CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP051857	Pseudomonas sp. SK chromosome, complete genome	9 crisprs	RT,DEDDh,cas3,csa3,WYL,DinG	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP051857_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051857_1

254625-254715

Orphan

Consensus_repeat	Method
CTGGCCTCTTCGCGGGCTTGCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051857_1

>merge|NZ_CP051857|1|254625-254715|CRISPRCasFinder
CTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAAATATTGAATTTTGTGCATTACCTGTGCCTCTTCGCGGGCTTGCCCGC

>NZ_CP051857|1|1|254625-254715|CRISPRCasFinder
CTGGCCTCTTCGCGGGCTTGCCCGC	TCCCACAGGGACCGCACAAATATTGAATTTTGTGCATTACC
TGTGCCTCTTCGCGGGCTTGCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051857.1\|WP_170027801.1\|253669_254602_+\|serine-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NZ_CP051857.1\|WP_170027797.1\|248250_249432_-\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924
NZ_CP051857.1\|WP_170027805.1\|259554_260526_-\|taurine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226904
NZ_CP051857.1\|WP_170033998.1\|254938_256900_+\|choline-BCCT-transporter-BetT	unknown	unknown	gnl\|CDD\|236635
NZ_CP051857.1\|WP_170027798.1\|249573_250815_-\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924
NZ_CP051857.1\|WP_170027803.1\|257902_258742_-\|taurine-ABC-transporter-permease-TauC	unknown	unknown	gnl\|CDD\|182276
NZ_CP051857.1\|WP_170027804.1\|258738_259527_-\|taurine-ABC-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183056
NZ_CP051857.1\|WP_170027802.1\|257020_257854_-\|taurine-dioxygenase	unknown	unknown	gnl\|CDD\|181947
NZ_CP051857.1\|WP_170027810.1\|265226_266375_+\|FMNH2-dependent-alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|234821
NZ_CP051857.1\|WP_170027793.1\|244321_244966_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP051857.1\|WP_170027809.1\|264203_265169_+\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270275
NZ_CP051857.1\|WP_170027807.1\|262678_263317_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239314
NZ_CP051857.1\|WP_170027795.1\|246066_246867_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP051857.1\|WP_170027799.1\|251079_251838_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	unknown	unknown	gnl\|CDD\|183063
NZ_CP051857.1\|WP_025337317.1\|251840_252509_-\|cystine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185055
NZ_CP051857.1\|WP_170027796.1\|246859_248251_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP051857.1\|WP_170027800.1\|252505_253300_-\|cystine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|183061
NZ_CP051857.1\|WP_170027806.1\|261171_262512_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP051857.1\|WP_170027808.1\|263525_264119_+\|NADPH-dependent-FMN-reductase	unknown	unknown	gnl\|CDD\|182557
NZ_CP051857.1\|WP_170027794.1\|244955_246065_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863

Protein	Function_ID	Function_description	E-value
NZ_CP051857.1\|WP_170027801.1\|253669_254602_+\|serine-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	5.21614e-58
NZ_CP051857.1\|WP_170027797.1\|248250_249432_-\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
NZ_CP051857.1\|WP_170027805.1\|259554_260526_-\|taurine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226904	COG4521, TauA, ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism].	4.57254e-146
NZ_CP051857.1\|WP_170033998.1\|254938_256900_+\|choline-BCCT-transporter-BetT	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
NZ_CP051857.1\|WP_170027798.1\|249573_250815_-\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
NZ_CP051857.1\|WP_170027803.1\|257902_258742_-\|taurine-ABC-transporter-permease-TauC	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	2.21554e-114
NZ_CP051857.1\|WP_170027804.1\|258738_259527_-\|taurine-ABC-transporter-ATP-binding-subunit	gnl\|CDD\|183056	PRK11248, tauB, taurine ABC transporter ATP-binding subunit.	1.89899e-165
NZ_CP051857.1\|WP_170027802.1\|257020_257854_-\|taurine-dioxygenase	gnl\|CDD\|181947	PRK09553, tauD, taurine dioxygenase; Reviewed.	0
NZ_CP051857.1\|WP_170027810.1\|265226_266375_+\|FMNH2-dependent-alkanesulfonate-monooxygenase	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	0
NZ_CP051857.1\|WP_170027793.1\|244321_244966_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	7.47094e-99
NZ_CP051857.1\|WP_170027809.1\|264203_265169_+\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.577e-145
NZ_CP051857.1\|WP_170027807.1\|262678_263317_+\|peroxiredoxin	gnl\|CDD\|239314	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins.	1.89572e-133
NZ_CP051857.1\|WP_170027795.1\|246066_246867_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.82299e-88
NZ_CP051857.1\|WP_170027799.1\|251079_251838_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	gnl\|CDD\|183063	PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional.	9.19191e-175
NZ_CP051857.1\|WP_025337317.1\|251840_252509_-\|cystine-ABC-transporter-permease	gnl\|CDD\|185055	PRK15100, PRK15100, cystine ABC transporter permease.	1.23884e-144
NZ_CP051857.1\|WP_170027796.1\|246859_248251_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP051857.1\|WP_170027800.1\|252505_253300_-\|cystine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|183061	PRK11260, PRK11260, cystine ABC transporter substrate-binding protein.	1.53884e-157
NZ_CP051857.1\|WP_170027806.1\|261171_262512_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	1.67263e-143
NZ_CP051857.1\|WP_170027808.1\|263525_264119_+\|NADPH-dependent-FMN-reductase	gnl\|CDD\|182557	PRK10569, PRK10569, NAD(P)H-dependent FMN reductase; Provisional.	9.9618e-119
NZ_CP051857.1\|WP_170027794.1\|244955_246065_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	4.3368e-150

>NZ_CP051857.1|WP_170027801.1|253669_254602_+|serine-acetyltransferase
MSEQPSSGHWQLQSIVAGLRGAREQWRTRNGRSSGEQGGRELPSREAMRQILEQLCGALFPMRLGPVDLREESEDFYVGHTLDAALTALLAQARLELRYAARQNKAELAGVDAHALRLVQGFAAALPGLRVLLDTDVLAAYHGDPAARSVDEVLLCYPGILAIIHHRLAHHLYQAGLPLLARISSELAHSATGIDIHPGAQIGPSFFIDHGTGVVIGETAIIGERVRIYQAVTLGAKRFPSDESGTLHKGLPRHPIVEDDVVIYAGATVLGRITIGKGSTIGGNVWLTRSVPADSNITQANLQLDCQDKN
>NZ_CP051857.1|WP_170027800.1|252505_253300_-|cystine-ABC-transporter-substrate-binding-protein
MSKFAKPLLNASLALLLGAGLLSQAFAGEQLKTIQEKGVINVGLEGTYPPFSFQDENGKLTGFEVELSELLAKELGVKAKVQPTKWDGILAALESKRLDVVINQVTISEERKKKYDFSEPYTISGIQALILKKKAEQLNIHKAADLAGKKVGVGLGTNYEQWVKQDVPQADVRTYEDDPSKFADLRNGRIDAILIDRLAALEYAQKAKDTQLAGDAFSRLESGVALRKGEPELLAAINKALDKLKADGTLAKLSKKYFGADVTK
>NZ_CP051857.1|WP_025337317.1|251840_252509_-|cystine-ABC-transporter-permease
MIAESLQLVVDSAPFLLKGAGYTVLLSVGGMFFGLLLGFALALMRLSKILPLNWLARVYVSFFRGTPLLVQLFVIYFGMPQIGIELDPIPASLIGLSLNMAAYICEILRAAISSIDRGQWEAAASIGMTRVQAMRRAILPQALRTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITARTFEVFTMYVAVAVIYWVLCSILAHFQNRMEARVNQHDQEH
>NZ_CP051857.1|WP_170027799.1|251079_251838_-|L-cystine-ABC-transporter-ATP-binding-protein-YecC
MIEVKGLTKRFKGQTVLNGIDLTVQPGEVVAIIGPSGSGKTTFLRCLNLLETPDAGQIQIGDISIDANRPLSGQQSAIRRLRQQAGFVFQNFNLFPHRTALENVIEGPVIVKKTPREQAIELGRRLLAKVGLAGKEDAYPRRLSGGQQQRVAIARALAMEPEVILFDEPTSALDPELVGEVLATIRGLAEERRTMIIVTHEMSFARDVANRVIFFDKGVIVEQGEAKALFAAPKEERTRQFLRKFLGTAASE
>NZ_CP051857.1|WP_170027798.1|249573_250815_-|SfnB-family-sulfur-acquisition-oxidoreductase
MSSQANTRFHSDLDSSPVLLPAKVLRNDAEALQAARELAEVAREQAARRDQQRKLPWAEIELFTRSGLGSISVPKAFGGPEVSFETIAEVFRLISAADPALGQIPQNQFGILQLLRLTGTEAQQAAIYRSVLDGWRIGNAGPERGTKDTLTLKARLTRAGDGYRISGEKFYSTGALFAHWVAVKALDDEGRQRLAFVRRGSPGLRIVDDWSGFGQRTTASGTVLLDQVPVDAELVIDNWRQRDIANTQGAASQLIQAAIDAGIAEAAIEDAITFVREKSRPWVDANVERASDDPYVIADVGRLKLELHAAEALLRKAARVLDEVNAAPIDAASAARASIAVAEAKVLTTEIALQASEKLFELAGSRATLAEFNLDRHWRNARVHTLHDPVRWKYHAVGAYHLNGTLPARHSWI
>NZ_CP051857.1|WP_170027797.1|248250_249432_-|SfnB-family-sulfur-acquisition-oxidoreductase
MTTTIITNDTQALAVAEGIAQQLRRDSAQRDRERRLPHAELELFTRSGLWAISVPKAFGGAGVSNVTLAKVIARIAQADGSLGQIPQNHFYALEVLRVNGSPEQQQRLYGEVLAGRRFGNALAELGTRTANDRTTRLSRDGDGFRINGRKFYATGAIYAQRIPTSVVDEHGVQHLAFVPADSQGLQVIDDWSGFGQRTTGSGSVVFDNVHVSAADVVPFQSAFERPTPVGPLAQILHAAIDTGIARAAYEDALHFVRSRSRPWVDSGLDKATDDPLTLKSFGQLAIRLHAAEALLERAGEYLDRARDDSSADKVAAASIAVAEARAISTEISLAAGTTLFELSGSQATLAEHNLDRHWRNARVHTLHDPVRWKYHAIGNYYLNDANPPRRGTI
>NZ_CP051857.1|WP_170027796.1|246859_248251_-|LLM-class-flavin-dependent-oxidoreductase
MAKQILLNAFNMNCIGHINHGLWTHPRDTSTEYKTLDYWTNLARLLERGLFDGLFLADIVGTYDIYGQSLDVTLKESIQLPVNDPLLLVSAMAAVTRHLGFGLTANLTYEAPYLFARRLSTLDHLSNGRVGWNIVTGYLDSAARAMGLAQQPEHDRRYDQADEYLQVLYKLLEGSWADDAVVADRQQRIYARPDRVRKVRHQGEFYQVEGYHLSEPSPQRTPVLFQAGSSARGLAFAGNHAECVFISGQDKAATRAQVDKVRAAAQAAGRDAQAVKVFMGITVIVAATEQQAQARHAEYLQHASAEAGVAHFAASTGIDFAAFELDEPIAFRQGNAIQSATRQLQDNAWTRRRLLQQHALGGRYVTLVGAPEQVAEQLIAWIDDTGLDGFNLTRTVTPESFEAFIDLVIPQLQQRGRYKTAYAEGTLREKLFQADHPYLPADHPGSAYRFASAPTPTGALHHA
>NZ_CP051857.1|WP_170027795.1|246066_246867_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MLEKLFRPVAAIALTLGLSASTLAAEPLKIGTTAAFAIPLEAAVEEAHKQGLEVKLIEFSDWIAPNVSLNSGDIDVNYFQHIPFLENAKAAAGFNLVPYAPGIINNVGLYSKKYQSFADLPEGASVAIANDPINSGRGLQLLAKAGLISLKPGVGYKATEADIVANPKKLKILQVEAVQLVRAYDDADLVQGYPAYIRLANSFDAGSALLFDGLENKEYVIQFVIRPQSKDDPRLARFVDIYQHSPAVRAALDKAHGKLYQVGWEG
>NZ_CP051857.1|WP_170027794.1|244955_246065_-|ATP-binding-cassette-domain-containing-protein
MSQASALRAPTAQPLPTTAREQALRPEVNQAHVRFIGLGKTYPGQAQPALQGIDLNIRHGEIFGIIGRSGAGKSSLLRTINRLEQPSQGRLLIDQVDIAAFDEDQLVALRRRIGMIFQHFNLMSAKTVWQNVELPLKVAGVAKAERQRKVRELLELVGLQEKHQVYPAQLSGGQKQRVGIARALVHDPEILLCDEATSALDPETTTSILELLRDINQRLGLTIVLITHEMAVIRDICHRVVVLERGEVVEQGEVWRVFGAPRHTVTRTLLAPLQARLPAALQASLQATPASHDSAVVLKLTVLGEPELSALFNDLGGRVRLLQGGVETIGEHALGQLILSVQHSPHDPHHLLERARRWAEDVEVLGHVV
>NZ_CP051857.1|WP_170027793.1|244321_244966_-|ABC-transporter-permease
MWFDRLLEGLLDTLLMVGVSSLIALLAGVPMAVLLVTSDKGGIFQAPVLNRVLGAFVNLFRSIPFLILMVALIPFTRLVVGTTYGVWAAVVPLTIAATPFFARIAEVSLREVDHGLVEAAQAMGCRRWHIVWHVLLPEALPGIVGGFTITLVTLINSSAMAGAIGAGGLGDIAYRYGYQRFDSQIMLTVIAMLVALVALIQLGGDRLAKGLNKR
>NZ_CP051857.1|WP_170033998.1|254938_256900_+|choline-BCCT-transporter-BetT
MNPPVFYFAASFILLFGLVVIANPRSAGDWLLAAQNWAANTVGWYYMLAMTLYLVFVVVTALSGYGKIKLGADHDEPEFSYLSWAGMLFAAGISITLFFFCVSEPLTHMLQPPQGEAGTAEAGRQAMQILFLHWGLHGWGVFAFVGMALAYFAYRHNLPLALRSALYPLIGKRINGPIGYAVDGFGIIATVFGLGADMGFGVLHLNAGLDYLFGISHSQWVQVLLIVLMMGAAVAVAVAGVEKGVRVMSDINLFLACALLLFVLFAGPTQHLFNTLIQNLGDYLGALPRKSFDVYAYGENSGWLGGWTVFYWAWWIAWAPFVGLFIARISRGRTIREFVFGVLLIPLGFTLAWMSIFGNSALDQVINHGMIALGQSALDNPAMSLYLLLETYPWSKTVIAVTVFISFVFFVTSADSGTVVLSTLSATGGDADEDGPNWLRIFWGAMTALITSALLFAGSIDSLKSAVVLTSLPFSLILLCMMWGLHKAFYLESQRQIAQMHSLAPFAQSRRGRGGWRQRLSQAVHFPSRDEVYRFMDDVVRPAIADVREVFEQKGLVLITQDDPSHDNVSLKIGHGEEQPFIYQVQMRGYFTPSFALGGLGTQELKNRRYYRAEVHLSEGSQNYDLVGYSREQIINDILDQYERHMQFLHLVR
>NZ_CP051857.1|WP_170027802.1|257020_257854_-|taurine-dioxygenase
MSLTITPLSPALGAQISGVDLSRDISTAQRDAIEQALLQHQVLFFRDQPITPQQQARFAARFGDLHIHPIYPNVPETPQVLILDTAVTDVRDNAVWHTDVTFLPTPALGAVLSAKQLPAYGGDTLWASGIAAFEALSAPLRELLDGLTATHDFTKSFPLERFGTTPEDLARWEATRRNNPPLSHPVVRTHPVSGRKALFVNEGFTTRINELSELESEALLKLLFAHATRPEFSIRWRWQEHDVAFWDNRVTQHFAVDDYRPNRRVMHRATILGDAPF
>NZ_CP051857.1|WP_170027803.1|257902_258742_-|taurine-ABC-transporter-permease-TauC
MSSLDLPVTGKHNTQPRPVARLRAPLATRWISTLTLAGLLLAWWLVTAAGWIEPLFLPSPADIVARAWTLLTQGYMDASLWQHLGASLGRIGVALLAATLTAIPVGIAIGYNRVARGILDPLIEFYRPIPPLAYLPLIVIWCGIGELSKVLLIYLAIFAPIAIATATGVRTVDPAKLRAAQSLGATRAQLIRHVILPSALPDILTGLRIGLGVGWSTLVAAELIAATSGLGFMVQSAAQFLVTDVVVLGILLIALIAFALEMGLRALQRKLVPWHGQSH
>NZ_CP051857.1|WP_170027804.1|258738_259527_-|taurine-ABC-transporter-ATP-binding-subunit
MALLELERISAQYPGAATPVLADINLSLGPRQLLVALGPSGSGKTSLLNLIAGFVAPSGGRITLDGMPVQGPGAERGVVFQDDALLPWQNVLANVAFGLELAGMPRAEREAKAREMLALVDLDGFAERRIWQLSGGQKQRVGLARALAADPRVLLMDEPFGALDAFTREQMQELLLQVWQRTAKPVFLITHDIEEAVFLASELVLLAPNPGRVVERLQLDFGQRHAAGEPARAIKSDPAFIETREHVLARVFSQRQSLQERA
>NZ_CP051857.1|WP_170027805.1|259554_260526_-|taurine-ABC-transporter-substrate-binding-protein
MFPHAPLRLFAALTLASASWLAQAADLTVAYQTTVDPAKVAQVDGTYEKASKASIDWRKFDNGADVITAVASGDVQIGYLGSSPLAAAATRKLPVETFLIATQIGAGEALVARDGINTPQDLVGKKVAVPFVSTGHYSLLAALKSWNIDPSKVQILNLAPPAIIAAWKRGDIDATYVWDPALGVAKENGKVLITSGELAAKGAPTFDAWIVRKDFAAKHPDVVKAFAKVTLDAYADYRKDPKAWLANPDNVAKLAKLSGAKPTDIPVLLQGNVYPLAADQASALGTPTTQALTDTATFLKQQGKVDAVLPDYAPYVSAQYLPN
>NZ_CP051857.1|WP_170027806.1|261171_262512_+|OprD-family-porin
MYKSSLALAVALGVLAQQAGAAGFVEDSKLSLSSRTMYFNNDNREAHATGTAERPDQRESGQGFKLDYISGFTQGTVGFGVDAQALWGIHLDGGEGYHKSGFFPDDGKGSAAQWARFGANAKARFSKTEAHFGSALAPNLPILVSNDGRLLPQTFEGGTIQSKEIDNLTINAGQLTHAMGRASSNRTGLSVAGSNAESNKFRYGGLDYKLTPDLTLQYYYSNLEDFYKQHFLGATHVFKIADDQSFKTDLRYFDSSSDGKNGNDSAYNFNNNGGYAKNTGEIDNKTWSAMFTYTLGGHALMVGHQQVGDDGGFVWLNQGSLTNDSGTSEGAAGSSFYLFTDSMINQFARAGENTTFGQYSYDFAALGVPGLKASLAYLRGDDIRNKSGNGTYNEWERDARIDYTLQEGTFKGLGFSLRQGVYRGSGESSADQDQARFIVNYTYSFL
>NZ_CP051857.1|WP_170027807.1|262678_263317_+|peroxiredoxin
MSLKLGDIAPDFEQDSSAGKIRFHEWLGNSWGVLFSHPADFTPVCTTELGLTAKLKDEFAKRGVKAIALSVDPVDSHQRWIEDINETQNTVVNFPIIADADRKVSDLYDLIHPNASDTLTVRSLFVIDPNKKVRLTITYPASTGRNFNEILRVIDSLQLTDNHKVATPGNWQDGDDVVIVPSLKDEEEIRQRFPKGYRAVKPYLRLTPQPNR
>NZ_CP051857.1|WP_170027808.1|263525_264119_+|NADPH-dependent-FMN-reductase
MLVVSIGGSPSTRSRSGVLLQRSRQWLQDRGVEVVTFQVRDFPAEDLLHARFDSPQVQHFQQLVAQADGLIVATPVYKASFAGALKTLLDLLPERALANKIVLPIATGGSIAHMLAVDYALKPVLSALKAQETLQGIFADDSQIAYADGSKPAQLVPALEQRLQDSLETFHVALARRPRPVAPGVLEERLISARWSI
>NZ_CP051857.1|WP_170027809.1|264203_265169_+|sulfonate-ABC-transporter-substrate-binding-protein
MRTVFLRRGLVALFAAAVSFGAITQAQAESLRIGYQKYGTLVLLKAKGTLEKRLAEQGVQVQWTEFPGGPQLLEGLNVGSIDFGVTGETPPVFAQAAGADLLYVAYEPPAPHSEAILVPKGSPVQSVKDLKGKKVALNKGSNVHYLLVRALQDAGLKYSDIQPVYLPPADARAAFERGSVDAWVIWDPYQAAAEQQLQARTLRDGKGLVDNHQFYLATRNYATQHPAVINTLIEEVRAVGQWSQANPQQVTEQVAPLLGLPADITLTSVKRQGYGAAALTPEVVAAQQKIADTFQALKLIPKPLSIKDVIWTPPAKVASAP
>NZ_CP051857.1|WP_170027810.1|265226_266375_+|FMNH2-dependent-alkanesulfonate-monooxygenase
MSLNIFWFLPTHGDGKYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDSWLVAASLIPVTQRLKFLVALRPGIISPTVAARQAATLDRLSNGRALFNLVTGGDPDELAGDGLHLNHQERYEASVEFTRIWRKVLEGEVVDYDGKHIQVKGAKLLYPPIQQPRPPLYFGGSSEAAQDLAAEQVELYLTWGEPPSAVAEKIAQVREKAAAQGREVRFGIRLHVIVRETNEEAWAAADKLISHLDDDTIARAQASLARFDSVGQQRMAALHNGSRDKLEVSPNLWAGVGLVRGGAGTALVGDGPTVAARVKEYAALGIDTFIFSGYPHLEESYRVAELLFPHLDVQRPEQAKAGGYVSPFGEMVANDILPKSVAQS

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Crispr_ID: NZ_CP051857_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051857_2

806247-806364

Orphan

Consensus_repeat	Method
CTACAAGCGCCGCGGTCACCCAGGTTGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051857_2

>merge|NZ_CP051857|2|806247-806364|CRISPRCasFinder
CTACAAGCGCCGCGGTCACCCAGGTTGTCGCGGTCTGCTGCAGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCCTGGCTCCTACAAGCGCCGCGGTCACCCAGGTTGTCG

>NZ_CP051857|2|2|806247-806364|CRISPRCasFinder
CTACAAGCGCCGCGGTCACCCAGGTTGTCG	CGGTCTGCTGCAGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCCTGGCTC
CTACAAGCGCCGCGGTCACCCAGGTTGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051857.1\|WP_170034024.1\|793061_793385_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100007
NZ_CP051857.1\|WP_170028191.1\|795375_796629_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP051857.1\|WP_170028200.1\|810106_812545_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379314
NZ_CP051857.1\|WP_170028190.1\|794639_795227_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170028203.1\|813913_814219_+\|cation-transporter	unknown	unknown	unknown
NZ_CP051857.1\|WP_170028201.1\|812705_813044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170028199.1\|809365_809854_-\|DUF3015-domain-containing-protein	unknown	unknown	gnl\|CDD\|378601
NZ_CP051857.1\|WP_170028188.1\|791601_793020_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143467
NZ_CP051857.1\|WP_170028196.1\|806422_806920_-\|GreA/GreB-family-elongation-factor	unknown	unknown	gnl\|CDD\|180535
NZ_CP051857.1\|WP_170028195.1\|803631_804972_+\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NZ_CP051857.1\|WP_170028189.1\|793409_794357_-\|arsenic-resistance-protein	unknown	unknown	gnl\|CDD\|223869
NZ_CP051857.1\|WP_170028193.1\|801018_801420_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP051857.1\|WP_170028192.1\|796939_800770_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP051857.1\|WP_170028204.1\|814304_814922_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP051857.1\|WP_170028198.1\|807437_809291_-\|DUF4105-domain-containing-protein	unknown	unknown	gnl\|CDD\|379156
NZ_CP051857.1\|WP_170028194.1\|801650_803318_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP051857.1\|WP_170028187.1\|790545_791589_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235763
NZ_CP051857.1\|WP_170028202.1\|813152_813641_+\|TIGR00645-family-protein	unknown	unknown	gnl\|CDD\|179964
NZ_CP051857.1\|WP_170028205.1\|815096_815342_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170028197.1\|806986_807343_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP051857.1\|WP_170034024.1\|793061_793385_+\|RidA-family-protein	gnl\|CDD\|100007	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	5.48144e-39
NZ_CP051857.1\|WP_170028191.1\|795375_796629_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP051857.1\|WP_170028200.1\|810106_812545_+\|AAA-family-ATPase	gnl\|CDD\|379314	pfam13654, AAA_32, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	0
NZ_CP051857.1\|WP_170028199.1\|809365_809854_-\|DUF3015-domain-containing-protein	gnl\|CDD\|378601	pfam11220, DUF3015, Protein of unknown function (DUF3015). This bacterial family of proteins has no known function.	1.84812e-66
NZ_CP051857.1\|WP_170028188.1\|791601_793020_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143467	cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.	0
NZ_CP051857.1\|WP_170028196.1\|806422_806920_-\|GreA/GreB-family-elongation-factor	gnl\|CDD\|180535	PRK06342, PRK06342, transcription elongation factor GreA.	6.51134e-29
NZ_CP051857.1\|WP_170028195.1\|803631_804972_+\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NZ_CP051857.1\|WP_170028189.1\|793409_794357_-\|arsenic-resistance-protein	gnl\|CDD\|223869	COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism].	2.48929e-36
NZ_CP051857.1\|WP_170028193.1\|801018_801420_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	8.38984e-05
NZ_CP051857.1\|WP_170028192.1\|796939_800770_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.11429e-134
NZ_CP051857.1\|WP_170028204.1\|814304_814922_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	8.4183e-86
NZ_CP051857.1\|WP_170028198.1\|807437_809291_-\|DUF4105-domain-containing-protein	gnl\|CDD\|379156	pfam13387, DUF4105, Domain of unknown function (DUF4105). This is a family of uncharacterized bacterial proteins. There is a highly conserved histidine residue and a well-conserved NCT motif.	4.44235e-64
NZ_CP051857.1\|WP_170028194.1\|801650_803318_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP051857.1\|WP_170028187.1\|790545_791589_+\|homoserine-dehydrogenase	gnl\|CDD\|235763	PRK06270, PRK06270, homoserine dehydrogenase; Provisional.	0
NZ_CP051857.1\|WP_170028202.1\|813152_813641_+\|TIGR00645-family-protein	gnl\|CDD\|179964	PRK05208, PRK05208, hypothetical protein; Provisional.	1.16955e-89

>NZ_CP051857.1|WP_170028195.1|803631_804972_+|NADP-specific-glutamate-dehydrogenase
MIESVDNFLARLKQRDPAQPEFHQAVEEVLRSLWPFLEANPHYLQAGILERMVEPERAVLFRVSWVDDQGKVQVNRGYRIQMSSAIGPYKGGLRFHPSVNLGVLKFLAFEQVFKNSLTSLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMSELYRHIGADLDVPAGDIGVGAREIGFMFGQYKRLANQFTSVLTGKGMTYGGSLIRPEATGYGCVYFAEEMLKRQDKRIDGCRVAISGSGNVAQYAARKVMDLGGKVISLSDSEGTLYAEAGLTDAQWEAVMQLKNVKRGRISELAAQFGLEFRQGQTPWNLPCDIALPCATQNELDVEDARTLLRNGCICVAEGANMPTTLAAVDIFLDAGILYAPGKASNAGGVAVSGLEMSQNAMRLLWSAGEVDSKLHNIMQSIHHACVHYGEEADGRINYVKGANIAGFVKVADAMLAQGVV
>NZ_CP051857.1|WP_170028194.1|801650_803318_+|energy-dependent-translational-throttle-protein-EttA
MAQYVYTMHRLSKVVPPKREILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFDGEARPMPDINVGYLPQEPQLDPNKSVREVVEEAVSVIKDAQARLDEVYAAYAEPDADFDKLAAEQAKLEAILQAADGHNLERQLDVAADALRLPAWDARIEHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDADSVAWLERFLHDFPGTVVAITHDRYFLDNVAGWILELDRGAGIPYEGNYSGWLEAKSERLAQESKQQSAHEKAMKEELEWVRKGAKARQSKSKARLQRFEEMQSQEFQKRSETNEIYIPAGPRLGDKVIEFKNVTKGYGDRVLIDNLSFAMPKGAIVGVIGGNGAGKSTLFRMLMGKEQPDSGSIEIGETVQLACVDQSREDLDGSKTVFQQISDGSDVIRIGNYEIPSRTYVGRFNFKGGDQQKFVKDLSGGERGRLHLALTLKEGGNVLLLDEPSNDLDVETLRSLEEALLDFPGAAIVISHDRWFLDRVATHILAYEDDSNVVFFEGNYTEYEADRKKRLGDAAAQPHRVRHKKLAQ
>NZ_CP051857.1|WP_170028193.1|801018_801420_+|hypothetical-protein
MVTHFSSNGLDSACGRSSQTLVSTAVTEDVSCKSCQRSLSKPEAATAAKSKSPSLAELRKTAKAAAEPAVAVAAASKPAARVVSMPAAQPAKAAQQQPARAAGFSVKAAWAARLAEQGDRCRLPRGKAKQRHV
>NZ_CP051857.1|WP_170028192.1|796939_800770_-|EAL-domain-containing-protein
MTNLTHPPSLRSAPQAPAASLRGSIKGALALLALILLGLLLWQLFAQFSHTQADLRKKTLEGTAELADHLSLNLAFKAQQATNVVQPYANVPTPTALPAVLAGLREHLPDLQSLAWLDAAGKLQADSLAGSPDRQSIDELLKLSQGSPYFFTNSADNSSVYLLLRQGSDEHSGYWLLRLAPAYYRPLITYLDGPGRPLWLLENSRSGEVLQRHAPTPGSNAPLQSVMLAFIDNSTWQLRGLFDAKLARQTLLPALLGKCLLVLFCAMLPVVALINMRRRQRALQEDRRRYQEIFEGTGVALCVLDLSSLPGQLDRYHLRNRAALKHSLALDPNLRRSLLLELKITEINQVARQLLNIECHEGAWRRLIDGTGDGRDSVGMQLIDALIEQRALLELEVRLPAPLGGELHLWLMARLPQQRRDYQAVILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVLSQRMIFSNRHLGQTLGYDRTELAQMGDRFWELLLHPEDATHYQALRHQQRDSGHDQPLHCQLRFRHRDGGWRCYDIREQVLTRDADGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDSRLQLNYVSPSVQSVLGYQADWIFTNGWQSIIANPAQLTGIYSLMERVSKAMGDPALLAQLRSQLPTQLFLFDCLRADGRKIPIELRLVLVWDDDQHFEGVLGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLKDMAQRLLACVDDDDTVARMGGDEFTLLLQPRATREIALNRAIHVAENILASLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQFSDGQLGTRIARVLEESGLPPACLELELTESILMREVNEALQILAGLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPAHQFEAQFANETLFMFN
>NZ_CP051857.1|WP_170028191.1|795375_796629_-|serine-hydroxymethyltransferase
MFSRDLTIAKYDAELFEAMQQEALRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKQLFGADYANVQPHAGSQANAAVYLALLSAGHTILGMSLAHGGHLTHGASVSSSGKLYNAIQYGIDANGLIDYDEVERLAVEHKPKMIVAGFSAYSQVLDFARFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARKNEEIEKKLNSAVFPGAQGGPLEHVIAAKAICFKEALQPEFKAYQQQVVKNAQAMAAVFIERGFDVVSGGTQNHLFLLSLIKQEISGKDADAALGKAFITVNKNSVPNDPRSPFVTSGLRFGTPAVTTRGFKEAECRELAGWICDILADLNNEAVIDAVREKVKAICKKLPVYGN
>NZ_CP051857.1|WP_170028190.1|794639_795227_-|hypothetical-protein
MTAHETLSFTATLLVNGHPLTVLSDAAEGSIQVAHPDSSLGMMDISQALGVLSGPDEAWDAAREAGQVDFHLKGEVSPTLLYFRHSDQGYHLYVRGGAHYGQAVFKSKYGVANVAPVEGAVPSPWLLRLAHTGQAITLADLPNDFAMLNLECVESAQHLATNLIGDGEGGYLITRRSVPATSLRLNIVERGVDWA
>NZ_CP051857.1|WP_170028189.1|793409_794357_-|arsenic-resistance-protein
MTREQLETHQIPIYFAAVLAAVAFGLLASDTARLLQALITPAIAVLMYAMFLQIPFLDLRQGLGNRRFMAALLLANFILVPLLVWAITRGLGDQPALLVGALLVLLTPCIDYVVVFTHIGKGDARLTLAATPVLLLAQLALLPLYLALMLGDNVPLALTPFVEAFVLLIVLPLALAVLTSAGARRSRRVATWNSAWAWLPVPAMALVLLVVIASQIAMVQGDFEQLLPLIPVYLGFMLAAPLLGRLAARLLRLPASEARAVTFSAATRNSLVVLPLALALPDEVRGLAAAAVITQTLVELVSELVYVRVVPRLVR
>NZ_CP051857.1|WP_170034024.1|793061_793385_+|RidA-family-protein
MSLAVSYRGLFETAGVVADDLQLDVQGQLRQALNTIDRLMAEARVTKEQLTRVQLWIADYRHFDLVNEVYDAWLQGCAKPARACVGADLGEGYLVEVQVFAVCSERP
>NZ_CP051857.1|WP_170028188.1|791601_793020_+|aldehyde-dehydrogenase-family-protein
MSLTSVSRVAFQQAALIDVYSPYDGSLVGSVANLTADAVPGLLARARQGVGESAALPRHRRASILEQAARLIERDAADFAGLIVDEAGKTLRQAEKEVKRCINTLKLSAEEARRNAGEVVPFDAYEGSESRQGWFTREPLGLILAITPYNDPLNLVAHKLGPAIAGGNAVILKPSELAPLSALKLVQYLTDAGLPEAVVSVATGGAELGKALVAVRDVRMVSFTGGFATGEQIARGAGLKKLAMDLGGNAPVLVLKDCDLEATVESCVSGAFWAAGQNCIGTQRILVDASIYDAFRQRFVALTQAMVLGDPGRRETDMGPMISEAAARHIEERVNQALQGGARLLCGHQRQGANYAPTVLEGVDHNSRLWREEVFAPVVMLAPFEDIEQAVALANAPEYSLHAGVFTRDLSLALSLAKRIEAGGVMINDSSDYRFDAMPFGGSKYGSLGREGVRFAYEDMTQPKVVCINQMG
>NZ_CP051857.1|WP_170028187.1|790545_791589_+|homoserine-dehydrogenase
MTEYKIALVGFGGVNRALAQLIAERNARWQQELGFALKIVGVTDLFLGSVIDRDGLDAARLAALPAEKGALAQFPQGSAEAFNEAVIKQSGADIIAEATFTNPKDGEPAATFCRWALEAGKHVVTTNKGPIALHAQALKTLAKANGVSFEYEGAVMSGTPVLRMARQTLAGAGLVGFEGILNGTSNYVLTRMEQGLGFADAVAQAQALGYAEADPTADVEGHDVRLKVVILANELLGACLQVSDVTCSGISGIDSAAIQQAQAAGERWKLIGSASRQADGSVRASVEARLLPGNHPLAGITGATNAVAFDTELLGAVTVSGPGAGRVETAFALLSDIVAIHTAGRFA
>NZ_CP051857.1|WP_170028196.1|806422_806920_-|GreA/GreB-family-elongation-factor
MSRAFVNEDQAAAQADQPVERRVSEQPNYVTASGLRQLQDRVAELNALRNELQAQGERGDKQRLADTERDLRYFNARLQSAQVVAAATSRSKVQIGSRVRFVDAQDQEHVVRLVGEDEADAGRGLINWGSPLGRALLGAGPGDEVLWRRPAGEQMIEVVDIEGED
>NZ_CP051857.1|WP_170028197.1|806986_807343_-|hypothetical-protein
MSRYWSGLCIALLLAGCETTHEQLVDRGYPRAFADGYEDGCSSGRQAAGLMVGDFRKDVPRYLHDRQYESGWDDGFRQCQAMQNSEEQRQYHERFWDEREREWQQEKDRGAAKAYRHD
>NZ_CP051857.1|WP_170028198.1|807437_809291_-|DUF4105-domain-containing-protein
MLKRLVSLALCACAPVHAAPLLDQGHLQQLANTPYWIALGHYETAKLGGWRSYVDDDAFFLAEDGAHHPDQELQATVEALYAPASLGDQHAQCRFPARSRWLREQLDLQGLPQPACQEFTTWYQSIDPHSAALIFPAAYLNSPSSMFGHTLLRIDQSKTRSDDTTLLSYAINFGAYIEGSDNSILYAWKGLMGGYPGLFALMPYQEKLSEYRSLENRDLWEYQLDLTPAETGRMVEHVWELKQIQFDYFFFDENCSYRLLELLQVARPSLDLTSQFPLTAIPTDTVKAVRQSGLVSSVKYRPSRERELLARAEPLDHHEKQQVLAISADTAQLQNPDFTALPRPRQALVQDAAYRLERYRANGQQRDAGQARRSFELLQAINRNPPPALDIERPGLPEDGHDSRTWQLGAGTREDRAYAEYGLRMAYHDLNDNAYGFPLGAQIEILQLKVRQYEGNDWQVQRLDLATIRSLTPRNALLKPWSWQVAGGLERVPGKHDDEVLVSHVNGGAGGTWQLADGLLGFALGTLRVEHHNDFAQFIAPAAGFNSGLLWRNGLGNMTLEAKGDYFTNGEVRRSVSLNQQWEISQNLGLRLSASREFSHLATAQNEVMLELKWYHY
>NZ_CP051857.1|WP_170028199.1|809365_809854_-|DUF3015-domain-containing-protein
MKRILLGTLFTVVSLNAMAEAPGGPNCGWGNMLFEGQRGTPAHFLASTTNGTSGNATFGMTSGTNGCSTKASLTYGGKSWFAMNGMMNELSEDMAMGQGEALTTYAVVLGVAPEDRGYFAAVTHQHFNQIFSSADVTAETVHSNTLAVLKNDPRLAKYATEA
>NZ_CP051857.1|WP_170028200.1|810106_812545_+|AAA-family-ATPase
MPDPVAARLRLAPEALTRRFSPEQFAFTNTDDLEPFRGVLGQERAVEALQFGVAMPRPGYNVYVMGEPGTGRFSFVKRYLKAEGKRQQTPADWVYVNHFDDTREPRALELPSGSAGAFIADMNGLIDNLLATFPAVFEHPSYQQKKGAIDRAFNQRYDRALDVIERASLEKDVALYRDASNVAFTPMADGKALDEAEFAQLPEEVREQFHEDIALLEERLNEELASLPQWKRESNNQLRQLNEETITLALQPLLAPLSEKYAENAAVCAYLQSVQLNLLRTVVEQLVDDSKSDAAARKLLEEQYAPSLVVGHHADGGAPVVFEPHPTYDNLFGRIEYSTDQGALYTSYRQLRPGALHRANGGFLILEAEKMLGEPFVWDALKRALQSRKLKMESPLGELGRVATVSLTPQVIPLNVKLIIIGSRQLYYALQDHDPDFQEMFRVLVDFDEDMPMVDENLEQFAQLLRTRTNEEGMAPLTSDAVARLATYSARLAENQSRLSARIGDLFQLVSEADFIRQLASDEMTDAGHIERALKAKATRTGRVSQRVLDDMLAGIILIDTEGAAIGKCNGLTVLEVGDSAFGMPARISATVYPGGSGIVDIEREVNLGQPIHSKGVMILTGYLGSRYAQEFPLAISASIALEQSYGYVDGDSASLGEACTLISALSRTPLKQCFAITGSINQFGEVQAVGGVNEKIEGFFRLCEARGLTGEQGVIIPRANVATLMLDERVLQAVENGMFHVYAVSQADEALSLLVGEEAGVLDDKGQFTEGSVNARVVERLREIAEMIGEEEIEKAEKERLEEVIAQAKPA
>NZ_CP051857.1|WP_170028201.1|812705_813044_+|hypothetical-protein
MRNLSLTRQCLGLVTRIECCIRPLAGDNGMWTLLFAAGMAGEQPSAIKAQGPFHGPLVAESVLNAIVDSLTLHGYQVAEDPQIWCLHLQAQLRRINGDRCRNLGDFQFHPET
>NZ_CP051857.1|WP_170028202.1|813152_813641_+|TIGR00645-family-protein
MERILENAMYASRWLLAPIYFGLSLGLLALALKFFQEVIHVLPNVFALSEADLILVILSLIDMSLVGGLLVMVMISGYENFVSQLDIDESKEKLNWLGKMDSSSLKMKVAASIVAISSIHLLRVFMDAQNISTDYLMWYVIIHMTFVVSAFCMGYLDKLTKH
>NZ_CP051857.1|WP_170028203.1|813913_814219_+|cation-transporter
MNLHQLNTEARSGHVDELNLIAIEGGDYLLEARVKGHAHPLSDARGQRLRVHSVEDARKLLQTIPMVSMNLVHWSVQDEMCGMGTHPEEDLKVPISQRSAW
>NZ_CP051857.1|WP_170028204.1|814304_814922_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MSELNLSTDETRVSYGIGRQLGGQLRDNPPPGVSLEAILAGLTDAFNGADSRVSEADLSASFKVIREVMQAEAAAKAEAAAAAGKEFLAENAKREGITTLASGLQFEVLTAGEGAKPTRESNVRTHYHGTLIDGTVFDSSYDRGQPAEFPVGGVIAGWTEALQLMNAGSKWRLYVPSELAYGAQGVGSIPPHSVLVFDVELLDVL
>NZ_CP051857.1|WP_170028205.1|815096_815342_-|hypothetical-protein
MTYLIDAWLDRPHPYLRILHRETGEVCAVLEQEALDELRDQGDLDMSGLNSSEPGVLKELVRNLFLFCYARALRPGGTDWN

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP051857_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051857_3

1531359-1531436

Orphan

Consensus_repeat	Method
ACCTGAGGGCAGTGCGGGAGCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051857_3

>merge|NZ_CP051857|3|1531359-1531436|CRISPRCasFinder
ACCTGAGGGCAGTGCGGGAGCGGGCATGCCCGCTCCCACAGGGGTATCACTGAACCTGAGGGCAGTGTGGGAGCGGGC

>NZ_CP051857|3|3|1531359-1531436|CRISPRCasFinder
ACCTGAGGGCAGTGCGGGAGCGGGC	ATGCCCGCTCCCACAGGGGTATCACTGA
ACCTGAGGGCAGTGTGGGAGCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051857.1\|WP_170028844.1\|1537671_1538454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170028837.1\|1531473_1532664_-\|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl\|CDD\|281578
NZ_CP051857.1\|WP_170028833.1\|1525536_1526298_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP051857.1\|WP_170028830.1\|1522744_1523080_+\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|129520
NZ_CP051857.1\|WP_170028843.1\|1536514_1537423_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP051857.1\|WP_170028829.1\|1521081_1522215_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_CP051857.1\|WP_170028842.1\|1535370_1535691_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170028840.1\|1533978_1534524_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|237149
NZ_CP051857.1\|WP_170028841.1\|1534594_1535155_-\|Smr/MutS-family-protein	unknown	unknown	gnl\|CDD\|225396
NZ_CP051857.1\|WP_170028838.1\|1532810_1533413_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP051857.1\|WP_170028834.1\|1526464_1527622_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP051857.1\|WP_170028839.1\|1533547_1533919_-\|glutaredoxin	unknown	unknown	gnl\|CDD\|366113
NZ_CP051857.1\|WP_170028828.1\|1520430_1520979_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP051857.1\|WP_010952850.1\|1523182_1523350_-\|DUF2897-family-protein	unknown	unknown	gnl\|CDD\|314384
NZ_CP051857.1\|WP_170028832.1\|1524359_1525361_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP051857.1\|WP_170028831.1\|1523531_1524233_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP051857.1\|WP_170028836.1\|1529344_1531285_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP051857.1\|WP_063911663.1\|1535743_1536334_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP051857.1\|WP_170028835.1\|1527830_1529228_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP051857.1\|WP_170028845.1\|1538519_1539479_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820

Protein	Function_ID	Function_description	E-value
NZ_CP051857.1\|WP_170028837.1\|1531473_1532664_-\|benzoate/H(+)-symporter-BenE-family-transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	3.62028e-152
NZ_CP051857.1\|WP_170028833.1\|1525536_1526298_+\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.5301e-161
NZ_CP051857.1\|WP_170028830.1\|1522744_1523080_+\|ComEA-family-DNA-binding-protein	gnl\|CDD\|129520	TIGR00426, Hypothetical_protein_ybaV_precursor., competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model. [Cellular processes, DNA transformation].	1.36381e-21
NZ_CP051857.1\|WP_170028843.1\|1536514_1537423_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	0
NZ_CP051857.1\|WP_170028829.1\|1521081_1522215_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP051857.1\|WP_170028840.1\|1533978_1534524_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|237149	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed.	1.61027e-111
NZ_CP051857.1\|WP_170028841.1\|1534594_1535155_-\|Smr/MutS-family-protein	gnl\|CDD\|225396	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown].	6.83688e-60
NZ_CP051857.1\|WP_170028838.1\|1532810_1533413_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	8.11329e-49
NZ_CP051857.1\|WP_170028834.1\|1526464_1527622_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.18552e-14
NZ_CP051857.1\|WP_170028839.1\|1533547_1533919_-\|glutaredoxin	gnl\|CDD\|366113	pfam00462, Glutaredoxin, Glutaredoxin.	6.01244e-13
NZ_CP051857.1\|WP_170028828.1\|1520430_1520979_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.99045e-110
NZ_CP051857.1\|WP_010952850.1\|1523182_1523350_-\|DUF2897-family-protein	gnl\|CDD\|314384	pfam11446, DUF2897, Protein of unknown function (DUF2897). This is a bacterial family of uncharacterized proteins.	9.08624e-21
NZ_CP051857.1\|WP_170028832.1\|1524359_1525361_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	0
NZ_CP051857.1\|WP_170028831.1\|1523531_1524233_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	2.74237e-128
NZ_CP051857.1\|WP_170028836.1\|1529344_1531285_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.70429e-60
NZ_CP051857.1\|WP_063911663.1\|1535743_1536334_-\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	5.49162e-67
NZ_CP051857.1\|WP_170028835.1\|1527830_1529228_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.40608e-121
NZ_CP051857.1\|WP_170028845.1\|1538519_1539479_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	5.81459e-10

>NZ_CP051857.1|WP_170028836.1|1529344_1531285_+|methyl-accepting-chemotaxis-protein
MGTSKHGVLANLGMARKLSLGFALVLVLTLAVAAIGIAALYSVSQRFDSLRQLGQFNTDLLRLRQHEQAFALRSDIQQAEALRSGLQSLVERARGLPALAATEAELTAYGQAFEAFVEAVQAKELALDMASWSVSSVANNLDVLQAGLADDGVYTLKQSQGQQGGEFLEQAAQVAQVSRLMLQAMDEARVRLEKSRKGEEGVSQERIAQTVEAASLVGQLQGAVSDAGYQSVLGEVAGHIGSFSEKLNEYTDQLAREQGLKAQLQASAEQVTGRVDQAYLGQEQALQGELQRNAVAIGVATALALLVGVLAAWLITRAVVGPLRHVIARAQRIAAGELGFDAQAPRRDEVGQLMQAMQQMAEGLSGIVSGLQQGIEQLAGNAQALSAVTEQTNREVGSQKDETEQVATAMQQMTATVHDVARNAEEAAQAAQAADEKVDSGQQVVRQSMQRIEQLAAAAETASAGIDSLSAEIHTIGDVLEVIKSVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALARRTRQSTEQIETLVASLRGNAQQSVAQIRGSTELVRLAVADALQTESALGSIAAAVSLIQQMNQQIAAAAEQQSSVAEEISRSVTQIRSSADQAALAMQDNARSSVELAQLGTDLKGMVGHFRL
>NZ_CP051857.1|WP_170028835.1|1527830_1529228_+|PLP-dependent-aminotransferase-family-protein
MHLTLDRTSATPLVQQLTDQLQTWIDRQRLRPGARLPSIRALARSQAVSASCVIEAYDRLVASGWLEARHGTGFFVAERKPGLAADDTQPWGEAADGSWRQFREGHDELLKLGCGWLPSSWRATTELAQAVRQVSRGNPQDLFDYCPPLGLASLRQQLHKRLAQQGIVAGPERILTTQGASHGLDLLVRTLLRPGDTVLVENPGYYNLYNLLRQHQVHMLPVPRGAEGPDLATLEALLARHKPRCLFINSLYHNPTGTSLTPKVAYRLLELAREHDLRIIEDDIYADFQEGPATRLATLDSEQRVIYMASFSKTLSSSLRVGYLVADPALVARLAELKMVSGIGTSRFAEQVVGQMLANGSYRKSMQRLRVRLAQHMARLLGQLELAGWQVFCEPYGGMFVWARVPGRDFACLEHLALQHAVLLTPGSAFDYQGAASAWLRINVAYGQDARAQAFLQHAGRPPQS
>NZ_CP051857.1|WP_170028834.1|1526464_1527622_-|MFS-transporter
MPFAPARLAFALCLITLAVNLPAPLYIAYADLSGQGAGATAVAFASYVLGVLPVLLALGGLADRVGRRPLILAALALSMLATGLLLLAPSLHTLGLARACLGLGTALATATATAYMGELMGSEHGPRAANWVTASTSLGFGLGAALTSLFLLRGPSLTPGSFYWQLLLAAVAMALVWRLPDPRPAQRTRMLRLPCYPRGSVGYGLAILLAWACSGLVIALLPGILRQHGLSVWSGFSTFCVISCGLVFQPMARRLDSRTATLLGLLILPCSYAVLAWGADSGRLGAVLLGAVAASSACYGFIYLGGLAAVNQLAGSEKTRASAGFFLLAYLGFSLPVIFTGLLSDRLGSGLALLVFGGVLTVACVALGLALLSGSVKTAQAARSV
>NZ_CP051857.1|WP_170028833.1|1525536_1526298_+|SDR-family-oxidoreductase
MSMTFSGQVALVTGAAAGIGRATALAFAQQGLKVVVADLDAVGGEATVALIRAAGGEALFIACDVTRDAEVRQLHERLLGAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQLPLLLAQGAGAIVNTASVAGLGAAPKMSIYSASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTEMFRRAYQADPRKAEFAAAMHPVGRIGKVEEIASAVLYLCSDGAAFTTGHCLTVDGGATAI
>NZ_CP051857.1|WP_170028832.1|1524359_1525361_-|NADP-dependent-oxidoreductase
MTQTNRRFLLAKRPVGAVRRDDFSFDSVAVEQPGEGQVLVRNLYLSLDPAMRGWMNEGKSYIPPVGLGQVMRALGVGEVVASNHPGFKPGDHVSGALGVQDYFTGDAQGLHKIDPSLAPLPRYLSALGMTGMTAYFALLEVGQPKAGDTVVISGAAGAVGSIVGQIAKIKGCRVVGIAGGAEKCQYLKDELGFDGVIDYKAEDVLAGLKRECPKGVDVYFDNVGGDILDAVLTRINFKARIVICGAISQYNNKEAVKGPANYLSLLVNRARMEGFVVMDHAKDYGKAAQEIAGWLASGQVKSKEDVVDGLETFPETLLKLFSGENFGKLVLKV
>NZ_CP051857.1|WP_170028831.1|1523531_1524233_+|orotidine-5'-phosphate-decarboxylase
MSACQTPLIVALDFPTREAALKLADQLDPALCRVKVGKELFTSSASGIVETLCDKGFEVFLDLKFHDIPNTTAMAVKAAAEMGVWMVNVHCSGGLRMMAACREELAKRSGPQPLLIGVTVLTSMEREDLAGIGLDIDPQEQVLRLAALAEKAGMDGLVCSALEAPALKAAHPALQLVTPGIRPAGSAQDDQRRILTPRQALDAGSDYLVIGRPISQAADPAQALAAVVAEIRG
>NZ_CP051857.1|WP_010952850.1|1523182_1523350_-|DUF2897-family-protein
MPWYAWLILIIALGSIVGGLMLLRDTAKKLPLTEEQLRKVHERNAEADAKDAQDR
>NZ_CP051857.1|WP_170028830.1|1522744_1523080_+|ComEA-family-DNA-binding-protein
MRNNVLSYLLLPLFASLSFSVSAAPGSATGMPEPVPMVSQQPAQQAQRLNLNTADALTLQKELNGIGKAKAEAIVAYREANGPFASVDELLEIKGIGNALLERNRDKLMVE
>NZ_CP051857.1|WP_170028829.1|1521081_1522215_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MPLKTLTVFGTRPEAIKMAPLALQLARDARFESRVCVTGQHRQMLDQVLGLFEITPDYDLNIMKPGQDLTGVTTEILQGIKPVLAEFKPDLVLVHGDTATTFATSLAAYYQQIQIAHVEAGLRTNNLYSPWPEEGNRRLTGTLAALHFAPTATSRDNLLREGIDPASIFVTGNTVIDALLEVVRKLESPTLKVQFEQQFDYLAGHRRMVLVTGHRRENFGGGFERICEALVQTARQFPDVDVVYPVHLNPNVREPVNRLLADVDNIHLIEPLDYLPFVYLMSRAYVILTDSGGIQEEAPALGKPVLVMRDTTERPEAVAAGTVKLVGTEVGSIVGELARLLTDEGAYREMSFAHNPYGDGKACGRIVEALEARLGLG
>NZ_CP051857.1|WP_170028828.1|1520430_1520979_+|dTDP-4-dehydrorhamnose-3,5-epimerase
MHAVSLAIPEVFLFSPTVFGDERGFFYESFNKRVFNEVIGLQPDFVQDNHSRSVKGVLRGLHYQLPPHAQGKLVRVVQGEVFDVAVDIRRSSPTFGQWVGAVLSADNHKQLWIPPGFAHGFVTLSATAEFVYKTTDFYAAESERCIAWDDPQIAIEWPIDFEPTLSAKDKLGKALGQAELFD
>NZ_CP051857.1|WP_170028837.1|1531473_1532664_-|benzoate/H(+)-symporter-BenE-family-transporter
MTDATSARLRPLADSSPSAIVAGFIAMLTGYTSSLVLMFQAGQAAGLTSAQISSWIWALSIGMAVCSIGLSLRYRTPITVAWSTPGAALLITSLGGVSYGEAIGAYITCAVLVLICGLTGSFERLVKRIPASLASALLAGILFKIGSEIFVAAQHRTLLVLGMFFSYLLVKRLSPRYCVLAALLVGTTLSGALGLLDFSGFRLEAATPVWTTPSFSLAATISIGIPLFVVAMTSQNMPGVAVLRADGYQVPASPLISATGFASLLLAPFGSHGVNLAAISAAICTGPHAHEDPAKRYTAAVWCGIFYGIAGVFGATLAALFAALPKELVLSIAALALFGSIMNGLTVAMSEAREREAALITFMVTASGLTLFSIGSAFWGIVAGVLTLMILNPRRA
>NZ_CP051857.1|WP_170028838.1|1532810_1533413_+|glutathione-S-transferase-family-protein
MYKVYGDYQSGNCYKIKLMLSLLGRPYEWHPVDILKGETETPEFLAMNPNGKVPVLQLEDGSYLWESNAILNFLADGSEFLPVEPRLRTQVLQWQFFEQYSHEPYIAVARFIQFYLGLPDDRVEEYRKLHKGGYKALRVMERQLQMTPYLVGEQYSIADVALYAYTHVAHQGGFDLADYPAVRAWLERVSSHPRHVPMVG
>NZ_CP051857.1|WP_170028839.1|1533547_1533919_-|glutaredoxin
MIVKALRVGLGQLIVFADWLSRPAKRKRDAAAQARVEQAAKGLALYQFHACPFCVKTRRTLHRLNVPVALRDAKHDPVHRQALAEGGGRVKVPCLRIEEAGKVTWMYESKAIIAYLDERFAAL
>NZ_CP051857.1|WP_170028840.1|1533978_1534524_-|GTP-cyclohydrolase-I-FolE
MSLEQNYTEILSQLGEDVSREGLLDTPKRAAKAMKYLCRGYEQTLEEVTNNALFSSDNSEMVLVRDIELYSMCEHHMLPFIGKAHVAYLPKGKVLGLSKVARIVDMYARRLQIQENLSRQIAEAVQQVTGAAGVAVVIEAKHMCMMMRGVEKQNSTMITSVMLGEFRENAATRSEFLSLIK
>NZ_CP051857.1|WP_170028841.1|1534594_1535155_-|Smr/MutS-family-protein
MQDDDFSLFKAEVRGVKPIRHDRADVGKPKADRQQLAGLRQAATVRSDKALVIDGMSDQFVIDVGAEDELLWRRDGVQEGQLRKLKLGQIAFEGSLDLHGMTVEKARETLWDFIAEATRLEVRCVRVTHGKAARLDGKRPMIKSHVNTWLRQHPQVLGFASCSARHGGTGAVYVMLKRTMLEGRDE
>NZ_CP051857.1|WP_170028842.1|1535370_1535691_-|hypothetical-protein
MKLKGSFDAKRLRPREPRNWGARLAAGLAALLATLGVLLAMAGVAGLLGNYPALAELNANKPLSGVLSMAGLLLLWLGVRFWRRSRIRLRRGRELNLAPHLMKKHD
>NZ_CP051857.1|WP_063911663.1|1535743_1536334_-|cysteine-hydrolase
MSVPTTMFRLTGRDYPPAKLSHASLIIIDAQKEYLSGPLALSGMDEAVANIARLLDAARKSGRPIIHVRHLGTVGGRFDPQGPAGQFIPGLEPLEGEIVIEKRMPNAFKNTKLHETLQELGHLDLIVCGFMSHSSVSTTVRRAKDYGYRCTLVEDASATRDLAFKDGVIPAAQIHQCEMAVMADNFACVAPTASLI
>NZ_CP051857.1|WP_170028843.1|1536514_1537423_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MITSRLRTLRDYIRWAVSRFHEHDLFFGHGADNAWDEARLLVLGAVHLPWEVADSYLDCRLEDDERVRLQHLLKRRIEERVPAAYLLGEAWFCGMSFIVDPRVLVPRSPIGELIEKRFEPWLASEPARILDLCTGSGCIGIVAADVFPDAEVVLADLSFDALEVANQNIERHGLDGRVYTVQGDGFAGLPGQRFDLILSNPPYVDAEDFDDMPAEYHHEPELGLACGNDGLDLVRRMLAEAADHLTDKGLLIVEVGNSQVHVEALYPEVDFAWLEFERGGHGVFMLTAEQCRQHQQLFKARV
>NZ_CP051857.1|WP_170028844.1|1537671_1538454_-|hypothetical-protein
MTTTPAAAEPAEESQESPALPWAELTIEHFQLLRLAALPTDRSTGARPLRFVQFGYAERHDKAHSLLRMEIKLPGQKVHKEQNRLDIRVDHGERLVRIGAETGLQLEPLNRGLGRFLLAQAVQWLQRKWSHYRVEGMALPSKDALNEDSRLRRDHCLRGVGIEVEYEDGQHLKGRTVETTVSQLKGAWNSEHVQRVEILDAASLLQQADQQLQEKEAQLRERDERVAKYQREDSGLRFTITCLVAFAVFQAGLLIWIATR
>NZ_CP051857.1|WP_170028845.1|1538519_1539479_-|alpha/beta-fold-hydrolase
MMSRLVALLFLLCTSLAQAAPTVLQRPIDLDTGQGVLHGSLLLPLQATPPPVVLIIAGSGPTDRDGNNPASGRVDNLKRLALLLANEHIASVRYDKRGVAASQPATPDERDLSVERYVADVVAWSHKLKADPRFGPLILVGHSEGALIASLAAEQAGASAVITLAGSGRPLAEVLREQLAQRLPPAQLAGGSALLDRLQAGQTSLEVPAPLRQVFRPSVQPYLISLFRQNPAAAFARLPMPALIVQGRNDVQVDVDDAERLKAAKPDAQLVLIDGMNHMLRISPKGMSQQRDSYLNPELPLARELGERIVTFIQHLPSA

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Crispr_ID: NZ_CP051857_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051857_4

1832388-1832528

Orphan

Consensus_repeat	Method
CCAACTGTAGGAGCGGATTTATCCGCGAAGCAGGCGACGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051857_4

>merge|NZ_CP051857|4|1832388-1832528|CRISPRCasFinder
CCAACTGTAGGAGCGGATTTATCCGCGAAGCAGGCGACGCGGAGGCTGGCACCGGCGGTGCCGGTGATCGCGGCTGAAGCCGCTCCTACGGGGAAAGCACCAACTGTAGGAGCGGATTTATCCGCGAAGCAGGCGATGCGG

>NZ_CP051857|4|4|1832388-1832528|CRISPRCasFinder
CCAACTGTAGGAGCGGATTTATCCGCGAAGCAGGCGACGCGG	AGGCTGGCACCGGCGGTGCCGGTGATCGCGGCTGAAGCCGCTCCTACGGGGAAAGCA
CCAACTGTAGGAGCGGATTTATCCGCGAAGCAGGCGATGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051857.1\|WP_170029076.1\|1844022_1845639_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP051857.1\|WP_170029065.1\|1830583_1831015_+\|peptidase-M15	unknown	unknown	gnl\|CDD\|311960
NZ_CP051857.1\|WP_170029061.1\|1827619_1827949_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170034100.1\|1834367_1835186_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP051857.1\|WP_170029060.1\|1826185_1827517_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|234897
NZ_CP051857.1\|WP_170029066.1\|1831080_1831389_+\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP051857.1\|WP_170029073.1\|1840457_1841600_+\|4-phosphoerythronate-dehydrogenase-PdxB	unknown	unknown	gnl\|CDD\|166874
NZ_CP051857.1\|WP_170029068.1\|1832603_1834169_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP051857.1\|WP_170029074.1\|1841704_1841878_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170029067.1\|1831440_1832325_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_CP051857.1\|WP_051098817.1\|1827945_1828320_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP051857.1\|WP_170029070.1\|1838178_1839243_+\|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM	unknown	unknown	gnl\|CDD\|236971
NZ_CP051857.1\|WP_170029064.1\|1830236_1830476_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NZ_CP051857.1\|WP_170029069.1\|1835217_1837959_-\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NZ_CP051857.1\|WP_170029062.1\|1828329_1828644_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP051857.1\|WP_170029075.1\|1842090_1843854_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131259
NZ_CP051857.1\|WP_170029059.1\|1825285_1825903_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP051857.1\|WP_170029071.1\|1839594_1839825_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170029063.1\|1828955_1830164_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP051857.1\|WP_170029072.1\|1840154_1840397_+\|sulfurtransferase-TusA	unknown	unknown	gnl\|CDD\|178967

Protein	Function_ID	Function_description	E-value
NZ_CP051857.1\|WP_170029076.1\|1844022_1845639_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.91538e-68
NZ_CP051857.1\|WP_170029065.1\|1830583_1831015_+\|peptidase-M15	gnl\|CDD\|311960	pfam08291, Peptidase_M15_3, Peptidase M15.	1.00404e-40
NZ_CP051857.1\|WP_170034100.1\|1834367_1835186_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.35149e-10
NZ_CP051857.1\|WP_170029060.1\|1826185_1827517_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|234897	PRK01096, PRK01096, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_CP051857.1\|WP_170029073.1\|1840457_1841600_+\|4-phosphoerythronate-dehydrogenase-PdxB	gnl\|CDD\|166874	PRK00257, PRK00257, 4-phosphoerythronate dehydrogenase PdxB.	0
NZ_CP051857.1\|WP_170029068.1\|1832603_1834169_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.40859e-74
NZ_CP051857.1\|WP_170029067.1\|1831440_1832325_+\|pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	6.18456e-121
NZ_CP051857.1\|WP_051098817.1\|1827945_1828320_-\|phage-holin-family-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	9.80298e-30
NZ_CP051857.1\|WP_170029070.1\|1838178_1839243_+\|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM	gnl\|CDD\|236971	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional.	0
NZ_CP051857.1\|WP_170029064.1\|1830236_1830476_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	4.76435e-19
NZ_CP051857.1\|WP_170029069.1\|1835217_1837959_-\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP051857.1\|WP_170029062.1\|1828329_1828644_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.99342e-29
NZ_CP051857.1\|WP_170029075.1\|1842090_1843854_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NZ_CP051857.1\|WP_170029059.1\|1825285_1825903_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	9.89589e-58
NZ_CP051857.1\|WP_170029063.1\|1828955_1830164_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	5.08251e-107
NZ_CP051857.1\|WP_170029072.1\|1840154_1840397_+\|sulfurtransferase-TusA	gnl\|CDD\|178967	PRK00299, PRK00299, sulfurtransferase TusA.	1.38347e-47

>NZ_CP051857.1|WP_170029067.1|1831440_1832325_+|pseudouridine-synthase
MTTPFDPARQQASTVCLPPGNWATVLDCLCDHFKAIDRAQWLDRFARGRVLDAEGRAVAAELPYKRGMRLHYFREVPNERPIPVQEAVLHVDEHLVVADKPHFLPVTPSGEYVEQTLLRRLIRQLGNPHLVPLHRIDRHTAGLVLFSANPQSRSAYQRLFPERRIDKRYQAIAAAMPQHDFPLVHKSRLVHGEPFFRMHEVEGEANSETWAEVLEKHGDLWRYGLSPVTGKTHQLRVHMAALGAGISNDPFYPQLLKEEDDYQRPLKLLAQSLRFEDPLSGEERYFESRLHLDW
>NZ_CP051857.1|WP_170029066.1|1831080_1831389_+|transcriptional-regulator
MLNVEQLKYSVNRMPVERVADAVLELRLEGLVTDDRTPFGKVHFNTCFAEIEALFQRAGYHRGLDVVGYQGLLYALYDPGRWEPVQVLRWLKERSEAMAKAG
>NZ_CP051857.1|WP_170029065.1|1830583_1831015_+|peptidase-M15
MLISPHFSLDEMTVSQLAAREGLDNDPPAEARANLQLLCNVLEQVRALFGAPVIVSSGYRSPAVNSRIGGSVTSKHLQGLAADFTVIEVSPREVVRRISESAIPFDQLILEFDQWVHLAVTPGTPQRQVLTIRRGSGYEEGLQ
>NZ_CP051857.1|WP_170029064.1|1830236_1830476_+|glutaredoxin-family-protein
MLPECQLFGTLGCHLCEVAEAVLMPFVDHGLLVELVDISESEAMAERYGLIIPVLRRCDNGAELHWPFDAEQVVAFLAQ
>NZ_CP051857.1|WP_170029063.1|1828955_1830164_+|ammonium-transporter
MENMHSAMDSLVHGSNTLFILMGAILVLAMHAGFAFLEVGTVRHKNQVNALSKILSDFAISALVYFFIGYWIAYGVNFLQPAAALAADQGYALVKCFFLLTFAAAIPAIISGGIAERARFVPQLCATALIVAFVYPFFEGVVWNGNLGLQAWLQARFGAPFHDFAGSVVVHAMGGWLALAAVLLLGARRGRYRDGRLVAFAPSSIPFLALGSWILIIGWFGFNVMSAQTLQGISGLVAINSLMAMVGGTLSALLAGRNDPGFLHNGPLAGLVAVCAGSDLMHPVGALVTGLVAGALFVWTFTAAQNRWKIDDVLGVWPLHGLCGVWGGLACGVFGQAALGGMGGVSLVSQLLGSLLGVLVALAGGFAVYGAIRALHGLRLSHEQEFQGADLSLHRIGATSQD
>NZ_CP051857.1|WP_170029062.1|1828329_1828644_-|DUF883-domain-containing-protein
MASKSAKTAQEILMADFQALVRDTEKLLADTANLAGDQADELRGQIHERLAQARETLQLTQDSVRERGQAALGSAEQYVQENPWQAIGIAAGVGLLIGLLANRH
>NZ_CP051857.1|WP_051098817.1|1827945_1828320_-|phage-holin-family-protein
MDNDANGASASGKRLGAAALGLLHSHIELFGIELQEQKGRTLSLLLFAGLALVFALLLLTALSGLLLVLLWDSYRLAGIIGLCVFYGIAALYCGLRLKAAVFDESSPFGATLEELAKDRERLLP
>NZ_CP051857.1|WP_170029061.1|1827619_1827949_-|hypothetical-protein
MSLPQLPDTRNPRELRKALLRLRMEMHRQEIRHESAQLLEPLRRVRGMGNSLQDGLGIKHAPLWGIGAVVALGFLTGKGVRSGNLARLLRLGTSLLPLVRLYLQGNRRP
>NZ_CP051857.1|WP_170029060.1|1826185_1827517_-|deoxyguanosinetriphosphate-triphosphohydrolase
MDWHTLLTRERLGKALYSADELGRSPFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGMRVGETLRDSLPDWCAPSDLGMIVQSACLAHDIGNPPFGHSGEDAIRHWFQQAAGRGWLDDMNDDERADFLNFEGNAQGFRVLTQLEYHQFDGGTRLTYATLGTYLKYPWSARHADALGYKKHKFGSYQSELPLLEQIARKLGLPQLEHQRWARHPLVYLMEAADDICYALIDLEDGLEMELLQYAEVEALLLDLVGEDLPETYRQLGPGDSRRRKLAILRGKAIEHLTNAAARAFVEQQQALLAGQLAGDLVEHMHGPAKRCVLQAKAMARNKIFQDKRKTLHEIGAYTTLEILLNTFCGAALEQHGGRTPSFKSRRVLDLIGNNAPDPHGSLHSAFLRMIDFIAGMTDSYASEMAREMTGRSSPV
>NZ_CP051857.1|WP_170029059.1|1825285_1825903_-|response-regulator-transcription-factor
MQSIFIVDDHPVIRLAVRMLLENQNYQVVGESDNGVDAMQMIRETNPDLVILDISIPKLDGLEVLSRFQAMALPLKVLVLTAQSPALFAVRCMHSGAAGYVCKQEDLSELLSAIKAVLAGYNYFPSQAIKHNQAMDADLQLFRQVNDRELMVLQLFAQGRSNKEIAKGMFLSSKTVSTYKKRLMHKLQVDTLVDLIEMAKRNALV
>NZ_CP051857.1|WP_170029068.1|1832603_1834169_-|methyl-accepting-chemotaxis-protein
MRNNQPITQRERTFPAQQRLISTTNAKGVITYCNDAFIEISGFTREELTGAPHNLVRHPDVPPAVFAHMWQTLKQGQPWMGIVKNRCKSGDHYWVNAYVTPIFDNNQVVGFESVRVKPTAEQIRRAEALYQRINQGKPPIPRRDKWLPVLQDWLPFILISQVGFLIGNWLGHSWGFALAAGLSVPLGLLGLGWQQRGLKRLLRLAEQTTSDPLIAQMYTDSRGVQARLEMAMLSQDARMKTCLTRLQDSAEHLSEQARQSDALAHKSSSGLERQRVETEQVAAAVNQMAATTQEVANHVQRTADATQEANRLTSQGRQIAGETREAIERLSAAVGETGQTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQTASNAVLTMETGHRQAQEGVDRVMQADEALVGISEAVANITDMATQIAAATEEQTAVADEISRNISTIAQLADQTAEQAQHSALLSEELTSTAGTQYSLVERFNR
>NZ_CP051857.1|WP_170034100.1|1834367_1835186_-|CPBP-family-intramembrane-metalloprotease
MGSGPFPFTREGPLVPRLQLIALLLLALGYTLALSHGKLGIASLPTFLALLTSALLAGRPQRWLQALGHGMFILLAIALALHWLPGFNAAKVIDSATFSPGAQPFTMYLNLDKPLIGAWLLLACPWLILWRSQGLPASLLCALPLTLLACLGGAWALGMVAWAPKWPEQAWLWLLNNLLLVSLTEELLFRGYLQGGLQRLLRHQGLALLAAAMLFGLAHLGAGWQWVYLATLAGVGYGLAYRWGGLAAAVLCHFGLNLVHFALFSYPMLALG
>NZ_CP051857.1|WP_170029069.1|1835217_1837959_-|aconitate-hydratase-AcnA
MPSLDSLNTLKPLKVGDQTYHYYSLTEAARQLGDLQRLPMSLKVLLENLLRWEDGKTVTGEDLRALAQWLGERRSDREIQYRPARVLMQDFTGVPAVVDLAAMRAAMAKAGGDPQRINPLSPVDLVIDHSVMVDRYGTPQAFSENVDIEMQRNGERYAFLRWGQSAFDNFRVVPPGTGICHQVNLEYLGRTVWTREADGRTYAFPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPVSMLIPEVIGFKLTGKLREGITATDLVLTVTQMLRKKGVVGKFVEFYGDGLAELPLADRATIANMAPEYGATCGFFPVDQVTLDYLRLSGRPEATVQLVEQYCKTQGLWRMPGQEPLFSDSLALDMHEVEASLAGPKRPQDRVALGQVRQAFDHFIELQPKPLAKEVGRLESEGGGGVAVGNADQAGEIDYSHQGQTHTLRDGAVVIAAITSCTNTSNPSVMMAAGLVAKKALEKGLQRKPWVKSSLAPGSKVVTDYFKAAGLSTYLDQLGFDLVGYGCTTCIGNSGPLDDAIEKAIGSADLTVASVLSGNRNFEGRVHPLVKTNWLASPPLVVAYALAGTVRLDLTCDPLGIGNDGQPVYLRDIWPSQQEIAAAVAKVDTAMFHKEYAEVFAGDAQWQAIEVPQAATYVWQADSTYIQHPPFFDDIGGPPAQVTDIRGARILALLGDSVTTDHISPAGNIKADSPAGRYLRAQGVEPRDFNSYGSRRGNHEVMMRGTFANIRIRNEMLAGEEGGNTLHVPSGEKLSIYDAAMRYQQAGTPLVVIAGQEYGTGSSRDWAAKGTNLLGVKAVLAESFERIHRSNLVGMGVLPLQFMAGHNRKQLGLTGKEQIDVLGLTGTQLHPGMSLPLRITREDGQQEQIEVLCRIDTLNEVEYFKAGGILHYVLRQLIAG
>NZ_CP051857.1|WP_170029070.1|1838178_1839243_+|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM
MNTLFMHCRPGFEGEVCAEISEHAARLGIAGYAKGKPHSASAEFVSSEEGGAERLMGEMRFNQLIFPRQWARGGYVELPENDRISVLLAHLAGLPVFGSLWLEVLDSNEGKELSTFCRKFEVPLRKALEKAGRLVDDASRPRLLLTFISGRRVFAGVAPANNSALWPMGIPRLKFPREAPSRSTLKLEEAWHQFIPREQWAQRLGDDMTGVDLGASPGGWTYQLVRRGMLVTAIDNGPMAESLMDTGLVQHLMADGFTWQPKQPVDWMVCDIVEKPARTTALIETWLGEGLCREAVVNLKLPMKQRYAEVRRLLERMEATFKARKIKVSIACKQLYHDREEVTCHLRRIDLKPR
>NZ_CP051857.1|WP_170029071.1|1839594_1839825_-|hypothetical-protein
MMGAQRFLVTFCRVWQKVTRRKGEKVSQRRHRQWTLRAIKTSAIPLQAFRFSLFAFRFSLFAFRFSLFAFKRGLQQ
>NZ_CP051857.1|WP_170029072.1|1840154_1840397_+|sulfurtransferase-TusA
MTEFTPDAILDATGLNCPEPVMMLHQHVRDLAAGGLLKVIATDPSTRRDIPKFCNFLGHELLQQQEDAGTFLYWIRKKAD
>NZ_CP051857.1|WP_170029073.1|1840457_1841600_+|4-phosphoerythronate-dehydrogenase-PdxB
MLIVADENIPLLDAFFQGFGEIRRYPGRSLDAASVKDADILLVRSVTKVDRQLLEGSRVRFVGTCTIGTDHLDLDYFAEAGIRWSSAPGCNARGVVDYVLGSLLTLAELDGVALPERVYGVVGAGEVGGRLVRVLHGLGWKVLVCDPLRQAAEGGDYVSLDTLLQQCDVISLHTPLQRGGEHPTWHLLGQAQLAQLRPGAWLINASRGPVVDNSALRELLLDREDVHAVLDVWEGEPQVDLQLADLCTLASPHIAGYSLDGRQRGTAQIYQALCRFLGVEAQVQLADLLPRPPLAQIELDADADPAWALATLCRAVYDPRRDDADFRRSLSDDPQQQRAAFDQLRKQYPPRREIEGLAVRLRGESPQLAQLVSALGGVLV
>NZ_CP051857.1|WP_170029074.1|1841704_1841878_-|hypothetical-protein
MSLQHGSDNQKPRPIPPTQVCGSIIDAQGREVPITEQMIQQACKALEQSRVERVRKG
>NZ_CP051857.1|WP_170029075.1|1842090_1843854_+|ATP-binding-cassette-domain-containing-protein
MPESVSPRQRRALRLGWQFLRPYRRQMLLALLALVVTAAITLSMGQGIRLLVDQGFMTRSAHQLNQTIGLFLLLVLALAVGTFSRFYLVSWIGERCVADIRRAVFDHLIGLHPGFFEDNRSSEIQSRLTADTTLLQSVIGSSLSMFLRNALMVIGGVVLLFITNPKLTSIVVVALPLVLAPILLFGRRVRRLSRQSQDRVADVGSYVAETLGQIKTVQAYNHQAHDRKLFAGAVEAAFAVARQRIAQRAWLITLVIVLVLGAVGVMLWVGGMDVIAGRISAGELAAFVFYSLLVGSAFGTLSEVIGELQRAAGAAERIAELLAARTAILAPSVARVLPQQRASGRIELQELLFAYPSRPSVAAVDGLSLTIEPGQTVALVGPSGAGKSTLFDLLLRFYDPQQGRILLDGEAITELDPEQLRRQFALVAQSPALFRGTVEANIRYGRPEATLAEVEAAARGAHADAFIRQLPQGYQTPLGEGGIGLSGGQRQRLSIARALLVDAPILLLDEATSALDAQSEHLIQQALPSLMAGRTTVVIAHRLATVQHADRIAVIDKGRLVAIGTHRQLIETSPLYARLAALQFTTG
>NZ_CP051857.1|WP_170029076.1|1844022_1845639_+|methyl-accepting-chemotaxis-protein
MLRKSLRVQILSLLGGSLLAMLLIALVCFQVLSSSVRGYAELVDGPLRASQLIDEANLQFKIQVQEWKNVLLRGRQPADMDKYWQQFQAREQQVQQLLGQLIESSDARLKAPLQQLRDSHRQLGQAYAQGRQAFLAAGGDPVAGDQAVKGVDRAASEQMSELVEQLRADARQRAASLSAGAERTVWLGLLVMLASAVLVGLFSLWLVNRSLIEPIRQLIDYVAQLSQGRFAARVDSRREDELGRLARAANTLRDFLADTVGRLQDNAQELEGASGQLRNIAGDMARGTHDQFQRTDQVATAMHEMSATAQEVARHAAEAARAADDADHSAQAGEQVMQQTIDIIGVVNREIAGTAAVIRDLEHDSTRIGKVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTAASIAEIQQIIEAVQSGAVEAAKAIESGQQRSEEGAAQVQQAGQMLQRITLAVEAIRDMNRQIATAAEEQTSVAEDISRNLIEITRIATANQEAVQHTEQAGQRLHGLSGQLGEVTSRLTA

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Crispr_ID: NZ_CP051857_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051857_5

2321617-2321730

Orphan

Consensus_repeat	Method
CGTCTGCTTCGCGGATAAATCCGCTCCTACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051857_5

>merge|NZ_CP051857|5|2321617-2321730|CRISPRCasFinder
CGTCTGCTTCGCGGATAAATCCGCTCCTACAGGAGCAGCTTCACCCGCGAACACCGGCACAGCCGGTGCCATTCACCGCGTCGTCTGCTTCGCGGATAAATCCGCTCCTACAGG

>NZ_CP051857|5|5|2321617-2321730|CRISPRCasFinder
CGTCTGCTTCGCGGATAAATCCGCTCCTACAGG	AGCAGCTTCACCCGCGAACACCGGCACAGCCGGTGCCATTCACCGCGT
CGTCTGCTTCGCGGATAAATCCGCTCCTACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051857.1\|WP_170029455.1\|2313901_2314564_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP051857.1\|WP_170029456.1\|2314560_2315931_+\|sensor-histidine-kinase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182388
NZ_CP051857.1\|WP_170029454.1\|2313257_2313899_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP051857.1\|WP_170029470.1\|2329009_2329852_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP051857.1\|WP_170029461.1\|2318683_2319313_+\|paraquat-inducible-protein-A	unknown	unknown	gnl\|CDD\|225542
NZ_CP051857.1\|WP_170029457.1\|2315934_2316321_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319924
NZ_CP051857.1\|WP_170029467.1\|2325215_2325707_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP051857.1\|WP_170029458.1\|2316514_2317420_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176104
NZ_CP051857.1\|WP_170029462.1\|2319312_2320953_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|225553
NZ_CP051857.1\|WP_170029472.1\|2331442_2332936_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143430
NZ_CP051857.1\|WP_170029465.1\|2323722_2323869_+\|DUF2986-domain-containing-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170029466.1\|2324476_2325061_-\|biliverdin-producing-heme-oxygenase	unknown	unknown	gnl\|CDD\|225770
NZ_CP051857.1\|WP_170029469.1\|2327354_2328731_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP051857.1\|WP_170034138.1\|2323910_2324279_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367272
NZ_CP051857.1\|WP_170029468.1\|2325780_2327139_-\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184
NZ_CP051857.1\|WP_170029460.1\|2318090_2318687_+\|paraquat-inducible-protein-A	unknown	unknown	gnl\|CDD\|377345
NZ_CP051857.1\|WP_170029464.1\|2321789_2323568_-\|phosphoethanolamine-transferase-CptA	unknown	unknown	gnl\|CDD\|333729
NZ_CP051857.1\|WP_170029459.1\|2317468_2317942_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170029463.1\|2320964_2321498_+\|membrane-integrity-associated-transporter-subunit-PqiC	unknown	unknown	gnl\|CDD\|377153
NZ_CP051857.1\|WP_170029471.1\|2329894_2331277_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|171472

Protein	Function_ID	Function_description	E-value
NZ_CP051857.1\|WP_170029455.1\|2313901_2314564_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.03993e-81
NZ_CP051857.1\|WP_170029456.1\|2314560_2315931_+\|sensor-histidine-kinase-N-terminal-domain-containing-protein	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	2.88543e-59
NZ_CP051857.1\|WP_170029454.1\|2313257_2313899_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.12991e-08
NZ_CP051857.1\|WP_170029470.1\|2329009_2329852_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	3.49789e-15
NZ_CP051857.1\|WP_170029461.1\|2318683_2319313_+\|paraquat-inducible-protein-A	gnl\|CDD\|225542	COG2995, PqiA, Uncharacterized paraquat-inducible protein A [Function unknown].	1.133e-64
NZ_CP051857.1\|WP_170029457.1\|2315934_2316321_-\|VOC-family-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.43512e-53
NZ_CP051857.1\|WP_170029467.1\|2325215_2325707_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.41338e-13
NZ_CP051857.1\|WP_170029458.1\|2316514_2317420_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176104	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily. This family includes the C-terminal substrate domain of a putative LysR-type transcriptional regulator from the plant pathogen Pseudomonas aeruginosa PAO1and its closely related homologs. The LysR-type transcriptional regulators (LTTRs) are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of N2 fixing bacteria, and synthesis of virulence factors, to a name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.62984e-92
NZ_CP051857.1\|WP_170029462.1\|2319312_2320953_+\|MCE-family-protein	gnl\|CDD\|225553	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].	5.50035e-141
NZ_CP051857.1\|WP_170029472.1\|2331442_2332936_+\|aldehyde-dehydrogenase	gnl\|CDD\|143430	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.	0
NZ_CP051857.1\|WP_170029466.1\|2324476_2325061_-\|biliverdin-producing-heme-oxygenase	gnl\|CDD\|225770	COG3230, HemO, Heme oxygenase [Inorganic ion transport and metabolism].	1.44258e-50
NZ_CP051857.1\|WP_170029469.1\|2327354_2328731_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	4.46366e-43
NZ_CP051857.1\|WP_170034138.1\|2323910_2324279_-\|hypothetical-protein	gnl\|CDD\|367272	pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein. The N-terminal half of this protein corresponds to the capsid protein.	0.00392498
NZ_CP051857.1\|WP_170029468.1\|2325780_2327139_-\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
NZ_CP051857.1\|WP_170029460.1\|2318090_2318687_+\|paraquat-inducible-protein-A	gnl\|CDD\|377345	pfam04403, PqiA, Paraquat-inducible protein A. Paraquat is a superoxide radical-generating agent. The promoter for the pqiA gene is also inducible by other known superoxide generators. This is predicted to be a family of integral membrane proteins, possibly located in the inner membrane. This family is related to NADH dehydrogenase subunit 2 (pfam00361).	3.20053e-38
NZ_CP051857.1\|WP_170029464.1\|2321789_2323568_-\|phosphoethanolamine-transferase-CptA	gnl\|CDD\|333729	NF012179, CptA, phosphoethanolamine transferase CptA.	0
NZ_CP051857.1\|WP_170029463.1\|2320964_2321498_+\|membrane-integrity-associated-transporter-subunit-PqiC	gnl\|CDD\|377153	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component. ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.	4.93607e-21
NZ_CP051857.1\|WP_170029471.1\|2329894_2331277_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|171472	PRK12403, PRK12403, aspartate aminotransferase family protein.	0

>NZ_CP051857.1|WP_170029463.1|2320964_2321498_+|membrane-integrity-associated-transporter-subunit-PqiC
MQRLRNVCGAGLLALLWGCSTPNNYHTLVPSEPLRDGGQRIQVARVAVPPQVDRPQLVVRQGQSGLAILETEWWGANLVDELRSALQDQLGGPVGGSKALLRVDVQRFDMVPGRYASLEALWRLSQPGRDELTCRTSLQTPADNSIASLVNAHQANLRKLAEAVRSSARQGRCSQPA
>NZ_CP051857.1|WP_170029462.1|2319312_2320953_+|MCE-family-protein
MGQQTDNHDGAGQVEVRTRRWNVSLVWIVPIVAILIGASLVVRNWMQQGPVIAIAFHTGEGLVAHKTQVKYRSVVIGEVTTVELADDKKSVVAKVQLSNDARAFATQGARFWVVRPRIGVGGVSGVDTLFSGSFIGADAGESNVPEKSFVGLELPPPITYDEKGKRFVLTASDLGSLDVGSSIYYRKIPVGEVVSFALQGDGKGVEIGVFVQAPYDSFVTADTRFWNASGVDMQIGANGLKVDTESLSSILVGGLAFGSPDFAPQAEPAADQARFQLFADRDTALAPPSGQAQYLQLRFDQAMRGLSVGAPVEFKGVEFGRVTSIKLDYDAARQAFPVVVDAVIYPQRLGPVHRKMLAAFKHSEGDLDGARRLIGTFVEHGLRAQARSGNLITGQMFISLDFYPDAPKVAFDRTADPITIPTLPGSLEQLQEQLQRVVERISKLPLESIASNLDGSLRELRASLKQFNGQTLPEVQVALDEMHKTLRTANSAIAEDSPQRERMGETLDELERMSRSLRDLADYLGRHPESLIRGRPKAAGAAGLEP
>NZ_CP051857.1|WP_170029461.1|2318683_2319313_+|paraquat-inducible-protein-A
MNTPASADDLGLCLCHGCGQACPLGSGAHTCSRCGAPIHRRKTNAISRGWAFLLAALIFYIPANLLPVMHTEMLGSGSESTIGGGVLEFWEAGAWDIALIIFIASVGVPAIKFFSLGLLLYTAQRGSTWACRQRSQLYRFVELIGYWSMLDVMVVALVAALVQLRGLGTIEPRVGILFFGMVVVLTMLSAMSFDPRLIWDRHTNEGRPH
>NZ_CP051857.1|WP_170029460.1|2318090_2318687_+|paraquat-inducible-protein-A
MSQTQHLIICEYCDTVYHRAPLLKHQRALCQRCGGVLYRYTSLTVQQRLALSVTGGILLVFANFYPVMTIGMQGLTHSATLWDSVQILSHGSITFIALVMALSIIVAPVLQIGLLCWLLGFALAGQRAPGFAVCMRSLEGLRPWSMLEVCLLGALVAVIKLAGLLEVIPGIGLLALAALSMLIIHVAGKDIRDLWDQP
>NZ_CP051857.1|WP_170029459.1|2317468_2317942_-|hypothetical-protein
MRRSTWSYLLVLLCVAPAALAQSVVPLKGQSSQQMQLDINDCNTVATNAANSAATSNDPHVGGRVRGAAAGAVAGAAGAQVRGNQHDALYDRASDDAKQAYRQNRAGEVAAAGAAVGGMRQRQERRQDRRGQDEAQAQAHASAYAGCLQGRGYQVNP
>NZ_CP051857.1|WP_170029458.1|2316514_2317420_+|LysR-family-transcriptional-regulator
MAAYTLRQLKYFVTTVEAGSVAEASRQLYIAQPSISTAIKSLEESFGVQLFIRHHAQGVSLTPSGKRFYAKTKSLLQMAHEFEQNALADNDTVAGQIDIGCFETVAPLYLPRLIAGFRQRYPGVDIRLRDGEQQDLIQGLTAGTFDLAFLYDHDLDGTIEAEPLMPAQKPYVLLPEQHRFAGQAQVSLRDLCPEPMILLDVAPSRTYFVSLFNEMGLTPNIVFSSPSIEMVRGMVGQGFGFSLLVTRPHSPYTYDGQRLAMVDIAEPVALSGLAAAWLKRVQLTKPAQLFVEFCREQLATF
>NZ_CP051857.1|WP_170029457.1|2315934_2316321_-|VOC-family-protein
MKIVVTSILVDDQAKALAFYHYVLGFEPKHDTPMGRHRWLTLTSPNDPNGVELLLEPDAHPAAKAYKAALKQDGIPATSFGVRDIQAEYTRLCAAGVQFTQPPTAVGPVTVAVFDDTCGNLIQIAQKH
>NZ_CP051857.1|WP_170029456.1|2314560_2315931_+|sensor-histidine-kinase-N-terminal-domain-containing-protein
MTSLRQRTLWRVMLLLLLGSGLLALYNYHDSRHEIAEVYDAHLAQNARLLQGIMSLPVQEQSRGELYRAFDEALSKAGRHRVGHPYESKLAFQVWADDGTLLVHTPSAPQLQQPPRAPGFADVVAGTQRWRSFVLPVPEKRWVIWVGERSDVRIDLVERIVRHTLLPFLFGSLALAVLVWAAIGWGLRPLQNMARVIRARHADSLEPLQLVPLPKELEPMQAAINRLLGQIGDLLSREHRFIADAAHEMRTPLAVLRLHAQNALNAASSAERDKALGFLMGGVDRLARVVNQLLTLARLEPRPGRRDWPQVDLQALVAETLADLTPWILERGLEPSLDIAAGDYQLHTDAGALGIALQNLVTNAVDHSPPGGRITVTLQREGQALLVSVDDEGPGIAVADQQRVFERFYSKGSANGAGLGLSIVSTIMTRLGGSVQLRNQLPHGLRATLRLPVAPG
>NZ_CP051857.1|WP_170029455.1|2313901_2314564_+|response-regulator
MRLLLVEDDVALGEGICDGLRREGYTLDWLQDGASALHALCHEAFDLAILDLGLPRLDGIELLRRLRAAGNSLPVLVLTARDATDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSSGRARLLIEHAGVCLDPATQQVHYQGQQVVLTPKEYLLLHELLAQPGKVFTRERLTQLLYGWDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVEGKA
>NZ_CP051857.1|WP_170029454.1|2313257_2313899_+|tetratricopeptide-repeat-protein
MKRLLLASLLAIAPFTWALDQNGTQQLAAIQQRWAVIRYELPEAQRAGAFEALAVQSAALVRQHPGAAEPLIWDGIVNSSWAGATGGLGALGKVKAARASLEQALAADPKALQGSAYTSLGALYDQVPGWPLSFGDQAKAEGLLRQALAINPDGIDSNYFWADHLYRLKRYDEARAALQKALQAPPRPGRELADQGRRGEIDALLKAIKDKQD
>NZ_CP051857.1|WP_170029464.1|2321789_2323568_-|phosphoethanolamine-transferase-CptA
MSHTPSPSSPKRVDWAGLGWLLLFFWYFSGVTQALLLFSGTTGFAGFRDALFLSSLWLAPVLLLPRFTRATAAVIGLVLWAASLVGLSYFGIYRQEFSQSVIFVMFESNTAEAGEYFSQYFSAWLGLALLLYTLVAVLLWKRVRPVRLPLRSRLPVVALLLLANLVYPFYKQMVTQQRSFADAAEKVQQRMEPAVPWQLLVGYRQYRQQLDNMQQLLAQNAALPPLQNLQDSSGAAPRTLVLVLGESTTREHMHLYGYNRDTTPNLDALAASDEGLTVFRNVVSPRPYTIEVMQQILTFGDEQNPDRFLTDPSLINLLKQAGYKTFWITNQQTMTKRNTMLTTFSQQTDAPVYLNNQRNQNASQYDDVVLAPFEKALQDPAPNKFIIVHLLGTHMDYRYRYPDDYAHFTDRQGAPGVLTPEQVETYNFYDNAVRYNDYVVSSLIKRYSATTPNGFLLYLSDHGEDVYSSGNHDRLGRNEGAPTRPMYTIPFLLWTSPSWRAEHPRDLQAMADRPYSSSHLIHTLSDLAGLSYDRYEPAKSLVSPQFVVAPRWIGDPYRKDGLREFDRLPQDKAERVQQTVSNSQAQNGAGPD
>NZ_CP051857.1|WP_170029465.1|2323722_2323869_+|DUF2986-domain-containing-protein
MNRRKKIKQLLQAHAKKASAKLAPRKPKYICKADRLKMEAEAAADTAS
>NZ_CP051857.1|WP_170034138.1|2323910_2324279_-|hypothetical-protein
MLLGLFSLAAMGTASATPMKPSVAAAPAVQSPLQPAGNPWAKLASVADEQPATLLAHGDDRWHDHRSDWRREQWRREQARRDWERRRDWEYRRDWERRRDWERRHERAMHQRYHDDYRYYRR
>NZ_CP051857.1|WP_170029466.1|2324476_2325061_-|biliverdin-producing-heme-oxygenase
MASVPLSLAEPGRCKRLKAASSQAHDDVDQRVMAARPFESRERYARFLQVQHRFHGSLLALYRDEQLNLLLPGLAQLSRAAAVEHDLGALGLAVPAPPAQVCASPAQALGWLYCSEGSNLGAAFLLRQAQRLGLDAGLGACHLAPPPQGRALPWRQFVARLDGLSLDAQQEAEVVAGVIAAFGSYQAHLRAEFA
>NZ_CP051857.1|WP_170029467.1|2325215_2325707_+|GNAT-family-N-acetyltransferase
MSTPQFRTPTAADAERCYAIEIGAYEGDEAATLEKIRTRIAQYPQGFLVLEQAGEIVGFINSGCAHQVEMADEAFKELVGHDPQAPNVVIMSVVVDPAHQGQGYARRLMDEFVRRMKAAGKQTIHLMCKQQHVPLYQKMGYQYVQPSPSEHGGMAWHEMVMAL
>NZ_CP051857.1|WP_170029468.1|2325780_2327139_-|8-oxoguanine-deaminase
MPKTLLVKNATLLVTMDGERREISNGGLFIEDNLIRQVGASDTLPQHADVVLDMAGKVVIPGLVNTHHHMYQSLTRVVPAAQDGELFNWLTNLYPIWARLTPEMIAVSTQTAMAELILSGCTTSSDHLYIYPNGCKLDDSIHAADEIGMRFHAARGSMSVGRSQGGLPPDAVVEKEADILKESQRLIEDYHDASHGAMRRIVVAPCSPFSVSRDLMREAAVLARQYGVSLHTHLAENLNDIAYSREKFGMTPAEYAEDLGWVGHDVWHAHCVQLDQHGIELFARTGTGVAHCPCSNMRLASGIAPVRKMRDHGVPVGLGVDGSASNDGASMIGEVRQALLLQRVGFGPDAMTAREALEIATLGGAKVLNRNDIGALAPGMVADFVAFDLGHVAYAGGHHDPLAALVFCTPTQVHTSVINGRVVVQDGQLLTVDLPRVLERHNQLAQQLVSGG
>NZ_CP051857.1|WP_170029469.1|2327354_2328731_-|APC-family-permease
MHTTTSTAHSPAAHAPSPAPTGRFRTSMGMTALILFGLAYMVPLAVFTTYGLVTQMTKGHLPTAYLLTLAAMLLTAYSYGRMVQAHPYSGSVYTYTRKAFGSHIGFITGWTLLLDYIFLPLLSYLLIGIYMAEYFPAIPAWVWVLGSIALVTFLNLIGIESITRVNWLLVVLQLVFIVVFVALSIRNLGSQGEPLSLLAPFHHDGFSVPLIMTGAAVLCLSFLGFDAVSTMAEETSNPTYRIPMAILAVSLIGGLLFLVVSYCAQMVFPDWGNFADPDSASVDVMRRVGGELLVTAFTATYVAGCFASAMVSQASVSRVLFAMGRDGALPRAFGQLLTKKRVPAAAIVLVSLLSLVALVITLDTVANMISFGALFAFSAVNLAVVKHYLVDQRLRGARNYLLYGVVPGLGFLSTLWLWSSLTHLSFTIGLCWMGVGLMVLLGLTRAFRVKLPELQMAE
>NZ_CP051857.1|WP_170029470.1|2329009_2329852_+|helix-turn-helix-transcriptional-regulator
MTHRLLTQQWFEHQAKVTEAIGRPGFAASLFAALGVIHPIQATTVYLYPHHGMPSALFEQDDNAPWQPEGNVSRYLSGFYLLDPFYGACVEQVESGCYGLFEVAPDHFEVSEYYQSFYRHSHLQDELNYILQLLPGHSLAVSLAFTDKLDGHSRALFGCITPWVLAVLGRHFAGLDSRAGRFENILEQRIHAALNNFGSSLLTERECRIAQLILRGHSTRSLAERLGVSEDTIKSHRKNVYAKLDIGTQSELFSLFIDALANAQGVLGKDPLESYMGKLR
>NZ_CP051857.1|WP_170029471.1|2329894_2331277_+|aspartate-aminotransferase-family-protein
MNAPFAPQRQTRDYQASDAAHHIHAFLDQKALNAEGPRVIVGGERLHLWDSEGKRYLDGMSGLWCTQLGYGRRDLTAAAAAQMDQLAYYNMFFHTTHPAVIELSELLFSLLPAHYSHAIYTNSGSEANEVLIRTVRRYWQVVGQPAKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYAEGGDLSPAEFGRRCALQLEEKILELGAENVAGFIAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEYFGFQPDTLSIAKGLTSGYVPMGGLVLGKRIAEALVERGGVFAHGLTYSGHPVAAAVAIANLKALRDEGIVRQVRDDTGPYLQRILREVFADHPLIGQVQGAGLVAALQFAEHKPTRKRFANENDLAWQCRTFGFEEGVIIRSTLGRMIMAPALVANHSELDELVEKTRIAVDRTARLVGKF
>NZ_CP051857.1|WP_170029472.1|2331442_2332936_+|aldehyde-dehydrogenase
MYTLEFWQQRASGLHLPARALIDGKPVNAQDGATFAAINPASNAVLAQVAACGQAEVDLAVASARRAFEHGPWPRMAPVERKKVLLRLAELIMAQREELALLDSLNMGKPVMDAYHIDVPGSAQVFAWYGEALDKLYDQVAPTAPNALATITREALGVVAAVVPWNFPLDMAAWKLAPALAAGNSVVLKPAEQSPFSALRLGELALQAGVPEGVLNVLPGLGEQAGRALGLHPDVDCLVFTGSTQVGKYFMQYSAQSNLKQVWLECGGKSPNLVFETCQDLDLAAEKAAFGIFFNQGEVCSANSRLYVQRSIHDAFIERLQAKARQWLPGNPLDPASRAGAIVDAQQTGRIEAAIARAGQEGARRVCGGRRLTIDGSDNYIEPTIFAGVEGHMSLAREEVFGPVLAVSVFDTEEQAVRLANDSIYGLAASLWSDDFNQVHRVARALKAGTVSVNTVDALDVAVPFGGGKQSGFGRDLSLHSFDKYSQLKTTWYQLRA

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Crispr_ID: NZ_CP051857_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051857_6

2864240-2864329

Orphan

Consensus_repeat	Method
TTCGCGGTCATTGGCGAAATTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051857_6

>merge|NZ_CP051857|6|2864240-2864329|CRISPRCasFinder
TTCGCGGTCATTGGCGAAATTGCCGCCGGAGGCCTGGCCACCTTTCTGCCCGGCGCGGGACGCTTTTTCGCGGTCGTTGGCGAAATTGCC

>NZ_CP051857|6|6|2864240-2864329|CRISPRCasFinder
TTCGCGGTCATTGGCGAAATTGCC	GCCGGAGGCCTGGCCACCTTTCTGCCCGGCGCGGGACGCTTT
TTCGCGGTCGTTGGCGAAATTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051857.1\|WP_170029897.1\|2858173_2858482_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NZ_CP051857.1\|WP_170029911.1\|2874957_2875182_-\|metallothionein	unknown	unknown	gnl\|CDD\|366903
NZ_CP051857.1\|WP_170029910.1\|2874385_2874814_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170029905.1\|2869927_2870314_-\|low-affinity-iron-permease-family-protein	unknown	unknown	gnl\|CDD\|377225
NZ_CP051857.1\|WP_170029894.1\|2855581_2856340_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP051857.1\|WP_170029903.1\|2868879_2869278_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240025
NZ_CP051857.1\|WP_170029893.1\|2855291_2855573_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	unknown	unknown	gnl\|CDD\|237504
NZ_CP051857.1\|WP_170029907.1\|2871419_2872205_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP051857.1\|WP_170029899.1\|2860080_2861313_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP051857.1\|WP_170029904.1\|2869325_2869877_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|223811
NZ_CP051857.1\|WP_170029908.1\|2872201_2873404_+\|cardiolipin-synthase-ClsB	unknown	unknown	gnl\|CDD\|236888
NZ_CP051857.1\|WP_170029900.1\|2861351_2863409_+\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	unknown	unknown	gnl\|CDD\|236931
NZ_CP051857.1\|WP_170029898.1\|2858478_2860041_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP051857.1\|WP_170029906.1\|2870505_2871423_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|376655
NZ_CP051857.1\|WP_170029909.1\|2873403_2874351_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NZ_CP051857.1\|WP_170029902.1\|2864649_2868789_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|214534
NZ_CP051857.1\|WP_170029895.1\|2856326_2856860_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP051857.1\|WP_170029896.1\|2856875_2857952_+\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	unknown	unknown	gnl\|CDD\|131215
NZ_CP051857.1\|WP_170029901.1\|2863762_2864032_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170027518.1\|2863565_2863736_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP051857.1\|WP_170029897.1\|2858173_2858482_+\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	6.6693e-36
NZ_CP051857.1\|WP_170029905.1\|2869927_2870314_-\|low-affinity-iron-permease-family-protein	gnl\|CDD\|377225	pfam04120, Iron_permease, Low affinity iron permease.	2.10568e-62
NZ_CP051857.1\|WP_170029894.1\|2855581_2856340_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	8.83381e-107
NZ_CP051857.1\|WP_170029903.1\|2868879_2869278_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240025	cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	3.66733e-43
NZ_CP051857.1\|WP_170029893.1\|2855291_2855573_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	gnl\|CDD\|237504	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional.	3.02118e-62
NZ_CP051857.1\|WP_170029907.1\|2871419_2872205_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	3.66462e-67
NZ_CP051857.1\|WP_170029899.1\|2860080_2861313_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	0
NZ_CP051857.1\|WP_170029904.1\|2869325_2869877_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|223811	COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.51384e-35
NZ_CP051857.1\|WP_170029908.1\|2872201_2873404_+\|cardiolipin-synthase-ClsB	gnl\|CDD\|236888	PRK11263, PRK11263, cardiolipin synthase ClsB.	0
NZ_CP051857.1\|WP_170029900.1\|2861351_2863409_+\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	gnl\|CDD\|236931	PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional.	0
NZ_CP051857.1\|WP_170029898.1\|2858478_2860041_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP051857.1\|WP_170029906.1\|2870505_2871423_+\|DUF72-domain-containing-protein	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	6.56464e-86
NZ_CP051857.1\|WP_170029911.1\|2874957_2875182_-\|metallothionein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	4.66474e-10
NZ_CP051857.1\|WP_170029902.1\|2864649_2868789_+\|PAS-domain-containing-protein	gnl\|CDD\|214534	smart00138, MeTrc, Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.	1.43014e-88
NZ_CP051857.1\|WP_170029895.1\|2856326_2856860_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	1.35169e-62
NZ_CP051857.1\|WP_170029896.1\|2856875_2857952_+\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	3.01728e-150
NZ_CP051857.1\|WP_170029909.1\|2873403_2874351_+\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	3.81049e-29

>NZ_CP051857.1|WP_170029901.1|2863762_2864032_-|hypothetical-protein
MPNPQLYIIDYRLHGKPRSFIIRLERMDNAEAWHWASCDAGIGIIPKFGREKIRKVSKPMAERYGVTEVSWRASGSKPGQSLEDPATTA
>NZ_CP051857.1|WP_170027518.1|2863565_2863736_+|hypothetical-protein
MNDKQWMGGGNAQDDWPELDPDARNDKVDDPDTDPNLTDDDQNRPGVPASDPESGA
>NZ_CP051857.1|WP_170029900.1|2861351_2863409_+|phenylacetic-acid-degradation-bifunctional-protein-PaaZ
MSAAPTLQSFIAGRWLGQHGAQALRSALDGHVLAYSHEERPDFAEAVDFARARGLASLMGMDFQQRAARLKALALYLAERKEQLYALSHHSGATRADSWIDIEGGNATLFSYAGIGSRELPSGNLVHEGPAMPLGKQGHFAGSHILVPRAGVAVHINAFNFPIWGMLEKFAPTFLAGMPCIVKPATSTSYLTEAVVRLMHASGLLPEGSLQLVIGSTGDLLDRLLGQDVVTFTGSADTAAKLRVTPNLVRNSVPFSAEADSLNCAILAPDVTPDSEEFELYIKEVVREMTTKAGQKCTAIRRAIVPAKHIDAVATRLRERLAKVVVGDPSLEGVRMGALASHDQQHDVAERVRSLLHSCDQLFGASDGFAPRGEGVAEGAFFAPTLLQARDPHAEGGAHDIEAFGPVSTLMAYDDLDEALVLAARGKGSLVATLVTAEHSIAAKAIPAAAAWHGRLLVLDHEAAKESTGHGSPLPQLKHGGPGRAGGGEELGGLRAVKHYLQRAAVQGSPSMLTAVTGEYVRGSAVIESEVHPFRRYFEQLRIGESLLTHRRTVTEADLVNFGCLSGDHFYMHFDEIAARESQFGKRIAHGYFVLSAAAGLFVSPGAGPVLANYGLDTLRFINPVGIGDTIQARLTCKRKIDQGKTSPLGQPQGVVAWDVEVTNQLGELVASYDILTLVLKMPGA
>NZ_CP051857.1|WP_170029899.1|2860080_2861313_+|OprD-family-porin
MNRTHFMSAAWLATLALPLPAMADFVGDSHARLELRNHYLNRDFRQSNAAQAKAEEWGQGFTAKLESGFTEGTLGFGIDAMGQLGIKLDSSRDRRNTGLLPFGPNSHEPVDDYSELGLTGKLRLAKSTLRLGTLQPILPVVVYNDTRLLASTFQGGLLTSQDLAGLTFNAGRLSKANLRDSSGRDDIGYGAASSDHLDFGGGSYAITAQTSVSYYYAKLEDIYRQQFVGLVDTRSLGEGLSLRSDLRYFDSREDGAERAGTIDNRNFNAMFTLGVRAHKFTATWQQMSGDSAFPFVNGGDPFTVNLVTYNTFTRAGLDSWQLRYDYDFVALGIPGLSFMTRYTDGRHAETATLSNGRERERDTDITYVIQSGPFKDVSLRWRNVTFRSGNGLTNAVDENRLIIGYTLALW
>NZ_CP051857.1|WP_170029898.1|2858478_2860041_+|cation-acetate-symporter
MNWTAISMFMVFVCFTLLVTRWAAMRTRSASDFYTAGGGLSGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQTPVRLTSAFGTLVVALMYLVAQMVGAGKLIELLFGISYLYAVMLVGVLMVAYVTFGGMLATTWVQIIKAVMLLSGTSFMAFMVLRHFGFSTEAMFASAVAVHAKGQAIMAPGGLLSNPVDAISLGLGMMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYLLLIVIGFGAIVMVGTEPTYRDATGAIIGGGNMVAVHLAQAVGGNLFLGFISAVAFATILAVVAGLALSGASAVSHDLYACVMRQGKASEQEEMRVSRIATLLIGLLAVILGLLFESQNIAFLSGLVLAVAASVNFPVLLLSMFWKGLTTRGAVCGSMAGLVSAVLLVVLGPAVWVNVLHHEKALFPYSNPALFSMSLAFLGAWAFSVTDNSARASQERGRYLAQFIRSMTGIGAAGASKH
>NZ_CP051857.1|WP_170029897.1|2858173_2858482_+|DUF485-domain-containing-protein
MTPERIESITNHPDFQHLVRRKRRLNGGLTLAMLVTYYGFVLLVAFSPSTLGQSLSGGVTTVGMLVGVLMVLLSFALTGIYVHRANNVLDPLNDKVKQECAQ
>NZ_CP051857.1|WP_170029896.1|2856875_2857952_+|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK
MSLFHSLTIKQVRNETRDAVSIAFDVPEHLRDAFRFTQGQYLVMRTQMDNEEVRRSYSICSAVQDGELRVAVKRVPGGRFSAFANDVLRAGQRLDVMPPSGSFFVPLDPARQGNYLAVAAGSGITPILSIIATTLASEPHSRFTLLYGNRSSSGALFRDKLEDLKNRYLDRLNLIFVFSREQQDVDLYNGRIDADKCGQLFSRWMDVASLDAAFICGPQAMTETVRDSLQANGLAKDRIHFELFAAAGSEARREAREAARQVDSALSHITVISDGRALTFDLPRNTQNVLDAGNAIGAELPYSCKAGVCSTCKCRVIEGEVEMDSNHALEDYEVAAGYVLSCQTYPVSDKVVLDFDQL
>NZ_CP051857.1|WP_170029895.1|2856326_2856860_+|phenylacetate-CoA-oxygenase-subunit-PaaJ
MQPGELIAGDRGARAPRGDDLARAWAVLAQVMDPEVPVVSVVDLGIVRDLGWRAGHLHLVVTPTYSGCPATEVIETDIRLALERAGFPAPELERRLTPAWTTDWISELGRERLRAYGIAPPQGSSSKRSLLGEAPQVCCPQCGSAQTELLSQFGSTACKALYRCRECLEPFDYFKCI
>NZ_CP051857.1|WP_170029894.1|2855581_2856340_+|phenylacetate-CoA-oxygenase-subunit-PaaC
MHKHDLIPYLLLLGDSALVQGQRLCEWCGRAPALEEELALMNVGLDLVGQARNWLEYAAELLADGRDADALAFRRDERAYRNLLLVEQPNGDFAVTMTKQFLYDAWHFAVLRGLVGSADERIAGIAGKALKEVTYHLRRSSEWVQRLGGGTEESRQRMLAAIPALWRFTVELTAGSDNEAQLAQAGIAADPASVGAAWRQQVCEVFSAVDLPLPKAASHFYLDGRKGLHTEHLGLLLVEMQCLPRAYPDATW
>NZ_CP051857.1|WP_170029893.1|2855291_2855573_+|1,2-phenylacetyl-CoA-epoxidase-subunit-B
MSVWTLYEVFVRSKHGLNHKHVGSVHAADAAMAIENARELYTRRSEGVSLWVVPSALITASSPDDKDPLFAPADDKVYRHASFYELPDEVGHM
>NZ_CP051857.1|WP_170029902.1|2864649_2868789_+|PAS-domain-containing-protein
MKSSANQPASPQNPNLSPSHLDFPVVGIGASAGGLEALCTLFRQMPADSGMAFVIVLHLSPDHQSVADRIIQETTAMPVRQVTEPVPIERNHVYVISPANRLSTNDGYLRVTPANRRRGDHVAIDLFFRDLADVHKDHAFCVVLSGSGADGAVGLSRIKEQGGVTLVQAPDDAQYDSMPRAAIDTGMVDIVLPAAEIPQKLLELWRNASQVKLPRIDDDTLPPALGSRAGDPQASEPLLEEILLQLRSVTGHDFQHYKRATVLRRIERRLHVTGQADLGAYLRYLEDHREEATALLADMLIGVTNFFRDREAFEALERHVLPQLVSEPEPTEGAGEIRIWSAGCSTGEEAYSLAMLACEQLAVEQRASQVQVFATDLDERAISIARGGSYPEAIVTDVPPSRLRQFFVKEDQHYRVRKEIREKVLFARHNLLSDPPFSQIGLIVCRNLLIYLDREIQQDILQMFHFALRPGGFLFLGSAESADLASELFAVVDKRNRIYRARDVSTLGRRSGRQLPGPDLTSPPQVARGQDKPGRKPVYAEVHHRALARRNPPSLIIDGEGTILHLSEGVGRFMQLAGGELSRNLLSLVLPSLRLALRSTLFQARQGTEAVTSRPVELGEGADRVQVEITVQPHKDEVSAGEYLLVVFEERAAGPSLPIAESLRQTDSMVLHNLEHELQRTRLQLQETIEQWEISSQELTASNEEMQAINEELRSASEELGTSKEELQSINEELLTVNFELKNKVEETDKVNDYLSNLIASTDIATVFVDRNLHIRWFTPRATDLFNMLPVDTGRSLLDITHRLDYPALAEDARTVAQGEHIIEREVGGHDQRWYLARLLPYRSSEQDSDGTVLTFIDISKSRAAEERVRLGEERMRVVAESTHDFAIILLDEQGLITDWNTGASLMFGHSKADVLGQHYRLIFTEEDRARGVPEQELHAARVNERDQDERWHVRKDGSRFYSSGEISQLKGSTLRGFVKIARDLTGHKRRHDEQSKQLAESQSSSHMKDEFFAIMSHELKHPLNLIQLNAEILRRLPTIAHSAAASKAVASIREAVNSQARIIDDLLDVARIRTGKLKLKTEAVDIRAILQGIHALVQSEQPTCNVLLELPADGLPLIIEGDSTRLEQVVWNLLNNALKFSPPGGLVRLVLSHDEAQVWLRVIDQGVGLTADSLEHIFDLFSQAAPQVGNHPREGLGIGLSLVRQLVEAHGGRVSADSPGIGQGCTFTVSLPCSDSGQRPAVAPADATTDGRLSGIRVLLVDDSPDVLEVMQQLLEMECAEVSAFSDPRQALEAAAAASYDIILSDIGMPVMDGHALIKALRGLSHLQHTPAIALTGYGASADQHKSRQSGFDRHLNKPVGYDELVEAIEALYGSVPY
>NZ_CP051857.1|WP_170029903.1|2868879_2869278_+|NUDIX-domain-containing-protein
MKPVKARATVICRHAKHAHKWLWVRKPKAPWTLPGGKVEPGETPVQAAERELLEETGLQAETMTLLMRHETPERMHYVFEAEFADAPHPTAQHEIADCCFAHIDQVPMLKDDIKLLIRSLLACDQATAASIR
>NZ_CP051857.1|WP_170029904.1|2869325_2869877_-|ATP-dependent-Clp-protease-proteolytic-subunit
MPRHIIHFTGPINSSTCGNLIGTCAKALQQGAELLQLNIATMGGECSYGFTLYNFLRGLPIPLHTHNLGTVESMGNILFLAGEHRTACAHSKFLFHPFHWTLHGSVDHSRMAEYAMSLDYDLRLYAQIVAERTEGSSEVLDVPRYLMAYPRILGPREALESGMIHAIDELPIEADACQWSVHA
>NZ_CP051857.1|WP_170029905.1|2869927_2870314_-|low-affinity-iron-permease-family-protein
MKFDRFAQWLANWTGRPQSFAIALLLIMAWALTGPLFDYNDTWQLVINTSTTIITFLMVFLIQNTQNRDNDELHIKIDELLRTTRRAHKALLDLEDMDPAELHALRKQYQRMGELEEGRQGRHDPPAE
>NZ_CP051857.1|WP_170029906.1|2870505_2871423_+|DUF72-domain-containing-protein
MSEVRIGISGWRYGPWRKDFYPKGLPQDDELAFASRAVNTIEINGSFYSLQTPERYRSWAQATPEDFVFSVKAPRYITHIRRLKNIEQPLANFFASGPLLLGDKLGPFLWQFPPSMKFDEALFQAFLERLPHDRAAARRCAEGCAERLQGNGGTAIEGNRRLRHAVEIRHESFLCEAFVQLLRKHQVALVVADSAGKWPYVEDVTADFVYMRLHGDVELYSSGYTSRALRRWKERIVHWSEGRQAEDAELIVPGPPPSHRPRDVYCYFDNDQKVHAPYDARRLLEKLHLDHHLMTEPGVEPEVDL
>NZ_CP051857.1|WP_170029907.1|2871419_2872205_+|endonuclease/exonuclease/phosphatase-family-protein
MNKTLPTPRCIIDKITAVHRLNVLTLNVHKGFTFFNRRFILPELREAVRATGADLVFLQEVHGSHQQHAIRHPAWPDTPQYEFLADSMWPQFAYGRNAVYPHGDHGNALLSKFPITHFENLDVSVHGNEQRGLLHCQLEVPGHEQVHAVCVHLGLREAHRQSQVKLLLELLDRLPAHAPVIIAGDFNDWRLKADAVLSRRLVEAFGERFGTPARSFPARMPLLRLDRIYLRNAMPCKAQVLSSYPWSHLSDHAPLAAEITL
>NZ_CP051857.1|WP_170029908.1|2872201_2873404_+|cardiolipin-synthase-ClsB
MKRPWVDGNSVELLINGEAFYPRVFEAIGQAREEVLLETFIIFDDKVGQQLQRVLIDAARRGVRVEVVADGYGTADLPGSFIAAMTDAGVSFHLFDPQPRLAGMRTNLFRRLHRKIVVIDGERAFIGGINYSADHLGDFGPMAKQDYAVEVTGPVVAQVHAVSRRLMSPVLEPPSEVRPVTAPTGDITAVLVERDNGQRSNAIEAYYLEALRNARRRVVVANAYFFPGYRLLRELRNAARRGVEVSLIMQGQPDMRWVRALSRLLYNYLLRDGVRIHEYCERPLHGKVALVDDEWSTVGSSNLDPLSLAFNLEANLFIRDRRFNQQLHQHLTSLANEQCKPVTLERMVRGYWWRAPLIFLCFHVIRHFPRIAGWLPAHRKRLKSLQPEVETQGNLHEGNT
>NZ_CP051857.1|WP_170029909.1|2873403_2874351_+|UPF0104-family-protein
MERKRWHTWAKRLFTLLFLVLIPVLLFTLARNLDWNEVRQSLLGYKPGSLAIGLAMALCSFLIFASYDLLARSYTGHTLPARQVLPVAFVCYAFNLNFTTWVGGVALRYRLYSRLGLDTPTITRILTLGLLTNWMGYMLLAGGVFALRLVELPSSWPVGTGGLQLIGFVLLAITLAYLLACGLAKKRTWQWRDHELTLPSLRLASCQVALGASNWAMMALLIDWLLPEQAFYPSVLGVLLISCVAGVVAHIPAGLGVLETVFLGLLHGQFGQGSLVAALLAYRTLYYLIPLVLAVMTYLILEKRAKAMRRREKTA
>NZ_CP051857.1|WP_170029910.1|2874385_2874814_+|hypothetical-protein
MRIAWVTLIVMSLVSGRVLAEACDVMTRSSSEAVRPVEQHTCYTYGNMPPEAINWSCSNQSKDMLSAEKRKVARCADGSVGSCIAPLTQEALANPKATGNDQPATRPALPKDARVVTYYYDTPSLGQARTDCERSNGIWQTH
>NZ_CP051857.1|WP_170029911.1|2874957_2875182_-|metallothionein
MNELRCACRECTCTVDAAPQDGKAYCCEACATGHRNGEPCRMPGCNCAQVAQPKESSVDNALDETFPASDPISP

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Crispr_ID: NZ_CP051857_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051857_7

3434187-3434298

Orphan

Consensus_repeat	Method
TTCCACTGGCATTGGAAAAGTGTGGAGTACCTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051857_7

>merge|NZ_CP051857|7|3434187-3434298|CRISPRCasFinder
TTCCACTGGCATTGGAAAAGTGTGGAGTACCTGTAGCAGCGGGCTTGCCCGCGAAGAGATGCCCGCTCCCACCAGGTTTTCCACTGGCATTGAAAAAGTGTGGAGTACCTGT

>NZ_CP051857|7|7|3434187-3434298|CRISPRCasFinder
TTCCACTGGCATTGGAAAAGTGTGGAGTACCTGT	AGCAGCGGGCTTGCCCGCGAAGAGATGCCCGCTCCCACCAGGTT
TTCCACTGGCATTGAAAAAGTGTGGAGTACCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051857.1\|WP_170030417.1\|3425879_3426449_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|335993
NZ_CP051857.1\|WP_054884952.1\|3436023_3436587_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
NZ_CP051857.1\|WP_170030433.1\|3444240_3444891_-\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_CP051857.1\|WP_170030418.1\|3427126_3428410_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP051857.1\|WP_170030419.1\|3428531_3429218_-\|peptidase-C39-family-protein	unknown	unknown	gnl\|CDD\|239109
NZ_CP051857.1\|WP_170030434.1\|3444968_3445328_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170030423.1\|3430897_3431791_+\|transcriptional-activator-NhaR	unknown	unknown	gnl\|CDD\|176120
NZ_CP051857.1\|WP_170030420.1\|3429440_3429617_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170030430.1\|3440017_3440542_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP051857.1\|WP_170030424.1\|3431897_3433109_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP051857.1\|WP_170030421.1\|3429745_3430498_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP051857.1\|WP_170030432.1\|3443329_3444244_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225797
NZ_CP051857.1\|WP_170030431.1\|3440739_3442095_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NZ_CP051857.1\|WP_170030429.1\|3439219_3439957_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP051857.1\|WP_170030426.1\|3433897_3434086_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170030427.1\|3434334_3435897_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
NZ_CP051857.1\|WP_170030425.1\|3433245_3433893_+\|YceH-family-protein	unknown	unknown	gnl\|CDD\|377312
NZ_CP051857.1\|WP_170030422.1\|3430526_3430766_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_013973181.1\|3442191_3443031_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP051857.1\|WP_170030428.1\|3436726_3439156_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729

Protein	Function_ID	Function_description	E-value
NZ_CP051857.1\|WP_170030417.1\|3425879_3426449_-\|SPOR-domain-containing-protein	gnl\|CDD\|335993	pfam05036, SPOR, Sporulation related domain. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.	6.36731e-05
NZ_CP051857.1\|WP_054884952.1\|3436023_3436587_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	2.89659e-140
NZ_CP051857.1\|WP_170030433.1\|3444240_3444891_-\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	2.82798e-23
NZ_CP051857.1\|WP_170030418.1\|3427126_3428410_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	4.99184e-77
NZ_CP051857.1\|WP_170030419.1\|3428531_3429218_-\|peptidase-C39-family-protein	gnl\|CDD\|239109	cd02549, Peptidase_C39A, A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are lacking the nucleotide-binding transporter signature or have different domain architectures.	1.9558e-30
NZ_CP051857.1\|WP_170030423.1\|3430897_3431791_+\|transcriptional-activator-NhaR	gnl\|CDD\|176120	cd08429, PBP2_NhaR, The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold. NhaR is a positive regulator of the LysR family and is known to be an activator of the nhaA gene encoding a Na(+)/H(+) antiporter. In Escherichia coli, NhaA is the vital antiporter that protects against high sodium stress, and it is essential for growth in high sodium levels, while NhaB becomes essential only if NhaA is not available. The nhaA gene of nhaAR operon is induced by monovalent cations. The nhaR of the operon activates nhaAR, as well as the osmC transcription which is induced at elevated osmolarity. OsmC is transcribed from the two overlapping promoters (osmCp1 and osmP2) and that NhaR is shown to activate only the expression of osmCp1. NhaR also activates the transcription of the pgaABCD operon which is required for production of the biofilm adhesion, poly-beta-1,6-N-acetyl-d-glucosamine (PGA) .Thus, it is suggested that NhaR has an extended role in promoting bacterial survival. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.42761e-122
NZ_CP051857.1\|WP_170030429.1\|3439219_3439957_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	2.83294e-63
NZ_CP051857.1\|WP_170030430.1\|3440017_3440542_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	5.7235e-21
NZ_CP051857.1\|WP_170030424.1\|3431897_3433109_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP051857.1\|WP_170030421.1\|3429745_3430498_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.09486e-75
NZ_CP051857.1\|WP_170030432.1\|3443329_3444244_-\|c-type-cytochrome	gnl\|CDD\|225797	COG3258, COG3258, Cytochrome c [Energy production and conversion].	3.22244e-114
NZ_CP051857.1\|WP_170030431.1\|3440739_3442095_-\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NZ_CP051857.1\|WP_170030427.1\|3434334_3435897_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
NZ_CP051857.1\|WP_170030425.1\|3433245_3433893_+\|YceH-family-protein	gnl\|CDD\|377312	pfam04337, DUF480, Protein of unknown function, DUF480. This family consists of several proteins of uncharacterized function.	1.87232e-74
NZ_CP051857.1\|WP_013973181.1\|3442191_3443031_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.61816e-156
NZ_CP051857.1\|WP_170030428.1\|3436726_3439156_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0

>NZ_CP051857.1|WP_170030426.1|3433897_3434086_-|hypothetical-protein
MTLISREPWWLVPPKPGQQEQDLHWGYLEIYADGRTVFVDQRPTDRELAERKSCRNFPDPEP
>NZ_CP051857.1|WP_170030425.1|3433245_3433893_+|YceH-family-protein
MSEHQTAGEGRFNSIEIRILGALIEKQATSPESYPLTLNALVLACNQKTSREPVMNLTQGQVGQALRALEGQDMARLQMGSRADRWEHRVDKALELVPAQLVLMGLMFLRGPQTLNELLTRSNRLHDFDDIEQVQHQLERLIARGLALHLPRQAGQREDRYTHALGDPAEIEAILAARQQEGSPRSSAGSVSEERIEALEARIAALEARLAALEG
>NZ_CP051857.1|WP_170030424.1|3431897_3433109_+|serine/threonine-transporter-SstT
MTPVLRFINRTSLVTQIVIGLIAGIALALLAPAIAGDMAFLGKVFVSALKAVAPVLVFILVMASIANHRHGQETHIRPILWLYLLGTFGAAVVAVVASMLFPSTLALSAGEASLSAPGGIGEVLQNLLLSAVDNPINALLKANFIGVLTWAIGLGVALRHAGETTRKVVEDLSTGVTLIVRVVIRFAPLGIFGLVSATLAQSGLDALLGYLHLLAVLIGCMLFVALVMNPLIVFWKIRRNPFPLTLLCLRESGITAFFTRSSAANIPVNLALSERLGLHEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIVVDMPTAVLLSVVAAVCACGASGVAGGSLLLIPLAASLFGIPSEIAMQVVAVGFIIGVLQDSAETALNSSTDVLFTAAACQAEDRRNA
>NZ_CP051857.1|WP_170030423.1|3430897_3431791_+|transcriptional-activator-NhaR
MLNYRQLHYFWAVAKTGSIARASEQLNLTPQTISGQISLFEQTYGLELFQRVGRQLELTETGRQALVYAEQMFQLGSELEAMLQAGPQEQILFRVGVADVVPKSIVYRLLAPTMELDDVLRINCREDKLERLLADLAIQRLDLVISDSPMPSHLDIKGYSQKLGECGLSFFATPALARQHAGPFPGCLQDAPLLIPGQETVVRSRLLRWLGEQQVQPRIVGEFDDSALMQAFGQSGSGIFVAPSVIAEEVCRQYGVQLVGQTEAVHESFYAISVERKVKHPGIVAITEGARRELFHW
>NZ_CP051857.1|WP_170030422.1|3430526_3430766_-|hypothetical-protein
MLQFKSIGTPLVLALALFALAGCEQAEKSAQQMLDQAAQSAKQAIDDTNKAAQQALSEAIGREGHAPEDADKHKDTQEI
>NZ_CP051857.1|WP_170030421.1|3429745_3430498_-|TerC-family-protein
MEYLLELVASPTAWVALATLVAMEVVLGIDNLIFISILTNKLPVEYRSKARRIGISMALVMRLALLSTVAWIVQLTDPVFEVFGNAFSWKDVILIAGGLFLLWKATKEIHENVDPHGAKEEAKISSTVTLGFAAAIFQILLLDIVFSVDSIITAVGMTEHLPIMIIAVITAVIVMMVAADPLANFINDNPTVVMLALGFLIMIGMTLIAEGFGAHVPKGYVYAAMAFSTAIEILNILARRARLKREAAQG
>NZ_CP051857.1|WP_170030420.1|3429440_3429617_+|hypothetical-protein
MSLTVAILMLVGMWLSVAAAMLWGVMRIVRRHSHHHLPPQAPARAQPAHRARRHAGVH
>NZ_CP051857.1|WP_170030419.1|3428531_3429218_-|peptidase-C39-family-protein
MEQDSFKSAILSPRRLLLACLMAASLAGCAGTPSASLNGLPQRVEISSVPFYRGNANHSGAMALAAVLSQQGAPITPGLLDKPLNLPQGADALDSSIPRVARDYGMVVYPLDKQLDALLTQVAAGNPVLLRYEDGAAWWGEPRYAVLIGYDRYKQRVLLRSGMHRRQLMAFDDFASAWASQGSWAVLVQPPRQLPAQVDRQRWLQAADELARAGQEIAAKQAVSSLNK
>NZ_CP051857.1|WP_170030418.1|3427126_3428410_+|FAD-binding-oxidoreductase
MANTPYPQSYYAASANPVPPRPALQGEVETDVCIIGAGYTGLSSALFLLENGFKVSIVEAAKVGFGASGRNGGQIVNSYSRDIDVIERTVGPKQAQLLGHMAFEGGRIIRERVAKYNIQCDLKDGGVFAALTSKQMGHLESQKRLWERFGHNQLELMDQKRIREVVACDNYVGGMLDMSGGHIHPLNLALGEAAAVESLGGIIYEQTPAVRIERGANPVVHTPQGKVRAKFIIVAGNAYLGNLVPELASKSMPCGTQVITTEPLGEELARTLLPQDYCVEDCNYLLDYYRLTSDKRLIFGGGVVYGARDPANIEAIIRPKMLKAFPQLKNVKIDYAWTGNFLLTLSRLPQVGRIGDNIYYSQGCSGHGVTYTHLAGKVLAEAMRGQAERFDAFAGLPHYPFPGGQMLRVPFSALGAWYYSLRDRLGF
>NZ_CP051857.1|WP_170030417.1|3425879_3426449_-|SPOR-domain-containing-protein
MRKLAVVMAVLALAGCENEVEGVHKQVAEHLHNPNTAKFGNVRIDTQGTICGQVRGKDDAGQYEPYRSYVAIKRDGQYEIIVDDSGNNLRIREMCGGADLQRRAEALAGQPAPQGWDVEVIQGANMGALSDMTARLIEKGIPSSVEYRNGKPVVLMGPFPTREEAEARQAEVMAKLGTDSVVIQHGAAR
>NZ_CP051857.1|WP_170030427.1|3434334_3435897_-|alkyl-hydroperoxide-reductase-subunit-F
MLDATLKSQLKTYLERVTQPIEIVASLDDGAKSRELHDLLVEIAGLSNLITLRVDGDDARRPSFSLNRPNGEISLRFAGIPMGHEFTSLVLALLQVGGHPSKASAEVIEQIQALEGEFTFETYFSLSCQNCPDVVQALNLMAVLNPNVRHVAIDGALFQAEVESRKIMAVPSIYLNGEVFGQGRMGLEEILGKIDSNAGARQAEKINAKDAFDVLVVGGGPAGASAAIYAARKGIRTGIAAERFGGQVLDTLAIENFISVQETEGPKLATALEEHVKQYDVDIMNLQRGEALIPATDGGLHEVRLAGGASLKAKTVILATGARWREMNVPGEQQYRARGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVAQVTLIEFDSQLRADAVLQRKLHSLPNVKVITSALTTEVLGDGEKVTGLRYQDRTTEQQHEVALEGIFVQIGLLPNTDWLKGTVELSPRGEIIVDAKGQTSIPGVFAGGDVTTVPYKQIVIAVGEGAKASLAAFDHLIRTSAPA
>NZ_CP051857.1|WP_054884952.1|3436023_3436587_-|peroxiredoxin
MPIINSQVKPFNATAYHKGEFVQVSEADLKGKWSVVFFYPADFTFVCPTELGDLADNYAEFQKLGVEIYGVSTDTHFTHKAWHDTSETIGKIQYPLIGDPTHVISRNFDVLIEEAGLADRGTFVINPEGQIKIVELNDGGVGRDAAELLRKVKAAQYVAAHPGEVCPAKWKEGEATLAPSLDLVGKI
>NZ_CP051857.1|WP_170030428.1|3436726_3439156_-|fimbrial-biogenesis-outer-membrane-usher-protein
MSGLLATPASAVEFDAGLLRQGTSADLSRYEHDAIVPEGTYSLDVTLNQQWLGRHLVPLRVQGQSDQATPCYSEALLQKLGVDLRRLGRQSADRLAQDGACAGLGSIVADATEALDFADLKLDLSIPQQALRRLPSGYLPAENWDSGVTAGFFDYRLNLYEQHDLEQGDATRQAYLGVRSGFNIGAWYWRHEGSWQASSGIPSRYQATATSLQRDIPAWAAQLTIGDSYSRSDVFESSAMRGLLLGSDQRMLPEQQRGFAPVVRGVANSVALISIRQRGVLIHESTVAPGPFEIDDLYANDLQDDLEVTLREADGSVRTFIQPYAAAPLALRPGARRFELASGVWRQAYGRSGPGFVQGSWQQGLDNHLSVHGGTWLAEDYLASAMGVAMNTGLGALGLTGYHASAEPARHRQVRGQAWRLSWRQRLSATDTDLSATLIRSEGPGYYSFNDYARAVEGARIDPLRWQAGLGVDQPVGARGGRFTLRASLRQRWASRGRSESYSVGYNNHIGSLSYGINLSREQAVAGHAVDALMLNASLPLGERRRSSLSTALNSDSRGHGSTSVRWRGVSGEHGQWGHGLALVRQEGERADSGFDANLQHRGASGDIQGSLSSRRGYRQATLGAQGAVVAHAGGLISAPPLGESFAIVHAPGADAARLRQHTQVSLDRRGYAVMPALVPYQVNTVELDPKGMSRDTELQLTAQSVVPRAGAASLLRYPTRSGRQFTLRARFEDGSALPFGALVFAGQATGQDELGMVGQGSRLHVRTDRDAGTLLVKWGDAPDEQCSLAYQLADSQPQRVHTCRRGEA
>NZ_CP051857.1|WP_170030429.1|3439219_3439957_-|fimbria/pilus-periplasmic-chaperone
MRFLFTALRRGLLLAVCLASPPLVADVVIANTRVVFPADQSEVTVKLSNVGSKPSLVQAWVDDGRPQAQVLDLQVPFNVMPAMFRLDGDKGQSLRLFHDGDGMPADRESLYWLNVLEVPTKQSGNAMQVAIRSRIKLLYRPVGLRGKAVEAHQRVTWHLRPDGKQWVLMAENASPYVVNLASVSLQQDGKAPLELEPHHLLPFASTRFDVERLAGQATVRLRYAFIDDYGAVRDASQAVTVRQGN
>NZ_CP051857.1|WP_170030430.1|3440017_3440542_-|type-1-fimbrial-protein
MNSKSLFAGCCMLLFWAQAAHADTGVISFDGRVDAPTCQVNGGNGDLAVSLPPVNATRLVKPGQTYGDTLFQLNLSNCSPGVTSVSTYFESGSTISPEGRLIVDAGGSENVQVELLNDQQAPMNLAAPKGAQNSQWVAIVSGNATLRYTARYYSTGGTTPGLVATRVAYSLDYK
>NZ_CP051857.1|WP_170030431.1|3440739_3442095_-|glutathione-disulfide-reductase
MAYDFDLFVIGAGSGGVRAARFAAGFGAKVAVAESRYLGGTCVNVGCVPKKLLVYGAHVADELEQAAGFGWTLEEGHFDWGTLIANKNREIERLNGIYRNLLLNSGVTLLQGHARLTGANEVEVEGQRYSAKHILIATGGWPQVPDIPGKELAITSNEAFYLKDLPRRVLVVGGGYIAVEFAGIFHGLGATTSLLYRGDLFLRGFDGSVRTHLKEELEKRGLDLQFNADIQRIDKLEDGSLKATLNDGRELLADCVFYATGRRPMLDNLGLENTGVELDARGFIRVDDQYQTTAASILAIGDVIGRVQLTPVALAEGMAVARRLFKPEQYRPVDYRNIPTAVFSQPPIGTVGLSEEQALEAGHKVQIFESRFRAMKLTLTDIQEKTLMKLVVDAETDKVLGCHMVGPDAGEIIQGLGIALKAGATKQQFDETIGVHPTAAEEFVTLRTITR
>NZ_CP051857.1|WP_013973181.1|3442191_3443031_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MIKKCLFPAAGYGTRFLPATKAMPKEMLPVVNKPLIQYGVEEALDAGLNEISIVTGRGKRALEDHFDISYELENQIKGTDKEKYLVGIRRLLDECSFSYTRQTEMKGLGHAILTGRPLIGDEPFAVVLADDLCVNPEGDGVLTQMVKLYNQFRCSIVAIQEVDPQETNKYGVIAGDMIRDDIFRVTNMVEKPKPEDAPSNLAIIGRYILTPDIFDIIANTEPGKGGEIQITDALMQQAQNGCVIAYKFKGKRFDCGGAEGYIDATNFCFENYYKTGKAY
>NZ_CP051857.1|WP_170030432.1|3443329_3444244_-|c-type-cytochrome
MKPLLPSLLLLAMGSAQAAQIAMEDQSQLKVPGVQAAPQFVPPAESDLPDNAFGKMVREGHALFVDTRRLMPEAVGNGMNCSNCHLDQGRLAHSAPMWGAYPMYPAYRKKNDKVNTYAERIQGCFQFSMNGKPPAADSPQMTALAVYSYWLSTKAPTGVEIAGRGYPEVAQPKGGYDFKRGQQVYREQCAICHGDNGEGQKVAGEYVMPPLWGKDSYNWGAGMHRINTAASFIKYNMPLGQPGSLSDQQAWDVAAWINRHERPQDPRLVEGSIEKTRLKFHANDGVNLYGQKVDGVLIGQGSGS
>NZ_CP051857.1|WP_170030433.1|3444240_3444891_-|cytochrome-c4
MTPLGRVVVGSLLILAWPAAHAADGQKVFTQGGANPAAMACLGCHGPDGKGIAAAGFPRLAGLPAGYLRKQLHDWRSGSRKQPVMEPLAKALSDDEIDAVSSYLASLPASPAGELRRQQIANDPTTRMALYGDWSRQIPGCVQCHGPGGSGVGEHFPPLAGQPASYLMAQLNAWRDGSRSNDPNQLMVGVAKAMTDAEVKAIAEFFARPASQEVTP
>NZ_CP051857.1|WP_170030434.1|3444968_3445328_-|hypothetical-protein
MKWMVAALSLTLGGCVSVAELEQSHETLDVISGKSPRAYADCVKHKLADTRDPLQEEQRGDGLRLIVPQKLSAGAGPAALVDIDKRGSGSSIKLHERLNNFPLRLGDVRTAATQCISGS

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Crispr_ID: NZ_CP051857_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051857_8

4974921-4975060

Orphan

Consensus_repeat	Method
CGTCAACTGTAGGAGCGGATTTATCCGCGAAGCAGGCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051857_8

>merge|NZ_CP051857|8|4974921-4975060|CRISPRCasFinder
CGTCAACTGTAGGAGCGGATTTATCCGCGAAGCAGGCGGCGCGGTGGGGGGCACCGGCTGTGCCGGTGATCGCGGCTGAAGCCGCTCCTACTGGTACGGCGTCAACTGTAGGAGCGGATTCATCCGCGAAGCAGGCGGCG

>NZ_CP051857|8|8|4974921-4975060|CRISPRCasFinder
CGTCAACTGTAGGAGCGGATTTATCCGCGAAGCAGGCGGCG	CGGTGGGGGGCACCGGCTGTGCCGGTGATCGCGGCTGAAGCCGCTCCTACTGGTACGG
CGTCAACTGTAGGAGCGGATTCATCCGCGAAGCAGGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051857.1\|WP_170032971.1\|4972074_4972947_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP051857.1\|WP_170032965.1\|4969648_4970656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223701
NZ_CP051857.1\|WP_170032974.1\|4973955_4974297_+\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058
NZ_CP051857.1\|WP_170032987.1\|4983180_4984482_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
NZ_CP051857.1\|WP_170032976.1\|4975205_4977272_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NZ_CP051857.1\|WP_170034307.1\|4974344_4974875_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP051857.1\|WP_170032961.1\|4967123_4968077_-\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP051857.1\|WP_170032963.1\|4968241_4969513_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP051857.1\|WP_170032989.1\|4985553_4986690_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP051857.1\|WP_170032983.1\|4980234_4981002_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP051857.1\|WP_170032982.1\|4978958_4980056_+\|AGE-family-epimerase/isomerase	unknown	unknown	gnl\|CDD\|225493
NZ_CP051857.1\|WP_170032980.1\|4978232_4978865_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NZ_CP051857.1\|WP_170032967.1\|4970727_4971015_-\|phosphate-starvation-inducible-protein-PsiF	unknown	unknown	gnl\|CDD\|183165
NZ_CP051857.1\|WP_019098909.1\|4982308_4983184_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|183080
NZ_CP051857.1\|WP_170032969.1\|4971078_4971867_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NZ_CP051857.1\|WP_170032978.1\|4977612_4978110_+\|phage-infection-protein	unknown	unknown	unknown
NZ_CP051857.1\|WP_170032985.1\|4981595_4982312_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP051857.1\|WP_170032973.1\|4972943_4973834_-\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001
NZ_CP051857.1\|WP_013974411.1\|4984484_4985399_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182689
NZ_CP051857.1\|WP_170032959.1\|4966815_4967121_-\|chaperone-modulatory-protein-CbpM	unknown	unknown	gnl\|CDD\|182346

Protein	Function_ID	Function_description	E-value
NZ_CP051857.1\|WP_170032971.1\|4972074_4972947_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.4618e-13
NZ_CP051857.1\|WP_170032965.1\|4969648_4970656_-\|hypothetical-protein	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	5.9242e-10
NZ_CP051857.1\|WP_170032974.1\|4973955_4974297_+\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	7.39995e-50
NZ_CP051857.1\|WP_170032987.1\|4983180_4984482_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	2.07473e-162
NZ_CP051857.1\|WP_170032976.1\|4975205_4977272_-\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	1.30555e-164
NZ_CP051857.1\|WP_170034307.1\|4974344_4974875_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	6.62228e-40
NZ_CP051857.1\|WP_170032961.1\|4967123_4968077_-\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	2.79414e-148
NZ_CP051857.1\|WP_170032963.1\|4968241_4969513_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP051857.1\|WP_170032989.1\|4985553_4986690_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	5.92574e-141
NZ_CP051857.1\|WP_170032983.1\|4980234_4981002_-\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.23168e-143
NZ_CP051857.1\|WP_170032982.1\|4978958_4980056_+\|AGE-family-epimerase/isomerase	gnl\|CDD\|225493	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism].	2.03472e-46
NZ_CP051857.1\|WP_170032980.1\|4978232_4978865_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	6.61186e-42
NZ_CP051857.1\|WP_170032967.1\|4970727_4971015_-\|phosphate-starvation-inducible-protein-PsiF	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	5.40012e-16
NZ_CP051857.1\|WP_019098909.1\|4982308_4983184_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	4.95846e-132
NZ_CP051857.1\|WP_170032969.1\|4971078_4971867_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.32789e-33
NZ_CP051857.1\|WP_170032985.1\|4981595_4982312_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	2.74268e-135
NZ_CP051857.1\|WP_170032973.1\|4972943_4973834_-\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	9.42207e-39
NZ_CP051857.1\|WP_013974411.1\|4984484_4985399_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	3.35547e-102
NZ_CP051857.1\|WP_170032959.1\|4966815_4967121_-\|chaperone-modulatory-protein-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	2.00363e-25

>NZ_CP051857.1|WP_170034307.1|4974344_4974875_+|bacterioferritin
MTAIELTDVQTLRQRARQHVENGAVTEGYHADRERIIRLLNEALATELVCTLRYKRHYFMASGVKASIAAEEFLEHANQEAEHADRLAERIVQLGGEPDFNPDNLSKNSHAQYVAGTTLKEMVLEDLVAERIAIDSYREIIQYIGDKDPTTRRIFEDILAQEEEHADDMSDLLQGL
>NZ_CP051857.1|WP_170032974.1|4973955_4974297_+|osmotically-inducible-lipoprotein-OsmE
MYKQTLAILLASATLAACGSRPENPVDYVTYRDEPLVKQVENGMTMQKVIAIGGSPSNVTDLPHGGTCNDYILNRDGHQQPYYVRFDATGHVDAKGFKTCKQRQEDSDAAHGA
>NZ_CP051857.1|WP_170032973.1|4972943_4973834_-|triacylglycerol-lipase
MPQELTTRYPLVLVPGMLGFVRVVLYPYWFGIVPALRKGGAQVFPVQVSPLHCSEVRGEQLLAIIEDICQRHNVEKVNLIGHSQGALDARYAAARRPERVASVTSVAGPNQGSELADYLERRAPGDSPQGRLLKALLHGIAVLLVWLETGWRRDPLPVDVHASHQALTSSGVARFNQAYPQGLPDSWGGEGAYQVDGVRYYSWSGTLQPGLTDRGRNRFDGSNYFCRLFARSFVKEKGQCDGMVGRFSSHLGQVIGDDYPLDHLDIVNQSLGAIGRGAEPVRLFTEHAARLKAAGL
>NZ_CP051857.1|WP_170032971.1|4972074_4972947_+|DMT-family-transporter
MNYLFPLTAMLIWAGNTVVTKMSAGAIHPAEIGFYRWLLAALLFTPFLLPAVWRNRTAIRPHLAKVAVLGVLGMALYQSLAYFAAGITSATNMGIILSLMPLMALALSIAWLGQRLSYGALLGAVVSFFGVVEVVSAGDPASLLRQGLNGGDLLMLVATLAYALYSFLLKKWQLRLPPMQLLYLQVLVAIVVLLPLFLLSEKTGLDSHNIGLVLYACVLASMIAPLLWMQAVHRLGPSRTTLFFNLLPLATAVIAAVALDEQLARYHLLGGLLTLAGVLLAERWTTPIRR
>NZ_CP051857.1|WP_170032969.1|4971078_4971867_-|helix-turn-helix-transcriptional-regulator
MPRKYLDIPQFTQLPAPVYFRHDEFGADTHSALHRHTWGQLNYTAHGVMQLDVAGQRFLSPPQYAVWVPPDTEHGCYNPHAIVYRSIYLDRSLCAALPQQPCSLIISDILKAILADFARRDLRVAEGERDQRLVQVLLDQLLLAPTQACYLPLAHSEGLRQVLDALAAEPGDNRPLADWAARVHVSERTLARQFLRELGISFGEWRLRLRFLRAIDALEAGLPIQAIAFDLGYSSASAFIAMFQRQAGCTPEQYRRQARAKR
>NZ_CP051857.1|WP_170032967.1|4970727_4971015_-|phosphate-starvation-inducible-protein-PsiF
MKVLQIPLLVLAVLFSAQGFAATTAQQEKMKTCNADATAKALKGDERKAFMSTCLKKEVPQTQQEKMKTCNADATSKALKGDERKAFMSDCLKKK
>NZ_CP051857.1|WP_170032965.1|4969648_4970656_-|hypothetical-protein
MTFTPRQVTLASWIIVFAGLLLALPLKLLPSLLAGLLVFELVNMLTPRLQPLIAGQRARWLAVALLGTLVVITLALLIAGAFSFLLHEAENPGASLDKFMALVERARGQLPPFIEGYLPASAAEFKVAIGDWIKSHLSDLQLVGKGMAHMFVTLLIGMILGAIVALQRIPDISRRKPLAAALFERLSLLVQAFRNIVFAQIKISLLNTTFTGIFLAMVLPMFDVHLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGLSLSIWVAAAALGYLIIIHKVEYFLNARIVGGQISAKSWELLLAMLVFEAAFGLPGVVAGPVYYAYLKSELKRAELV
>NZ_CP051857.1|WP_170032963.1|4968241_4969513_+|Hsp70-family-protein
MSDVSPARALGIDFGTSNSTVGWHRPGVESLIALEDGKITLPSVVFFNIEERRPVYGRLALHEYLEGYEGRLMRSLKSLLGSKLIKHDTSVLGSALPFKDLLGMFIGELKKRAEATAGREFDQVVLGRPVFFVDEDPAADQEAEDTLAEVARKIGFKDVSFQYEPIAAAFDYESGISREELVLIVDIGGGTSDFTLIRLSPERHLVAERQSDILATGGVHIGGTDFDKQLSLQGVMPLFGYGSRMKSGALMPTSYHLNLATWHTINALYSQKSQLALGSMRYDIEDTLGIDRLFKLIEERAGHWLAMEVEASKIELTEQQSRRVDLGRIERELGVDLSRTLFEAAIEGLLERVRGSVSELLAKAGVSETQVDTVFFTGGSSGIPALRNSVAAMLPNARHVEGNIFGSIGSGLAIEARKRYGVA
>NZ_CP051857.1|WP_170032961.1|4967123_4968077_-|curved-DNA-binding-protein
MDFKDYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAEFDEIRKYGGQHGRPFQAPPGWESRGGGGGFEGGDFSDFFSSIFGARGGNPFGGARQQQRSAGRRGQDVELELAVFLEETLNKESKQISFQVPQTNAMGQRTGFTTKTLNVKIPAGVTDGERIRLKGQGAPGSAGGANGDLFLTIRMAPHPLFDVEGHDLIITVPLAPWEAALGTKVAVPTLTGQINLTIRPDSQTGQRLRVKGMGLLNKKGERGDLYAQLKVVMPTTSDATTRELWTQLSEKAAFNPRTQWSK
>NZ_CP051857.1|WP_170032959.1|4966815_4967121_-|chaperone-modulatory-protein-CbpM
MSSTLIVQLDMRTLCQEADLTADCVIEIVEHGIVEPSGRTPEDWLFDDQAPLLAKRAAKLHEELELEWEGVALALELLQEVRQLRSENSMLRQRLGRFIQM
>NZ_CP051857.1|WP_170032976.1|4975205_4977272_-|AsmA-family-protein
MTRPARILVWTFTSLLTLLAILVVVIATFDWNRVKPLLNDKVSEALQRPFAINGNLAVEWRTEAQEGGWRAWVPWPHFIAEDLSLGNPAWLNEQKMVGLERVAFRLAPLPLLFRQISIPRIDLTKPTASLTRLADGRANWTFDFGPKDDNAEPSKWQLDIGAIGFDQGNVSFDDQTLKTSMKVQIDPLGKPIPFSDIVGKARAEKAGAAQDYAFGLKVQGRYKGQPVAGSGKIGGLLALQDASQPFPLQADVRIADTHVVLAGTLTDPRNLGALDLRLRLSGASLGNLYPLTGVTLPDTPAYSTDGHLSANLHAAQGATFDYQGFNGQIGDSDIHGDLVFVASQPRPRLSGNLVSNQLLFKDLAPLIGADSNAEQKTRGGAGKQPQGKVLPVEEFRTERWRAMDADVTFAGKRIVHSAQLPFNDLSAHVILEDGLLRLEPLRFGVAGGNLASQIRLDGRNVPLQGRARLTARGFKLKQLFPGFAPMQTSFGELNGDADITGRGNSVAALLGTANGDLRMLVNDGAISRSLMEIAGLNVGNYVVGKLFGDEDVKINCAAADVGIKDGLATTRLFIFDTENAIIYINGTANFASEQLDLKITPESKGLRLFSLRSPLYVRGPFAKPSAGVQAVPLALRGAGMVALGVVAGPAAGLLALVAPSSGDDPNQCTPLLQQMKAGKAPAAVKGKQ
>NZ_CP051857.1|WP_170032978.1|4977612_4978110_+|phage-infection-protein
MKRHLLTLTLSILAANAFALPADEQHLTAESRSSAAEIAQPLKTVAEGGSDRLIERTGRVAEGGSDRLIERTGRVAEGGSDRLIERTGRVAEGGSDRLIERTGRVAEGGSDRLIERTGRVAEGGSDRLIERTGRVAEGGSDRLIERSGRVAEGGSDRLVEISRVS
>NZ_CP051857.1|WP_170032980.1|4978232_4978865_+|TetR-family-transcriptional-regulator
MLPRAEQKLQTRQALLDAACQLMESGRGFGSISLREVAKTAGIVPTGFYRHFSDMDALGLALVAEVDATFRQTIRLVRHNEFELGGITDASVRIFLDVVAAHRAQFLFLAREQYGGSQAVRQAIARLRQDISDDLATDLARMKRWQHLDGAALAVMADLVVKTVFATLPELIDSPEPGYPQALTPQEKITQQLRFIFVGARHWQGLGNPG
>NZ_CP051857.1|WP_170032982.1|4978958_4980056_+|AGE-family-epimerase/isomerase
MSNPRHTLPELARFNQHFAERIVPLWQGPGWNADMALPYEALDAEQRPLPVQRYRAMACARQLYLFSSRIGQPGAAERAAALFRSLQKHFHDAEHGGWFYSIDAQGKPLDRRKDLYTHAFIVFACAHYWGKVRESLVESTLNAALDIIDQQFARDDGLYEASLGEDWADLGSGPLQNPQMHLAEAFLQVLAVREDEHTRQSLLQLCEALQAHFIEPAHGLMLEKPRGAVDNWFEPGHQFEWFYLLHTSPLLRGTPLHASIDRAFGFAEQYGVKDGAVVAMLAVDGQVLDATQRIWAQAEYLRALVLRAGGEAKLAGQLQALEARFLRQAGWYECRDGEGAVSRHDMPSTTPYHLATCLEGLQRLG
>NZ_CP051857.1|WP_170032983.1|4980234_4981002_-|SDR-family-oxidoreductase
MTSTVFITGATSGFGEATARRFAEAGWKLVLTGRRKERLDALCAELSAKTEVHGLVLDVRDRKAMEQAIANLPAGFDKLRGLVNNAGLALGVDAAQNCSLDDWETMVDTNIKGLIYTTRLLLPRLIAHGRGASILNVGSVAGNYPYPGSNVYGGTKAFVGQFSLSLRCDLRGTGVRVSNIEPGLCESEFSLVRFGGDQAKYDATYAGAEPIQPQDIAETIFWILNQPAHININSLELMPVSQDWAGFSIDRSAKG
>NZ_CP051857.1|WP_170032985.1|4981595_4982312_-|ABC-transporter-ATP-binding-protein
MTAPILELKDLDVFYGPIQALKKVSMHINEGETVSLIGANGAGKSTLLMSIFGQPRAASGHIVYRGTDITRKSSHYIASNGIAQSPEGRRVFPDMTVEENLMMGTIPIGDKHADEDMQRMYELFPRLKERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFSTLRELAKTGMTIFLVEQNANHALKLSDRAYVMVNGQIRMTGTGQELLVNEEVRNAYLGGH
>NZ_CP051857.1|WP_019098909.1|4982308_4983184_-|ATP-binding-cassette-domain-containing-protein
MSDDIILSVDNLMMQFGGIKALSDVSLKVKRNQIFALIGPNGAGKTTVFNCLTGFYKASGGRIELNVRGSHTNVIQLLGERFQAADFVSPARFANRLYYKMFGGTHLVNRAGLARTFQNIRLFKEMSVVENLLVAQHMWVNRNLLAGVLNTKAYRKAESDALDHAFYWLEVVDLVDCANRLAGELSYGQQRRLEIARAMCTRPKIICLDEPAAGLNPQETEALSRMIRVLRDEHDITVVLIEHDMGMVMSISDHIVVLDHGNVIAEGAPQDIRHNPTVIAAYLGADEEELV
>NZ_CP051857.1|WP_170032987.1|4983180_4984482_-|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MSIAKTAVVPETKGFDLKRSLLETIVAGLLALIVFGPVVGVVLDGYSFNAEPRRVAWLVGGVMLGRFLLSLYLQTAAGTRMLQGFESGGSGVHVRAPGYVSRLRYIIPALVVIAIVFPIFANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWSVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPAPSPTFFGLEFGRRAKDGGVPIHEFFGFEYNANLKFVFIYAVLFMVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTLGASTAGLAGVFFATYQGFVNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVLLFGVLMVLMMIWRPRGLIRISRTGVTPRKGVAP
>NZ_CP051857.1|WP_013974411.1|4984484_4985399_-|branched-chain-amino-acid-ABC-transporter-permease
MDGIFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGIESFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQGARQQGVPTLLEGAWRVEVGTGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLGRPLVAKV
>NZ_CP051857.1|WP_170032989.1|4985553_4986690_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MSQTFYKKGFLALAVATALGVSSYVQADIKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGVNGEKIVLVKGDDACEPKQAVAVANRLVDQDKVVGVVGHFCSSNTIPASEVYDEAGVIAITPGSTNPQVTERGLSAMFRMCGRDDQQGIVAGDYIVDVLKGKKVAVLHDKDTYGQGLADATKAQLEKRGVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGPLVRQLREQGLKDVKFMSDDGIVTDELVSTAGGAQYVDGVYMTFGADPRLLPDSKAVVEEFRKNGTEPEGYTLYAYASLQALAAAFNGAKSNKGEDAAEWLKANPVQTVMGEKKWDKKGDLTVSDYVVYQWDAQGKYHQLEKQK

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Crispr_ID: NZ_CP051857_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051857_9

5589773-5589846

Unclear

Consensus_repeat	Method
AGGCCGCTCCTACAGAGGACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051857_9

>merge|NZ_CP051857|9|5589773-5589846|CRISPRCasFinder
AGGCCGCTCCTACAGAGGACCGCGTGTCCCGTAGGAACCCATCGCGGCACTAGGCCGCTCCTGCAGAGGACCGC

>NZ_CP051857|9|9|5589773-5589846|CRISPRCasFinder
AGGCCGCTCCTACAGAGGACCGC	GTGTCCCGTAGGAACCCATCGCGGCACT
AGGCCGCTCCTGCAGAGGACCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051857.1\|WP_003253317.1\|5600848_5601247_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP051857.1\|WP_170033846.1\|5589903_5590800_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP051857.1\|WP_170033832.1\|5582510_5583659_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|179902
NZ_CP051857.1\|WP_170033848.1\|5591040_5591943_-\|response-regulator	unknown	unknown	gnl\|CDD\|381150
NZ_CP051857.1\|WP_170033852.1\|5592942_5593776_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184582
NZ_CP051857.1\|WP_170033854.1\|5595535_5597824_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226956
NZ_CP051857.1\|WP_170033838.1\|5584625_5585516_+\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237229
NZ_CP051857.1\|WP_170033850.1\|5592107_5592878_-\|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl\|CDD\|182974
NZ_CP051857.1\|WP_170033860.1\|5601318_5602215_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP051857.1\|WP_170033844.1\|5588394_5589735_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP051857.1\|WP_170033834.1\|5583675_5583843_-\|rubredoxin	unknown	unknown	gnl\|CDD\|224687
NZ_CP051857.1\|WP_170033840.1\|5585633_5586005_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226765
NZ_CP051857.1\|WP_170033842.1\|5586895_5588221_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|274368
NZ_CP051857.1\|WP_170033830.1\|5582023_5582323_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP051857.1\|WP_003253341.1\|5586175_5586865_+\|phosphate-regulon-transcriptional-regulator-PhoB	unknown	unknown	gnl\|CDD\|131209
NZ_CP051857.1\|WP_170033836.1\|5584068_5584626_+\|chorismate-lyase	unknown	unknown	gnl\|CDD\|113128
NZ_CP051857.1\|WP_170034350.1\|5593847_5595464_-\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|227318
NZ_CP051857.1\|WP_170033828.1\|5581506_5581875_-\|helicase	unknown	unknown	gnl\|CDD\|376720
NZ_CP051857.1\|WP_170033856.1\|5597963_5598962_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|273991
NZ_CP051857.1\|WP_170033858.1\|5599196_5600486_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927

Protein	Function_ID	Function_description	E-value
NZ_CP051857.1\|WP_003253317.1\|5600848_5601247_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	6.59033e-51
NZ_CP051857.1\|WP_170033846.1\|5589903_5590800_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.9749e-29
NZ_CP051857.1\|WP_170033832.1\|5582510_5583659_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|179902	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW.	2.02487e-107
NZ_CP051857.1\|WP_170033848.1\|5591040_5591943_-\|response-regulator	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.21807e-48
NZ_CP051857.1\|WP_170033852.1\|5592942_5593776_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184582	PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional.	0
NZ_CP051857.1\|WP_170033854.1\|5595535_5597824_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226956	COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP051857.1\|WP_170033838.1\|5584625_5585516_+\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237229	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase.	5.78386e-173
NZ_CP051857.1\|WP_170033850.1\|5592107_5592878_-\|phosphate-signaling-complex-protein-PhoU	gnl\|CDD\|182974	PRK11115, PRK11115, phosphate signaling complex protein PhoU.	2.38335e-90
NZ_CP051857.1\|WP_170033860.1\|5601318_5602215_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	8.27501e-127
NZ_CP051857.1\|WP_170033844.1\|5588394_5589735_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	4.02883e-127
NZ_CP051857.1\|WP_170033834.1\|5583675_5583843_-\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	1.82044e-23
NZ_CP051857.1\|WP_170033840.1\|5585633_5586005_-\|hypothetical-protein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	7.27852e-44
NZ_CP051857.1\|WP_170033842.1\|5586895_5588221_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	0
NZ_CP051857.1\|WP_170033830.1\|5582023_5582323_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	3.00363e-35
NZ_CP051857.1\|WP_003253341.1\|5586175_5586865_+\|phosphate-regulon-transcriptional-regulator-PhoB	gnl\|CDD\|131209	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	5.4912e-141
NZ_CP051857.1\|WP_170033836.1\|5584068_5584626_+\|chorismate-lyase	gnl\|CDD\|113128	pfam04345, Chor_lyase, Chorismate lyase. Chorismate lyase catalyzes the first step in ubiquinone synthesis, i.e. the removal of pyruvate from chorismate, to yield 4-hydroxybenzoate.	7.05503e-50
NZ_CP051857.1\|WP_170034350.1\|5593847_5595464_-\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|227318	COG4985, COG4985, ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism].	8.6876e-109
NZ_CP051857.1\|WP_170033828.1\|5581506_5581875_-\|helicase	gnl\|CDD\|376720	pfam02036, SCP2, SCP-2 sterol transfer family. This domain is involved in binding sterols. It is found in the SCP2 protein, as well as the C-terminus of the enzyme estradiol 17 beta-dehydrogenase EC:1.1.1.62. The UNC-24 protein contains an SPFH domain pfam01145.	0.000490772
NZ_CP051857.1\|WP_170033856.1\|5597963_5598962_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|273991	TIGR02136, ptsS_2, phosphate binding protein. Members of this family are phosphate-binding proteins. Most are found in phosphate ABC-transporter operons, but some are found in phosphate regulatory operons. This model separates members of the current family from the phosphate ABC transporter phosphate binding protein described by TIGRFAMs model TIGR00975. [Transport and binding proteins, Anions].	9.29368e-107
NZ_CP051857.1\|WP_170033858.1\|5599196_5600486_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.85995e-88

>NZ_CP051857.1|WP_170033844.1|5588394_5589735_+|HlyC/CorC-family-transporter
MDPSPGISLTSLFADFGMIIFALLLVLLNGFFVAAEFAMVKLRATRVESIAELHGWRGNILRKVHNQLDAYLSACQLGITLASLGLGWVGEPAFAHLLEPLLAYLGVDTPELIKAISFFVAFFVISYLHIVVGELAPKSWAIRKPELLSLWTAVPLYLFYWAMYPAIYLLNASANAILRIAGQGEPGPHHEHHYSREELKLILHSSRGQDPSDQGMRVLASAVEMGELEVVDWANSREDMVSIDAHAPLKQILALVRRHKFSRYPVYDAEREEFTGLLHIKDLLLELAELEHLPETIDLDDLARPLERVSRHMPLAQLLEQFRKGGAHFVLVEEADGKVIGYLTMEDVLEVLVGDIQDEHRKAERGILAYQPGKLLVRGDTPLFKVERLLGVDLDHIEAETLAGLVYETLKRVPEEEEVLEVEGLRIIIKKMKGPKIVLAKVLKLD
>NZ_CP051857.1|WP_170033842.1|5586895_5588221_+|phosphate-regulon-sensor-histidine-kinase-PhoR
MYKDSQLNQNWHATLIRHLLLLITVCLIGGLASGYYGWSLAIGLALYLGWTLKQLLRLHDWLRNHQPDEAPPDGYGLWGEVFDSIYHLQRRDQRVRGRLQAVIDRVQESTAALRDAVIMLDSDGNLEWWNRAAETLLGFKTPQDGGQQVTNLVRHPRFKEYFEAGNYLEPLEIPSPINDRMRLQLHITRYGNNEHLMLVRDVTRIHQLEQMRKDFVANVSHELRTPLTVITGYLETLLDNVEDVNPRWGRALQQMSQQGSRMQTLLNDLLLLAKLEATDYPSDNQPVAVDALLAAIKNDAQALSGPRNQRITLEAAPGVKLKGSESELRSAFSNLVFNAVKYTQDEGSIRIRWWADAQGAHLSVQDSGVGIDAKHLPRLTERFYRVDSSRASNTGGTGLGLAIVKHVLMRHRGRLEISSVPGHGSTFTCHFAPAQLASGKG
>NZ_CP051857.1|WP_003253341.1|5586175_5586865_+|phosphate-regulon-transcriptional-regulator-PhoB
MVGRNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVWGGNVYVEERTVDVHIRRLRKALGEAYENLVQTVRGTGYRFSTKS
>NZ_CP051857.1|WP_170033840.1|5585633_5586005_-|hypothetical-protein
MTRHTLSWMALFTALALPGVASAEHAMEKGGMLVDPAGMTLYTFDKDTGGKSMCNDGCASNWPPLMVKATDEPAEGKWTVVMRDDGSKQWAYDGKPLYTFIKDKKAGDMTGDGVKDVWHVAKP
>NZ_CP051857.1|WP_170033838.1|5584625_5585516_+|4-hydroxybenzoate-octaprenyltransferase
MYLQLLKSLNRLHPRAWDFIQLSRMDRPIGIYLLLWPTLSAVWIAGNGSPTVANVLIFGLGVVLMRAAGCCINDFADRKVDGHVKRTADRPLASGRVRPREALALFAILVGVSFLLVLCTNSRTVWLSFGAVALAFCYPFMKRYTYYPQVVLGAAYSWGIPMAFTAAGGELPASAWLLYIANLLWTVGYDTYYAMVDRDDDLKIGVKSTAILFGDADRTIILTLQLLSLGCLLLAGNRFELGGWFHLGLLGAAACFAWEYWSTRKLDRESCFKAFLHNHWAGMLVFIGVVLDYALR
>NZ_CP051857.1|WP_170033836.1|5584068_5584626_+|chorismate-lyase
MSYESPQAAAVAWLPYSQLATGIDQPTLDWLFDEGSLTRRLTRLSDDHFSVTPLFEGWQPLRDDECQALGIAAGAEGWVREVYLRGHGQPWVFARSVASRTALERGGLDLETLGSRSLGELLFCDQAFIRHPIEVCSYPQAWLPGEAAHTALWGRRSRFERGGLDLLVAEVFLPALWQAAREETR
>NZ_CP051857.1|WP_170033834.1|5583675_5583843_-|rubredoxin
MKKWQCIVCGLIYDEAEGWPDDGIAPGTRWEDVPEDWLCPDCGVGKSDFEMISIA
>NZ_CP051857.1|WP_170033832.1|5582510_5583659_-|FAD-dependent-oxidoreductase
MTSPVVIIGTGLAGYNLAREFRKLDAQTPLLLITADDGRSYSKPMLSTGFAKHKDADGLCMAEPGAMAEQLNAEIRTHTRISGIDPGHKRLWVGEEAVEYRDLVLALGAQTVQAPIDGDGGDLVFPINDLEDYARFRAAACGKRRVLILGAGLIGCEFANDMSLGGFQVDVVAPCEQVMPTLLHPAAATAVQAGLEGLGVRFHLGPVLARLEKVGQGLAAHLSDGSVIACDLVVSAIGLRPRTDLAAAAGLQTNRGISVDRQLRTSHANIFALGDCAEVDGINLLYVMPLMSCARALAQTLAGNPTTVAYGPMPVTVKTPACPLVVSPPPQGHEGTWQVEGQGSDLKLLCLDAEGKLLGYALTGAAVMEKLALNRQLPAVMA
>NZ_CP051857.1|WP_170033830.1|5582023_5582323_-|HU-family-DNA-binding-protein
MRKPELAAVIAEKADLTKDKANQVLNAILDSITGALDKDTVTLVGFGTFEKRHRGARTGKNPQTGEPVKIKASNTVAFKPGKNLRDSVNVPAKPAKKGK
>NZ_CP051857.1|WP_170033828.1|5581506_5581875_-|helicase
MKFRFLLWAMGWLMARASRNNPAFQQQLKGKDLVFQMQTLDGKVARHFIVSNERISSKGGAHPQPAFAIAFKDAAYGFATMQASNKQLAFMQGIQDKHIQIKGNPALVMWFQGLMKYLKPKK
>NZ_CP051857.1|WP_170033846.1|5589903_5590800_-|M23-family-metallopeptidase
MPARLLLFCALLMASASSLGMTTYTINDDGRVTSYTDRPGPRAKPLVQRVPMVEMHEGQVQLNAITFDGGVSFSARNQLHVPVEVELRLDNLVNAQGGNAPRIVRRLLPPHSTQMLSVLRGRPGMLLNYRSTLLQAMGDPGRRPQGFRYAFPWLGGPFRVTQGPNGRVSHFGPKGRYAMDIAMPEGTTIIAAREGVVVKTENRQSGRGPNPSGNFVRILHPDGTMGVYLHLMRGSVVVTEGQRVRQGQMLAKSGNTGNSTGPHLHFVVQRNVGLALESIPYQFDRPINGLPDFTAGNP
>NZ_CP051857.1|WP_170033848.1|5591040_5591943_-|response-regulator
MSKVNVLVVDDAPFIRDLVRKCLRNAFPGMTIDDAVNGRKAMALLGKEAFDLVLCDWEMPEMSGLELLTWCRQQPELKNLQFIMVTSRGDKENVIQAIQAGVSDFVGKPFTNEQLLTKVKKALSKIGKLDSVMSSGPARINSAFANDSLSALTAGKPEVAKITAPAAAPAPARPLVSAAAAAPATPAPTGRGQGQLRLASGMQACVIKALSLKEALLVVRRGETLPQVLEGAVLNLEQGENAEVARLNGYLHAIVALEPKPDSDWLQLTFKFVDQDAQKLDYLSRLIARGTAQKHFTPGA
>NZ_CP051857.1|WP_170033850.1|5592107_5592878_-|phosphate-signaling-complex-protein-PhoU
MINKESLTHHISQQFNAELEEVRSHLLAMGGLVEKQVNDAVTALIEADSGLAQQVREVDEQINQMERNIDEECLRILARRQPAASDLRLIISISKSVIDLERIGDESTKIARRAIQLCEEGESPRGYVEVRHIGDQVRNMVRDALDAFARFDADLALSVAQYDKTIDREYKTALRELVTYMMEDPRSISRVLSVIWVLRSLERIGDHARNISELVIYLVRGTDVRHMGLKRMTAEVQGTAVDDGEKANVPAEPDDK
>NZ_CP051857.1|WP_170033852.1|5592942_5593776_-|phosphate-ABC-transporter-ATP-binding-protein
MQQESHAHGIDMSALGRDKQGLRLAEETVAIEVPGLSLFYGDKQALFDVQMNIPKQRVTAFIGPSGCGKSTLLRTFNRMNDLVDGCRVEGAINLYGTNIYRKGEDVAELRRRVGMVFQKPNPFPKTIYENVVYGLRIQGINKKRVLDEAVEWALKGAALWDEVKDRLHDSALGLSGGQQQRLVIARTIAVEPEVLLLDEPCSALDPISTLKVEELIYELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEFGDTDTLFTNPAKKQTEDYITGRYG
>NZ_CP051857.1|WP_170034350.1|5593847_5595464_-|phosphate-ABC-transporter-permease-PstA
MSGGAVAMAVIMTVGLLAVIAVRGLGHFWPADLVQATYKVPGQADHVVIGEVVQKEEVPRARLKGAGLPVPDQGPEFMTRELIKVGNRDLNGSDFTWVVGEWLVDEQHPADLMALERREWGNFYGYLVSVKEEGRVVAEGPAAWNELQARLKRANQLNRELQSLEKKDIGAINHGLERLRLQARKLELDGKLDAAAQADMDADRAELNSRYKAIEERLTGLHQAFARDSLVARDANGREVEINLSKVVHAIQPNGMSGFTKLASYFTKVWEFLSDDPREANTEGGIFPAIFGTVMMTLIMAVIVTPFGVLAAVYLREYARQGPVTRLIRIAVNNLAGVPAIVYGVFGLGFFVYVLGGSIDRLFFPEALPAPTLGTPGLLWASLTLALLAVPVVIVATEEGLARIPRTVREGSLALGATKAETLWKIVLPMASPAMMTGMILAVARAAGEVAPLMLVGVVKLAPSLPVDGNYPYLHLDQKIMHLGFHIYDVGFQSPNVEAARPLVYATALLLVLVIAALNLSAVWIRNHLREKYKALDS
>NZ_CP051857.1|WP_170033854.1|5595535_5597824_-|ABC-transporter-permease-subunit
MNDLANSTMTPNSQPERIDFNTPELQRKRRMRALKDRLTRWYVLVGGLAVLAAITLIFFYLAYVVLPLFQGAELTSKKALEPTWLQQDSGKPLMIALEEQNLVGMRVSDKGQALFFDTKTGNALKRVDLPLPAGAQVTSISTDQPGSPLVVLGLSNGQALVFHHSYKITYPDNKKTIDPGIDYPYGEQPFVLDDQGQALDHVSVNVNGDVLLLAGSTGAHLQVVELTRSENMMTGEVTTEQNRIELPQMTETVKNIFIDPRQHWLYVINGRATADVFSLRDKSLNGRYKLSDSADTEITATAQLVGGISLIMGDSKGGLTQWFMARDPDGESRFKQIRSFQMGKAPIVQIDAEERRKGFIALDAEGKLGVFHSTAHRTLLVEQAAEGAGILALSPRANRIMIEEGGKLLPLSLRNPHPEISFSALWGKVWYENYDEPKYVWQSTASNTDFEPKLSLSPLTFGTLKAAFYAMVLAAPLAIAAAIYTAYFMAPGMRRKVKPVIELMEAMPTVILGFFAGLFLAPYLEGHLPGVFSLFVIMPIGILAAGFAWSRLPESIRLRIPDGWEAAILIPVILVIGWFALYMSPLLETWFFGGDMRLWITRDLGITYDQRNALVVGIAMGFAVIPNIYSIAEDAVFSVPRSLTLGSLALGATPWQTLTRVVILTASPGIFSALMIGMGRAVGETMIVLMATGNTPVMELNLFEGMRTLAANVAVEMPESEVGGSHYRVLFLAALVLLMFTFIMNTLAELIRQRLRKKYSSL
>NZ_CP051857.1|WP_170033856.1|5597963_5598962_-|phosphate-ABC-transporter-substrate-binding-protein-PstS
MKLKRLMAALTFAAAGVATANAVAAVDPAIPTYTKTTGVSGNLSSVGSDTLANLMTLWAEAYKKEYPNVNIQIQAAGSSTAPPALTEGTANLGPMSRKMKDVELQAFEQKYGYKPTAIPVAVDALAVFVHKDNPIKGLTMAQVDSIFSSTRLCGAKADVKTWGDLGVTGDLANKPIQLFGRNSVSGTYGYFKEEALCKGDFKPNVNEQPGSASVVQSISSSLNGIGYSGIGYKTASVKTVPLAKKEGGEFVEDNETNALNGKYPLSRFLYVYVNKAPNKPLAPLEAEFVKLVLSQAGQQVVVKDGYIPLPAKVIDKTLADLGLSHAGNVVKK
>NZ_CP051857.1|WP_170033858.1|5599196_5600486_-|MFS-transporter
MTSVPSSIEQPSRPLTRSDYKTLSLSALGGALEFYDFIIFVFFATVVGKLFFPADMPEWLRLMQTFGIFAAGYLARPLGGIIMAHFGDLLGRKKMFTLSIFMMALPTLIMGLLPTYAQIGLWAPVLLLLMRVIQGAAIGGEVPGAWVFVSEHVPARNTGYACGTLTAGLTAGILLGSLVATLINSVYSAEEVADYAWRIPFLLGGVFGLFSVYLRRWLHETPVFAEMQQRKALAEELPLRAVLRDHRGPIVLSMLLTWMLSAGIVVVILMTPALLQSIYHISPTDSLKANSLAIVLLSFGCIGAGSLADRFGAGRVFVIGSLLLLASSWTFYHSLPTRPELLFPLYAVTGLCVGVIGAVPYVMVKAFPAVVRFSGLSFSYNVAYAIFGGLTPMVVTALLKVSPMAPAYYVAGLCAVGLLVGLYLLSNKR
>NZ_CP051857.1|WP_003253317.1|5600848_5601247_+|acyl-CoA-thioesterase
MIELEQEDPIPQGDLALQITALPRETNGFGDIFGGWLVAQMDLAGTAMASRVAGGRVATVAIDRMAFLVPVAVGAQLSFYTQTLEIGRSSIQMMVEVWSDDPLSSEWRKVTEAVFVFVAIDGSGRTRSVPRR
>NZ_CP051857.1|WP_170033860.1|5601318_5602215_+|D-hexose-6-phosphate-mutarotase
MASFQVVSEQHGELNCWRISSNHAELLIAQQGAQILSYQCVGQPPLLWLSDQAIFRQGKSVRAGVPVCWPWFGNLQRNPQAVQAMYHGEQAPAHGLARTRDWQLLGIEEAGDGLRIEFELPEAQGKLPDWPHDVELKLLVELGAELKLKLTSRNMGNTPVTLSQALHSYFAVSDVRQVRVEGVEGLGYIETLADWEQRQQQGALAFSGETDRIYLATPPQLSIVDPHWNRRITLASSGSRSAVIWNPWTERAKELPDMADDGWQRMLCIETANVWDDLVELKPGATHSLGLVVASEAL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP051857_3	3.1\|1531384\|28\|NZ_CP051857\|CRISPRCasFinder	1531384-1531411	28	MH992219	Apis mellifera associated microvirus 46 isolate INH_SP_298, complete genome	4134-4161	7	0.75

1. spacer 3.1|1531384|28|NZ_CP051857|CRISPRCasFinder matches to MH992219 (Apis mellifera associated microvirus 46 isolate INH_SP_298, complete genome) position: , mismatch: 7, identity: 0.75

atgcccgctcccacaggggtatcactga	CRISPR spacer
caagccgctccctaaggggtatcactgg	Protospacer
  . ********  *************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1064273 : 1072053

Thermobifida_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_170028404.1\|1064273_1065128_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.4e-08	31.9
WP_170028405.1\|1065130_1065595_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003255135.1\|1065607_1065916_-	ribosome-associated translation inhibitor RaiA	A0A0K1LP60	Escherichia_phage	4.4e-05	34.1
WP_170028406.1\|1065995_1067489_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_012270657.1\|1067665_1068391_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.4e-23	26.5
WP_170028407.1\|1068391_1068916_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_170028408.1\|1068902_1069475_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_085623989.1\|1069483_1070008_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	4.1e-27	48.1
WP_170028409.1\|1070020_1070995_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.0e-36	32.8
WP_012270662.1\|1071243_1072053_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.5e-25	32.5

DBSCAN-SWA_2

1279524 : 1355106

uncultured_Caudovirales_phage(31.25%)

tail,protease,lysis,tRNA,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_170028631.1\|1279524_1280331_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	A0A291ATS8	Pandoravirus	1.0e-16	34.2
WP_170028633.1\|1280445_1280856_-	SufE family protein	NA	NA	NA	NA
WP_170028635.1\|1280852_1282058_-	cysteine desulfurase	Q2XUY6	environmental_halophage	4.0e-70	36.8
WP_170028637.1\|1282150_1283185_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_170028639.1\|1283216_1283564_-	ArsC family reductase	NA	NA	NA	NA
WP_170028641.1\|1284115_1285762_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_170028643.1\|1285872_1287069_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_170028644.1\|1287099_1289802_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_170028645.1\|1289845_1290628_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_046616139.1\|1291043_1291781_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_170028646.1\|1291968_1292832_+	elongation factor Ts	NA	NA	NA	NA
WP_003252294.1\|1293013_1293757_+	UMP kinase	NA	NA	NA	NA
WP_170028647.1\|1293753_1294311_+	ribosome recycling factor	NA	NA	NA	NA
WP_170028648.1\|1294326_1295082_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	5.9e-19	38.8
WP_170028649.1\|1295081_1295897_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_170028650.1\|1295893_1297084_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_170028651.1\|1297155_1298508_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_170028652.1\|1298581_1300942_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_015269197.1\|1300986_1301490_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_170028653.1\|1301491_1302547_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_028634990.1\|1302661_1303102_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_170028654.1\|1303098_1303875_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_170028655.1\|1303876_1305004_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_170028656.1\|1305005_1305629_+	ribonuclease HII	R4THQ2	Phaeocystis_globosa_virus	8.5e-16	32.9
WP_170028657.1\|1306281_1309806_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	4.7e-196	36.3
WP_170028658.1\|1309913_1310861_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_170028659.1\|1311009_1312293_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_170028660.1\|1312562_1314191_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	9.0e-158	52.9
WP_170028661.1\|1314194_1315040_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	8.5e-51	42.0
WP_170028662.1\|1315192_1316482_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.9e-139	59.6
WP_004375443.1\|1316650_1316932_+	cell division protein FtsB	NA	NA	NA	NA
WP_170028663.1\|1316928_1317636_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_170028664.1\|1317767_1318664_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016712915.1\|1318771_1319884_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	6.2e-33	29.5
WP_170028665.1\|1319892_1320747_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_170028666.1\|1320834_1321308_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_170028667.1\|1321304_1322363_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_170028668.1\|1322350_1323100_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.8e-68	53.0
WP_170034070.1\|1323135_1323774_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	51.2
WP_170034072.1\|1323993_1324851_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.9e-13	36.2
WP_170028669.1\|1324959_1325967_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	3.9e-34	35.8
WP_170028670.1\|1326483_1326807_-	ferredoxin family protein	NA	NA	NA	NA
WP_170028671.1\|1326947_1329521_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.8e-28	22.9
WP_170028672.1\|1329660_1330407_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	2.1e-117	83.9
WP_170028673.1\|1330882_1331221_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	2.3e-39	73.6
WP_170028674.1\|1331233_1331731_+	hypothetical protein	NA	NA	NA	NA
WP_170028675.1\|1331727_1332288_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.1e-43	74.4
WP_170028676.1\|1332360_1332687_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.3e-35	67.9
WP_170028677.1\|1332683_1333565_+\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	5.6e-106	69.2
WP_170028678.1\|1333566_1334175_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	4.5e-70	62.4
WP_170028679.1\|1334167_1336699_+\|tail	phage tail protein	A0A077K818	Ralstonia_phage	9.9e-87	55.3
WP_170028680.1\|1336704_1337103_+	hypothetical protein	NA	NA	NA	NA
WP_170028681.1\|1337185_1338352_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.2e-180	81.5
WP_170028682.1\|1338365_1338875_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.5e-63	69.5
WP_170028683.1\|1338885_1339188_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	2.3e-22	60.2
WP_170028684.1\|1339313_1341380_+	hypothetical protein	NA	NA	NA	NA
WP_170028685.1\|1341389_1342235_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.1e-72	49.6
WP_170028686.1\|1342209_1342416_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	5.1e-18	62.7
WP_170028687.1\|1342420_1343455_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.3e-130	69.0
WP_170028688.1\|1343482_1344031_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	4.6e-74	71.3
WP_170034074.1\|1344066_1344513_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	2.3e-31	57.0
WP_170028689.1\|1344604_1345087_+	CinA family protein	B5TK85	Pseudomonas_phage	7.0e-58	76.1
WP_170028690.1\|1345190_1346258_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	8.3e-112	62.0
WP_170028691.1\|1346276_1346747_+	recombination regulator RecX	NA	NA	NA	NA
WP_170028692.1\|1346867_1347986_-	LOG family protein	NA	NA	NA	NA
WP_170028693.1\|1348146_1348356_+	hypothetical protein	NA	NA	NA	NA
WP_170028694.1\|1348372_1348792_-	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_170028695.1\|1349011_1349722_+	DTW domain-containing protein	NA	NA	NA	NA
WP_016715442.1\|1349799_1350450_+	response regulator transcription factor	NA	NA	NA	NA
WP_004375479.1\|1350523_1350889_+	diacylglycerol kinase	NA	NA	NA	NA
WP_170028696.1\|1350885_1351812_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023381933.1\|1351932_1352712_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_170028697.1\|1352799_1353294_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_003252385.1\|1353419_1354019_-	YIP1 family protein	NA	NA	NA	NA
WP_170028698.1\|1354281_1355106_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.0e-105	71.6

DBSCAN-SWA_3

3461238 : 3540847

107

uncultured_Caudovirales_phage(47.76%)

tail,protease,bacteriocin,terminase,tRNA,integrase

attL 3476495:3476554|attR 3531901:3531965

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_170030454.1\|3461238_3462264_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	7.7e-22	30.4
WP_170030455.1\|3462461_3463172_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_003257405.1\|3463228_3463546_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_170030456.1\|3463895_3464963_+	phosphotransferase family protein	NA	NA	NA	NA
WP_170030457.1\|3464998_3465766_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.7e-18	31.7
WP_170030458.1\|3465766_3466588_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_170030459.1\|3466781_3467132_-	hypothetical protein	NA	NA	NA	NA
WP_170030460.1\|3467246_3467537_+	RcnB family protein	NA	NA	NA	NA
WP_170034206.1\|3467669_3467864_+	hypothetical protein	NA	NA	NA	NA
WP_170030461.1\|3467935_3468322_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_170030462.1\|3468460_3470290_+	SLC13 family permease	NA	NA	NA	NA
WP_170034208.1\|3470429_3471854_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.5e-18	32.2
WP_170030463.1\|3471855_3472617_-	TSUP family transporter	NA	NA	NA	NA
WP_170030464.1\|3472715_3473621_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_170030465.1\|3474159_3474738_+	cysteine hydrolase	NA	NA	NA	NA
WP_170030466.1\|3474887_3475931_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_170030467.1\|3476225_3476411_+	hypothetical protein	NA	NA	NA	NA
3476495:3476554	attL	NA	NA	NA	NA
WP_170034210.1\|3477208_3478783_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.5e-20	36.0
WP_170030468.1\|3479069_3479279_-	hypothetical protein	NA	NA	NA	NA
WP_170034212.1\|3479278_3479572_-	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	2.5e-34	70.1
WP_170030469.1\|3479682_3480348_+	SOS response-associated peptidase	A0A2H4J991	uncultured_Caudovirales_phage	1.0e-91	68.9
WP_170030470.1\|3480341_3480566_-	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	4.2e-26	79.7
WP_170030471.1\|3480608_3481121_-	DUF2514 family protein	NA	NA	NA	NA
WP_170030472.1\|3481117_3481561_-	structural protein P5	A0A2H4J6R1	uncultured_Caudovirales_phage	4.8e-37	55.0
WP_170034214.1\|3481617_3482013_-\|tail	tail fiber assembly protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.2e-34	59.8
WP_170030473.1\|3482210_3482990_-\|tail	phage tail protein	A0A0S2SY45	Pseudomonas_phage	3.9e-50	47.2
WP_170030474.1\|3483002_3483875_-	hypothetical protein	NA	NA	NA	NA
WP_170030475.1\|3483874_3484189_-	hypothetical protein	NA	NA	NA	NA
WP_170030476.1\|3484185_3488178_-	DUF1983 domain-containing protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	57.7
WP_170030477.1\|3488235_3488865_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	7.4e-68	65.9
WP_170030478.1\|3488907_3489258_-	hypothetical protein	NA	NA	NA	NA
WP_170030479.1\|3489287_3490043_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	4.5e-120	76.1
WP_170030480.1\|3490045_3490795_-\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	2.1e-122	77.1
WP_170030481.1\|3490804_3491143_-\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	6.8e-44	73.2
WP_170030482.1\|3491142_3494580_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	4.8e-217	41.7
WP_170034216.1\|3494583_3494835_-	DUF1799 domain-containing protein	A0A2H4JBP7	uncultured_Caudovirales_phage	1.3e-28	77.8
WP_170030483.1\|3494897_3495281_-	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	2.0e-36	55.9
WP_170030484.1\|3495290_3495950_-\|tail	phage tail protein	A0A2H4J591	uncultured_Caudovirales_phage	3.8e-83	68.7
WP_170030485.1\|3495989_3496418_-	hypothetical protein	A0A2H4J5P1	uncultured_Caudovirales_phage	1.7e-68	93.5
WP_170030486.1\|3496414_3497086_-	hypothetical protein	A0A2H4J0Q3	uncultured_Caudovirales_phage	4.8e-57	51.8
WP_170030487.1\|3497088_3497475_-	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	1.6e-36	59.2
WP_170030488.1\|3497476_3497845_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	2.4e-26	54.3
WP_170030489.1\|3497844_3498141_-	hypothetical protein	NA	NA	NA	NA
WP_170030490.1\|3498183_3499152_-	hypothetical protein	A0A0H5ARK0	Pseudomonas_phage	2.2e-143	80.1
WP_170030491.1\|3499161_3499908_-	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	3.3e-91	76.0
WP_170030492.1\|3500168_3500579_+	hypothetical protein	NA	NA	NA	NA
WP_170030493.1\|3500611_3501688_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	2.1e-102	54.3
WP_170030494.1\|3501687_3503094_-	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	4.7e-179	66.5
WP_170030495.1\|3503096_3504395_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.6e-149	60.9
WP_170030496.1\|3504381_3504843_-	DUF2280 domain-containing protein	A0A0S2SY97	Pseudomonas_phage	1.8e-47	73.3
WP_170034218.1\|3504874_3505471_-	hypothetical protein	A0A0S2SYA5	Pseudomonas_phage	7.5e-94	80.8
WP_170030497.1\|3505605_3505848_+	hypothetical protein	NA	NA	NA	NA
WP_170030498.1\|3506004_3506316_-	hypothetical protein	A0A1W6JT10	Escherichia_phage	3.3e-08	41.9
WP_170030499.1\|3506312_3506639_-	MFS transporter	A0A088FVG2	Escherichia_phage	2.2e-23	54.7
WP_170034220.1\|3506806_3507085_+	hypothetical protein	NA	NA	NA	NA
WP_170030500.1\|3507238_3507442_-	hypothetical protein	NA	NA	NA	NA
WP_170030501.1\|3507550_3508240_-	hypothetical protein	Q9MC44	Pseudomonas_phage	2.5e-48	46.6
WP_170030502.1\|3508236_3508383_-	hypothetical protein	NA	NA	NA	NA
WP_170030503.1\|3508379_3508979_-	recombination protein NinG	A0A2H4JGI2	uncultured_Caudovirales_phage	3.2e-60	60.5
WP_170030504.1\|3508975_3509446_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	3.8e-61	69.2
WP_170030505.1\|3509442_3509661_-	hypothetical protein	NA	NA	NA	NA
WP_170030506.1\|3509657_3510464_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	5.6e-60	53.2
WP_170030507.1\|3510450_3511356_-	helix-turn-helix domain-containing protein	A0A1B0VME0	Pseudomonas_phage	2.2e-52	68.9
WP_170030508.1\|3511352_3511649_-	hypothetical protein	A0A0S2SY28	Pseudomonas_phage	1.6e-28	58.8
WP_170030509.1\|3511645_3512446_-	Rha family transcriptional regulator	A0A2I7RX10	Vibrio_phage	4.3e-52	47.8
WP_085598710.1\|3512817_3513012_-	hypothetical protein	B5WZX7	Pseudomonas_phage	8.5e-07	56.1
WP_170030510.1\|3513042_3513291_-	helix-turn-helix domain-containing protein	A0A2D1GND2	Pseudomonas_phage	2.1e-26	82.2
WP_170030511.1\|3513387_3514230_+	S24 family peptidase	A0A2D1GNH0	Pseudomonas_phage	1.8e-109	68.9
WP_170030512.1\|3514329_3514644_+	hypothetical protein	NA	NA	NA	NA
WP_170034222.1\|3514786_3515356_+	hypothetical protein	NA	NA	NA	NA
WP_170030513.1\|3515542_3516034_+	hypothetical protein	NA	NA	NA	NA
WP_170030514.1\|3516084_3516693_-	hypothetical protein	NA	NA	NA	NA
WP_170030515.1\|3516761_3517088_-	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	2.1e-29	67.6
WP_170030516.1\|3517564_3517813_+	hypothetical protein	NA	NA	NA	NA
WP_170030517.1\|3518348_3518627_+	hypothetical protein	NA	NA	NA	NA
WP_170030518.1\|3518653_3518845_+	hypothetical protein	A0A2H4J1U4	uncultured_Caudovirales_phage	2.2e-31	96.8
WP_170030519.1\|3518865_3519294_+	hypothetical protein	A0A1B0VMC3	Pseudomonas_phage	2.6e-16	37.7
WP_170030520.1\|3519290_3519482_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	9.2e-14	55.6
WP_170030521.1\|3519478_3519745_+	hypothetical protein	A0A2H4J1S2	uncultured_Caudovirales_phage	4.1e-20	57.5
WP_170030522.1\|3519924_3520161_+	hypothetical protein	NA	NA	NA	NA
WP_170030523.1\|3520359_3521091_+	hypothetical protein	A0A2H4J2D5	uncultured_Caudovirales_phage	8.8e-113	84.4
WP_170030524.1\|3521087_3521651_+	siphovirus Gp157 family protein	A0A2H4IZG3	uncultured_Caudovirales_phage	3.9e-92	95.2
WP_170030525.1\|3521658_3522201_+	hypothetical protein	A0A2H4J7C8	uncultured_Caudovirales_phage	3.1e-06	29.1
WP_170030526.1\|3522282_3522648_+	hypothetical protein	A0A2H4J0L9	uncultured_Caudovirales_phage	1.5e-57	91.7
WP_170030527.1\|3522622_3522985_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	1.1e-12	51.3
WP_170030528.1\|3523073_3524075_+	site-specific DNA-methyltransferase	A0A1B0VM49	Pseudomonas_phage	1.6e-117	61.4
WP_170030529.1\|3524121_3526056_+	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	3.0e-301	74.8
WP_170030530.1\|3526052_3526361_-	hypothetical protein	NA	NA	NA	NA
WP_170030531.1\|3526761_3527067_-	hypothetical protein	NA	NA	NA	NA
WP_170034224.1\|3527944_3528136_+	hypothetical protein	NA	NA	NA	NA
WP_170030532.1\|3528132_3528384_+	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	1.7e-39	94.0
WP_170030533.1\|3528380_3528689_+	hypothetical protein	NA	NA	NA	NA
WP_170030534.1\|3528685_3529102_+	DUF2591 family protein	J7I4M3	Pseudomonas_phage	2.0e-13	37.1
WP_170030535.1\|3529145_3529919_+	site-specific DNA-methyltransferase	A0A0H5BBV5	Pseudomonas_phage	6.3e-101	70.1
WP_170030536.1\|3529970_3530447_+	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	1.6e-38	56.0
WP_170030537.1\|3530486_3530732_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_170030538.1\|3530733_3531795_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.0e-106	59.1
WP_003251184.1\|3532126_3532798_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0
3531901:3531965	attR	NA	NA	NA	NA
WP_170030539.1\|3532970_3534350_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	7.4e-28	51.8
WP_170030540.1\|3534604_3534997_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	7.2e-53	79.8
WP_170030541.1\|3534998_3535358_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	9.5e-36	65.0
WP_170030542.1\|3535357_3535654_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.9e-26	62.6
WP_170030543.1\|3535650_3535986_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	9.8e-43	75.7
WP_170030544.1\|3535982_3536984_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	8.3e-154	79.3
WP_170030545.1\|3537078_3538038_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_170030547.1\|3538174_3539566_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_170030549.1\|3539566_3540847_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-95	54.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP051857

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection