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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP053078 Staphylococcus aureus strain SA01 plasmid pSA01-04, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP053075 Staphylococcus aureus strain SA01 chromosome, complete genome 9 crisprs cas3,DinG,DEDDh,csa3,RT,WYL 8 3 10 4
NZ_CP053077 Staphylococcus aureus strain SA01 plasmid pSA01-03, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP053076 Staphylococcus aureus strain SA01 plasmid pSA01-tet, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP053075
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053075_1 430073-430174 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053075_2 777841-777923 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053075_3 818790-818868 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053075_4 824245-824514 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053075_5 867760-867841 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053075_6 1291205-1291289 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053075_7 2280984-2281064 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053075_8 2293306-2293391 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053075_9 2401300-2401380 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP053075_3 3.1|818814|31|NZ_CP053075|CRISPRCasFinder 818814-818844 31 NZ_CP053075.1 273651-273681 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 776882-776903 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 867833-867854 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 1276658-1276679 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 1561087-1561108 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 2028829-2028850 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 150440-150461 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 150498-150519 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 273576-273597 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 273686-273707 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 654031-654052 0 1.0
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 1291192-1291213 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 776882-776903 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 867833-867854 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 1276658-1276679 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 1561087-1561108 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 2028829-2028850 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 150440-150461 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 150498-150519 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 273576-273597 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 273686-273707 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 654031-654052 0 1.0
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 1291192-1291213 0 1.0
NZ_CP053075_3 3.1|818814|31|NZ_CP053075|CRISPRCasFinder 818814-818844 31 NZ_CP053075.1 273596-273626 1 0.968
NZ_CP053075_3 3.1|818814|31|NZ_CP053075|CRISPRCasFinder 818814-818844 31 NZ_CP053075.1 1256788-1256818 1 0.968
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 994836-994857 1 0.955
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 1256709-1256730 1 0.955
NZ_CP053075_4 4.1|824281|22|NZ_CP053075|CRT 824281-824302 22 NZ_CP053075.1 1256942-1256963 1 0.955
NZ_CP053075_4 4.2|824339|23|NZ_CP053075|CRT 824339-824361 23 NZ_CP053075.1 777832-777854 1 0.957
NZ_CP053075_4 4.2|824339|23|NZ_CP053075|CRT 824339-824361 23 NZ_CP053075.1 778110-778132 1 0.957
NZ_CP053075_4 4.2|824339|23|NZ_CP053075|CRT 824339-824361 23 NZ_CP053075.1 1560970-1560992 1 0.957
NZ_CP053075_4 4.2|824339|23|NZ_CP053075|CRT 824339-824361 23 NZ_CP053075.1 2028887-2028909 1 0.957
NZ_CP053075_4 4.2|824339|23|NZ_CP053075|CRT 824339-824361 23 NZ_CP053075.1 2390474-2390496 1 0.957
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 994836-994857 1 0.955
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 1256709-1256730 1 0.955
NZ_CP053075_4 4.3|824398|22|NZ_CP053075|CRT 824398-824419 22 NZ_CP053075.1 1256942-1256963 1 0.955
NZ_CP053075_4 4.4|824456|23|NZ_CP053075|CRT 824456-824478 23 NZ_CP053075.1 777832-777854 1 0.957
NZ_CP053075_4 4.4|824456|23|NZ_CP053075|CRT 824456-824478 23 NZ_CP053075.1 778110-778132 1 0.957
NZ_CP053075_4 4.4|824456|23|NZ_CP053075|CRT 824456-824478 23 NZ_CP053075.1 1560970-1560992 1 0.957
NZ_CP053075_4 4.4|824456|23|NZ_CP053075|CRT 824456-824478 23 NZ_CP053075.1 2028887-2028909 1 0.957
NZ_CP053075_4 4.4|824456|23|NZ_CP053075|CRT 824456-824478 23 NZ_CP053075.1 2390474-2390496 1 0.957
NZ_CP053075_5 5.1|867784|34|NZ_CP053075|CRISPRCasFinder 867784-867817 34 NZ_CP053075.1 1560979-1561012 1 0.971
NZ_CP053075_6 6.1|1291231|33|NZ_CP053075|CRISPRCasFinder 1291231-1291263 33 NZ_CP053075.1 1560979-1561011 1 0.97
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 831532-831562 1 0.968
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 831588-831618 1 0.968
NZ_CP053075_4 4.2|824339|23|NZ_CP053075|CRT 824339-824361 23 NZ_CP053075.1 1472650-1472672 2 0.913
NZ_CP053075_4 4.2|824339|23|NZ_CP053075|CRT 824339-824361 23 NZ_CP053075.1 2133769-2133791 2 0.913
NZ_CP053075_4 4.4|824456|23|NZ_CP053075|CRT 824456-824478 23 NZ_CP053075.1 1472650-1472672 2 0.913
NZ_CP053075_4 4.4|824456|23|NZ_CP053075|CRT 824456-824478 23 NZ_CP053075.1 2133769-2133791 2 0.913
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 36457-36487 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 831644-831674 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 1276595-1276625 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 1561023-1561053 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 1767123-1767153 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 2027481-2027511 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 2390527-2390557 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 2566486-2566516 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 391336-391366 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 654086-654116 2 0.935
NZ_CP053075_9 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder 2401325-2401355 31 NZ_CP053075.1 1472589-1472619 2 0.935

1. spacer 3.1|818814|31|NZ_CP053075|CRISPRCasFinder matches to position: 273651-273681, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

2. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 776882-776903, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 867833-867854, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 1276658-1276679, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 1561087-1561108, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 2028829-2028850, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 150440-150461, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 150498-150519, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 273576-273597, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 273686-273707, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 654031-654052, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 1291192-1291213, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 776882-776903, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 867833-867854, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 1276658-1276679, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 1561087-1561108, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 2028829-2028850, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 150440-150461, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 150498-150519, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 273576-273597, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 273686-273707, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

22. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 654031-654052, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

23. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 1291192-1291213, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

24. spacer 3.1|818814|31|NZ_CP053075|CRISPRCasFinder matches to position: 273596-273626, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

25. spacer 3.1|818814|31|NZ_CP053075|CRISPRCasFinder matches to position: 1256788-1256818, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

26. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 994836-994857, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

27. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 1256709-1256730, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

28. spacer 4.1|824281|22|NZ_CP053075|CRT matches to position: 1256942-1256963, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

29. spacer 4.2|824339|23|NZ_CP053075|CRT matches to position: 777832-777854, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

30. spacer 4.2|824339|23|NZ_CP053075|CRT matches to position: 778110-778132, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

31. spacer 4.2|824339|23|NZ_CP053075|CRT matches to position: 1560970-1560992, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

32. spacer 4.2|824339|23|NZ_CP053075|CRT matches to position: 2028887-2028909, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

33. spacer 4.2|824339|23|NZ_CP053075|CRT matches to position: 2390474-2390496, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

34. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 994836-994857, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

35. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 1256709-1256730, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

36. spacer 4.3|824398|22|NZ_CP053075|CRT matches to position: 1256942-1256963, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

37. spacer 4.4|824456|23|NZ_CP053075|CRT matches to position: 777832-777854, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

38. spacer 4.4|824456|23|NZ_CP053075|CRT matches to position: 778110-778132, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

39. spacer 4.4|824456|23|NZ_CP053075|CRT matches to position: 1560970-1560992, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

40. spacer 4.4|824456|23|NZ_CP053075|CRT matches to position: 2028887-2028909, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

41. spacer 4.4|824456|23|NZ_CP053075|CRT matches to position: 2390474-2390496, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

42. spacer 5.1|867784|34|NZ_CP053075|CRISPRCasFinder matches to position: 1560979-1561012, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

43. spacer 6.1|1291231|33|NZ_CP053075|CRISPRCasFinder matches to position: 1560979-1561011, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
************ ********************

44. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 831532-831562, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

45. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 831588-831618, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

46. spacer 4.2|824339|23|NZ_CP053075|CRT matches to position: 1472650-1472672, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

47. spacer 4.2|824339|23|NZ_CP053075|CRT matches to position: 2133769-2133791, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

48. spacer 4.4|824456|23|NZ_CP053075|CRT matches to position: 1472650-1472672, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

49. spacer 4.4|824456|23|NZ_CP053075|CRT matches to position: 2133769-2133791, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

50. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 36457-36487, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

51. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 831644-831674, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

52. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 1276595-1276625, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

53. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 1561023-1561053, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

54. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 1767123-1767153, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

55. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 2027481-2027511, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

56. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 2390527-2390557, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

57. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 2566486-2566516, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

58. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 391336-391366, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

59. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 654086-654116, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

60. spacer 9.1|2401325|31|NZ_CP053075|CRISPRCasFinder matches to position: 1472589-1472619, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP053075_4 4.2|824339|23|NZ_CP053075|CRT 824339-824361 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP053075_4 4.2|824339|23|NZ_CP053075|CRT 824339-824361 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP053075_4 4.4|824456|23|NZ_CP053075|CRT 824456-824478 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP053075_4 4.4|824456|23|NZ_CP053075|CRT 824456-824478 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP053075_8 8.1|2293332|34|NZ_CP053075|CRISPRCasFinder 2293332-2293365 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP053075_8 8.1|2293332|34|NZ_CP053075|CRISPRCasFinder 2293332-2293365 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 4.2|824339|23|NZ_CP053075|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 4.2|824339|23|NZ_CP053075|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 4.4|824456|23|NZ_CP053075|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 4.4|824456|23|NZ_CP053075|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 8.1|2293332|34|NZ_CP053075|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 8.1|2293332|34|NZ_CP053075|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 329512 : 370257 69 Staphylococcus_phage(94.12%) holin,capsid,head,terminase,tail,portal,protease,integrase attL 329402:329419|attR 370754:370771
DBSCAN-SWA_2 755959 : 763781 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 775752 : 790395 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 871803 : 935564 93 Staphylococcus_phage(82.5%) holin,capsid,head,terminase,tail,portal,coat,integrase,plate attL 878846:878864|attR 910502:910520
DBSCAN-SWA_5 1020291 : 1073808 53 Streptococcus_phage(33.33%) tRNA,transposase,bacteriocin,protease NA
DBSCAN-SWA_6 1093733 : 1102206 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1232587 : 1241630 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1862851 : 1929959 61 Staphylococcus_phage(95.35%) tRNA,protease NA
DBSCAN-SWA_9 2038826 : 2138652 108 Staphylococcus_phage(73.85%) tRNA,holin,capsid,head,terminase,tail,portal,protease,integrase,plate attL 2038162:2038186|attR 2140938:2140962
DBSCAN-SWA_10 2181762 : 2201906 21 Streptococcus_phage(94.44%) transposase,integrase attL 2173116:2173130|attR 2192440:2192454
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Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP053075.1|WP_000681968.1|2077484_2077661_-|hypothetical-protein 2077484_2077661_- 58 aa aa NA NA NA 2038826-2138652 yes
NZ_CP053075.1|WP_000990056.1|2077903_2078002_-|hypothetical-protein 2077903_2078002_- 32 aa aa NA NA NA 2038826-2138652 yes
NZ_CP053075.1|WP_000771849.1|2122225_2122375_-|hypothetical-protein 2122225_2122375_- 49 aa aa NA NA NA 2038826-2138652 yes
NZ_CP053075.1|WP_000435352.1|2122389_2122833_-|hypothetical-protein 2122389_2122833_- 147 aa aa NA NA NA 2038826-2138652 yes
2. NZ_CP053077
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 5638 7 Staphylococcus_phage(50.0%) protease,transposase NA
DBSCAN-SWA_2 10242 : 12279 2 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_3 15758 : 16550 1 Enterococcus_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP053076
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5429 : 20938 16 Staphylococcus_phage(63.64%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage