CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019928	Bordetella avium strain SV1 chromosome, complete genome	1 crisprs	WYL,csa3,DinG,DEDDh	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019928_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019928_1

147992-148097

Orphan

Consensus_repeat	Method
GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019928_1

>merge|NZ_CP019928|1|147992-148097|CRISPRCasFinder
GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTGTCGCCTGCTTGCTGCCCCCCCGCCTTGGGGCGGCCCGGCGGCGGGTGTGTTGCCCCCTACGCTGCGCAGGCTTG

>NZ_CP019928|1|1|147992-148097|CRISPRCasFinder
GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTG	TCGCCTGCTTGCTGCCCCCCCGCCTTGGGGCGGCCCGGCGGC
GGGTGTGTTGCCCCCTACGCTGCGCAGGCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019928.1\|WP_039051819.1\|152545_153472_+\|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238557
NZ_CP019928.1\|WP_012415840.1\|141977_142844_+\|D-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|238799
NZ_CP019928.1\|WP_114851588.1\|157131_158109_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP019928.1\|WP_012415839.1\|140566_141826_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP019928.1\|WP_012415849.1\|148798_149896_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NZ_CP019928.1\|WP_012415838.1\|139786_140434_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP019928.1\|WP_039051820.1\|153432_154098_+\|DUF1007-family-protein	unknown	unknown	gnl\|CDD\|368801
NZ_CP019928.1\|WP_012415846.1\|146033_147368_-\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NZ_CP019928.1\|WP_012415848.1\|148215_148680_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NZ_CP019928.1\|WP_012415852.1\|151661_152543_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP019928.1\|WP_012415850.1\|150236_150728_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP019928.1\|WP_114851586.1\|144934_145498_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
NZ_CP019928.1\|WP_012415845.1\|145620_145926_+\|copper-binding-protein	unknown	unknown	gnl\|CDD\|378683
NZ_CP019928.1\|WP_012415841.1\|142895_143168_+\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179360
NZ_CP019928.1\|WP_012415856.1\|155107_157138_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NZ_CP019928.1\|WP_012415851.1\|150951_151665_+\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NZ_CP019928.1\|WP_012415842.1\|143171_143825_+\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|172825
NZ_CP019928.1\|WP_012415847.1\|147394_147934_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP019928.1\|WP_012415843.1\|143878_144874_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP019928.1\|WP_012415855.1\|154094_155012_+\|nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225125

Protein	Function_ID	Function_description	E-value
NZ_CP019928.1\|WP_039051819.1\|152545_153472_+\|metal-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	3.63823e-130
NZ_CP019928.1\|WP_012415840.1\|141977_142844_+\|D-amino-acid-aminotransferase	gnl\|CDD\|238799	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.	1.92675e-121
NZ_CP019928.1\|WP_114851588.1\|157131_158109_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.04725e-139
NZ_CP019928.1\|WP_012415839.1\|140566_141826_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.23282e-153
NZ_CP019928.1\|WP_012415849.1\|148798_149896_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	5.79359e-122
NZ_CP019928.1\|WP_012415838.1\|139786_140434_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	5.11582e-55
NZ_CP019928.1\|WP_039051820.1\|153432_154098_+\|DUF1007-family-protein	gnl\|CDD\|368801	pfam06226, DUF1007, Protein of unknown function (DUF1007). Family of conserved bacterial proteins with unknown function.	3.48672e-60
NZ_CP019928.1\|WP_012415846.1\|146033_147368_-\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_CP019928.1\|WP_012415848.1\|148215_148680_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	1.3819e-48
NZ_CP019928.1\|WP_012415852.1\|151661_152543_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	3.23273e-55
NZ_CP019928.1\|WP_012415850.1\|150236_150728_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.09365e-40
NZ_CP019928.1\|WP_114851586.1\|144934_145498_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	2.82698e-76
NZ_CP019928.1\|WP_012415845.1\|145620_145926_+\|copper-binding-protein	gnl\|CDD\|378683	pfam11604, CusF_Ec, Copper binding periplasmic protein CusF. CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein.	5.42886e-21
NZ_CP019928.1\|WP_012415841.1\|142895_143168_+\|YbeD-family-protein	gnl\|CDD\|179360	PRK02047, PRK02047, hypothetical protein; Provisional.	1.41556e-59
NZ_CP019928.1\|WP_012415856.1\|155107_157138_+\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	2.02119e-47
NZ_CP019928.1\|WP_012415851.1\|150951_151665_+\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	2.63155e-81
NZ_CP019928.1\|WP_012415842.1\|143171_143825_+\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|172825	PRK14349, PRK14349, lipoyl(octanoyl) transferase LipB.	4.45849e-137
NZ_CP019928.1\|WP_012415847.1\|147394_147934_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.2869e-127
NZ_CP019928.1\|WP_012415843.1\|143878_144874_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP019928.1\|WP_012415855.1\|154094_155012_+\|nickel/cobalt-transporter	gnl\|CDD\|225125	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.53898e-54

>NZ_CP019928.1|WP_012415847.1|147394_147934_-|ATP-dependent-protease-subunit-HslV
MEQFHATTIVCVRRGNRVALGGDGQVTLGNIVIKGTARKIRRLYHDKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVADAEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPETIVKQSLEIAGDLCIYTNQNHVIETLGG
>NZ_CP019928.1|WP_012415846.1|146033_147368_-|ATP-dependent-protease-ATPase-subunit-HslU
MSASTMTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVADPLRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEFSIKQTRELEMRRVRSHAEDAAEDRILDVLVPPARNAMGEPQRDDGNTTRQTFRKRLREGSLDDLEIEIDIAQATPQLDVMTPPGMEEMAEQLRGMFAGLARDKTKPKKIKVKEAFKLIIEEEAAKRVNEDDLRAAAIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHILFIASGAFHLSRPSDLIPELQGRFPIRVELDSLSADDFVRILSETDASLVKQYTALLATEDVQLAFTEDGIKRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDAGASSGQSVTIDAAYVDAQLSEAASSQDLARYVL
>NZ_CP019928.1|WP_012415845.1|145620_145926_+|copper-binding-protein
MAFLRKHTMPAVMATAAAFVSLASPQVLAQTAQASGEVRRIDATAGTVTLKHDAIAALDLPAMTLVYQAAPALLTNIKPGDKVRFTATRQDGRYVVTAISK
>NZ_CP019928.1|WP_114851586.1|144934_145498_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MANRLSVITTRTGDDGSTGLGDGSRVPKDDPRIMALGDVDEFNSTLGLLRCEALPDEVSADLLTIQHDLFDMGTELCIPGHAALSDEQVAYLDARLAFYNAALPPLREFILPGGTRAAALAHLARTAARRAERSVIALAAQAAVNAPLCQYLNRSSDLMFVLARYLNQSQGQADIYWSSRHSRVSGA
>NZ_CP019928.1|WP_012415843.1|143878_144874_+|lipoyl-synthase
MSTQLDASQPSNDVASPAAYDPTQKQKSQAKTARIPIKVIPAERLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPLDAQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAHFVECITKIRELSPITRIEVLVPDFRGRLDRALAILNAGPPDVMNHNLETVPRLYKQARPGSDYLHSLKLLAEFKALHPDVPTKSGLMLGLGETDEEILEVMRDMRAHNVDMITIGQYLQPSEHHLPVLRYVHPDTFAMFEREAYAMGFSHAAVGAMVRSSYHADEQAHAAGVN
>NZ_CP019928.1|WP_012415842.1|143171_143825_+|lipoyl(octanoyl)-transferase-LipB
MSMNVAWLSPGAAYADVWEAMKAFTASRGPATPDEIWLCEHAPVYTLGQAGLPQHVLNPADIAVVRSDRGGQVTYHGPGQIVVYCLFDLRRAGMYVRDYVALLEETAIAVLGRAGIVAQRKPGAPGVYVEQPGQTLAKIAALGIKIRKGCAYHGLSLNVAMDLTPFHGINPCGYEGLQTTDMASCGLSCSVHEVGQALADELVRRLSAYQGSLSSGE
>NZ_CP019928.1|WP_012415841.1|142895_143168_+|YbeD-family-protein
MQIPPEDSLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPDFDPAKLEMRPSKGGNYLGLTFTVRATSREQLDALYRALHGHPMVSIVL
>NZ_CP019928.1|WP_012415840.1|141977_142844_+|D-amino-acid-aminotransferase
MIPGMPGDSLVYLNGEYTRADQAKISVLDRGFIFGDGIYEVVPAYRGKAFRITEHLNRLERSLAAIRIAMPMDRAALTALIERLIAGATTPECMVYLQVTRGVYKRDHAFPAEAIAPTVFGMVTPMTPPSALQREQGVSVVSIKDERWLHCDIKSVSLLGNVLARQQAVEADADEVIQYRDGYLTEGSSSNIWIVRDGKLLAPPKNNLILEGIRYGLMAELAQEGGVVFEARPISRAEVETADEILITSATKEVLPVLKRDGQVVGDGKPGPVYRLLRAGYDARIAAL
>NZ_CP019928.1|WP_012415839.1|140566_141826_+|D-alanyl-D-alanine-carboxypeptidase
MKTLSQSAFAPSVFSRRVISSAVLAVMLAASLPAAAQQQAPAAAAPATSTPAPATAAVATVGELAAVPAPTIAARAWIAIDVNSGQVLAASNPDQKVEPASLTKVMTAYVVFNALDEKRLTLDQQVPVSQHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSETAFAALMNEQAERLGMKGTHFMNATGLPDPQHITTVRDLATLATHLVSDHPEYYHYYKQKGFTYNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLISTALRGDRRVLTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDKSQPGLDARVWEGKAENVKLGPPNPVWLAVPRGKGNEIKPIAQRTDPLVAPLAKGQQVGTLEFTLDGKVLRTEPLVVQEDVERAGFFGRMTDTVKRWFH
>NZ_CP019928.1|WP_012415838.1|139786_140434_+|alpha/beta-hydrolase
MSARTEILAFSGAAGRIDCAFDYPDGEPIGWALVLHPHPLHGGARDNKVVTTIARACANAGLIVVRPNFRGVGDSEGGFDRAVGETEDMLGLIPQIRQTLPELADAPWVLGGFSFGTAVAAQVYAMLAEQGAAPQALMLMGPAVARFQFRAVELPEDTLVVHGEVDEVVPLAEAMDWARPLKLPVVVIPGASHFFHGKLLSLRNLVAQRLKLALG
>NZ_CP019928.1|WP_012415848.1|148215_148680_-|RNA-polymerase-binding-protein-DksA
MATKAVTKKSSKSTSDTAIDLPSEEELLAMPESDYMNERQLAFFKERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQAIVRIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD
>NZ_CP019928.1|WP_012415849.1|148798_149896_-|GTP-binding-protein
MNTPRSLDKMVPVTILTGFLGAGKTTLLKRILTEFHGRRVAVIENEFGPESIDNDLLVQDSDEEIIELSNGCVCCTVRGDLMRTLNELRVKREAGQLSFERVIIETTGMANPGPVCQTFFMDDDIADYYRLDAVVTVVDAKHGMATLDAQEEAQKQVGFADRILVSKRDLVNDADYEALRARLLRINPRAPITPVHFGEVELKSIIDISGFNLNSILDIDPDFLADEHPDAKHAHDHDHDHHDHEHAGECGAHCDHAHHHHHHQHNDEIGAFVFRSNKPFDPARLEEFLGGVVQVYGPDLMRYKGILYMKGINRRMLFQGVHMMMGAEPGKPWTAAEKPSTKMVFIGRKLPQEIFTRGLEQCLVG
>NZ_CP019928.1|WP_012415850.1|150236_150728_-|transcriptional-repressor
MSAPARTSRADAVGEQLRLAESLCAERGRRLTPIRRKVLELLLTHGRSLKAYELLDAMRAVHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWTACHDAAGAPHDLLVVCTGCGAVAEISDPAMSRLLAERVAQTGFALATHETEIRALCPQCQKNAPAAHHHH
>NZ_CP019928.1|WP_012415851.1|150951_151665_+|metal-ABC-transporter-ATP-binding-protein
MGHVVTPAAIELESVTFGWRGQPAVRDVSGRFAPGCMTAIIGPNGAGKSTLVKGLAGVLAPMSGRLHRDSTSVAWLPQAAELDRDFPICVLDAVVLGGWRRIGALRAVDGDETARARLALRRVGLEQLAERPLQALSGGQLQRVLFARLLMQDAPVLVLDEPFAAVDGQTTRVLMALLCALQAEGRSIIAVLHDMALVKEYFAQALLLSGRVLAWGPTADVLSPERLAHGQLHLGYA
>NZ_CP019928.1|WP_012415852.1|151661_152543_+|metal-ABC-transporter-permease
MTLWQALCAPFFDFSFMRRALAGAVALAFGAAPLGVFLVLRRMSLMGDAMSHAILPGVAAGYLLAGLSLGAMMAGGIVTGLVVALLSGLVTRLTSLREDASFAAFYLISLALGVLLVSLRGSNVDLLHVLFGTVLGLGDDALLLAGLVSTLTLFSLALIYRLLVAECFDPGFLRAAGGRGWLAHFGFLALVVINLVAGFQILGTLMVVGMMMLPALAARFWARRVAAQLPLAVVLAALASWCGLLASFHFDLAASPAIILAAGLIYLLSMVLGPQGGLRTRLRWPRPALSKEV
>NZ_CP019928.1|WP_039051819.1|152545_153472_+|metal-ABC-transporter-substrate-binding-protein
MKLVWARCAAIAVLSILPAVAVWASPVKVVTSFSILQDMAREIGGPDVEVQTLVGPDGDAHGFEPSAADSRKLAGADLLVINGLGFEPWLPRLVEASGFKGREVRASDGVKPRAFAEALDHEDHDHGHDHHHDVQDPHAWQDLRNGMIYAQNIGRALEQLDPAHAAQYQQRTRAYVAKLEALQAKVEKTFAAIPAERRKVVSTHDAFAYFGEAYGVRFIPVAGLSTLSEPSASGFAEVVKRVKREHVPALFIENIGNPRLAEQIARETGAKVGGTLYSDALSAPGKPGATYLGMFEWNVQQLAAALQP
>NZ_CP019928.1|WP_039051820.1|153432_154098_+|DUF1007-family-protein
MERAAIGRCLAALTLVILPISALAHPHMWVDAQAEVMFDDQGRVAALRQVWLFDEMFGAYATQGLPRAADGGLAEDTRKTMAIDWMKALGEPISHYFTRVTREGATLAFGAPRDAQVQWDGQRLSLAFTLPLAQPVAPGPQGLAIDVFDPTYFVAYAFDAPKAWRLSNAPANCRQTYRPPQPLDWKTMQQLAAIPSNVDTLPDELFAITKGLTHRNELRCP
>NZ_CP019928.1|WP_012415855.1|154094_155012_+|nickel/cobalt-transporter
MRSAARIVPWMLVFALALAAGQVWAQSHPFAVPEAGGSPWLAQISVWQSHFYRQLTGAVRAWRDDGSWLLVGLSFAYGVFHALGPGHGKAVISAFVLANHQSARNGAVLALLSALVQALVAIALVALLAAVFNVTAQVMNAGTRWLEMASYLMIVALGVWLLWTKALRPWLRPGRRHLHHAACGCGHVPPLSLMSGRLDWRRAWTAVVAVGLRPCSGALIVLVFALSQGLFAAGVVATLAMGLGTGLTVALLAMTAVWTRNALTNSSYLSPKWAARLRYGIESVAALAVLLLGLLLLGGQVAGAA
>NZ_CP019928.1|WP_012415856.1|155107_157138_+|TonB-dependent-receptor
MRFTSRPSHAALAMAFAAAPVFAAEPEAVTLTPITISADPLGQNQNSTASPVTVLDGQALVERRQGTLGDTLNGLPGVHSDTFGAGASRPVIRGQTSPRVSVLSDGSSLLDASAISPDHAITIEPLLADRIEVLRGPATLRFGGGSIGGVVNVLDKRIPTEKPEGGLAAEAELRGATGTKERAGIIGITAGTDSFVVRVEGLKRRSSDYAVPHWSSGKLAGSYSESTQGSVGMSWIGPRGYIGLAFTHIESEYGLPGHNHEYEGCHPHGTHLHCGHHDHDHDHDDHAHEEGQVPYVRLRSNRTDLRAEYSDPLPGFSKLRLRGGFTDYQHDEIEGGQVGTTFKNQGFDTRLELEHKPWMGLRGVIGLQTAFSDFRAQGEEAFLPRSKTRSNGLFLLEEYRLNDWRFEAGARQDWQSISPEGGLKKSRLSGTSLSAAAIWDFAPSYSVALSLSRSQRMPSAQELYADGVHLATNTYEIGNAGLTRETSRNIDLTLRKHEGDTTFSLSAFHNRVNNYIYANTLDRFEDFRLIEYTQKDAEFVGIEGELKHQFTPILSAGVFGDYVRGKLTGGQGNLPRIPAARLGARANFKWQAWSGGLEYAYVFRQKDIASYESETPGYALVNAVLSYRFKAAGAQYDVYVRGNNLLDKLAYNHASFLSSVAPLPGRSVMLGVRMSY
>NZ_CP019928.1|WP_114851588.1|157131_158109_-|tyrosine-recombinase-XerC
MSLLAPPLEDWLQHLQTQRRYSSHTLAAYRHDLESLAALATQAGLALQDLSVSHIRQQIARLHAQGLGPRSLARRLAAWRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQAQAMLDHAPAQLSTDPVGLRDHAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWLNRAEAEVVVLGKGGKRRIVPVGSAALAALDKWLQARPTLLSAATPSADSYALFLGARGARISPRVVQLQLARLAQQAGVPAHVHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDQAHPRANRKPEDNSDQ

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1414768 : 1423510

Lake_Baikal_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012417171.1\|1414768_1414975_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-15	59.1
WP_012417172.1\|1415044_1415623_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	1.8e-23	34.3
WP_012417173.1\|1415802_1417113_+	trigger factor	NA	NA	NA	NA
WP_012417174.1\|1417115_1417769_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.5e-55	55.9
WP_012417175.1\|1417872_1419171_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.8e-129	56.2
WP_012417176.1\|1419345_1421778_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.5e-220	52.0
WP_012417177.1\|1422013_1423510_-	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	4.1e-16	28.5

DBSCAN-SWA_2

1990069 : 2001103

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114851977.1\|1990069_1991500_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.4e-29	26.4
WP_114851976.1\|1991648_1992161_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_012417644.1\|1992264_1993044_-	3'-5' exonuclease	NA	NA	NA	NA
WP_012417645.1\|1993040_1993892_-	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	9.2e-13	40.3
WP_169507425.1\|1993909_1994704_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-32	45.7
WP_012417647.1\|1994688_1995447_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	52.0
WP_012417648.1\|1995616_1996255_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_114851975.1\|1996407_1997445_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.0e-95	52.9
WP_114851974.1\|1997543_1998836_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	5.8e-67	36.3
WP_012417651.1\|1998989_2000003_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_114851972.1\|2000114_2000498_+	thioredoxin	V9SJ74	Achromobacter_phage	1.5e-10	27.6
WP_114852034.1\|2000500_2001103_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	7.4e-17	48.6

DBSCAN-SWA_3

2381198 : 2405751

Burkholderia_phage(30.0%)

terminase,tail,holin,capsid,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114852916.1\|2381198_2381453_-\|holin	holin	A0A0U1UNM6	Pseudomonas_phage	9.4e-14	49.3
WP_162790410.1\|2381691_2382840_-	hypothetical protein	NA	NA	NA	NA
WP_114852915.1\|2382842_2383493_-	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	2.6e-39	40.8
WP_114852914.1\|2383489_2384680_-\|plate	baseplate J/gp47 family protein	Q6IWQ3	Burkholderia_phage	6.3e-68	42.3
WP_114852913.1\|2384672_2385017_-	hypothetical protein	NA	NA	NA	NA
WP_114852912.1\|2385013_2385721_-	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	1.5e-32	36.2
WP_114852911.1\|2385705_2386533_-	hypothetical protein	Q6IWQ0	Burkholderia_phage	6.0e-41	38.1
WP_114852910.1\|2386522_2386834_-	hypothetical protein	I7A8L4	Escherichia_phage	9.2e-11	38.0
WP_114852909.1\|2386821_2387373_-	hypothetical protein	NA	NA	NA	NA
WP_119529822.1\|2387369_2388983_-\|tail	phage tail protein	NA	NA	NA	NA
WP_114852906.1\|2389103_2389529_-	hypothetical protein	Q6IWV4	Burkholderia_phage	4.9e-23	47.1
WP_114852905.1\|2389540_2390002_-	hypothetical protein	A1Z014	Burkholderia_virus	5.9e-30	45.1
WP_119529821.1\|2390061_2391570_-	DUF3383 domain-containing protein	I7B2P4	Escherichia_phage	4.7e-76	38.0
WP_119529820.1\|2391578_2392106_-	hypothetical protein	NA	NA	NA	NA
WP_119529819.1\|2392086_2392470_-	hypothetical protein	NA	NA	NA	NA
WP_114852901.1\|2392466_2392943_-	hypothetical protein	A0A077KC03	Edwardsiella_phage	1.2e-22	42.8
WP_012417001.1\|2392939_2393365_-	DUF4054 domain-containing protein	A0A088C3T8	Shewanella_sp._phage	4.4e-16	36.8
WP_162790409.1\|2393363_2393783_+	hypothetical protein	NA	NA	NA	NA
WP_012416999.1\|2393817_2394897_-	DUF2184 domain-containing protein	A0A2H4P6S2	Pseudomonas_phage	1.4e-53	39.5
WP_114852899.1\|2394912_2395380_-	hypothetical protein	NA	NA	NA	NA
WP_115600699.1\|2395382_2396633_-	DUF2213 domain-containing protein	A0A088C4R4	Shewanella_sp._phage	4.8e-34	39.0
WP_115600698.1\|2396625_2397474_-\|capsid	minor capsid protein	Q6IWU3	Burkholderia_phage	1.1e-42	37.5
WP_119651597.1\|2397418_2398894_-	DUF1073 domain-containing protein	B5M9R6	Pseudomonas_phage	1.8e-101	43.1
WP_115600696.1\|2398890_2400228_-\|terminase	phage terminase large subunit	A0A0D4DCE6	Acinetobacter_phage	6.1e-144	61.7
WP_115600695.1\|2400292_2400727_-\|terminase	terminase small subunit	E5AGA2	Erwinia_phage	2.1e-37	63.4
WP_115600694.1\|2400764_2401133_-	hypothetical protein	NA	NA	NA	NA
WP_115600693.1\|2401207_2401714_-	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	1.1e-26	45.3
WP_114852977.1\|2401904_2402171_+	BrnT family toxin	NA	NA	NA	NA
WP_114852978.1\|2402157_2402436_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-08	59.2
WP_115600692.1\|2403090_2403492_-	hypothetical protein	NA	NA	NA	NA
WP_115600690.1\|2403978_2404356_-	endonuclease	NA	NA	NA	NA
WP_115600689.1\|2404356_2405751_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	9.0e-98	47.6

DBSCAN-SWA_4

2890029 : 2916167

Burkholderia_phage(35.71%)

capsid,plate,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147294789.1\|2890029_2890878_+	hypothetical protein	A0A0R6PIN1	Moraxella_phage	1.0e-24	28.9
WP_115600672.1\|2891172_2891673_-	DUF2514 family protein	Q3HQV1	Burkholderia_phage	4.4e-07	59.6
WP_115600671.1\|2891651_2892107_-	lysozyme	A0A0U4JP67	Pseudomonas_phage	4.6e-43	64.6
WP_169507442.1\|2892402_2893014_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	8.9e-18	34.1
WP_114852892.1\|2893025_2893919_-\|tail	tail fiber protein	A0A193GYM0	Enterobacter_phage	1.3e-25	42.3
WP_114852891.1\|2893921_2894593_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	2.1e-52	46.9
WP_114852890.1\|2894600_2895779_-\|plate	baseplate J/gp47 family protein	A9YX12	Burkholderia_phage	2.4e-99	52.2
WP_114852889.1\|2895775_2896129_-	hypothetical protein	A0A0P0IVU6	Acinetobacter_phage	8.8e-26	49.6
WP_114852888.1\|2896136_2896883_-	hypothetical protein	A9YX06	Burkholderia_phage	3.0e-68	53.0
WP_114852887.1\|2896875_2897802_-	hypothetical protein	A9YX04	Burkholderia_phage	3.0e-65	46.8
WP_114852886.1\|2897805_2898111_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	2.7e-15	38.6
WP_114852885.1\|2898107_2898686_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	4.2e-25	40.9
WP_114852884.1\|2898682_2900362_-\|tail	phage tail tape measure protein	A0A0M4REK7	Salmonella_phage	7.1e-49	40.5
WP_114852882.1\|2900548_2900944_-	hypothetical protein	NA	NA	NA	NA
WP_114852881.1\|2900944_2901388_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	1.1e-38	56.6
WP_119536217.1\|2901398_2902883_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	5.0e-139	53.2
WP_114852879.1\|2902942_2903527_-	hypothetical protein	A9YX29	Burkholderia_phage	9.1e-44	47.4
WP_114852878.1\|2903530_2903902_-	hypothetical protein	A9YX28	Burkholderia_phage	1.7e-35	62.6
WP_114852877.1\|2903904_2904390_-	hypothetical protein	A0A2H4J488	uncultured_Caudovirales_phage	1.7e-35	49.1
WP_114852876.1\|2904398_2904782_-	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	1.3e-35	56.7
WP_114852875.1\|2904785_2904989_-	hypothetical protein	NA	NA	NA	NA
WP_114852874.1\|2904999_2905986_-	DUF2184 domain-containing protein	A0A0N7IRF2	Acinetobacter_phage	7.4e-115	66.0
WP_114852873.1\|2906047_2906542_-	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	2.6e-28	46.0
WP_114852872.1\|2906556_2907807_-	DUF2213 domain-containing protein	A0A0P0IRE1	Acinetobacter_phage	1.8e-81	48.8
WP_114852871.1\|2907877_2908675_-\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	8.5e-69	52.6
WP_114852870.1\|2908607_2910062_-	DUF1073 domain-containing protein	A0A0P0I486	Acinetobacter_phage	8.9e-149	57.7
WP_119536218.1\|2910072_2911668_-	TerL protein	A9YWZ6	Burkholderia_phage	4.0e-243	74.7
WP_169507443.1\|2911669_2912110_-\|terminase	terminase small subunit	E5AGA2	Erwinia_phage	6.2e-37	61.0
WP_115600694.1\|2912147_2912516_-	hypothetical protein	NA	NA	NA	NA
WP_119651613.1\|2912590_2913097_-	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	1.1e-26	45.3
WP_115600738.1\|2913506_2913908_-	hypothetical protein	NA	NA	NA	NA
WP_169507445.1\|2914394_2914772_-	endonuclease	NA	NA	NA	NA
WP_169507446.1\|2914772_2916167_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	2.6e-97	47.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage