTFQGEKSEAGVSSFQALALSLSGRVGTGNIAGVATAVAFGGPGAVFWMWAVAFLGAGSAYIESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQANSIAVSLETAFGINTTVSGVLLVVVLAIIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAFALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVFDASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTIMAYYYIAETNIAYLNRDKDRPWLSIVLKFVFLGAVFYGCIKTAATAWALGDIGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPQPLGIKNADFWEHEYGKDKKEEVS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP051858_3	3.1\|3271689\|26\|NZ_CP051858\|CRISPRCasFinder	3271689-3271714	26	NZ_CP045855	Agrobacterium sp. MA01 plasmid punnamed1, complete sequence	103187-103212	5	0.808
NZ_CP051858_2	2.1\|2373221\|31\|NZ_CP051858\|CRISPRCasFinder	2373221-2373251	31	JX238501	Bacillus phage phiAGATE, complete genome	124559-124589	8	0.742
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NZ_CP014851	Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence	100650-100683	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812210	Flavobacterium phage vB_FspS_hemulen9-1, complete genome	22854-22887	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812215	Flavobacterium phage vB_FspS_lillamy9-4, complete genome	22191-22224	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812216	Flavobacterium phage vB_FspS_lillamy9-5, complete genome	22191-22224	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NC_048835	Flavobacterium phage vB_FspS_lillamy9-1, complete genome	22191-22224	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812213	Flavobacterium phage vB_FspS_lillamy9-2, complete genome	22191-22224	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812230	Flavobacterium phage vB_FspS_sniff9-2, complete genome	21831-21864	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812209	Flavobacterium phage vB_FspS_hemulen6-2, complete genome	22983-23016	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812218	Flavobacterium phage vB_FspS_lillamy9-7, complete genome	21454-21487	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812233	Flavobacterium phage vB_FspS_snork9-1, complete genome	22007-22040	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812219	Flavobacterium phage vB_FspS_morran9-1, complete genome	22308-22341	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812217	Flavobacterium phage vB_FspS_lillamy9-6, complete genome	21930-21963	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NC_048840	Flavobacterium phage vB_FspS_snork6-1, complete genome	22137-22170	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NC_048839	Flavobacterium phage vB_FspS_sniff9-1, complete genome	22057-22090	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NC_048842	Flavobacterium phage vB_FspS_stinky9-1, complete genome	21673-21706	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812232	Flavobacterium phage vB_FspS_snork6-2, complete genome	21655-21688	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	MN812208	Flavobacterium phage vB_FspS_hemulen6-1, complete genome	22983-23016	8	0.765
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47181-47214	11	0.676
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47565-47598	11	0.676
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47949-47982	11	0.676
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	48333-48366	11	0.676
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	48717-48750	11	0.676
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	49101-49134	11	0.676
NZ_CP051858_2	2.2\|2373275\|34\|NZ_CP051858\|CRISPRCasFinder	2373275-2373308	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	49485-49518	11	0.676

1. spacer 3.1|3271689|26|NZ_CP051858|CRISPRCasFinder matches to NZ_CP045855 (Agrobacterium sp. MA01 plasmid punnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

tggtgggcacaatcataacggcggac	CRISPR spacer
atctgggcacaatcatagcggcggaa	Protospacer
   **************.*******

2. spacer 2.1|2373221|31|NZ_CP051858|CRISPRCasFinder matches to JX238501 (Bacillus phage phiAGATE, complete genome) position: , mismatch: 8, identity: 0.742

ttcttcttttttgtcactagttgaaccgctt	CRISPR spacer
ctaaccttttttgccactagttaaaccgccc	Protospacer
.*  .********.********.******..

3. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NZ_CP014851 (Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tttatcttcttttttattttctggtttattttcc	Protospacer
.**.****** ****************  * ..*

4. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812210 (Flavobacterium phage vB_FspS_hemulen9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

5. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812215 (Flavobacterium phage vB_FspS_lillamy9-4, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

6. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812216 (Flavobacterium phage vB_FspS_lillamy9-5, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

7. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NC_048835 (Flavobacterium phage vB_FspS_lillamy9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

8. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812213 (Flavobacterium phage vB_FspS_lillamy9-2, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

9. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812230 (Flavobacterium phage vB_FspS_sniff9-2, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

10. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812209 (Flavobacterium phage vB_FspS_hemulen6-2, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

11. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812218 (Flavobacterium phage vB_FspS_lillamy9-7, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

12. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812233 (Flavobacterium phage vB_FspS_snork9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

13. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812219 (Flavobacterium phage vB_FspS_morran9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

14. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812217 (Flavobacterium phage vB_FspS_lillamy9-6, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

15. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NC_048840 (Flavobacterium phage vB_FspS_snork6-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

16. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NC_048839 (Flavobacterium phage vB_FspS_sniff9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

17. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NC_048842 (Flavobacterium phage vB_FspS_stinky9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

18. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812232 (Flavobacterium phage vB_FspS_snork6-2, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

19. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to MN812208 (Flavobacterium phage vB_FspS_hemulen6-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

20. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

21. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

22. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

23. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

24. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

25. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

26. spacer 2.2|2373275|34|NZ_CP051858|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

841929 : 851186

Bacillus_phage(40.0%)

bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000413739.1\|841929_842550_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	8.2e-19	62.2
WP_000976234.1\|842640_843444_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_000031383.1\|843444_843987_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_001102628.1\|843979_844303_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_000392443.1\|844674_844905_-\|bacteriocin	bacteriocin biosynthesis protein	A0A1B1P7Q9	Bacillus_phage	1.7e-25	77.6
WP_001051376.1\|844966_845809_-	M23 family metallopeptidase	A0A218KCJ1	Bacillus_phage	1.4e-32	47.7
WP_033795297.1\|845932_846919_-	lysozyme family protein	A0A223LKM8	Bacillus_phage	5.8e-35	43.3
WP_000464432.1\|847156_847543_-	hypothetical protein	A0A288WG73	Bacillus_phage	5.4e-45	68.3
WP_000900737.1\|847517_847682_-	hypothetical protein	NA	NA	NA	NA
WP_000511422.1\|847951_848839_-	DnaD domain protein	A0A2H4J394	uncultured_Caudovirales_phage	1.0e-94	64.6
WP_001189066.1\|848991_849186_-	hypothetical protein	A0A2H4J4V8	uncultured_Caudovirales_phage	2.6e-16	72.6
WP_000531298.1\|849197_849956_-	phage regulatory protein	A0A2H4JBC7	uncultured_Caudovirales_phage	4.1e-97	70.2
WP_000283161.1\|850152_850365_-	hypothetical protein	A6M975	Geobacillus_virus	1.3e-11	63.0
WP_000708856.1\|850526_851186_+	helix-turn-helix domain-containing protein	A0A2H4J441	uncultured_Caudovirales_phage	8.7e-35	41.0

DBSCAN-SWA_2

905452 : 1024226

106

Bacillus_phage(47.06%)

holin,protease,integrase,capsid,terminase,coat,head,tail,tRNA,bacteriocin,portal

attL 979962:979978|attR 996319:996335

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000878483.1\|905452_905809_-\|holin	CidA/LrgA family holin-like protein	NA	NA	NA	NA
WP_000454959.1\|905842_907276_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_000006462.1\|907462_907654_-	hypothetical protein	NA	NA	NA	NA
WP_000008148.1\|908167_909883_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-09	47.2
WP_001244684.1\|910082_911063_-	phosphatidylinositol diacylglycerol-lyase	NA	NA	NA	NA
WP_000689209.1\|911242_913084_-	peptidase	NA	NA	NA	NA
WP_000771008.1\|913378_914176_+	LysM peptidoglycan-binding domain-containing protein	A0A172JHR8	Bacillus_phage	2.8e-35	39.4
WP_000272409.1\|914441_915779_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_000791034.1\|916283_918203_+	LTA synthase family protein	W6LM83	Streptococcus_phage	4.4e-95	36.8
WP_001235297.1\|918300_921084_-	dynamin family protein	NA	NA	NA	NA
WP_000461138.1\|921588_921774_+	hypothetical protein	NA	NA	NA	NA
WP_000516485.1\|922051_924016_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.5e-61	29.7
WP_000195994.1\|924024_926703_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	1.8e-33	24.5
WP_001288799.1\|926883_927426_-\|coat	outer spore coat protein CotE	NA	NA	NA	NA
WP_000870460.1\|927552_927984_-	YlbF family regulator	NA	NA	NA	NA
WP_001005392.1\|927987_929517_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_000190155.1\|929945_930812_-	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA
WP_000625417.1\|930798_932556_-	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA
WP_003309838.1\|932781_933741_-	membrane dipeptidase	NA	NA	NA	NA
WP_000404341.1\|933763_934024_-	stage V sporulation protein SpoVS	J9PTX7	Bacillus_phage	8.4e-10	43.8
WP_001221092.1\|934173_934968_-	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA
WP_000099770.1\|935126_936692_-	ribonuclease Y	NA	NA	NA	NA
WP_001283853.1\|937175_938207_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.2e-137	71.5
WP_000990684.1\|938351_939590_-	competence/damage-inducible protein A	NA	NA	NA	NA
WP_001052967.1\|939610_940189_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000137465.1\|940254_941169_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000574107.1\|941190_941976_-	DUF3388 domain-containing protein	NA	NA	NA	NA
WP_000114444.1\|942114_942363_-	DUF3243 domain-containing protein	NA	NA	NA	NA
WP_000759625.1\|942438_943152_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000411971.1\|943252_944539_-	insulinase family protein	A0A2H4UVM3	Bodo_saltans_virus	3.8e-10	28.4
WP_000772416.1\|944539_945814_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.6e-56	30.3
WP_000008857.1\|946023_946983_-	ABC transporter permease	NA	NA	NA	NA
WP_001085255.1\|946983_948042_-	ABC transporter permease	NA	NA	NA	NA
WP_000456929.1\|948034_949567_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-11	25.9
WP_000725767.1\|949684_950761_-	BMP family protein	A0A0A7DN02	Lactobacillus_phage	5.6e-47	33.6
WP_000114182.1\|950853_951579_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001118795.1\|952116_954498_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.0e-89	51.4
WP_000605020.1\|954710_954914_-	YlzJ-like family protein	NA	NA	NA	NA
WP_000139825.1\|954910_955660_-	translocation-enhancing protein TepA	NA	NA	NA	NA
WP_000823089.1\|955764_957435_-	ribonuclease J	NA	NA	NA	NA
WP_000564763.1\|958361_959240_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_000692456.1\|959251_960484_-	aspartate kinase	NA	NA	NA	NA
WP_000414846.1\|960507_961554_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_085960240.1\|961704_961941_-	dipicolinate synthase	NA	NA	NA	NA
WP_002000636.1\|962143_963850_+	hypothetical protein	NA	NA	NA	NA
WP_000050864.1\|963864_964353_+	hypothetical protein	NA	NA	NA	NA
WP_000722940.1\|965036_965543_+	hypothetical protein	NA	NA	NA	NA
WP_000540632.1\|965744_966554_-	N-acetylmuramoyl-L-alanine amidase	D2XR33	Bacillus_phage	2.0e-134	83.3
WP_001261076.1\|966553_966790_-\|bacteriocin	bacteriocin biosynthesis protein	A0A2H4JGN9	uncultured_Caudovirales_phage	1.7e-25	100.0
WP_001075307.1\|966820_967186_-	hypothetical protein	A0A0S2MVE0	Bacillus_phage	2.8e-43	69.7
WP_001260218.1\|967207_971527_-\|tail	phage tail protein	A0A0S2MVB4	Bacillus_phage	0.0e+00	62.6
WP_000094137.1\|971523_972993_-\|tail	phage tail family protein	A0A0S2MV63	Bacillus_phage	2.3e-229	78.3
WP_000415912.1\|976893_977256_-	hypothetical protein	A0A2H4JAG8	uncultured_Caudovirales_phage	2.4e-42	70.8
WP_001004907.1\|977260_977848_-\|tail	phage tail protein	A0A2H4JDV4	uncultured_Caudovirales_phage	5.1e-87	82.1
WP_000176454.1\|977848_978184_-	hypothetical protein	D2XR22	Bacillus_phage	2.0e-51	90.8
WP_000997535.1\|978180_978525_-	HK97 gp10 family phage protein	A0A2H4JAH8	uncultured_Caudovirales_phage	6.3e-45	79.6
WP_003310446.1\|978526_978877_-\|head	phage head closure protein	D2XR20	Bacillus_phage	2.1e-51	86.2
WP_001243202.1\|978878_979175_-	hypothetical protein	D2XR19	Bacillus_phage	2.3e-43	90.6
WP_000152777.1\|979187_980351_-\|capsid	phage major capsid protein	A0A2H4JH29	uncultured_Caudovirales_phage	2.7e-209	95.9
979962:979978	attL	NA	NA	NA	NA
WP_000216398.1\|980370_981144_-\|protease	Clp protease ClpP	R9TLM7	Paenibacillus_phage	7.0e-60	54.1
WP_043333521.1\|981127_982234_-\|portal	phage portal protein	A0A2H4JAJ1	uncultured_Caudovirales_phage	3.1e-186	89.9
WP_000635288.1\|982299_983955_-\|terminase	terminase large subunit	A0A2H4JI41	uncultured_Caudovirales_phage	6.1e-311	95.5
WP_000763336.1\|983951_984308_-	hypothetical protein	A0A2H4JBV9	uncultured_Caudovirales_phage	3.6e-59	100.0
WP_001209624.1\|984458_984794_-	HNH endonuclease	D2XR61	Bacillus_phage	4.7e-53	91.0
WP_000877970.1\|984759_985032_-	hypothetical protein	A0A1B1P7D2	Bacillus_phage	1.8e-07	47.8
WP_000778987.1\|985028_985250_-	hypothetical protein	B5LPQ8	Bacillus_virus	1.9e-23	75.7
WP_001099642.1\|985528_985969_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000434817.1\|987493_987694_+	cold-shock protein	Q9AZD3	Lactococcus_phage	6.3e-21	72.7
WP_001012125.1\|987816_988359_-\|integrase	site-specific integrase	W8CYP1	Bacillus_phage	8.6e-89	91.7
WP_000192854.1\|988358_988823_-	ArpU family transcriptional regulator	D2XR57	Bacillus_phage	1.1e-73	92.2
WP_000140896.1\|989078_989243_+	hypothetical protein	A0A288WGN0	Bacillus_phage	4.5e-09	53.7
WP_000032820.1\|990411_991728_+	collagen-like protein	A0A285PWR0	Cedratvirus	4.4e-38	62.6
WP_000512856.1\|992768_992960_-	DUF3954 domain-containing protein	D2XR48	Bacillus_phage	6.4e-15	63.5
WP_001126004.1\|993033_993396_-	hypothetical protein	D2XR47	Bacillus_phage	1.6e-54	88.3
WP_000926798.1\|993370_993559_-	hypothetical protein	D2XR45	Bacillus_phage	9.7e-16	85.5
WP_000063910.1\|993561_994884_-	replicative DNA helicase	D2XR44	Bacillus_phage	5.1e-236	95.0
WP_000312141.1\|994880_995831_-	DnaD domain protein	D2XR43	Bacillus_phage	7.7e-85	61.2
WP_000998369.1\|996110_996395_-	hypothetical protein	D2XR42	Bacillus_phage	1.9e-23	55.3
996319:996335	attR	NA	NA	NA	NA
WP_000782004.1\|996578_996878_+	hypothetical protein	NA	NA	NA	NA
WP_000354295.1\|996874_997090_-	hypothetical protein	A0A0S2GLC6	Bacillus_phage	1.0e-24	69.0
WP_000215309.1\|997273_997495_-	hypothetical protein	NA	NA	NA	NA
WP_000537277.1\|997508_998096_-	hypothetical protein	D2XR41	Bacillus_phage	2.2e-74	69.7
WP_001141265.1\|998186_998435_-	hypothetical protein	NA	NA	NA	NA
WP_001060851.1\|998469_998661_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000900757.1\|998834_999272_+	helix-turn-helix domain-containing protein	A0A2P1JU09	Anoxybacillus_phage	7.5e-35	55.2
WP_000351864.1\|999285_999720_+	ImmA/IrrE family metallo-endopeptidase	D2XR38	Bacillus_phage	5.1e-60	79.0
WP_001046154.1\|999875_1000679_+	hypothetical protein	NA	NA	NA	NA
WP_000844788.1\|1000951_1002499_+	recombinase family protein	I3VYZ3	Thermoanaerobacterium_phage	1.8e-144	54.0
WP_000954735.1\|1002953_1003856_-	dipicolinic acid synthetase subunit A	NA	NA	NA	NA
WP_001239759.1\|1004026_1004278_-	YlmC/YmxH family sporulation protein	NA	NA	NA	NA
WP_000593001.1\|1004413_1005655_-	insulinase family protein	G3MBJ8	Bacillus_virus	4.4e-56	34.5
WP_000868223.1\|1005742_1006642_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_000076743.1\|1006794_1008933_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_001229392.1\|1009093_1009363_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_000766703.1\|1009463_1010435_-	bifunctional riboflavin kinase/FAD synthetase	A0A1V0SD03	Indivirus	2.1e-05	31.8
WP_000399363.1\|1010478_1011402_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_000776437.1\|1011488_1011845_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_000634349.1\|1011860_1012142_-	DUF503 family protein	NA	NA	NA	NA
WP_000036346.1\|1012138_1014205_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.9e-19	25.9
WP_001286522.1\|1014209_1014521_-	YlxQ family RNA-binding protein	NA	NA	NA	NA
WP_000071123.1\|1014521_1014794_-	YlxR family protein	NA	NA	NA	NA
WP_000102611.1\|1014805_1015912_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_000359095.1\|1015929_1016400_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_000059996.1\|1016733_1021035_-	PolC-type DNA polymerase III	A0A0A8WJ41	Clostridium_phage	4.1e-24	39.6
WP_000814295.1\|1021159_1022860_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_001090241.1\|1022969_1024226_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_3

1588357 : 1645997

Klosneuvirus(22.22%)

tRNA,protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000125365.1\|1588357_1589497_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.1e-82	42.3
WP_000354035.1\|1589509_1590562_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_000138162.1\|1590581_1590782_-	DUF2905 domain-containing protein	NA	NA	NA	NA
WP_000344464.1\|1590778_1591780_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	6.8e-07	26.3
WP_000464512.1\|1591785_1592403_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA
WP_000823610.1\|1592591_1593536_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000871202.1\|1593547_1594078_-	BofC C-terminal domain-containing protein	NA	NA	NA	NA
WP_000874881.1\|1594559_1594940_+	hypothetical protein	NA	NA	NA	NA
WP_001093530.1\|1594973_1595621_-	YhcN/YlaJ family sporulation lipoprotein	NA	NA	NA	NA
WP_003261053.1\|1595799_1597878_-\|coat	spore coat assembly protein ExsA	NA	NA	NA	NA
WP_000025282.1\|1598104_1599211_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_001092241.1\|1599241_1600075_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_001138541.1\|1600094_1601624_-	L-aspartate oxidase	NA	NA	NA	NA
WP_000973781.1\|1601776_1602919_+	IscS subfamily cysteine desulfurase	A0A1X7QGF3	Faustovirus	8.5e-30	29.2
WP_000812273.1\|1602918_1603461_+	transcription repressor NadR	NA	NA	NA	NA
WP_000511662.1\|1603542_1604190_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_000796367.1\|1604381_1604852_+	hypothetical protein	NA	NA	NA	NA
WP_000621701.1\|1605029_1605881_-	prephenate dehydratase	NA	NA	NA	NA
WP_001026364.1\|1605977_1607888_-	ABC transporter permease	NA	NA	NA	NA
WP_001011408.1\|1607937_1609860_-	ABC transporter permease	NA	NA	NA	NA
WP_000114530.1\|1609834_1610611_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.6e-19	31.0
WP_000865417.1\|1610704_1611787_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_002082113.1\|1611776_1612484_-	response regulator transcription factor	NA	NA	NA	NA
WP_000497121.1\|1612672_1613959_-	GTPase ObgE	NA	NA	NA	NA
WP_001003585.1\|1613963_1614506_-	Spo0B domain-containing protein	NA	NA	NA	NA
WP_000944957.1\|1614569_1614860_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_002082112.1\|1614863_1615208_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_000270907.1\|1615219_1615528_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_000855475.1\|1615693_1617085_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_000599047.1\|1617152_1618013_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_000797477.1\|1618005_1618752_-	stage IV sporulation protein SpoIVFA	NA	NA	NA	NA
WP_000503309.1\|1618885_1619683_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_000391514.1\|1619685_1620372_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_000975762.1\|1620407_1620953_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_001135484.1\|1620967_1621819_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_000466736.1\|1621860_1622880_-	rod shape-determining protein MreB	NA	NA	NA	NA
WP_001013396.1\|1623037_1623715_-	DNA repair protein RadC	NA	NA	NA	NA
WP_000720491.1\|1623761_1624337_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_000360995.1\|1624569_1625520_-	hypothetical protein	NA	NA	NA	NA
WP_000582072.1\|1625684_1626986_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_000072243.1\|1627079_1629725_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	5.5e-165	43.0
WP_000350651.1\|1630208_1631234_-\|coat	spore coat protein YsxE	NA	NA	NA	NA
WP_003256548.1\|1631268_1632270_-	stage VI sporulation protein D	NA	NA	NA	NA
WP_000712938.1\|1632350_1633637_-	glutamate-1-semialdehyde 2,1-aminomutase	A0A1V0SKB7	Klosneuvirus	1.7e-05	34.1
WP_001087080.1\|1633636_1634626_-	porphobilinogen synthase	NA	NA	NA	NA
WP_000992324.1\|1634646_1635399_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_001226404.1\|1635401_1636331_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_000009002.1\|1636346_1637180_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_000547856.1\|1637197_1638532_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_000133913.1\|1638948_1639401_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000359773.1\|1639403_1639820_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_000869118.1\|1639854_1640451_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
WP_000097281.1\|1640447_1642778_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	7.3e-177	43.7
WP_000119171.1\|1642960_1644631_-\|protease	ATP-dependent protease LonB	E3T4F6	Cafeteria_roenbergensis_virus	8.7e-15	33.5
WP_000472289.1\|1644737_1645997_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.0e-148	66.3

DBSCAN-SWA_4

1693901 : 1701589

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000221121.1\|1693901_1694825_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-45	43.5
WP_000247674.1\|1694950_1695886_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.4e-24	26.6
WP_000018046.1\|1695887_1696580_-	response regulator transcription factor	B5LWA6	Feldmannia_species_virus	6.8e-06	26.9
WP_001293576.1\|1696750_1696924_+	hypothetical protein	NA	NA	NA	NA
WP_001014310.1\|1696924_1697119_+	YwbE family protein	NA	NA	NA	NA
WP_001255945.1\|1697158_1698358_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	6.1e-71	41.0
WP_000587818.1\|1698652_1698976_+	heme oxygenase	NA	NA	NA	NA
WP_002162479.1\|1699048_1699813_-	class B sortase	NA	NA	NA	NA
WP_000403765.1\|1699845_1700616_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.7e-13	28.6
WP_001036830.1\|1700605_1701589_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.2e-17	27.2

DBSCAN-SWA_5

2947478 : 2955854

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000625687.1\|2947478_2948786_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.1e-20	25.3
WP_001170545.1\|2948874_2949594_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	4.0e-49	44.3
WP_000278823.1\|2949586_2949841_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666782.1\|2949837_2950521_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_000055594.1\|2950504_2952724_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.3e-163	41.2
WP_000879034.1\|2952708_2954124_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.3e-55	35.0
WP_001262424.1\|2954229_2955270_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.5e-68	46.3
WP_000088579.1\|2955266_2955854_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.1e-28	37.4

DBSCAN-SWA_6

3294264 : 3302422

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114365429.1\|3294264_3295251_-	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	4.2e-17	29.4
WP_000085772.1\|3295326_3295848_+	dihydrofolate reductase	NA	NA	NA	NA
WP_000822548.1\|3296013_3297405_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.6e-33	29.8
WP_000565487.1\|3297416_3298094_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.9e-33	35.6
WP_000738865.1\|3298269_3299517_+	hypothetical protein	NA	NA	NA	NA
WP_000277057.1\|3299650_3300181_+	DUF4352 domain-containing protein	A0A0S2MVG4	Bacillus_phage	8.6e-17	34.3
WP_000831286.1\|3300193_3300538_+	DUF4064 domain-containing protein	A0A0S2MVJ2	Bacillus_phage	8.5e-42	78.1
WP_000487912.1\|3300970_3302422_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.7e-139	54.2

DBSCAN-SWA_7

4485549 : 4494404

Bacillus_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000755524.1\|4485549_4486842_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	2.9e-10	30.3
WP_001194308.1\|4486941_4487706_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000453881.1\|4487942_4489703_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-275	99.2
WP_000612415.1\|4489743_4490421_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.0e-123	99.6
WP_001231613.1\|4490417_4491491_+	HAMP domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	3.7e-192	99.7
WP_000818985.1\|4491718_4492438_+	3-ketoacyl-ACP reductase	W8CYX9	Bacillus_phage	5.9e-61	100.0
WP_002083265.1\|4493150_4493405_+	hypothetical protein	W8CYN0	Bacillus_phage	4.5e-40	100.0
WP_001258546.1\|4493534_4494404_+	aminoglycoside 6-adenylyltransferase	E4ZFP8	Streptococcus_phage	5.6e-66	44.6

DBSCAN-SWA_8

4680788 : 4687698

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000427801.1\|4680788_4681064_+	stage V sporulation protein S	J9PTX7	Bacillus_phage	2.9e-08	41.2
WP_000478848.1\|4681262_4681526_+	hypothetical protein	A0A218KBU4	Bacillus_phage	3.4e-06	38.9
WP_001012095.1\|4681557_4681731_+	hypothetical protein	NA	NA	NA	NA
WP_000541075.1\|4682172_4682520_-	YolD-like family protein	A0A2H4JEH6	uncultured_Caudovirales_phage	2.5e-09	27.1
WP_000109862.1\|4682706_4683780_+	tetratricopeptide repeat protein	A0A2H4J8G3	uncultured_Caudovirales_phage	6.9e-74	42.0
WP_000709202.1\|4683776_4683902_+	hypothetical protein	NA	NA	NA	NA
WP_000499713.1\|4684221_4685049_-	hypothetical protein	NA	NA	NA	NA
WP_000165966.1\|4685158_4685806_+	HD domain-containing protein	S4W232	Pandoravirus	2.5e-10	28.3
WP_000783172.1\|4685802_4687698_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2H4UUX5	Bodo_saltans_virus	2.8e-46	25.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP051859

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

41084 : 52061

Bacillus_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001031181.1\|41084_42701_+	hypothetical protein	A0A0K2FMB2	Brevibacillus_phage	1.4e-131	41.0
WP_000691718.1\|42812_43892_+	ATP-binding protein	A0A0E3D9S6	Bacillus_phage	2.9e-160	77.4
WP_131202515.1\|43956_44331_+	hypothetical protein	NA	NA	NA	NA
WP_001173852.1\|44399_45260_+	thymidylate synthase	A0A0H3V0R8	Geobacillus_virus	1.3e-75	47.7
WP_000624473.1\|45256_45775_+	dihydrofolate reductase	A0A0E3D9G3	Bacillus_phage	1.5e-21	40.4
WP_000945823.1\|45777_45987_+	hypothetical protein	NA	NA	NA	NA
WP_000487831.1\|46080_46971_+	DUF1071 domain-containing protein	A0A1B1P7F0	Bacillus_phage	1.8e-30	48.1
WP_003254307.1\|47100_47298_+	hypothetical protein	NA	NA	NA	NA
WP_000881565.1\|47447_49409_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	9.6e-106	36.4
WP_001023489.1\|49439_49922_+	dUTP diphosphatase	Q332E8	Clostridium_botulinum_C_phage	2.4e-26	43.0
WP_000583728.1\|49918_50533_+	dTMP kinase	A0A1V0QGB5	Shearwaterpox_virus	6.0e-14	29.9
WP_001068334.1\|50536_51016_+	hypothetical protein	NA	NA	NA	NA
WP_000156298.1\|51040_51319_+	hypothetical protein	NA	NA	NA	NA
WP_000548555.1\|51311_52061_+	hypothetical protein	A7KV01	Bacillus_phage	1.6e-16	40.7

DBSCAN-SWA_2

70038 : 105752

Bacillus_phage(60.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000180796.1\|70038_70854_+	phage repressor protein/antirepressor Ant	A0A2D1GQG9	Lysinibacillus_phage	2.0e-20	58.1
WP_003254024.1\|70929_71541_+	hypothetical protein	NA	NA	NA	NA
WP_003310322.1\|71635_71779_+	hypothetical protein	NA	NA	NA	NA
WP_003254025.1\|71784_72057_+	hypothetical protein	NA	NA	NA	NA
WP_001146641.1\|72082_72718_+	hypothetical protein	NA	NA	NA	NA
WP_000477626.1\|72730_73054_+	hypothetical protein	A0A1I9S626	Bacillus_phage	1.7e-20	61.9
WP_000642957.1\|73028_73262_+	hypothetical protein	NA	NA	NA	NA
WP_000500661.1\|73261_73516_+	hypothetical protein	A0A076G7F3	Bacillus_phage	2.1e-29	67.5
WP_001208820.1\|73858_74293_+	hypothetical protein	A0A127AXQ6	Bacillus_phage	1.1e-17	46.2
WP_000504037.1\|74333_74525_+	hypothetical protein	NA	NA	NA	NA
WP_000483063.1\|74635_74923_+	hypothetical protein	NA	NA	NA	NA
WP_001284343.1\|74984_75413_+	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	3.1e-17	38.1
WP_000342987.1\|75463_75673_+	hypothetical protein	NA	NA	NA	NA
WP_000687311.1\|75695_76523_+	metallophosphoesterase	O64184	Bacillus_phage	4.2e-119	66.9
WP_001053438.1\|76633_76825_+	hypothetical protein	NA	NA	NA	NA
WP_000186693.1\|76863_77289_-	hypothetical protein	NA	NA	NA	NA
WP_000161131.1\|77314_78118_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_000568325.1\|78362_78617_-	hypothetical protein	NA	NA	NA	NA
WP_000386129.1\|78953_79394_+	hypothetical protein	NA	NA	NA	NA
WP_001064689.1\|79514_80237_+	hypothetical protein	A7KUV4	Bacillus_phage	9.9e-16	33.3
WP_000499887.1\|80211_81327_+	hypothetical protein	A7XX66	Thermus_virus	9.3e-13	28.9
WP_003310329.1\|81353_82559_+	AAA family ATPase	A7KUV6	Bacillus_phage	1.9e-67	44.7
WP_000733263.1\|82576_82825_+	hypothetical protein	NA	NA	NA	NA
WP_000427813.1\|82827_83265_+	hypothetical protein	A7KV30	Bacillus_phage	2.3e-23	39.4
WP_000209660.1\|83286_83721_+	GatB/YqeY domain-containing protein	NA	NA	NA	NA
WP_000593824.1\|83775_84741_+	hypothetical protein	A0A173GBG1	Bacillus_phage	6.9e-57	46.1
WP_000220506.1\|84767_86303_+	nicotinate phosphoribosyltransferase	A0A218KC49	Bacillus_phage	4.0e-192	67.8
WP_014895378.1\|86410_87292_+	nucleotide excision repair endonuclease	A0A218KC00	Bacillus_phage	9.9e-18	41.7
WP_003254066.1\|87422_87884_+	hypothetical protein	A0A1I9S5V4	Bacillus_phage	3.4e-54	67.1
WP_001008937.1\|87880_88090_+	hypothetical protein	NA	NA	NA	NA
WP_000996769.1\|88105_88756_+	TerD family protein	S5M8H7	Bacillus_phage	1.4e-29	38.2
WP_000290289.1\|88807_89410_+	TerD family protein	A0A2I7QY15	Vibrio_phage	7.4e-25	40.6
WP_001207091.1\|89414_89642_+	hypothetical protein	NA	NA	NA	NA
WP_000429546.1\|89775_90525_+	hypothetical protein	S5MAL1	Bacillus_phage	1.6e-40	42.0
WP_003310334.1\|90544_91615_+	phosphoesterase	NA	NA	NA	NA
WP_000886924.1\|91634_92360_+	NAD-dependent protein deacylase	A0A068EPD4	Bacillus_phage	1.7e-31	32.5
WP_000260123.1\|92569_93091_+	hypothetical protein	G3MBS8	Bacillus_virus	3.0e-14	33.8
WP_000145790.1\|93176_94361_+	NupC family nucleoside transporter	NA	NA	NA	NA
WP_000394584.1\|94594_95491_+	S8 family peptidase	A0A127AWU5	Bacillus_phage	1.1e-61	46.6
WP_000013355.1\|95620_96259_+	sigma-70 region 4 domain-containing protein	Q0SPI3	Clostridium_phage	9.3e-10	35.9
WP_000393454.1\|96587_96974_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000469986.1\|96991_97270_+	hypothetical protein	NA	NA	NA	NA
WP_001235407.1\|97308_98406_-	tyrosine recombinase XerS	A0A166YH27	Gordonia_phage	2.0e-07	30.8
WP_000634706.1\|98590_98953_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	1.7e-29	51.3
WP_000019971.1\|98934_101019_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	G3MBF2	Bacillus_virus	2.3e-267	64.6
WP_000626116.1\|101037_102066_+	class 1b ribonucleoside-diphosphate reductase subunit beta	G3MBF3	Bacillus_virus	5.4e-108	59.6
WP_000404326.1\|102098_102350_+	thioredoxin family protein	NA	NA	NA	NA
WP_014895379.1\|102349_102532_+	hypothetical protein	NA	NA	NA	NA
WP_000450054.1\|102626_102779_+	hypothetical protein	NA	NA	NA	NA
WP_000386879.1\|102797_103103_+	hypothetical protein	NA	NA	NA	NA
WP_131202517.1\|103077_103386_+	hypothetical protein	A0A0S2SXU6	Bacillus_phage	5.5e-24	62.8
WP_000337749.1\|103387_103642_+	hypothetical protein	NA	NA	NA	NA
WP_000130747.1\|103638_104400_+	nucleotidyltransferase domain-containing protein	X2JMW4	Bacillus_phage	7.3e-86	62.2
WP_000107146.1\|104519_105752_+	WXG100 family type VII secretion target	A0A2H4J389	uncultured_Caudovirales_phage	2.1e-66	58.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP051858

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP051859

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection