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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP053024 Sphingobium yanoikuyae strain YC-XJ2 plasmid p-C-Sy, complete sequence 0 crisprs NA 0 0 6 0
NZ_CP053022 Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence 0 crisprs WYL 0 0 22 0
NZ_CP053021 Sphingobium yanoikuyae strain YC-XJ2 chromosome, complete genome 0 crisprs c2c9_V-U4,csa3,PD-DExK,cas3,DEDDh,DinG 0 0 8 0
NZ_CP053023 Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence 0 crisprs csa3 0 0 18 0

Results visualization

1. NZ_CP053022
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 3285 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_2 16894 : 151628 110 Ochrobactrum_phage(13.04%) integrase,transposase attL 64672:64687|attR 97659:97672
DBSCAN-SWA_3 164459 : 165020 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_4 174390 : 174951 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_5 180404 : 188630 6 Enterobacteria_phage(25.0%) transposase NA
DBSCAN-SWA_6 198177 : 198624 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_7 203240 : 206381 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_8 209876 : 215012 6 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_9 221482 : 222508 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_10 229294 : 231997 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_11 236280 : 237816 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_12 245130 : 247488 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_13 264955 : 266494 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_14 270309 : 275021 6 Lactobacillus_phage(33.33%) transposase NA
DBSCAN-SWA_15 283404 : 295300 10 Feldmannia_species_virus(20.0%) transposase NA
DBSCAN-SWA_16 299194 : 301747 1 Ectocarpus_siliculosus_virus(100.0%) NA NA
DBSCAN-SWA_17 305311 : 306991 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_18 313097 : 315611 1 Sinorhizobium_phage(100.0%) NA NA
DBSCAN-SWA_19 331258 : 340061 7 Enterobacteria_phage(33.33%) transposase NA
DBSCAN-SWA_20 343708 : 344275 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_21 353004 : 353898 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_22 362207 : 364094 1 uncultured_Mediterranean_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP053024
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 3901 4 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_2 7075 : 10342 4 Streptococcus_phage(33.33%) transposase NA
DBSCAN-SWA_3 14486 : 17642 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_4 23311 : 23932 1 Burkholderia_phage(100.0%) NA NA
DBSCAN-SWA_5 30281 : 39384 8 Salmonella_phage(33.33%) NA NA
DBSCAN-SWA_6 46770 : 55129 7 Paramecium_bursaria_Chlorella_virus(40.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP053021
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 126845 : 185884 69 Paracoccus_phage(17.65%) head,tail,portal,protease,capsid,transposase,terminase,integrase attL 152646:152662|attR 166815:166831
DBSCAN-SWA_2 613024 : 618650 8 uncultured_Mediterranean_phage(66.67%) NA NA
DBSCAN-SWA_3 1091082 : 1099637 9 uncultured_Caudovirales_phage(57.14%) terminase NA
DBSCAN-SWA_4 1110826 : 1116476 8 Sinorhizobium_phage(16.67%) NA NA
DBSCAN-SWA_5 1927007 : 1956108 27 Escherichia_phage(10.0%) tRNA,integrase,protease,transposase attL 1933734:1933749|attR 1962811:1962826
DBSCAN-SWA_6 3213511 : 3223812 13 uncultured_marine_virus(33.33%) head,tail,portal,protease,capsid,terminase NA
DBSCAN-SWA_7 4407207 : 4460314 47 Enterobacteria_phage(37.5%) integrase,transposase attL 4421170:4421185|attR 4462576:4462591
DBSCAN-SWA_8 4984368 : 5042827 50 Geobacillus_phage(11.11%) integrase,protease,transposase attL 5014208:5014224|attR 5053770:5053786
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP053023
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 6559 5 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_2 13751 : 41116 30 Brevibacillus_phage(10.0%) integrase attL 8090:8106|attR 39812:39828
DBSCAN-SWA_3 66720 : 76158 7 Burkholderia_phage(25.0%) integrase NA
DBSCAN-SWA_4 80028 : 85995 5 Cyanophage(33.33%) NA NA
DBSCAN-SWA_5 93481 : 109254 20 uncultured_virus(28.57%) NA NA
DBSCAN-SWA_6 132688 : 133684 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_7 147160 : 150066 4 uncultured_Caudovirales_phage(66.67%) NA NA
DBSCAN-SWA_8 156476 : 157268 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_9 162250 : 162871 1 Burkholderia_phage(100.0%) NA NA
DBSCAN-SWA_10 167750 : 168515 1 Escherichia_phage(100.0%) transposase NA
DBSCAN-SWA_11 172745 : 187081 14 Ochrobactrum_phage(25.0%) transposase NA
DBSCAN-SWA_12 190082 : 190718 1 Microbacterium_phage(100.0%) NA NA
DBSCAN-SWA_13 193775 : 194702 1 Caulobacter_phage(100.0%) NA NA
DBSCAN-SWA_14 197884 : 204000 10 Enterobacteria_phage(20.0%) NA NA
DBSCAN-SWA_15 208717 : 208981 1 Cronobacter_phage(100.0%) NA NA
DBSCAN-SWA_16 217086 : 218196 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_17 222357 : 271414 42 Escherichia_phage(33.33%) integrase,bacteriocin,transposase attL 259096:259110|attR 281400:281414
DBSCAN-SWA_18 277393 : 278080 1 Aurantimonas_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage