CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP053305	Spiroplasma citri strain C5 plasmid pScpC5-1, complete sequence	1 crisprs	NA	1	0
NZ_CP053304	Spiroplasma citri strain C5 chromosome, complete genome	0 crisprs	cas4	0	12
NZ_CP053309	Spiroplasma citri strain C5 plasmid pScpC5-5, complete sequence	0 crisprs	NA	0	0
NZ_CP053306	Spiroplasma citri strain C5 plasmid pScpC5-2, complete sequence	0 crisprs	NA	0	0
NZ_CP053311	Spiroplasma citri strain C5 plasmid pScpC5-7, complete sequence	1 crisprs	NA	1	0
NZ_CP053307	Spiroplasma citri strain C5 plasmid pScpC5-3, complete sequence	0 crisprs	NA	0	1
NZ_CP053308	Spiroplasma citri strain C5 plasmid pScpC5-4, complete sequence	0 crisprs	NA	0	0
NZ_CP053310	Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053305_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053305_1

2657-2771

Orphan

Consensus_repeat	Method
AAATTAAAAAAATATTTTACTTCTCATAGCATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053305_1

>merge|NZ_CP053305|1|2657-2771|CRISPRCasFinder
AAATTAAAAAAATATTTTACTTCTCATAGCATTCCAAACAAGAACAAAGCAAAATATTAATTATAAAAAATTTATTTTCTTAAATTAAAAAAATATTTTACTTCTCATAGCATTC

>NZ_CP053305|1|1|2657-2771|CRISPRCasFinder
AAATTAAAAAAATATTTTACTTCTCATAGCATTC	CAAACAAGAACAAAGCAAAATATTAATTATAAAAAATTTATTTTCTT
AAATTAAAAAAATATTTTACTTCTCATAGCATTC

>NZ_CP053305.1|WP_171283845.1|1826_2282_-|hypothetical-protein
MAVNATNLKLNKEQELLMRQRANLARNKGINKGISKEKKKSRLKILITFLGTLLVCTGGFVGGYYGVQYSQNHSKNVANKITTKELGEITIPKNDKTPNINQILVALYGKNTSINIKDYAVKDIKDTSAVIYSAYMFDNSTTTVTYTVKNG
>NZ_CP053305.1|WP_171283844.1|816_1542_-|hypothetical-protein
MFKWKLKNNKGVDIPLDTDNLNSQNETEVNNNDLYVIENKNNAEKTLKLSQKSNKTLYFGLGILASNLILLLVVFYVRLWLLFPIAILFSSFSLLFIFDYLVNSRKETELDRWYFRNKWIIILNRISVMFYPLTIFFYVFGILFSNKEIIFFFKEYNYTFGNNILFLTLLSVLIVVNITVKILIYFFYKFDVPHNELNNQTYLLNKLNTVKKAMNIFTICWYVLILLIFIVLILLIKKIKK
>NZ_CP053305.1|WP_164058678.1|3423_3693_-|hypothetical-protein
MAERKSIFSQAKITSVGESISETLLNNENENKLNDVNNFEIKNIKLKKNSIKKHINLTLKEDVIIKMKDVAKKNNMSVSALLEEVIEQL
>NZ_CP053305.1|WP_171283846.1|3695_4472_-|AAA-family-ATPase
MKIITVGALKGGVGXTNVTFNLSCFLSIEXKKKRILLIDLDPQGNLTQCFKLDPPNPVAMDIFLEQDADIKNLIFKTGFEKINIIPTNIKMANLEIKLFNELQRESKLKNYIEKNISFLEKKYDYILIDTNPSLNVTNINAYSVANSIILISDNSIHSLRAIDVIGNMWETISKKLKIENNIKAIILNNFDSYSISKDFKFELEQLPSXKKILIKQEIKKKQVFKASEITGIPVVKTLKKDENPYFNIVDELKQKGVI
>NZ_CP053305.1|WP_171283847.1|5260_5884_-|hypothetical-protein
MQELLIQNATQAFNQLNPNKDISNIFTSKKNVXKKNYTEKSNMVRFGTIYISSSKKFCHLDKNKENYLIGIKPHYTYNVYDAEXKNWKEKITGKELMKKYNLVGFHYLTVEQQRFKNMQKANPFFLQFKNVKESMEWHRQQAKEQREQLNALLMNRKKNTDTKVSENDVISKFNSDYENKKYQSTEDKKRTVDINHLLNDLDGPMFN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053305_1	1.1\|2691\|47\|NZ_CP053305\|CRISPRCasFinder	2691-2737	47	NC_007386	Spiroplasma citri plasmid pSciA strain GII3	3570-3616	0	1.0
NZ_CP053305_1	1.1\|2691\|47\|NZ_CP053305\|CRISPRCasFinder	2691-2737	47	NZ_CP047436	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-8	1737-1783	0	1.0
NZ_CP053305_1	1.1\|2691\|47\|NZ_CP053305\|CRISPRCasFinder	2691-2737	47	NZ_CP053305	Spiroplasma citri strain C5 plasmid pScpC5-1, complete sequence	2691-2737	0	1.0
NZ_CP053305_1	1.1\|2691\|47\|NZ_CP053305\|CRISPRCasFinder	2691-2737	47	NZ_CP047443	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-6, complete sequence	4542-4588	2	0.957
NZ_CP053305_1	1.1\|2691\|47\|NZ_CP053305\|CRISPRCasFinder	2691-2737	47	NZ_CP047442	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-5, complete sequence	4528-4574	2	0.957

1. spacer 1.1|2691|47|NZ_CP053305|CRISPRCasFinder matches to NC_007386 (Spiroplasma citri plasmid pSciA strain GII3) position: , mismatch: 0, identity: 1.0

caaacaagaacaaagcaaaatattaattataaaaaatttattttctt	CRISPR spacer
caaacaagaacaaagcaaaatattaattataaaaaatttattttctt	Protospacer
***********************************************

2. spacer 1.1|2691|47|NZ_CP053305|CRISPRCasFinder matches to NZ_CP047436 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-8) position: , mismatch: 0, identity: 1.0

caaacaagaacaaagcaaaatattaattataaaaaatttattttctt	CRISPR spacer
caaacaagaacaaagcaaaatattaattataaaaaatttattttctt	Protospacer
***********************************************

3. spacer 1.1|2691|47|NZ_CP053305|CRISPRCasFinder matches to NZ_CP053305 (Spiroplasma citri strain C5 plasmid pScpC5-1, complete sequence) position: , mismatch: 0, identity: 1.0

caaacaagaacaaagcaaaatattaattataaaaaatttattttctt	CRISPR spacer
caaacaagaacaaagcaaaatattaattataaaaaatttattttctt	Protospacer
***********************************************

4. spacer 1.1|2691|47|NZ_CP053305|CRISPRCasFinder matches to NZ_CP047443 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-6, complete sequence) position: , mismatch: 2, identity: 0.957

caaacaagaacaaagcaaaatattaattataaaaaatttattttctt-	CRISPR spacer
ccaacaagaacaaagcaaaatattaattataaaaaa-ttattttctta	Protospacer
* ********************************** **********

5. spacer 1.1|2691|47|NZ_CP053305|CRISPRCasFinder matches to NZ_CP047442 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-5, complete sequence) position: , mismatch: 2, identity: 0.957

caaacaagaac-aaagcaaaatattaattataaaaaatttattttctt	CRISPR spacer
-caacaagaacaaaagcaaaatattaattataaaaaatttattttctt	Protospacer
  ********* ************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1211 : 8656

Spiroplasma_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171283859.1\|1211_2228_-	plectrovirus svts2 rep protein	Q3ZVF7	Spiroplasma_phage	4.2e-137	75.7
WP_171283860.1\|2353_3619_-	AAA family ATPase	NA	NA	NA	NA
WP_147077490.1\|3834_5238_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	1.6e-134	65.6
WP_171283861.1\|5250_5487_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	4.8e-28	88.3
WP_147077495.1\|5486_5780_-	hypothetical protein	Q9QTI1	Spiroplasma_phage	2.2e-30	94.4
WP_147077499.1\|6787_6997_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	7.5e-09	56.5
WP_167693728.1\|6996_7155_-	hypothetical protein	Q9QTH0	Spiroplasma_phage	2.3e-18	96.2
WP_147077501.1\|7217_7421_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	3.7e-13	83.1
WP_171283862.1\|7552_7738_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	3.5e-18	83.6
WP_147077505.1\|7737_7965_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	1.3e-27	88.9
WP_155522138.1\|8166_8304_-	hypothetical protein	NA	NA	NA	NA
WP_147077506.1\|8305_8656_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	1.1e-15	39.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP053311

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053311_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053311_1

37349-37452

Orphan

Consensus_repeat	Method
ATATAAATATGATAAATAATATTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053311_1

>merge|NZ_CP053311|1|37349-37452|CRISPRCasFinder
ATATAAATATGATAAATAATATTTATCATATTTATATTTTTTAAAAAACCACTTGAAAATATGGGTTTTTATATTATCATATAAATATGATAAATAATATTTAT

>NZ_CP053311|1|1|37349-37452|CRISPRCasFinder
ATATAAATATGATAAATAATATTTAT	CATATTTATATTTTTTAAAAAACCACTTGAAAATATGGGTTTTTATATTATC
ATATAAATATGATAAATAATATTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053311.1\|WP_171283908.1\|31638_33093_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053311.1\|WP_171283916.1\|39605_40382_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP053311.1\|WP_171283915.1\|37710_38154_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP053311.1\|WP_171283909.1\|33064_33730_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271322
NZ_CP053311.1\|WP_164058538.1\|35153_35798_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053311.1\|WP_171283912.1\|36336_36933_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053311.1\|WP_171283906.1\|28055_30554_-\|adhesin	unknown	unknown	gnl\|CDD\|271322
NZ_CP053311.1\|WP_171283910.1\|33660_34080_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053311.1\|WP_171283907.1\|31321_31474_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053311.1\|WP_171283890.1\|30851_31319_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053311.1\|WP_171283914.1\|37481_37724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053311.1\|WP_171283913.1\|36923_37076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053311.1\|WP_171283911.1\|34789_34966_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP053311.1\|WP_171283915.1\|37710_38154_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.35935e-24
NZ_CP053311.1\|WP_171283909.1\|33064_33730_-\|hypothetical-protein	gnl\|CDD\|271322	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD. PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	3.60549e-12
NZ_CP053311.1\|WP_171283906.1\|28055_30554_-\|adhesin	gnl\|CDD\|271322	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD. PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	5.48496e-17
NZ_CP053311.1\|WP_171283916.1\|39605_40382_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	9.81994e-28

>NZ_CP053311.1|WP_171283913.1|36923_37076_-|hypothetical-protein
MKKLLSLVSVLTISGTAIQTTIAASPYQKEQEKEYYXKIQLIMNXFSSWT
>NZ_CP053311.1|WP_171283912.1|36336_36933_-|hypothetical-protein
MNLIKYFLPFQKKRWNEIKQLYHDIYIKNKKNIKYQKKTFNINFIDILNNGVWQDWRLNSNSYNAISEKIIDNFDLINNIIEKTKQDYYQLNTNDEKSYFSFFPSTKGVPYSYITEISNQINKVNNYLNWNNLNIVVKGGIIGAVICGSILIIFFSSAAAFFGLANNIRFMASGIVNNAKIGILIGYIFGSGIAWIIN
>NZ_CP053311.1|WP_164058538.1|35153_35798_-|hypothetical-protein
MKKLLSLVGTGILTTSGIAPLMAMTPGFINTIEENNIIKYYQSNGVFESNILEVDSEKQVFLMNFDLTNILGITTREELINNFDLINFKRNYSENGILMSFNIKSYNDFLLSNEYVLENINVNNFSNSNSISEERNLHLENAWGSANIRLYLEVNLNEEQINTTEGNSNNNHLNLQILIRAELENFEIRRTYGGLINRLQIMVDSSNKIWFYKK
>NZ_CP053311.1|WP_171283911.1|34789_34966_-|hypothetical-protein
MLTIPLAINLILLANPKNAAADEKKIINIEPQITAPAIPELNKIIALLSFFLISVIYE
>NZ_CP053311.1|WP_171283910.1|33660_34080_-|hypothetical-protein
MKKLLSILTISTLTASIPAPLLANTPATRTLTSNSNNDYLPIKEFKNINVSSLKMTIDSKDNIYIGTSNDVFVLKHGETTATKLDGIITNAIKYSVNSLGVDSKDNIYFLNLMVRISCLLVQQPQLKLMVSAMAYVVQQ
>NZ_CP053311.1|WP_171283909.1|33064_33730_-|hypothetical-protein
MSAGATTATKIDGISNGICCTTIDSKDNIYIGTDNGAYKLSTGSNTPTKINGINERILSIEIDNNNNVYFGADTGVYKLSAGATTPTKINGINDHVKIIAADSKGNIYFGTLNCVFVLKQGETTATKIDGIDGYVATIGVDSENNIYIGTDNGVFVLKQGSDTPTKINGIQTFISMADFKFDKNNKIYFGTYNGAFVLKHGETTATKIDGTSYDIQSIYNR
>NZ_CP053311.1|WP_171283908.1|31638_33093_-|hypothetical-protein
MTYNLYIIDSNDNIYFGTIRGTTNILQTVLSWAKTQSQFALVDSTKTQTWTRGDLLSVDGELNIDIANPNIDKIIFDNVEQPQTSKQWHINVKPETTACDHNLQVTFTLDGKQYTSEITVSMQAKINPPTPSKQENLSELIKTTDLGNIVDNNDDTIFNAVNQKNSNVIDDFSQIEITKKDNNSATLTAKKYSKSYADSVDVTYNVVSATTVDLKIDVTSSASGIQIDSDYLAQLDSSKMTNKVDTFYYSNGKSTIKIKQPSTGNFITGIVYGCDEKWNKTSQSNNIDPTTGLEIDKGQYGSVDGRYLIELQHKDLPTHTKTIYLQISEKQKIEHYWDTPNGKKFEEWAEDNGEKNIRGYGASQLNNLFEISAIWKQSLKHLDLKLDNFVVDNIKNVSQDEIDTYKTKMLASVKEQVENYASGVVENTGYVININNLVAGDWTTSKDVKVQAVSGSTKLLSFDSKTIPVEQKRTSNPSNINTRQ
>NZ_CP053311.1|WP_171283907.1|31321_31474_-|hypothetical-protein
MMTLLTTSGVNDLLNKILLPIYHLPAKITFNAAQRTTAKQAYEELIKEIK
>NZ_CP053311.1|WP_171283890.1|30851_31319_-|hypothetical-protein
MKIDENICLISHCEETKLLVDRMTLFCVEHSKRFFAFWSRYEVDSELDNMLEIDEEFQKEFFTDMVYDFCYEDIEEWKKINTPPIKNKQXKEKKEKQKTKVDKITMKKVDNKDTINHNLMIVDIDLQKCLNCSFTIQKVDDEWFTINTGDKNCQK
>NZ_CP053311.1|WP_171283906.1|28055_30554_-|adhesin
MKKLLSILTISTLTASIPAPLLAAVPLTNTLTSNSNSAYLPVKQINGVNDKVQSITVDIKNNVYFGTNNGAYKLSAGSDTPTKINGINNIVTAIDVDSKDNIYFGTNNGAYKLSAGETNVTSISPLPFFVQSITVDSKNNVYFGTNNGAYKLSAGSDTPTKINGIKGGFVSSSFDSENNIYFGKFDGLYKLSAGSDTPTKINGIDDSVYSISVDSKDNIYIGTDNGAYKLSAGSDTPTKINGINNIVTAIDVDSKDNIYFGKFDGLYKLSAGSETPTKINGISGQINSLVIDKTKYLFCGTNNGAYLIHSALTSLDWTNQQSQFNLVDSTKAMTWTRPDLLSVDGELNIDIANPNIDKVIFDNVEQPQTSKHWKINVKPETTARDHNLQVTFTLDGKQYTSEITVSMQAKINPAPPSKQENLSELIKTTDLGNIVDNNDDTIFSAVNQKKSQXVIDDFSQIEITKKDNNSATLTAKKDSKSYAGSVDVKYNVVSATVVDLKIDVTPTSLTATVIKDYLFQIDTSNITNPVNTFYYASSESIITMDKPTPSSVITGVVYGCDDKWNKTSQSNNIDSTNGIKLDGSQLATINGKYVVELSDNLGHTNNIYLQIAQDKKITNYFDTDNGKQFEIWAKANGYDNIRGYSASQLNNLFADSKNWQQLASDSQLASAVADRVKTSGKLSSTASLTKEQVVEQLKTQIPSDIKIDKVNTSNYEKDKVSFVLNQSEFKPNDKVNIAVKYNNATSEQFTLQIKDSNTPDNXKKDGDSKLWIIGVVVGVLVVLGLVYLLFKKFVFDKYFLPKINKRRHDKLVEKVRKEEAEKGDKNNKGGDE
>NZ_CP053311.1|WP_171283914.1|37481_37724_+|hypothetical-protein
MPIIPKKNINILDKTKNTVSFNKELNSSKQVKLNSMTCDIDLINKFNELATKRKWNKTALMNEILRDYFDRLENNKNEND
>NZ_CP053311.1|WP_171283915.1|37710_38154_+|AAA-family-ATPase
MKMISFCNKKGGVGKTTLCKNVAYKFALENKKVLVIDLDTQATISFLMQNENIDMSKSLHKIIASDCGMNINKVIQPTKYKNIDIIVGGETLKKSLIVMRELYDNDNFYLIGIKIYQSNQETFDGYDYVLIDXSPNNRWFKFKLTNI
>NZ_CP053311.1|WP_171283916.1|39605_40382_-|ParA-family-protein
MKMISFCNXKKGGVGKTTLCKNVAYKFALENKKVLVIDLDTQATISFLMQNENIDMSKSLHKIIASDCGMNINKVIQPTKYKNIDIVVGGETLKKSLIVMRELYDNDNFYLIGIKIYQSNQETFDGYDYVLIDYPPTTDDLSLNWLIFSDLIVIPTNNGSGSYKGILDLNNNLDLILNKLKMFKPQLKILFNDITETENKNKFEKWLKEINLYDNLLTIFIKHSENFTTSENDFNSIWENPYYWRQKQAYEELIKEIK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053311_1	1.1\|37375\|52\|NZ_CP053311\|CRISPRCasFinder	37375-37426	52	NZ_CP053311	Spiroplasma citri strain C5 plasmid pScpC5-7, complete sequence	37375-37426	0	1.0
NZ_CP053311_1	1.1\|37375\|52\|NZ_CP053311\|CRISPRCasFinder	37375-37426	52	NZ_CP053311	Spiroplasma citri strain C5 plasmid pScpC5-7, complete sequence	275-326	1	0.981
NZ_CP053311_1	1.1\|37375\|52\|NZ_CP053311\|CRISPRCasFinder	37375-37426	52	NZ_CP042473	Spiroplasma citri strain CC-2 plasmid pScpCC2-1, complete sequence	28256-28307	1	0.981

1. spacer 1.1|37375|52|NZ_CP053311|CRISPRCasFinder matches to NZ_CP053311 (Spiroplasma citri strain C5 plasmid pScpC5-7, complete sequence) position: , mismatch: 0, identity: 1.0

catatttatattttttaaaaaaccacttgaaaatatgggtttttatattatc	CRISPR spacer
catatttatattttttaaaaaaccacttgaaaatatgggtttttatattatc	Protospacer
****************************************************

2. spacer 1.1|37375|52|NZ_CP053311|CRISPRCasFinder matches to NZ_CP053311 (Spiroplasma citri strain C5 plasmid pScpC5-7, complete sequence) position: , mismatch: 1, identity: 0.981

catatttata-ttttttaaaaaaccacttgaaaatatgggtttttatattatc	CRISPR spacer
-atatttatatttttttaaaaaaccacttgaaaatatgggtttttatattatc	Protospacer
 ********* ******************************************

3. spacer 1.1|37375|52|NZ_CP053311|CRISPRCasFinder matches to NZ_CP042473 (Spiroplasma citri strain CC-2 plasmid pScpCC2-1, complete sequence) position: , mismatch: 1, identity: 0.981

catatttata-ttttttaaaaaaccacttgaaaatatgggtttttatattatc	CRISPR spacer
-atatttatatttttttaaaaaaccacttgaaaatatgggtttttatattatc	Protospacer
 ********* ******************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP053304

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

107292 : 113342

Spiroplasma_virus(85.71%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071890527.1\|107292_107442_+	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_071890530.1\|107441_107693_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.2e-31	85.5
WP_147076649.1\|108642_109002_+	hypothetical protein	NA	NA	NA	NA
WP_071890537.1\|108985_109435_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.0e-71	91.3
WP_071890543.1\|109588_109792_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_015979226.1\|110797_111202_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_015967964.1\|111201_111438_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_147076654.1\|112035_112317_-	lipoprotein	NA	NA	NA	NA
WP_171283325.1\|112433_113342_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	1.2e-13	27.7

DBSCAN-SWA_2

484911 : 493081

Staphylococcus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171283821.1\|484911_485784_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	2.5e-90	53.0
WP_071937085.1\|485783_486266_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	1.6e-22	37.1
WP_171283452.1\|486267_487056_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_071937087.1\|487080_488391_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.0e-107	49.2
WP_171283453.1\|488492_489260_+	segregation/condensation protein A	NA	NA	NA	NA
WP_171283454.1\|489265_489817_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.2e-14	31.4
WP_171283455.1\|489816_490620_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_004028620.1\|490570_491179_+	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	8.9e-18	35.1
WP_171283456.1\|491282_492482_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.2e-29	34.1
WP_071937091.1\|492517_493081_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	5.5e-22	38.6

DBSCAN-SWA_3

744943 : 752764

Spiroplasma_virus(88.89%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015979229.1\|744943_745093_+	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_015979230.1\|745092_745344_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979231.1\|745767_746007_+	hypothetical protein	NA	NA	NA	NA
WP_071890535.1\|746272_746632_+	hypothetical protein	NA	NA	NA	NA
WP_071937346.1\|746615_747065_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.9e-71	90.6
WP_071890543.1\|747217_747421_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_171283546.1\|747420_748437_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	4.6e-168	89.1
WP_071937327.1\|748429_748807_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_015967964.1\|748806_749043_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937348.1\|749054_751214_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	83.3
WP_071936912.1\|751789_752764_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-28	31.5

DBSCAN-SWA_4

894252 : 901993

Spiroplasma_virus(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155522121.1\|894252_894390_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.4e-16	95.6
WP_071937463.1\|894671_894908_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	94.9
WP_071937464.1\|894919_895117_+	hypothetical protein	NA	NA	NA	NA
WP_071937465.1\|895880_896096_-	YneF family protein	NA	NA	NA	NA
WP_171283585.1\|896641_896821_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.2e-11	73.3
WP_071937359.1\|896789_897041_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	89.2
WP_084566886.1\|898122_898563_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	4.2e-70	88.4
WP_071937469.1\|898715_898919_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_015979226.1\|899924_900329_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_071937470.1\|900328_900565_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	94.9
WP_147077292.1\|901753_901993_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	8.3e-28	89.7

DBSCAN-SWA_5

943823 : 957773

Spiroplasma_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071890543.1\|943823_944027_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937346.1\|944179_944629_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.9e-71	90.6
WP_071890535.1\|944612_944972_-	hypothetical protein	NA	NA	NA	NA
WP_015979231.1\|945237_945477_-	hypothetical protein	NA	NA	NA	NA
WP_015979230.1\|945899_946151_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979229.1\|946150_946300_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_155522075.1\|946409_946559_-	hypothetical protein	NA	NA	NA	NA
WP_171283601.1\|946545_947013_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	1.6e-19	45.7
WP_071937484.1\|949180_949417_-	hypothetical protein	A8RHK0	Spiroplasma_virus	2.4e-32	97.4
WP_071937327.1\|949416_949794_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_147077322.1\|950800_951004_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	1.3e-29	94.0
WP_071937485.1\|951142_951514_-	hypothetical protein	NA	NA	NA	NA
WP_147077324.1\|951515_951953_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	4.7e-69	91.0
WP_071937487.1\|951945_952281_-	hypothetical protein	NA	NA	NA	NA
WP_071937488.1\|952273_952633_-	hypothetical protein	NA	NA	NA	NA
WP_071938058.1\|952996_953188_-	hypothetical protein	A8RHI2	Spiroplasma_virus	3.7e-23	88.9
WP_071937491.1\|953724_954018_-	recombinase RecT	A0A2H4JCY8	uncultured_Caudovirales_phage	7.3e-10	44.6
WP_171283602.1\|954138_954297_-	hypothetical protein	NA	NA	NA	NA
WP_171283830.1\|954418_954931_-	hypothetical protein	A0A290GJW3	Caldibacillus_phage	5.9e-23	38.1
WP_071937494.1\|955021_955504_-	hypothetical protein	NA	NA	NA	NA
WP_071937495.1\|955773_956358_-	hypothetical protein	NA	NA	NA	NA
WP_155522124.1\|956530_956689_-	hypothetical protein	NA	NA	NA	NA
WP_164023995.1\|956820_957198_-	HNH endonuclease	A0A0K2CYS9	Paenibacillus_phage	5.3e-05	29.5
WP_171283603.1\|957178_957625_-	recombinase RecT	A0A0A7RW37	Clostridium_phage	6.3e-13	46.2
WP_171283604.1\|957578_957773_-	recombinase RecT	A0A0B5D0I3	Listeria_phage	7.7e-08	52.9

DBSCAN-SWA_6

1078446 : 1086248

Lactobacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171283648.1\|1078446_1078884_+	single-stranded DNA-binding protein	A7DYE1	Streptococcus_phage	3.7e-10	37.6
WP_071937587.1\|1078874_1079117_+	hypothetical protein	NA	NA	NA	NA
WP_171283649.1\|1079237_1080092_+	recombinase RecT	A0A0B5D0I3	Listeria_phage	1.3e-38	43.7
WP_164024015.1\|1080072_1080450_+	HNH endonuclease	A0A1B0YEC6	Lactobacillus_phage	1.6e-12	42.6
WP_155522132.1\|1080433_1080577_+	hypothetical protein	NA	NA	NA	NA
WP_071937570.1\|1080595_1080775_+	hypothetical protein	NA	NA	NA	NA
WP_171283650.1\|1081143_1083534_+	N-6 DNA methylase	A0A1W6JNK1	Staphylococcus_phage	9.1e-66	34.6
WP_171283651.1\|1084036_1084243_+	hypothetical protein	NA	NA	NA	NA
WP_071937591.1\|1084541_1084934_+	hypothetical protein	A0A290GJW3	Caldibacillus_phage	2.5e-13	39.8
WP_171283832.1\|1084930_1085269_+	hypothetical protein	A0A1B0Y6B8	Lactobacillus_phage	9.3e-09	42.9
WP_171283652.1\|1085171_1086248_+	hypothetical protein	A0A0A8WI49	Clostridium_phage	2.5e-47	34.6

DBSCAN-SWA_7

1103743 : 1115663

Spiroplasma_virus(91.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937609.1\|1103743_1103980_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.0e-30	96.2
WP_071937611.1\|1105379_1105583_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	2.4e-28	92.5
WP_071937612.1\|1105735_1106191_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	9.1e-68	87.4
WP_171283284.1\|1106641_1106803_+	hypothetical protein	NA	NA	NA	NA
WP_171283659.1\|1106894_1107074_+	hypothetical protein	A8RHI0	Spiroplasma_virus	4.6e-07	62.2
WP_155522133.1\|1108410_1108569_+	hypothetical protein	NA	NA	NA	NA
WP_071937616.1\|1108552_1109002_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	7.9e-72	91.3
WP_071937469.1\|1109154_1109358_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_147077417.1\|1110365_1110707_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	1.2e-40	97.7
WP_015967964.1\|1110706_1110943_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937618.1\|1110954_1113081_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.4
WP_071937619.1\|1113095_1113497_-	lipoprotein	NA	NA	NA	NA
WP_171283660.1\|1113611_1114580_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.0e-15	27.4
WP_071937620.1\|1115263_1115515_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_147077445.1\|1115483_1115663_-	hypothetical protein	A8RHI0	Spiroplasma_virus	1.7e-06	60.0

DBSCAN-SWA_8

1178417 : 1187777

Spiroplasma_virus(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171283834.1\|1178417_1178669_+	hypothetical protein	A8RHI2	Spiroplasma_virus	1.3e-31	86.7
WP_015979231.1\|1179092_1179332_+	hypothetical protein	NA	NA	NA	NA
WP_015979233.1\|1180019_1180460_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.1e-69	90.4
WP_015979235.1\|1180612_1180816_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	8.3e-29	94.0
WP_147077472.1\|1180815_1181829_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	8.9e-172	90.8
WP_071937672.1\|1181821_1182163_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	1.2e-40	96.6
WP_071937673.1\|1182162_1182399_+	hypothetical protein	A8RHK0	Spiroplasma_virus	3.2e-32	96.2
WP_171283676.1\|1182410_1184615_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.9
WP_071937675.1\|1184641_1185109_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	1.9e-12	41.4
WP_071937676.1\|1186624_1186984_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_171283677.1\|1187007_1187202_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_171283678.1\|1187246_1187777_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.6e-09	29.2

DBSCAN-SWA_9

1192193 : 1225789

Spiroplasma_phage(100.0%)

protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937684.1\|1192193_1192484_-	PTS lactose/cellobiose transporter subunit IIA	Q9QTH0	Spiroplasma_phage	3.4e-07	96.3
WP_071937685.1\|1192882_1193065_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	3.7e-20	85.0
WP_071937686.1\|1193407_1193647_-	hypothetical protein	Q3ZVE8	Spiroplasma_phage	7.2e-32	98.7
WP_147077482.1\|1193646_1193937_-	hypothetical protein	Q3ZVE9	Spiroplasma_phage	2.6e-44	95.8
WP_071937688.1\|1194948_1195146_-	hypothetical protein	NA	NA	NA	NA
WP_147077749.1\|1195120_1195309_-	hypothetical protein	Q3ZVF1	Spiroplasma_phage	9.4e-19	94.2
WP_147077751.1\|1195373_1195565_-	hypothetical protein	Q3ZVF2	Spiroplasma_phage	5.6e-27	98.4
WP_155522136.1\|1195651_1195825_-	hypothetical protein	Q3ZVF3	Spiroplasma_phage	1.7e-19	100.0
WP_071937689.1\|1196013_1196283_-	hypothetical protein	Q3ZVF5	Spiroplasma_phage	7.3e-41	94.4
WP_071937690.1\|1196610_1196925_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	2.3e-46	91.3
WP_171283682.1\|1197363_1197588_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	3.0e-32	94.1
WP_171283683.1\|1197947_1198307_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.1e-52	83.2
WP_071937693.1\|1198446_1198725_-	hypothetical protein	NA	NA	NA	NA
WP_071937694.1\|1198861_1199704_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	3.3e-148	92.8
WP_171283684.1\|1199843_1200428_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_147077490.1\|1200630_1202034_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	1.6e-134	65.6
WP_147077492.1\|1202046_1202283_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	1.5e-29	90.9
WP_147077495.1\|1202282_1202576_-	hypothetical protein	Q9QTI1	Spiroplasma_phage	2.2e-30	94.4
WP_171283685.1\|1202568_1203579_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	1.5e-166	93.5
WP_147077499.1\|1203583_1203793_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	7.5e-09	56.5
WP_167693728.1\|1203792_1203951_-	hypothetical protein	Q9QTH0	Spiroplasma_phage	2.3e-18	96.2
WP_147077501.1\|1204013_1204217_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	3.7e-13	83.1
WP_147077503.1\|1204348_1204531_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	1.4e-19	85.0
WP_147077505.1\|1204530_1204758_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	1.3e-27	88.9
WP_155522138.1\|1204960_1205098_-	hypothetical protein	NA	NA	NA	NA
WP_171283686.1\|1205099_1205453_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	1.6e-14	39.5
WP_171283687.1\|1205768_1206662_-	hypothetical protein	NA	NA	NA	NA
WP_147077510.1\|1206790_1207801_-	plectrovirus svts2 rep protein	Q3ZVF7	Spiroplasma_phage	1.1e-140	77.1
WP_171283688.1\|1207926_1209195_-	AAA family ATPase	NA	NA	NA	NA
WP_171283689.1\|1209503_1209962_-	hypothetical protein	NA	NA	NA	NA
WP_171283690.1\|1210702_1210909_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.8e-23	80.3
WP_171283691.1\|1210922_1211387_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.1e-52	77.2
WP_171283692.1\|1211340_1211562_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.7e-27	75.3
WP_147077516.1\|1211858_1212074_-	hypothetical protein	NA	NA	NA	NA
WP_171283693.1\|1212317_1213721_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	1.2e-131	65.1
WP_171283694.1\|1213733_1213970_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	1.0e-30	94.8
WP_071937748.1\|1214396_1215407_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	6.8e-172	95.5
WP_071937747.1\|1215411_1215621_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	7.2e-12	75.4
WP_167693727.1\|1215620_1215779_-	hypothetical protein	Q9QTH0	Spiroplasma_phage	1.5e-17	92.3
WP_071937746.1\|1215841_1216045_-	hypothetical protein	Q3ZVF2	Spiroplasma_phage	1.3e-13	63.9
WP_071937745.1\|1216176_1216359_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	2.6e-21	93.3
WP_071937744.1\|1216358_1216559_-	hypothetical protein	NA	NA	NA	NA
WP_167693726.1\|1216760_1216901_-	hypothetical protein	NA	NA	NA	NA
WP_071937742.1\|1216902_1217217_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	1.1e-48	91.3
WP_171283695.1\|1217559_1218165_-	hypothetical protein	NA	NA	NA	NA
WP_171283696.1\|1218941_1219313_-	hypothetical protein	NA	NA	NA	NA
WP_171283697.1\|1219839_1220895_-	plectrovirus svts2 rep protein	Q3ZVF7	Spiroplasma_phage	5.5e-108	59.6
WP_171283698.1\|1221129_1222533_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	1.4e-138	67.3
WP_071937697.1\|1222546_1222783_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	2.3e-30	92.2
WP_171283699.1\|1222782_1223076_-	hypothetical protein	Q9QTI1	Spiroplasma_phage	5.2e-32	98.6
WP_171283700.1\|1223068_1224079_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	9.5e-174	96.7
WP_167693725.1\|1224293_1224452_-	hypothetical protein	Q9QTH0	Spiroplasma_phage	1.5e-17	94.2
WP_071937717.1\|1224866_1225049_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	2.2e-20	86.7
WP_071937718.1\|1225048_1225276_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	3.8e-30	94.4
WP_071937719.1\|1225474_1225789_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	1.2e-50	96.2

DBSCAN-SWA_10

1230628 : 1236208

Spiroplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937724.1\|1230628_1230865_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	1.5e-29	92.2
WP_071937752.1\|1232510_1233050_+	hypothetical protein	NA	NA	NA	NA
WP_171283702.1\|1233285_1233558_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	5.2e-26	67.0
WP_171283703.1\|1233646_1234288_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	4.9e-83	76.0
WP_071937755.1\|1234665_1234884_+	hypothetical protein	NA	NA	NA	NA
WP_071937756.1\|1234855_1235044_+	hypothetical protein	NA	NA	NA	NA
WP_071937757.1\|1235242_1235470_+	hypothetical protein	Q9QTH4	Spiroplasma_phage	5.4e-29	93.1
WP_071937758.1\|1235469_1235652_+	hypothetical protein	Q9QTH2	Spiroplasma_phage	4.8e-20	85.0
WP_071937759.1\|1235783_1235987_+	hypothetical protein	NA	NA	NA	NA
WP_167693728.1\|1236049_1236208_+	hypothetical protein	Q9QTH0	Spiroplasma_phage	2.3e-18	96.2

DBSCAN-SWA_11

1370455 : 1423868

Spiroplasma_virus(42.86%)

transposase,terminase,portal,head,tRNA,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171283741.1\|1370455_1372162_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	2.8e-77	34.2
WP_071937869.1\|1372684_1373887_+\|portal	phage portal protein	J9QE83	Clostridium_phage	1.0e-25	25.7
WP_164028371.1\|1373861_1375649_+\|capsid	phage major capsid protein	A0A1W6JQG3	Corynebacterium_phage	1.1e-07	28.4
WP_171283742.1\|1375672_1376359_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_071937188.1\|1376369_1376768_+	hypothetical protein	NA	NA	NA	NA
WP_071937187.1\|1376773_1377151_+	hypothetical protein	NA	NA	NA	NA
WP_171283743.1\|1377166_1377682_+	hypothetical protein	A6M958	Geobacillus_virus	4.0e-19	38.5
WP_171283744.1\|1377747_1378254_+	hypothetical protein	NA	NA	NA	NA
WP_171283745.1\|1378268_1379819_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_171283746.1\|1379828_1380761_+	hypothetical protein	NA	NA	NA	NA
WP_071937872.1\|1380778_1382230_+	hypothetical protein	NA	NA	NA	NA
WP_171283747.1\|1382654_1383176_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937179.1\|1383192_1383567_+	hypothetical protein	NA	NA	NA	NA
WP_171283748.1\|1383818_1384463_+	hypothetical protein	NA	NA	NA	NA
WP_171283749.1\|1384712_1384955_+	hypothetical protein	NA	NA	NA	NA
WP_071937561.1\|1386143_1386746_+	hypothetical protein	NA	NA	NA	NA
WP_171283750.1\|1386761_1388396_+	hypothetical protein	NA	NA	NA	NA
WP_071937876.1\|1388411_1388693_+	hypothetical protein	NA	NA	NA	NA
WP_071937877.1\|1388673_1388886_+	hypothetical protein	NA	NA	NA	NA
WP_071937878.1\|1388923_1389442_-	lipoprotein	NA	NA	NA	NA
WP_171283751.1\|1389580_1389973_+	hypothetical protein	NA	NA	NA	NA
WP_071937879.1\|1390163_1391486_+	UPF0236 family protein	NA	NA	NA	NA
WP_071937880.1\|1391810_1392005_-	hypothetical protein	NA	NA	NA	NA
WP_171283752.1\|1391998_1393549_-	sodium-dependent transporter	NA	NA	NA	NA
WP_171283753.1\|1393605_1395261_-	hypothetical protein	NA	NA	NA	NA
WP_071937883.1\|1398644_1399010_-	PTS transporter subunit EIIB	NA	NA	NA	NA
WP_171283754.1\|1399012_1399822_-	NAD(+)/NADH kinase	NA	NA	NA	NA
WP_171283838.1\|1399909_1400296_-	hypothetical protein	NA	NA	NA	NA
WP_171283755.1\|1401029_1403453_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	1.3e-269	59.5
WP_071937887.1\|1404268_1404685_+	hypothetical protein	NA	NA	NA	NA
WP_004027799.1\|1405100_1405412_-	thioredoxin	A0A1V0SD63	Indivirus	5.0e-17	41.0
WP_071937888.1\|1405466_1406276_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_171283756.1\|1407753_1408101_-	hypothetical protein	NA	NA	NA	NA
WP_071937782.1\|1409302_1409506_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	2.2e-29	94.0
WP_071937891.1\|1410920_1411172_-	hypothetical protein	A8RHI2	Spiroplasma_virus	9.3e-30	86.7
WP_015979229.1\|1411171_1411321_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_164023930.1\|1411470_1411650_-	hypothetical protein	NA	NA	NA	NA
WP_071937892.1\|1414049_1414958_+	nicotinamide mononucleotide transporter	A0A2R4AM71	Aeromonas_phage	2.0e-13	28.6
WP_071937131.1\|1415720_1415972_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_147077643.1\|1416444_1416696_-	hypothetical protein	A8RHI2	Spiroplasma_virus	9.9e-32	86.7
WP_071890527.1\|1416695_1416845_-	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_157092885.1\|1417156_1418308_+	DUF3688 family protein	NA	NA	NA	NA
WP_071937894.1\|1418336_1418855_-	lipoprotein	NA	NA	NA	NA
WP_147077647.1\|1419199_1419379_-	hypothetical protein	NA	NA	NA	NA
WP_171283757.1\|1419457_1420597_-	hypothetical protein	NA	NA	NA	NA
WP_071937895.1\|1421905_1422586_-	hypothetical protein	NA	NA	NA	NA
WP_171283758.1\|1422902_1423868_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.6e-27	32.4

DBSCAN-SWA_12

1489157 : 1498335

Spiroplasma_virus(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937945.1\|1489157_1489610_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	2.3e-10	41.1
WP_071937946.1\|1491776_1492013_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.9e-32	97.4
WP_071937947.1\|1492012_1492390_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.8e-38	97.6
WP_071937948.1\|1493395_1493599_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	1.3e-29	95.5
WP_084566901.1\|1493751_1494192_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.3e-68	91.1
WP_071937951.1\|1494539_1494779_-	hypothetical protein	NA	NA	NA	NA
WP_015967969.1\|1495257_1495407_-	hypothetical protein	A8RHI0	Spiroplasma_virus	1.2e-13	81.6
WP_171283287.1\|1495510_1495684_-	hypothetical protein	NA	NA	NA	NA
WP_171283774.1\|1496910_1498335_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	8.6e-96	39.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053305

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP053307

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP053311

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP053304

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection