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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP053292 Clostridium butyricum strain 16-3 chromosome 1, complete sequence 6 crisprs DEDDh,cas3,csa3,DinG,csx1 1 1 11 0
NZ_CP053293 Clostridium butyricum strain 16-3 chromosome 2, complete sequence 2 crisprs DEDDh,RT,WYL,csa3 0 2 0 0

Results visualization

1. NZ_CP053292
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053292_1 278668-278756 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053292_2 281941-282027 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053292_3 338004-338090 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053292_4 1527787-1527870 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053292_5 2129154-2129376 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053292_6 3113457-3113530 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP053292_6 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder 3113481-3113506 26 NZ_CP053292.1 288517-288542 1 0.962
NZ_CP053292_6 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder 3113481-3113506 26 NZ_CP053292.1 21925-21950 2 0.923
NZ_CP053292_6 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder 3113481-3113506 26 NZ_CP053292.1 27562-27587 2 0.923
NZ_CP053292_6 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder 3113481-3113506 26 NZ_CP053292.1 1117047-1117072 2 0.923
NZ_CP053292_6 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder 3113481-3113506 26 NZ_CP053292.1 2815396-2815421 2 0.923
NZ_CP053292_6 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder 3113481-3113506 26 NZ_CP053292.1 3858813-3858838 2 0.923

1. spacer 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder matches to position: 288517-288542, mismatch: 1, identity: 0.962

gtgaaactccaaattttacatttggt	CRISPR spacer
gtgaaactccaaattttatatttggt	Protospacer
******************.*******

2. spacer 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder matches to position: 21925-21950, mismatch: 2, identity: 0.923

gtgaaactccaaattttacatttggt	CRISPR spacer
gtgagaatccaaattttacatttggt	Protospacer
****.* *******************

3. spacer 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder matches to position: 27562-27587, mismatch: 2, identity: 0.923

gtgaaactccaaattttacatttggt	CRISPR spacer
gtgagaatccaaattttacatttggt	Protospacer
****.* *******************

4. spacer 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder matches to position: 1117047-1117072, mismatch: 2, identity: 0.923

gtgaaactccaaattttacatttggt	CRISPR spacer
gtaaaactccaaattttatatttggt	Protospacer
**.***************.*******

5. spacer 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder matches to position: 2815396-2815421, mismatch: 2, identity: 0.923

gtgaaactccaaattttacatttggt	CRISPR spacer
gtgagaatccaaattttacatttggt	Protospacer
****.* *******************

6. spacer 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder matches to position: 3858813-3858838, mismatch: 2, identity: 0.923

gtgaaactccaaattttacatttggt	CRISPR spacer
gtgagaatccaaattttacatttggt	Protospacer
****.* *******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP053292_6 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder 3113481-3113506 26 NC_049978 IAS virus, complete genome 44110-44135 4 0.846

1. spacer 6.1|3113481|26|NZ_CP053292|CRISPRCasFinder matches to NC_049978 (IAS virus, complete genome) position: , mismatch: 4, identity: 0.846

gtgaaactccaaattttacatttggt	CRISPR spacer
ataaaactcctaatattacatttggt	Protospacer
.*.******* *** ***********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 906061 : 916153 7 Prochlorococcus_phage(42.86%) NA NA
DBSCAN-SWA_2 1540165 : 1546585 15 Clostridioides_phage(33.33%) integrase attL 1534804:1534821|attR 1549997:1550014
DBSCAN-SWA_3 1569824 : 1577836 11 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_4 1583606 : 1589960 8 Burkholderia_phage(33.33%) plate,holin NA
DBSCAN-SWA_5 1688560 : 1695854 15 Clostridium_phage(22.22%) NA NA
DBSCAN-SWA_6 1699539 : 1757106 62 Faecalibacterium_phage(28.57%) head,tRNA,plate,holin,integrase,protease,tail,portal,terminase attL 1724078:1724096|attR 1758105:1758123
DBSCAN-SWA_7 2057449 : 2064291 10 Clostridium_phage(25.0%) transposase,integrase attL 2057397:2057410|attR 2064292:2064305
DBSCAN-SWA_8 2629994 : 2671033 46 Clostridium_phage(74.07%) capsid,plate,holin,integrase,portal,terminase attL 2625748:2625763|attR 2672744:2672759
DBSCAN-SWA_9 2677465 : 2684146 10 Clostridium_phage(57.14%) integrase attL 2680415:2680429|attR 2684905:2684919
DBSCAN-SWA_10 3153872 : 3217945 58 Clostridium_phage(21.43%) protease,coat NA
DBSCAN-SWA_11 3676094 : 3682730 7 Leptospira_phage(16.67%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP053293
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053293_1 568625-568736 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053293_2 568819-568909 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP053293_1 1.1|568655|51|NZ_CP053293|CRISPRCasFinder 568655-568705 51 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 379362-379412 0 1.0
NZ_CP053293_1 1.1|568655|51|NZ_CP053293|CRISPRCasFinder 568655-568705 51 NZ_CP013238 Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence 493938-493988 0 1.0
NZ_CP053293_1 1.1|568655|51|NZ_CP053293|CRISPRCasFinder 568655-568705 51 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 296581-296631 0 1.0
NZ_CP053293_1 1.1|568655|51|NZ_CP053293|CRISPRCasFinder 568655-568705 51 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 882019-882069 0 1.0
NZ_CP053293_1 1.1|568655|51|NZ_CP053293|CRISPRCasFinder 568655-568705 51 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 882034-882084 0 1.0
NZ_CP053293_1 1.1|568655|51|NZ_CP053293|CRISPRCasFinder 568655-568705 51 NZ_AP019717 Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence 331611-331661 0 1.0
NZ_CP053293_2 2.1|568849|31|NZ_CP053293|CRISPRCasFinder 568849-568879 31 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 379188-379218 0 1.0
NZ_CP053293_2 2.1|568849|31|NZ_CP053293|CRISPRCasFinder 568849-568879 31 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 296775-296805 0 1.0
NZ_CP053293_2 2.1|568849|31|NZ_CP053293|CRISPRCasFinder 568849-568879 31 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 882213-882243 0 1.0
NZ_CP053293_2 2.1|568849|31|NZ_CP053293|CRISPRCasFinder 568849-568879 31 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 882228-882258 0 1.0
NZ_CP053293_2 2.1|568849|31|NZ_CP053293|CRISPRCasFinder 568849-568879 31 NZ_AP019717 Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence 331805-331835 0 1.0
NZ_CP053293_2 2.1|568849|31|NZ_CP053293|CRISPRCasFinder 568849-568879 31 NZ_CP013238 Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence 493764-493794 1 0.968

1. spacer 1.1|568655|51|NZ_CP053293|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

2. spacer 1.1|568655|51|NZ_CP053293|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

3. spacer 1.1|568655|51|NZ_CP053293|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

4. spacer 1.1|568655|51|NZ_CP053293|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

5. spacer 1.1|568655|51|NZ_CP053293|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

6. spacer 1.1|568655|51|NZ_CP053293|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

7. spacer 2.1|568849|31|NZ_CP053293|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

8. spacer 2.1|568849|31|NZ_CP053293|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

9. spacer 2.1|568849|31|NZ_CP053293|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

10. spacer 2.1|568849|31|NZ_CP053293|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

11. spacer 2.1|568849|31|NZ_CP053293|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

12. spacer 2.1|568849|31|NZ_CP053293|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 1, identity: 0.968

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttcgttcacaag	Protospacer
********************* *********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage