CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP013104	Bradyrhizobium elkanii USDA 61 plasmid pBel61, complete sequence	0 crisprs	NA	0	0	1	0
NZ_AP013103	Bradyrhizobium elkanii USDA 61	4 crisprs	csa3,DEDDh,WYL,RT,PD-DExK	1	2	13	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5779 : 77037

Mycobacterium_phage(20.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172649301.1\|5779_7131_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.3e-12	27.1
WP_172649302.1\|8824_9136_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_172649303.1\|9197_9374_+	hypothetical protein	NA	NA	NA	NA
WP_172649304.1\|9346_9619_-	WGR domain-containing protein	NA	NA	NA	NA
WP_172649305.1\|9835_10249_+	DNA-binding protein	Q1MVE8	Enterobacteria_phage	6.0e-34	57.0
WP_172649306.1\|10429_10792_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_172649351.1\|11243_12008_+	ParA family protein	F0PIG8	Enterococcus_phage	1.5e-06	23.9
WP_172649307.1\|11997_12981_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_172649308.1\|13399_13918_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_172649309.1\|13914_14988_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_172649310.1\|15555_17652_-	AAA family ATPase	NA	NA	NA	NA
WP_172649311.1\|18112_18373_-	hypothetical protein	NA	NA	NA	NA
WP_172649312.1\|18576_19053_+	hypothetical protein	NA	NA	NA	NA
WP_172649313.1\|19049_22157_+	N-6 DNA methylase	NA	NA	NA	NA
WP_172649314.1\|22153_22822_+	hypothetical protein	NA	NA	NA	NA
WP_172649315.1\|23132_27263_+	Eco57I restriction-modification methylase domain-containing protein	A0A1B1IUC6	uncultured_Mediterranean_phage	8.4e-19	24.5
WP_172649316.1\|27307_28555_+	hypothetical protein	NA	NA	NA	NA
WP_172649317.1\|28813_31963_-	hypothetical protein	NA	NA	NA	NA
WP_172649318.1\|31959_33735_-	hypothetical protein	NA	NA	NA	NA
WP_172649319.1\|33734_35003_-	hypothetical protein	NA	NA	NA	NA
WP_172649320.1\|35667_36393_-	SOS response-associated peptidase family protein	A0A291AUP1	Sinorhizobium_phage	9.5e-35	36.9
WP_172649321.1\|36403_36847_-	hypothetical protein	NA	NA	NA	NA
WP_172649322.1\|36892_37270_-	hypothetical protein	NA	NA	NA	NA
WP_172649323.1\|37415_38348_+	Ku protein	NA	NA	NA	NA
WP_172649324.1\|38412_38916_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_172649325.1\|38912_39377_+	metallophosphoesterase family protein	NA	NA	NA	NA
WP_172649326.1\|39461_40325_-	DNA ligase	A0A2H4JD86	uncultured_Caudovirales_phage	3.7e-25	28.9
WP_172649327.1\|40466_41084_+	cell envelope biogenesis protein TolA	NA	NA	NA	NA
WP_071916635.1\|41299_41752_+	Hsp20 family protein	A0A1B1IW69	uncultured_Mediterranean_phage	2.6e-30	43.5
WP_172649328.1\|41829_42153_+	hypothetical protein	NA	NA	NA	NA
WP_172649329.1\|42165_42339_+	hypothetical protein	NA	NA	NA	NA
WP_172649330.1\|42750_43826_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	5.1e-16	34.2
WP_172649295.1\|43773_44004_-	hypothetical protein	NA	NA	NA	NA
WP_172649331.1\|44003_44924_-	DNA ligase	A0A068CDF3	Rhizobium_phage	4.9e-60	40.5
WP_172649332.1\|45028_45217_+	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_172649333.1\|45991_47398_+	DUF2130 domain-containing protein	NA	NA	NA	NA
WP_172649334.1\|47442_48438_+	hypothetical protein	NA	NA	NA	NA
WP_172649335.1\|49401_50697_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_125459191.1\|52131_52368_-	hypothetical protein	NA	NA	NA	NA
WP_172649301.1\|54992_56344_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.3e-12	27.1
WP_028344440.1\|56917_57307_+	hypothetical protein	NA	NA	NA	NA
WP_155258819.1\|57329_57659_+	hypothetical protein	NA	NA	NA	NA
WP_035633660.1\|59141_59633_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016847835.1\|59918_60125_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.9e-12	54.0
WP_051448161.1\|60699_62724_-	hypothetical protein	NA	NA	NA	NA
WP_080686989.1\|63042_63408_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_028344390.1\|64747_65062_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_028344391.1\|65564_66698_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_155258804.1\|68060_68393_-	hypothetical protein	NA	NA	NA	NA
WP_028344392.1\|68562_69528_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_172649336.1\|69655_71074_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_172649337.1\|71070_73017_+	glycosyltransferase	M1I277	Paramecium_bursaria_Chlorella_virus	1.8e-27	30.2
WP_172649338.1\|74237_74771_-\|transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	8.3e-28	43.6
WP_080686992.1\|74951_75290_-	hypothetical protein	A0A2P1JQX9	Mycobacterium_phage	3.3e-06	42.0
WP_028344400.1\|76011_77037_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	1.3e-05	28.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP013103

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP013103_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013103_1

3111625-3111732

Orphan

Consensus_repeat	Method
CTATTCCGATCGTGGCGCGCCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP013103_1

>merge|NZ_AP013103|1|3111625-3111732|CRISPRCasFinder
CTATTCCGATCGTGGCGCGCCGACCGGTCCGGTGATGTCGCCGGACGATCCGCGCTATGGCCGACCGATGAATGCTCCTCCGGTCTATTCCGACCGTGGCGCGCCGAC

>NZ_AP013103|1|1|3111625-3111732|CRISPRCasFinder
CTATTCCGATCGTGGCGCGCCGAC	CGGTCCGGTGATGTCGCCGGACGATCCGCGCTATGGCCGACCGATGAATGCTCCTCCGGT
CTATTCCGACCGTGGCGCGCCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013103.1\|WP_172647130.1\|3109414_3110272_+\|3-mercaptopyruvate-sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_AP013103.1\|WP_016847778.1\|3108901_3109315_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238724
NZ_AP013103.1\|WP_018273360.1\|3114281_3115931_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_AP013103.1\|WP_172647132.1\|3116786_3117878_-\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NZ_AP013103.1\|WP_100213823.1\|3105591_3107418_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_AP013103.1\|WP_075969456.1\|3110290_3110563_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_026193251.1\|3120900_3121389_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|153099
NZ_AP013103.1\|WP_016843723.1\|3113762_3114008_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_016843730.1\|3120495_3120768_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|381078
NZ_AP013103.1\|WP_016843728.1\|3119289_3119574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_172647127.1\|3100479_3101073_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_AP013103.1\|WP_016847779.1\|3107670_3108846_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226346
NZ_AP013103.1\|WP_172647131.1\|3112681_3113644_-\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_AP013103.1\|WP_016847781.1\|3104565_3105408_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_AP013103.1\|WP_172647133.1\|3117961_3119194_+\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|274067
NZ_AP013103.1\|WP_016843725.1\|3116181_3116766_+\|TIGR00645-family-protein	unknown	unknown	gnl\|CDD\|179964
NZ_AP013103.1\|WP_172647128.1\|3101101_3102745_+\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|235000
NZ_AP013103.1\|WP_016843729.1\|3119810_3120116_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NZ_AP013103.1\|WP_018273366.1\|3099472_3100399_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NZ_AP013103.1\|WP_172647129.1\|3102972_3104475_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983

Protein	Function_ID	Function_description	E-value
NZ_AP013103.1\|WP_172647130.1\|3109414_3110272_+\|3-mercaptopyruvate-sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	1.38e-106
NZ_AP013103.1\|WP_016847778.1\|3108901_3109315_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238724	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.	1.9927e-56
NZ_AP013103.1\|WP_018273360.1\|3114281_3115931_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_AP013103.1\|WP_172647132.1\|3116786_3117878_-\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	1.06391e-17
NZ_AP013103.1\|WP_100213823.1\|3105591_3107418_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.33268e-50
NZ_AP013103.1\|WP_026193251.1\|3120900_3121389_+\|bacterioferritin	gnl\|CDD\|153099	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) bestowing ferroxidase activity.	9.45269e-79
NZ_AP013103.1\|WP_016843730.1\|3120495_3120768_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|381078	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain. This family includes Escherichia coli and Pseudomonas aeruginosa bacterioferritin-associated ferredoxin BFD which binds an [2Fe-2S] cluster and appears to interact with bacterioferritin (E. coli BFR/YheA and P. aeruginosa BfrB), a dynamic regulator of intracellular iron levels. It has been suggested that BFD and bacterioferritin form an electron transfer complex which may participate in the iron storage or iron immobilization functions of bacterioferritin. For Pseudomonas aeruginosa, it has been shown that mobilization of Fe3+ stored in BfrB requires interaction with BFD, which transfers electrons to reduce Fe3+ in the internal cavity of BfrB for subsequent release of Fe2+. The stability of BFD may be aided by an anion-binding site found within this domain. In addition to BFD, the BFD-like [2Fe-2S]-binding domain is found in a variety of proteins such as the large subunit of NADH-dependent nitrite reductase and the Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.	1.96914e-05
NZ_AP013103.1\|WP_172647127.1\|3100479_3101073_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	3.39202e-18
NZ_AP013103.1\|WP_016847779.1\|3107670_3108846_+\|VWA-domain-containing-protein	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_AP013103.1\|WP_172647131.1\|3112681_3113644_-\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	2.297e-170
NZ_AP013103.1\|WP_016847781.1\|3104565_3105408_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.31021e-47
NZ_AP013103.1\|WP_172647133.1\|3117961_3119194_+\|lytic-murein-transglycosylase	gnl\|CDD\|274067	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	2.03516e-140
NZ_AP013103.1\|WP_016843725.1\|3116181_3116766_+\|TIGR00645-family-protein	gnl\|CDD\|179964	PRK05208, PRK05208, hypothetical protein; Provisional.	2.88581e-95
NZ_AP013103.1\|WP_172647128.1\|3101101_3102745_+\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_AP013103.1\|WP_016843729.1\|3119810_3120116_-\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0.00265499
NZ_AP013103.1\|WP_018273366.1\|3099472_3100399_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	2.11245e-62
NZ_AP013103.1\|WP_172647129.1\|3102972_3104475_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.63884e-119

>NZ_AP013103.1|WP_075969456.1|3110290_3110563_-|hypothetical-protein
MAAPEPAPPPSPEAVAAATKIATLGGPEVVVEAPATPKAIKAKKPERSAVSKPAHRKERRRIVRAQPVRQVVQQQLDPFGQPTLVPLTRR
>NZ_AP013103.1|WP_172647130.1|3109414_3110272_+|3-mercaptopyruvate-sulfurtransferase
MTTTDDPLVSTEWLAAHLGDANVKVLDATFKLPGVLPLPKDDYLAAHLPGAVFFDVDAVSDHSNPLPHMFPSAEQFGRDIGGLGISNADTVVIYDSGGWVAAPRAWWMFLSYGHRNVRILNGGLKKWRAEGRAVESGEVKPKPATFKASHDPQRVRSIEQMIANVESRAEQVIDARAADRFEGRAPEPRPGIRAGHIPGARNVPYNQLFDAATGEMKPLDDLRKSFTGAGVKLDAPIVTSCGSGVSAGVLTLALYRLGITESALYDGSWSEWGQASGPPIATGPA
>NZ_AP013103.1|WP_016847778.1|3108901_3109315_+|rhodanese-like-domain-containing-protein
MPQNIHRGIKVMIDEANAEIETISAADAITLIGKNDVVIVDIRDPREIERDGKIPGAFSCTRGMLEFWIDPNSPYAKPIFQEDKKFIFHCAGGLRSALAAKTAKDMGLKPVAHMGGGFAAWREAGGPIEAWEPKKKG
>NZ_AP013103.1|WP_016847779.1|3107670_3108846_+|VWA-domain-containing-protein
MFLQFFTSLRDAQVPVTLREYLTLMEALDADLAEQTVENFYYLSRAALVKDERNLDKFDRVFGTVFKGLESLLDAMGKAEIPEEWLKKLAEKYLTEEEKKQIEAMGWDKLMETLKKRLEEQKGRHQGGSKWIGTAGTSPFGAHGYNPEGVRIGQEKNRNNRAVKVWDKREFKDLDGNVELGIRNIKVALRRLRKFARTGAPDELDLDTTIKETANHGYLDVHMRPERRNAVKVLVFFDIGGSMDSHIEQVEELFSAAKSEFKHMEYFYFHNCLYEGVWKQNKRRFTDRTPTWDVLHKYPHDYKVVFVGDASMSPYEIMVPGGSVEHVNEEAGSVWLDRIIRTYPHAVWLNPVAQKHWDYSESTTIIRRLFSERMYPITIEGLENAMRELVR
>NZ_AP013103.1|WP_100213823.1|3105591_3107418_-|diguanylate-cyclase
MSIFVLGLLIWKAVEARTTALAQGERDIRNLTHSLAEHASHSVQAIDVAMNAMVDLLKYQKPRVDRFNAALRKTADALPQIKEIGVIDPDGNRIYSSAAELPAHNNADRGYFIGHRDSTDASLHISEPLQSRLTGQPTIVLSRRVTREDGSFGGVLFATIETSYFDNFYQAFKFGPHAGITLLRLDGIVLAHWPAGKWNKEVSAAFKAKIEQDRTGYTKTTSPFDGRVKYLGFERASQYPIVVTVALPEAQVLAAWHDDLRNDLLVAIILMGSVILFAILLGKEFAKRTKVARMLREREARYRLLADNIADVVILLDRNGRFLFVSQSVETILGRNPDDLIGKSCFEFVHSDHLADVARATSELTNWTTTKTVEFKTFRADGSEVWVEINFKLAGAAEDHHAIEVVGVLRDVTERRKMEDELNALNIRLSELATTDGLTTLANRRSFDSALPREFRDREQISLIMLDIDHFKGFNDTQGHQAGDECLRRVARVIADATTNTTALAARYGGEEFAIILPGVGEQDALKVAEAMRLTVRSLAIANPAARRGVVSISLGIASRSAATASETELLGRADLALYEAKRSGRDRTVLASSLAGDNHSAGRKQYA
>NZ_AP013103.1|WP_016847781.1|3104565_3105408_-|MoxR-family-ATPase
MKFTGTKDYVATDDLKVAVNAAIVLERPLLVKGEPGTGKTVLAEEVAKAIDAPLLTWHIKSTTKAQQGLYEYDAVSRLRDSQLGDARVSDIKNYIKRGKLWEAFTNEKRPVLLIDEIDKADIEFPNDLLLELDRMEFHVYETGETIKAKLRPIVMITSNNEKELPDAFLRRCFFHYIKFPDNETMGKIVDVHFPGIKKRLVEEALRIFFEVREVPGLKKKPSTSELLDWLKLLLNEDITPEMLRERDPRKLIPPLHGALLKNEQDVHLFERLAFLSRREV
>NZ_AP013103.1|WP_172647129.1|3102972_3104475_-|NAD(P)/FAD-dependent-oxidoreductase
MNVQTQIRAAEPVTTEHFDVLIAGAGISGVGAAYHLTTQCPGTSFVVLETQKTFGGTWSTHRYPGIRSDSDLHTFGYRFKPWTSAPIATAAEILKYMGEVIEENDIARHIRYRHTITAAKWSNETNLWTIDATRIDTGERLRFTTNFFWMCQGYYRHDAGYTPEWTDMAKFKGAVVHPQTWPDDLDYKGKRVVVIGSGATAATLIPAMAKDAGHVTMLQRSPTYFRTGRNAIEIAEELRRLQVDEHWIHEITRRKILFEQDAFTRRTFAEPEGAKKDLLAAVEAVLGKDCDIATHFTPSYRPWRQRIAFVPDADLFHAIKGGKASVVTDEIDRFTETGILLKSGKQLEADIIITATGFHLSANGGIDFEIDGKPLDFADTVTYRGMMFTGVPNLVWVFGYFRASWTLRVDLVGDFVCRLLQHMKATGAKKVTPELRPEDHNMPLLPWIDPENFNPGYMMRGMHLLPKRGDKPEWQHNQDYWAEKDEFPAIDLKDKAFVYG
>NZ_AP013103.1|WP_172647128.1|3101101_3102745_+|GMC-family-oxidoreductase-N-terminal-domain-containing-protein
METFDYVIIGAGSAGSVLTNRLSEDAGTRVCVLEAGPSDWHPYIHLPAGFIKTFHMKSVNWAYQQEVGPYTGGRSIYAPRGKTLGGSSSINGHIYNRGQRQDFDTWAQLGNRGWGYPDVLPYFRRMERRIGEGDDTYRGRDGSLTVTTMDWQDPLCEAFMAGAVSLGIPRNPDYNGQIQEGVSYCQRTILNGRRVSAATAFLHPARRRPNVDVRTHAHVTGIIFEGKRAVGVRYNRGGKHGDPLEIRATKEVILSGGAYNSPQLLQLSGVGAPELLQAHGIEVRHALPGVGEGLQDHYAPRSVARVKNIRTINELRRGFSLWGEAIKWATTRRGLLSLSPTMVYCFWHSGETTESSDLQLTFTPASYKEGVQGQLEDEPGMTVASWQQRPESRGYVRIRSADPFAPPIIQTNYLAEEIDRRVVVAGMKLARRLLASEPLSPYYAYEDFPGPKVTSDDELLAAATQRGTTTFHPGCTCRMGPADAPWAVVDDQLRVHGMEGLRVIDASIMPRMISANLNASTLMIADKASDMIRGKAPEAAAKLPEYA
>NZ_AP013103.1|WP_172647127.1|3100479_3101073_+|GNAT-family-N-acetyltransferase
MPWLEPVPLRGAHARLEPLSHDHCGGLVDAVKDGELSKLWYTAIPQPENMAKEIDRRLGLQKAGSMLPFTVFDAEGRISGMTTYMNVDAPNRRVEIGSTWYAKRVQRSAVNTQCKLLLLTHAFEKFDCIAVEFRTHFFNHQSRRGIERLGAKQDGILRSHQIAPNGTLRDTVVYSIIAGEWPTVKAHLTYQLNEKPR
>NZ_AP013103.1|WP_018273366.1|3099472_3100399_+|SMP-30/gluconolactonase/LRE-family-protein
MANIRVLATDLEFPEGPVVMPDGSVVLVEIRGQRLTRVYPDGRKEIVAKVPGGPNGAALGPDGKMYICNNGGFSWIPTRNMIMPGPQPEDYLGGSIQRVDLQSGKVETVVTKCGEHELRGPNDLVFDRQGGLWFSDLGKRRARDMDVGAFYYLKPGMNEIVEAVHGILPANGIGLSPDEKTVYIAETPTARLWAYEVSEPGTVKPRDVIYRGERGKPIAGLGGYQMFDSLAVEANGNVCVATLVSGCISVIAPDGTVVEQVPTGDRVTTNIAFGGPDLKTAYITLSGKGELIAMDWPRPGLPLNFLNK
>NZ_AP013103.1|WP_172647131.1|3112681_3113644_-|D-2-hydroxyacid-dehydrogenase-family-protein
MTRLRCAILDDYFDIALSVADWPKVKDRVDVTVFDKPFASEAEAATKLKDFEVICAMRERTPFPKSLLDALPRLQLLITSGMRNAAIDMEAAKSRKVVLCGTQYGRDPTAPLTIGLILELTRGIGRENARMHAGEAWQTFAGTEIEGKTLGIIGLGKLGSKVAGMAKVFGMNVIAWSPNLTPEKCKEAGVGYASKDELFATSDIITIHVVLSPRSRGLVGAADLARMKPSAYLVNTARGPIVDEDALFASLRDKTIAGAGIDVFSVEPLPSDHPLRKLDNVVITPHLGYATRESLQAHYQQMVECIDAFTKGNEPPRRLA
>NZ_AP013103.1|WP_016843723.1|3113762_3114008_-|hypothetical-protein
MATIISAPLPRPTTKGEATLFAEFRAFWRAFVAKAFNPYRPELHYMRGPGPACRAKQMALSPAVRSMLADIRSAKKPSPRV
>NZ_AP013103.1|WP_018273360.1|3114281_3115931_+|energy-dependent-translational-throttle-protein-EttA
MARQFIYFMQGLTKAYPTRKVLDNIHLSFYPDAKIGVLGVNGSGKSTLLKIMAGLDKEYNGEAWVAEGARVGYLEQEPHLDPKLSVRENVMQGVAKQKAILDRYNELAVNYSDETADEMTKLQDEIEAQGLWDLDSKVDQAMDALRCPPDDADVTKLSGGERRRVALCRLLLDQPELLLLDEPTNHLDAESVSWLEGHLRNYPGAILIVTHDRYFLDNVTGWILELDRGRGIPYEGNYSSWLVQKQKRLEQEGREDAAHQKTLAREQEWVASSPKARQAKSKARYQRYEDLLKKASEKQTQTAQIIIPVAERLGANVVDFEGLSKGFGDRLLIDDLTFKLPPGGIVGVIGANGAGKTTLFKMITEQETPDKGTITVGETVHLGYVDQSRDALEGNKTVWEEISGGNELILLGKKEVNSRGYCSAFNFKGADQQKKVGALSGGERNRVHLAKMLKSGANVLLLDEPTNDLDVDTLRALEEALEDFAGCAVIISHDRWFLDRIATHILAFEGDSHVEWFEGNFQDYEKDKMRRLGQDSIIPHRVKYKKLTR
>NZ_AP013103.1|WP_016843725.1|3116181_3116766_+|TIGR00645-family-protein
MSALSEARAPAKGRSLRPVPMLIFGSRWLQLPLYVGLIIAQGVYVVLFLKELWHLFAHAFDFSEQQIMLAVLGLIDVVMISNLLVMVIVGGYETFVSRLNLQGHPDEPEWLSHVNASVLKIKLAMAIIGISSIHLLRTFIEAGALSSGKGNYTETGVMWQTIIHCVFILSAIGIAIVDKLSNDSIEGAKQQVGH
>NZ_AP013103.1|WP_172647132.1|3116786_3117878_-|toll/interleukin-1-receptor-domain-containing-protein
MRIFLSFPSELESQADSIAQSLRNCDHDVFFSHDDLPPGDSFDARVEKAIESSDFMVFLISPESVTRGRYTLSELAFARNKWPNPSNRVLPVMMAPTPLDQVPTYLKAVTILEPQGSAAAETRAAVDRMLEAKSEQSRDRSILPFAVLSLASAVLCSLVATYALNVLQYSFVVSDAGGITILPGVIFGIAIAACNVMFGARDRFQLALVVAITGAAWIAAYDASAVTLQALGQYARTVPIEGNAANPAQITETLGNNPYMGFLIGGIGGAVGGAITILGVLLTNPAFRRIDSVVVTWIAAIAAGTVYGAIVRLPTLLGWLVLFGVWQTAFVLAMARGFPRGAAQIPEWLGRSAPALFGSRAAR
>NZ_AP013103.1|WP_172647133.1|3117961_3119194_+|lytic-murein-transglycosylase
MKWPATIVAFAVLLCAPLQRPAFAADAAFTQFIASLWPEAKAAGVSRETFDRETRSLEPDYKLPDLILPGRPKTGAPAQAEFVQVPADYIREASIARLAAEGQRLMQKYRPSLDAIEKRFGVPATVVLAIWGRETDYGRYSLPYDTLRVVATQAYVGRRKDQYRTEFILALKILGEGAVTRKEMRSSWAGATGYTQFLPSEYYKHGVDLDGDGRVDIWHSVPDALASAAQQLVNKGWQPGVRWAYEVQAPANADCTMGVPEVTKPISQWLRAGFVPVRGQKLSAAEQAQSASLLQPEGSYGPAFLTTPNYFVIKEYNFSDLYVLFVGHLADRMTSPQPFATPWSASKQLRSADVEAMQQQLTKIGLYKDKLDGKAGMQTRAALGAYQKQAGLKVDCWPSEAVLRAMNGQR
>NZ_AP013103.1|WP_016843728.1|3119289_3119574_-|hypothetical-protein
MKKTLAALVAVTTIAGSLAVAPAAKAGDGGAVAAGVAGGLIGGALLGGAIAGARPAPVYVAPAPVYVEEAPCRMVRERFWDGYGWRFRRIQVCD
>NZ_AP013103.1|WP_016843729.1|3119810_3120116_-|hypothetical-protein
MKKTLLALCAVAAVAASTVAVPAPAQAQRGVAAGVAAGLIGGAIVGGAIASQNRYYGPGYGYYAPGPAYVAEPGYGPDCFWQRQRFWDGYTWRVRSVRVCD
>NZ_AP013103.1|WP_016843730.1|3120495_3120768_+|(2Fe-2S)-binding-protein
MIVCSCNVLSDHDVRNAVNGGGSVTRNAKQVYGCLGCSAECGRCARTIKAIIDEALGPCAKACCSGCPHSGHPHAANEDAEPAEFALAAC
>NZ_AP013103.1|WP_026193251.1|3120900_3121389_+|bacterioferritin
MQGDPKVIDYLNKGLRSELTAINQYWLHYRMLNNWGLLEMAKVWRKESIEEMEHADKFVDRILFLDGFPNLQVLDPLKIGQDVKEIIECDLAAEIGARTLYQEAATYCHGVKDYVSRDLFEQLMKDEEDHIDFLETQLDLIKRIGLELYTQKHVGHLKGEDS

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Crispr_ID: NZ_AP013103_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013103_2

5082493-5082612

Orphan

Consensus_repeat	Method
ATCTCGGGATTCCGGGTTCGATGCTGCGCATCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP013103_2

>merge|NZ_AP013103|2|5082493-5082612|CRISPRCasFinder
ATCTCGGGATTCCGGGTTCGATGCTGCGCATCGCCCTCAGGTGCGCAATTGCGCACCTGGGAATGACAGTCACGGCGGCGGCGGATCTCGGGATTCCGGGTTCGATGCTGCGCATCGCCC

>NZ_AP013103|2|2|5082493-5082612|CRISPRCasFinder
ATCTCGGGATTCCGGGTTCGATGCTGCGCATCGCCC	TCAGGTGCGCAATTGCGCACCTGGGAATGACAGTCACGGCGGCGGCGG
ATCTCGGGATTCCGGGTTCGATGCTGCGCATCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013103.1\|WP_018271980.1\|5090193_5090967_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235816
NZ_AP013103.1\|WP_018271988.1\|5080721_5080889_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NZ_AP013103.1\|WP_041482874.1\|5074664_5075813_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_AP013103.1\|WP_018271983.1\|5086206_5088978_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NZ_AP013103.1\|WP_016843954.1\|5091221_5091380_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_018271987.1\|5081017_5082343_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_AP013103.1\|WP_018271985.1\|5083417_5083855_-\|DUF983-domain-containing-protein	unknown	unknown	gnl\|CDD\|180334
NZ_AP013103.1\|WP_018271989.1\|5080081_5080612_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_016845975.1\|5079887_5080085_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_016848393.1\|5082631_5083381_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239518
NZ_AP013103.1\|WP_018271992.1\|5076754_5077987_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
NZ_AP013103.1\|WP_100213858.1\|5078490_5079885_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_AP013103.1\|WP_157183463.1\|5089198_5089549_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_018271984.1\|5083845_5086206_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_AP013103.1\|WP_016845968.1\|5072828_5073194_+\|response-regulator	unknown	unknown	gnl\|CDD\|381100
NZ_AP013103.1\|WP_026192855.1\|5076018_5076621_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP013103.1\|WP_018271981.1\|5089610_5090084_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_AP013103.1\|WP_018271979.1\|5091437_5092046_-\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_AP013103.1\|WP_018271978.1\|5092145_5092556_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_AP013103.1\|WP_016845969.1\|5073209_5074583_+\|PleD-family-two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|236577

Protein	Function_ID	Function_description	E-value
NZ_AP013103.1\|WP_018271980.1\|5090193_5090967_+\|glucose-1-dehydrogenase	gnl\|CDD\|235816	PRK06500, PRK06500, SDR family oxidoreductase.	4.19128e-86
NZ_AP013103.1\|WP_018271988.1\|5080721_5080889_-\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	1.29508e-17
NZ_AP013103.1\|WP_041482874.1\|5074664_5075813_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	7.24382e-56
NZ_AP013103.1\|WP_018271983.1\|5086206_5088978_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_AP013103.1\|WP_018271987.1\|5081017_5082343_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_AP013103.1\|WP_018271985.1\|5083417_5083855_-\|DUF983-domain-containing-protein	gnl\|CDD\|180334	PRK05978, PRK05978, hypothetical protein; Provisional.	1.51967e-91
NZ_AP013103.1\|WP_018271978.1\|5092145_5092556_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	5.36075e-43
NZ_AP013103.1\|WP_016848393.1\|5082631_5083381_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	0.00463116
NZ_AP013103.1\|WP_018271992.1\|5076754_5077987_+\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.97053e-81
NZ_AP013103.1\|WP_100213858.1\|5078490_5079885_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	3.96139e-159
NZ_AP013103.1\|WP_018271984.1\|5083845_5086206_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_AP013103.1\|WP_016845968.1\|5072828_5073194_+\|response-regulator	gnl\|CDD\|381100	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins. Caulobacter crescentus DivK is an essential response regulator that is involved in the complex phosphorelay pathways controlling both cell division and motility. It localizes cell cycle regulators to specific poles of the cell during division. DivK contains a stand-alone REC domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.08778e-65
NZ_AP013103.1\|WP_026192855.1\|5076018_5076621_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.08327e-14
NZ_AP013103.1\|WP_018271981.1\|5089610_5090084_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	2.39978e-30
NZ_AP013103.1\|WP_018271979.1\|5091437_5092046_-\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	6.95891e-73
NZ_AP013103.1\|WP_016845969.1\|5073209_5074583_+\|PleD-family-two-component-system-response-regulator	gnl\|CDD\|236577	PRK09581, pleD, response regulator PleD; Reviewed.	0

>NZ_AP013103.1|WP_018271987.1|5081017_5082343_-|LLM-class-flavin-dependent-oxidoreductase
MAKRQLKLGAFMRPISIHTGAWRYPGAWPDANFNFDHIKTLIRKLEAGKFDAFFMADHLAVLNMPINALKRSHTVTSFEPFTLLSALSAVTENIGLIATGSTTFDEPYHVARRFASLDHISGGRAGWNIVTTSNPDAALNFGLDDHMEHAERYKRAREFYDVVTGLWDSFADDAFVRDVESGLFVDPDKMHVLNHKGKYLSVRGPLNIARPVQGWPVIVQAGASDDGRQLAAETAEAVFTGGGNLADGQKLYADIKGRMEKIGRDPEHLKILPGAFVVVGDSVEEAKEKRALLDSRVHYDSAIASLSVILGTDASGFDPDGQLPPIPETNASKSGRQRLVDVAARDKLTVRQLAQRVGGYGGLAFVGTPQTIADQMEEWLTGRGSDGFNIMFPYLPQGLFDFVDKVVPELQRRGIFRTEYEGRTLRENLGLPRPKNQFFEG
>NZ_AP013103.1|WP_018271988.1|5080721_5080889_-|50S-ribosomal-protein-L33
MAKAVTIKVKLVSTADTGFYYVAKKNSRTMTDKLVKKKYDPVARKHVEFKEAKIK
>NZ_AP013103.1|WP_018271989.1|5080081_5080612_-|hypothetical-protein
MIASLDEGNVGGYSVAYGREDIYFPVYVTAALAAVFLTASWITGAIYWLAPAAAAAGFTYYNIPLLEAGRPTIGANQYGIFIQAFGLIRWRAIARIDLVEIAERAMTVHELQIALDGPLGSALVADWRKRPAYRLLMRLPWRMDHRGVVRVNLEPFDRAPDEIHRTFLRMWRYYRS
>NZ_AP013103.1|WP_016845975.1|5079887_5080085_+|hypothetical-protein
MAAFRKAGDVRRPARDKAVRGDPMNWFYWNTAWSLFFSLVWFMTITHNPDAQIADAHLRDEAFKG
>NZ_AP013103.1|WP_100213858.1|5078490_5079885_+|ammonium-transporter
MESATYTRQKLVRIVVALLGVAFLCLLFSDPALAEDAAAPPACGGKILEKCTPNSGDTAWMLTSVALVLMMTVPGLGLFYGGMVRKKNVGDTVMTSFAVTCLVTILFAVLTYSLAFRAGTPFIGGLDRLFLKDILSDIGKGGIGNPNPLAATIPEAVYICFQMTFAIITPALIAGAFAERMKFSAMLWFIGLWAIFVYAPIAHWVWGPDGIFSAGNDAAYVKVLDFAGGTVVHINAGVAGLMCAIMLGKRVETGPAHNMVLTFIGASLLWVGWFGFNAGSAVTAGMQAGMAMLVTQIATAVAGFTWMLVEWALKGKPTVVGICSGAVAGLVAITPASGFVGPVGAFAIGIAAGVCCYWGCTGLKRLFSYDDALDCFGVHALGGIVGALLTGVFAVEQYGGTAGVLEGNAGQFVNQCIGVATVFVYDAVVSLIILFVINLFVGLRVTQDIEREGLDLALHGEVVQ
>NZ_AP013103.1|WP_018271992.1|5076754_5077987_+|MFS-transporter
MPLLQVLRPTLPILIGASIMLTLSMGLRQSLGIFMQPLTHDIGISISHFTLALAVQNLAWGFLQPVAGAMTVRYGFRPIMVVGALAYIAGLVLMTTAHGLVAIMIGAGVLIGLSLACTANAIAMSVSARAVPETVRSTVLGMVSAAGSLGALLSAPIGQMLNEGFGWRVGLAGFVILSIFMIPAALYAGRVDKIPLPKPAADDIGNATAATAAKTAFGNAAFVVMTCAYMVCGMQLVFLTTHLPSYLAICGLDPMLSAQTLGMIGGFNVLGSLFFGWAGQRWNKLALLGAIYILRSLALAWYFMLPATPGSTLLFGAIMGFLWMGVGPLVAGAVAEMFGLRWQAMIQGLAFMSHQVGSFLGAYGGGLIYDSLGSYTMAWRIGVALGLAGGIIQVAFALIRPAQPPLLKTA
>NZ_AP013103.1|WP_026192855.1|5076018_5076621_-|TetR/AcrR-family-transcriptional-regulator
MASPPPKQTMKERILETADRLFYLQGIRAIGVDTIAAEIGISKRTLYNHFPSKDALIEAYLQRRFVQPRPSDKPPAEQILATFDSLERRFSAKDFRGCPFVNAVAELGPEDEDRTVRNIAIAFKESRRLWFRNLLRQLGVADAEGLATQLTLLVDGSIAQDLVRDDPAMARAAREAARVLLANAGIKVGSPAPAGKKRAG
>NZ_AP013103.1|WP_041482874.1|5074664_5075813_-|serine-hydrolase
MQRYIDNDLLSGISWTVLVGRDIADTGCVGWADKEAQIPLRTDHIFRVFSNTKLITSCAALLLVEEGRFRLDDPIETFIPQLRNRKVLRPGATSIDDTEPAQRSITVRHLLSHSAGLSYGLFDPGTPIFKAYNERKILNPMTTLADMVDGLSDLPLVFHPGSSWEYSVAIDVVARLVEVVSSQPFDKFVKARILEPLGMVDTGFHVPEKDHNRLVAYYAGADLMDPMKPGLTRTDNAPYPGAYLRPVPRFNGGGGLVSTLHDMVALIRSLLPGGPTLLKPETIAQAMTNQLTPGQWIRFAMMGEQPGKTYGLTGGLILNPSSIDHPDAAGELYWGGVAGTQWWISPKTGIAGVMMAQRQMAFVHPFSFEFKRMAYDAVKRGR
>NZ_AP013103.1|WP_016845969.1|5073209_5074583_+|PleD-family-two-component-system-response-regulator
MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGTEALEICARAECDIILLDVMMPDMDGFEVCRRLKSNPATHFIPVVIVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLTRLKMMTDELRMRAITSLEIGMQAPERSAIADKGTGGRILLVDDRPSSYEKLAPILSAEHTVDVEINPSEALFHAAEGNYDLLIVSLSLDNYDGLRLCSQARSLERTRQVPILAISDADNNTRLMRGLEIGVNDYLLRPVDKNELLARARTQIRRRRYTDHLRDNVQNSIEMAITDALTGLNNRRYMESHLATLAEQASIRGKPLALMILDIDYFKAINDTYGHDAGDDVLREFAVRIRKSIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFSVDKGGKRITVTISIGLTTLERKGEQVTDVLKRADTALYRAKHDGRNRVVSAAA
>NZ_AP013103.1|WP_016845968.1|5072828_5073194_+|response-regulator
MAKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSNGFEALDLVRKLRPDLILMDIQLPQVSGLEVTRWIKDDPDLRTIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFIG
>NZ_AP013103.1|WP_016848393.1|5082631_5083381_-|NUDIX-domain-containing-protein
MTEAAAPAAVVHQGEKEADHHAYFRPKDAATLILIDRSGAKPKVLVGKRHDKVVFMPGKFVFPGGRVDKADNRVPVAAPITPELEANLLKGSPKITTGRARALANAAIREACEETGLCLGRKVEKSHKLEGPWAPFADAGLLPDPSGLFLIARAITPPGRVRRFDTRFFTADASTIAHRVEGVVHADAELVELVWVEIGSEPLADAHAMTKNVLAELDRRLATGPLRHDAPVPFFHFYGGKMQKDVLGA
>NZ_AP013103.1|WP_018271985.1|5083417_5083855_-|DUF983-domain-containing-protein
MEVTPPTVVWTREAAEPEKRDVWSAMKRGFRCRCPRCGKGRLFRKFLKCDGHCPVCDLDFTPHRADDLPAYLVIVIVGHIVVPMALWIETNYSPPVWLQLAIYLPFTLFASLALLQPVKGAVIGLQWALRMHGFDENPPSDIPPV
>NZ_AP013103.1|WP_018271984.1|5083845_5086206_-|ribonuclease-R
MKRKPDHGFPGRDAIVAFIRANPGKVGTREIAREFGLKNADRVELKRILRELADDGTIAKRGRKIHEPAALPPTVLADITGRDSDGELIAAPAEWDSDENGTAPKIRIEMPRRPKPGTTAGVGDRALLRVEVTDEQDGTPYRGRVIKVIDHGRTRILGIFRRNPDGGGRLIPVDKKQAGRELNIAKADSGGAEDGDLISVDLIRTRGYGLASARVKERLGSIASEKAISLIAINTHDIPQVFSSSALREAEEAKPATLQGREDWRDVPLVTIDPPDAKDHDDAVHAEVDPDPNNKGGFIVHVAIADVAYYVRPGSALDRDALQRGNSVYFPDRVVPMLPERISNDLCSLVPGEPRGALAVRMVIGADGRKRSHTFHRVLMRSAAKLNYAQAQAAIDGGPDDTTGPILDPVLKPLWSAYELVKLARNERDPLDLDLPERKILLKADGTVDRVIVPQRLDAHRLIEEFMILANVAAAEMLEKKALPLIYRVHDEPSQEKVHNLQEFLKTLDLPFTKQGALRPTQFNRVLAQVAGEDYEPLVNEVVLRSQAQAEYSAENYGHFGLNLRRYAHFTSPIRRYADLIVHRALIRALGLGEGALPTDETVETLAEIAAQISVTERRAMKAERETTDRLIAHFLADKVGASFQGRISGVTRSGLFVKLDDTGADGLIPIRTIGSEYFNYDETRHTLIGTRSGTMYRLGDVVDVRLVEAAPIAGALRFELLSDGQAIPRGRKRDSVRAERRAAGFGKGPKGSGKKAHKERKSRSKKDRKPAQQKSGKSKRGKSWK
>NZ_AP013103.1|WP_018271983.1|5086206_5088978_-|type-I-DNA-topoisomerase
MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDAKAASRLNDIAKALKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQKVERVVFNAITKQAVSEAMKAPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRELEIEKFVPREYWSLVATLLTPRGDAFEARLVGADGKKIARLDIGSGAEAEDFKKAIEAALFKVATVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGLITYMRTDGVQIAPEAITQARKVIGEDYGNAYVPDAPRQYQAKAKNAQEAHEAIRPTDLSRRPATIGRRLDADQARLYELIWKRTIASQMESAELERTTVDIEAKAGSRVLELRASGQVIKFDGFLALYQESRDDEEDEDSRRLPAMSEGEAVKRQSLAVTQHFTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFLENFFSRYVEYDFTADLEEQLDRISNNEIAWQQVLQDFWRGFIGAVNDIKDLRVAEVLDALDEMLGPHIYPPRADGGDVRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAADSAESADRVLGTDPDTGFDVTVKAGRFGPYIQLGEQKDYAEGEKPKRAGIPKGTSPADVDLELALKLLSLPREIGKHPETGQPITAGLGRFGPFVKHEKTYASLEAGDEVFDIGLNRAVTLIAEKIAKGPSGRRFGADPGKPLGDHPTLGAVALKNGRYGAYVAAGGVNATIPSDRTPDQITLAEAIALIDERAAKGGGKKAKKAKAEKPAKAKKAKSQATETDGDAEAKPAKKAASKKAAAKPKTDATSKARAPVASGAKTSPAKSSAPAKAPAKKSAGKARG
>NZ_AP013103.1|WP_157183463.1|5089198_5089549_-|hypothetical-protein
MRDAGAAIPFITECGGYGLGFRQDYAARVWVRPSRQLPPAARTLLLVGLEAGHREQALEDFEFVAPGKFGEFGRGGSDQDQGVVRAALPSCLVARRSSPPAGRLALPAAPCAVQKA
>NZ_AP013103.1|WP_018271981.1|5089610_5090084_-|helix-turn-helix-transcriptional-regulator
MKRTSLAGDSCPVARALDVFGDWWSLLIIRDASLGRRRFGEFQASLGLAKNILATRLRTLVERGILKTVPASDGSAYQEYVLTPKGHGIFPILVALRQWTEEFDEHPDEIATILVDRDKGKPVKKLALYSQDGRVLGAADTALKPRPARKAAKRVSA
>NZ_AP013103.1|WP_018271980.1|5090193_5090967_+|glucose-1-dehydrogenase
MRLANKTALITGGNSGIGLATAKLFVAEGAKVVITGRNKETLAAAARELGPNALAVAADATDVAALEAAVKQGAEKFGKYDVLFANAGIPGQTPVGGTTLAAFENVIRTNLTGVFFTVQAVAPYLNDGASIILNGSVISVLGNPGYSAYAASKAGVRAMARVMASELSPRNIRVNVVAPGAVRTPIWGAAIATPEAEKIFEQRIGKTTPLGRIGEPDHISKTVLFLASDDAAHVQGQELFIDGGATASPAGAPIYRG
>NZ_AP013103.1|WP_016843954.1|5091221_5091380_+|hypothetical-protein
MPKAARISTSIPVSSASESSDTTQFVTVALFSGIGLLISLVAVILGIQGVWF
>NZ_AP013103.1|WP_018271979.1|5091437_5092046_-|FMN-dependent-NADH-azoreductase
MKLLHIDSSVLGPHSVSRQVSAAAVERLRQANPGLVVSYRDLSQTPLAHLSGLHLAASQGAAPDPSVRDDIATGQAVLDEFLAADIVVIGAPMYNFTIPSQLKAWIDRILVAGKTFKYGAGGVEGLAGNKRVIIAISRGGYYGADTPMAALEHLETYLRGVFGFIGVRNVEFIPADGIQVGPEHREKAVAGALQAAGSLNAA
>NZ_AP013103.1|WP_018271978.1|5092145_5092556_+|helix-turn-helix-transcriptional-regulator
MEPEHIDVTAETGLPRGPGTHQDCRGVASVLSRVGDKWSVLVIMLLRDGPRRFNELKRTINGISQRMLTLTLRGLERDGLVTRTVFPTIPPRVDYELTDLGRGLAVPVMALGEWAFAHLPEIEGARNDFDARNAEG

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Crispr_ID: NZ_AP013103_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013103_3

7983943-7984091

Orphan

Consensus_repeat	Method
CAGCTGACCAGCCTGCCCGATCTTCCAGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_AP013103_3

>merge|NZ_AP013103|3|7983943-7984091|CRISPRCasFinder
CAGCTGACCGATCTGCCCGCCCTTCCGGCAACGATCGAGGAGTTGTCTGCCAGCAATAACCAGCTGACCAGCCTGCCCGATCTTCCAGCCAGGCTCCGCCGCCTGGACGTCAGCGAAAATCAGCTGACCAGTCTGCCCGATCTTCCAGC

>NZ_AP013103|3|3|7983943-7984091|CRISPRCasFinder
CAGCTGACCGATCTGCCCGCCCTTCCGGC	AACGATCGAGGAGTTGTCTGCCAGCAATAAC
CAGCTGACCAGCCTGCCCGATCTTCCAGC	CAGGCTCCGCCGCCTGGACGTCAGCGAAAAT
CAGCTGACCAGTCTGCCCGATCTTCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013103.1\|WP_016842022.1\|7971059_7972412_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|237902
NZ_AP013103.1\|WP_011084703.1\|7984230_7985742_+\|ISNCY-like-element-ISBj12-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_AP013103.1\|WP_016842047.1\|7998464_7999256_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130358
NZ_AP013103.1\|WP_157183431.1\|7990566_7990764_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_AP013103.1\|WP_085964789.1\|7989923_7990319_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_AP013103.1\|WP_125459275.1\|7994674_7994881_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_080586187.1\|7981769_7982615_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|136670
NZ_AP013103.1\|WP_026192376.1\|7996160_7998188_-\|carbamoyltransferase	unknown	unknown	gnl\|CDD\|225103
NZ_AP013103.1\|WP_026192379.1\|7991214_7993038_-\|nif-specific-transcriptional-activator-NifA	unknown	unknown	gnl\|CDD\|273817
NZ_AP013103.1\|WP_016842032.1\|7979342_7979504_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_077231073.1\|7994877_7995990_-\|nodulation-protein-NodZ	unknown	unknown	gnl\|CDD\|283486
NZ_AP013103.1\|WP_075968511.1\|7977492_7977771_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|274227
NZ_AP013103.1\|WP_172648459.1\|7985971_7987051_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|339245
NZ_AP013103.1\|WP_026192378.1\|7993223_7994060_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_AP013103.1\|WP_018270211.1\|7968793_7969984_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_AP013103.1\|WP_129964890.1\|7978946_7979192_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_016842027.1\|7977326_7977503_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_AP013103.1\|WP_026192380.1\|7975734_7976577_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_AP013103.1\|WP_016842030.1\|7978175_7978415_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_050994118.1\|7974139_7975489_+\|DUF3422-domain-containing-protein	unknown	unknown	gnl\|CDD\|378758

Protein	Function_ID	Function_description	E-value
NZ_AP013103.1\|WP_016842022.1\|7971059_7972412_+\|MFS-transporter	gnl\|CDD\|237902	PRK15075, PRK15075, tricarballylate/proton symporter TcuC.	0
NZ_AP013103.1\|WP_011084703.1\|7984230_7985742_+\|ISNCY-like-element-ISBj12-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.40087e-06
NZ_AP013103.1\|WP_016842047.1\|7998464_7999256_-\|ABC-transporter-permease	gnl\|CDD\|130358	TIGR01291, Nodulation_protein_J, ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. [Cellular processes, Other, Transport and binding proteins, Other].	9.28236e-109
NZ_AP013103.1\|WP_157183431.1\|7990566_7990764_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.16119e-07
NZ_AP013103.1\|WP_085964789.1\|7989923_7990319_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.08232e-12
NZ_AP013103.1\|WP_080586187.1\|7981769_7982615_+\|ATP-binding-protein	gnl\|CDD\|136670	PRK08181, PRK08181, transposase; Validated.	0
NZ_AP013103.1\|WP_026192376.1\|7996160_7998188_-\|carbamoyltransferase	gnl\|CDD\|225103	COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones].	0
NZ_AP013103.1\|WP_026192379.1\|7991214_7993038_-\|nif-specific-transcriptional-activator-NifA	gnl\|CDD\|273817	TIGR01817, Nif-specific_regulatory_protein, Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions].	0
NZ_AP013103.1\|WP_077231073.1\|7994877_7995990_-\|nodulation-protein-NodZ	gnl\|CDD\|283486	pfam05830, NodZ, Nodulation protein Z (NodZ). The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal.	0
NZ_AP013103.1\|WP_075968511.1\|7977492_7977771_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	9.92277e-17
NZ_AP013103.1\|WP_172648459.1\|7985971_7987051_+\|hypothetical-protein	gnl\|CDD\|339245	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting. This NEL or novel E3 ligase domain is found at the C-terminus of bacterial virulence factors. Its sequence is different from those of the eukaryotic HECT and RING-finger E3 ligases, and it subverts the host ubiquitination process. At the N-terminus of the family-members there is a series of LRR repeats, and the NEL domain interacts with the most N-terminal repeat. The key residue for the ligation step is the cysteine, eg found at position 386 in UniProtKB:E7K2H2. The LRR section sequesters this active site until invasion has occurred.	3.18292e-68
NZ_AP013103.1\|WP_018270211.1\|7968793_7969984_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	1.0632e-22
NZ_AP013103.1\|WP_026192378.1\|7993223_7994060_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.44795e-69
NZ_AP013103.1\|WP_016842027.1\|7977326_7977503_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	3.71221e-06
NZ_AP013103.1\|WP_026192380.1\|7975734_7976577_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	5.10759e-92
NZ_AP013103.1\|WP_050994118.1\|7974139_7975489_+\|DUF3422-domain-containing-protein	gnl\|CDD\|378758	pfam11902, DUF3422, Protein of unknown function (DUF3422). This family of proteins are functionally uncharacterized. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.	1.24226e-171

>NZ_AP013103.1|WP_080586187.1|7981769_7982615_+|ATP-binding-protein
MPHRYCRDRRCRMSTTNVVDTARLNLLLNELRLPAIKVLWPQFAEQSDKEGWPAARFLATIAEHEIAERSRRRIERHLVEARLPTGKTFDSFDFEAVPMISKAQMTALAAGDGWLNKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELNLEGAINRLDRFDLVILDDLAYVTKDQAETSVLFELISARYERRSLLITANQPFGEWNKVFPDPAMTLAAIDRLVHHATIVEMNVESYRRRTALERKRGPGRPPEHATQKTLA
>NZ_AP013103.1|WP_016842032.1|7979342_7979504_-|hypothetical-protein
MRATASAVLHFEWDANVEFTEEAIEGAAFGVLVAGLLDSPLPDRLPDWAAARI
>NZ_AP013103.1|WP_129964890.1|7978946_7979192_-|hypothetical-protein
MPFFSSQSLASAAAASVLSILIVGAVAFSAVGYVEWSSGVNLTHFMGRTAADASTPVLLLKGRTGCEQGNRPLPALSLPLE
>NZ_AP013103.1|WP_016842030.1|7978175_7978415_+|hypothetical-protein
MLAPTTTLVGPRFDLAVALARASGDGMAGRSLTINDLCKLLPQVDPKDVEKAAFDLDALGLTSIQRSFGEHWWLRLSPI
>NZ_AP013103.1|WP_075968511.1|7977492_7977771_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MATSYTVGKHYESFIKDLVDSGRYAAASEVMREGLRLVEEREERRKAKLEALRTAIQEGLESGPAEPFEPGELVEQIKARGRERLKAGKHGG
>NZ_AP013103.1|WP_016842027.1|7977326_7977503_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAGNLTRRPQAETDLEEIWLLIASDNTAAADRLLDRIGNAFQMLAKNPRRAASGPSWG
>NZ_AP013103.1|WP_026192380.1|7975734_7976577_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MHIVVCIKQVPDSAQIRVHPVTNTIMRQGVPTIINPYDLFALEAALELRERFGGEITVLTMGPQSAEDSLRKALTFGADRAVLLTDRCFAGSDTLATTYALATAIRKIGKEYGPPDLIFTGKQTIDGDTAQVGPGVAKRLGVLQLTYVAKVKTLDLAARTIEAERRSEGGVQVLHTRLPCLITMLEGTCQIRRGAMADALRAARAPIVKWSAHDAGVEDVSKCGLKGSPTVVKRVFAPSARAEKAALVEAAEQPAQALIDAIFKHQPKLETDLAALARDA
>NZ_AP013103.1|WP_050994118.1|7974139_7975489_+|DUF3422-domain-containing-protein
MRANSDTRCLDVPDKLDLRSFKLHSQRDAVLNEVHARPFMQLIPPFKVTHFAFLSQGDAAASDRRAFVTFCRERDLPAPQLSAKHHQIDIGPVVLRWEQHAEFAIFTWIANGPFARQSGDSQSAVHSLMRNLRQEGQLLVAIKLDVEQHAAPLRRAEQLFDKSSLAMARIKGGASVMASDFRVDENGFTKILVCDLGLTPHNLGALVQRLLEVETYRPLALLGLSAALELGPFVDRIDRRLGEVLEEMQGAEGLKLNNHLLAELTALAASFERGATGSLFRFGASRAYYELVQSRLSIIEGSEITDYPTWSSFLARRMAPAMRTCETTKDREVTLSVKLARAADLLRTRVDVEIEQQNRDLLHAINERTGQQLRLQCTVEGLSVAAIGYYVVSLFGYLAKGAHDVGLHVEPSYLTAACVPVAVGVIWLVSYNARKRHLKHRDGPSVTDR
>NZ_AP013103.1|WP_016842022.1|7971059_7972412_+|MFS-transporter
MSQTLVQQATVKSRINAILRATSGNFLEQFDFFLFGFYASAIGKAFFPSDNETASLLNTFGVFWLGALMRPVGAIVLGAYIDRIGRRQGLIITLSIMAVGTVIIAFCPSYATIGIAAPIIVLAGRLLQGFSAGVEVGGVSVYLAEIATPGNRGFYTSFQSSSQQVAIFVAAIVGYLLNESMPLEAVASWGWRIPFFLGCLIIPLIFFLRRTLEETPEFLAMKKHPTAREVFASALVHWHTVVLGMMMAILTTTTFYFVTVYAPTFGKTVLKLSTQDALLVTLLVAVTNFIWNPIGGTVSDRIGRKPVLLAIAGLALMTAYPALSWLVSAPSFGKLLAVAMMFSFYFGTYSGTMLGALVEIVPAHVRTTCFSLAFAFAAALFGTFTPLASTWLIERTNDKASPGFWLMFAAALGIIAVLTIYRGTPKPSRAEKPSLRKSPESALGVQTASR
>NZ_AP013103.1|WP_018270211.1|7968793_7969984_-|GFA-family-protein
MRPSQASQVQLDRPSQIVCEYLTEQARNLFGLHPFAAEMSKRQVASLLPEYLAMSQAFPYLQAGSQKDLIFDAMRRNRDLPRDVELTSVVANFICWDETGGYGRVLRGGKTALPDILATEDFHSNLLRKDASRLLGRTIQPNYSATTKRYLHSLYAGLSAKDPVVRCAYMVAFELHAAEMIQSLWTTLVKTFDAQSDDLEYFRTHVGGVDPAEKYHGEMTTRLIREVVPADGNRRFLDEFDRAYRLSLQWCRDLLQTVSIEEDGLAEIEHHGGCHCGAVKFYVRAPRELSAVRCNCSICQMSGFLHLLVSGDKLRIECGEEFLNTYQFNKNIARHTFCRICGVKPFYRPRSNPTGFSVNIRCLDKRTIENITIEEFDGEHWEEAFRPTREDWEATS
>NZ_AP013103.1|WP_011084703.1|7984230_7985742_+|ISNCY-like-element-ISBj12-family-transposase
MGWLSMATRKELTAAAGVRYRRSDRAKKARILDEFVDITGFHRKHAMRLLRNQEGVHPGRRARRRIYNEAEHTALVLLWEASDRICGKRLKALMPALIEAMERYGHLDLAPEIRTKLLAMSAATIDRALVRVREKLGRKRRRHAGHSLRRSIPIRTSADWNDPAPGFVEADLVAHSGPSARGSFIQTLVLTDIATGWTECAPLIVREQTLVSTVLTELRKQLPFALLGFDTDNDTVFMNETLKAYCEAANIVFTRCRPYRKNDQAFVEQKNGAVVRRMVGYRRFEGLEAAKLLAELYRSARLFVNFFQPSFKLLAKQRDGARVRKTYSAPATPHQRLSADARTPDAVRHHLQEIYTALDPVTLLRDIRDVQERLAALADIQPSAHPAAASQSIDRFLASLRTAWKDGATRPTDRPIVKAKRGRRRPDPLIRATSDLRKWFEAEPWRTGSELLSRLQVEYPGDYPNKLLRTLQRRLKSWRSEQANALLFASEKMPPGHEVTTPQ
>NZ_AP013103.1|WP_172648459.1|7985971_7987051_+|hypothetical-protein
MLGASNNQLTGLPATVLTQLGSASSIDVRSNPIPGPVLADLASATRGPDYAGPQVLLSMPLQPVEHQPPLLHEVVADWLADEPGAVAAWQGFAEEPGAQDFALFLERLAGTVNYGHQAFRDQVAENLLQAAMRPRLREQYFELASGATASCEDRVTLTWNGMQTARLNADVKDGLYDSQLDQLLQHGRVMFRLEALDDIARETVRSLRRADPDANIDEIEVYLAYQTQLRDRLELRHIAPDMRFLNLSDVTADDVARAETSVREQEAAGFADFLATRWEPWDTVVKRIAPDDHAAMRDRLADAMEDEFPTRLNERLAEPGLTDDVDARRVVGAQILSEIACEIKGELMHKVLREQGLEL
>NZ_AP013103.1|WP_085964789.1|7989923_7990319_+|helix-turn-helix-transcriptional-regulator
MNRSAAKKMQQRSAGKPDIELGKRIRLRRVEQKISQAELGDKLGVSFQQVQKYEKGVNRVGAARLQQIATTLDVPVTFFYGGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSLMESIAADED
>NZ_AP013103.1|WP_157183431.1|7990566_7990764_-|TetR-family-transcriptional-regulator
MAAEVDLRISTAACELFLARELAGVSVEEIACRTSKATVYTRFPTKEALFAAIFHSKPRGFAFRT
>NZ_AP013103.1|WP_026192379.1|7991214_7993038_-|nif-specific-transcriptional-activator-NifA
MQNEARKSEQGAREDDQNNGDRLMLHIASAREIPASHPETERELSGEPLRESALTGIFEISKILTAPCRLEVTLANVVGLLQSFVQMRHGIVSLFDDDGMPDITVGAGWSEGSDDRFRMRLPRKAIDQIVATDRPLVAENVAAEPAFSAADLEVLGASDNMPVSFIGVPIRIDPKVVGTLTLDRVCDERSSLRLDYDARLLTMIANLVGQTVRLHRLFACDRERLMVEKDRLQKQLFEFRQPVRERKKVPVHGIIGDSPALRGLLEKIAVVAKSNSTVLLRGESGTGKELVAKAIHESSSRAKRPFIKLNCAALPETVLESELFGHEKGAFTGAFSSRKGRFELADKGTLFLDEIGEISAPFQAKLLRVLQEQEFERVGSNQTIKVDVRVIAATNKNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAGEFLRNFNSVNGRTLTLEASAIDVLMNCGFPGNVRELENCIERTATLSAGPSIVRNDFACCHGQCLSAMLWKSTSEEATVQTAPVVPVPAKPISLPSEATAPAPLVGSELASLAPPGTVLVSGAKMADRERVIAAMEKSGWVQAKAARLLGLTPRQIGYALRKYGIEIKRF
>NZ_AP013103.1|WP_026192378.1|7993223_7994060_-|SDR-family-oxidoreductase
MGLDLPNDDLIAGPLPETHLGCPFRADEARLHQGEQKAMLLTGASRGIGHATAKLFSEAGWRIISCARQPFDGARCPWDSGREDHVQVDLSDYQMLPRLIAQVKERLAGAPLHALVNNAGISPKTSDGDRLTSLTTSTETWMRVFHLNLVAPILLARGLFDELRAASGSIVNVTSIAGSRVHPFAGSAYATSKAALASLTREMAHDYAPYGVRVNAIAPGEIRTDMLSPDTEARLVPNIPLRRVGTPDEVAKVIFFLCSDAASYVTGAEVPINGGQHL
>NZ_AP013103.1|WP_125459275.1|7994674_7994881_-|hypothetical-protein
MKVVTRLIDLIAAFCIEQHCHYVSGRQLIAQTDVPTDPCPGEQQDAAAECRPLKLDLDKSGVTVPPPR
>NZ_AP013103.1|WP_077231073.1|7994877_7995990_-|nodulation-protein-NodZ
MKFYRRNARAAQAPTITSAKTICEVSPMTSLVQPGVRKEAMQMPGGSKNDQFVVSRRRTGLGDCLWSLAAAWRFAERTGRKLVIDWRGSCYLDQPFTNAFPVFFEPVQDIAGVQVICDDRINQHSFPGPFFPAWWNRPAIDCAYRPDEQIFRERDELDQLFQSGQDSDANTVVCDACLMWRCDEEAEREIFRSIKPRSEVQARIDAIFREHLASFSVIGIHVRHGNGEDVMGHAPYWADPERALQQVCNAIDKAKALPHAKPVRAFLCTDSAHVLERVSAMFPDVFTIPKRFQAAQAGPLHSAALGAEGGFSALIEMYLLARCDTVIRFPPTSAFTRYARLFAPRVIEFDLNDPSRLILIEEASKELVAS
>NZ_AP013103.1|WP_026192376.1|7996160_7998188_-|carbamoyltransferase
MLCLGVSGGLDRIYQNSAELPNTFLHDGAAVLVRDGRVLAAVEEERLNRVKHSNKLPSNSIRYCLSAAGVELGEIDRIAFYATESYCNTMLERLFLSQAVPLDAKLLLRQLLAREFRTEVDASRVFFVNHHEAHAASAFAMSGFEQSLIFTVDGGGDFLSGLLAVGSGTEISQLASFPEHNSLGLFYLEAIRYLGYGLFDEYKVMGLAPYGDPAPYRELFAQFYELLDNGGYRVHLDRIGPALIRSIQVRRKGMAFTQQHRDVSASLQEALERIIFHILRHHREATGMKRLCLAGGVAHNCTMNGKLLYSGLFDDIFVQPAAHDAGCALGAALMMSNELGRPAPRERLSDVYWGPDLGTEQAIEHELNAWSSHLDFQRSDDIAASAADWMANGAVIGWVQGRSEFGPRALGNRSILADPRPAENKNRINAMVKKREGYRPFAPSVLEEDASEFFELPGGKREFPFMNFVVRVRAAHHSVLGAVTHVDGTARLQTVSRNTNPAYWDVINAFKKRTGIPVLLNTSFNNNAEPIVDSVSDAIVTFLTTDLDGLVVKPFLVEKRPATLPDWCTLGVSLPPYASLHRIRSYTAEDRQETVSEIRMGHSGRESMRISHELFDLLMRIEGEASLGWLLDTTMLDQPRREDLVKELRLLWEQRGVRLHPPRAACVRIKALGEA
>NZ_AP013103.1|WP_016842047.1|7998464_7999256_-|ABC-transporter-permease
MGESYAALMPANAYNWIAVWRRNFLAWRKVALASVLGNLADPITNLFGLGFGLGLIVGRVEGTSYISFLAAGMVATSAMTSATFETMYATFARMDAKRTWEAILSTQLTLGDVVLGELVWAASKSVLAGTAIGIVAATLGYASWASILYAMPTVALTGLVFASLAMVVISLAPSYDYFVFYQTLILTPMVFLCGAVFPMSQLPSSFQHIAGLLPLAHSVDLIRPAMLDRAASGGAAFHVGALCMYAVLPFFVSTVLFRRRLLR

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Crispr_ID: NZ_AP013103_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013103_4

8806010-8806218

Orphan

Consensus_repeat	Method
GTCGACTGGTTCTGCGGCGAGTTCGCCTGACC	PILER-CR

2 spacers

The CRISPR arrays of NZ_AP013103_4

>merge|NZ_AP013103|4|8806010-8806218|PILER-CR
GTCGACTGGTTCTGCGGTGCAGCCTGGCCCGTCGTATTCTGCTGCGGAGCCTGCTGCTGAGCGGACGGCTGATTTCCGCTCTGGCCGGTTGTCGACTGGTTCTGCGGCGAGTTCGCCTGACCCGTGGTCTGCCCGGTCGTATTCTGCTGGGCAGGCTGCTGAGCGCCGGTCTGGCCGGTCGACTGGTTCTGCGGCGCGTTGGTCTGACC

>NZ_AP013103|4|1|8806010-8806218|PILER-CR
GTCGACTGGTTCTGCGGTGCAGCCTGGCCCGTCG	TATTCTGCTGCGGAGCCTGCTGCTGAGCGGACGGCTGATTTCCGCTCTGGCCGGTTGTCGACTGGTTCTGCGG
CGAGTTCGCCTGACCCGTGGTCTGCCCGGTCGTA	TTCTGCTGGGCAGGCTGCTGAGCGCCGGTCTGGCCGGTCGACTGGTTCTGCGG
CGCGTTGGTCTGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013103.1\|WP_172648647.1\|8801750_8802596_-\|DUF1989-domain-containing-protein	unknown	unknown	gnl\|CDD\|163257
NZ_AP013103.1\|WP_069275942.1\|8820595_8821375_+\|histidinol-phosphatase	unknown	unknown	gnl\|CDD\|238819
NZ_AP013103.1\|WP_172648652.1\|8810005_8814343_-\|YadA-like-family-protein	unknown	unknown	gnl\|CDD\|380308
NZ_AP013103.1\|WP_172648644.1\|8792883_8794176_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NZ_AP013103.1\|WP_137476924.1\|8803422_8804241_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_AP013103.1\|WP_172648646.1\|8801115_8801754_-\|urea-carboxylase-associated-family-protein	unknown	unknown	gnl\|CDD\|132465
NZ_AP013103.1\|WP_172648649.1\|8804273_8805347_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|213811
NZ_AP013103.1\|WP_172648651.1\|8809433_8809967_-\|invasion-associated-locus-B-family-protein	unknown	unknown	gnl\|CDD\|369076
NZ_AP013103.1\|WP_016843340.1\|8818473_8818833_-\|response-regulator	unknown	unknown	gnl\|CDD\|381144
NZ_AP013103.1\|WP_016847028.1\|8794921_8795617_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213191
NZ_AP013103.1\|WP_026192223.1\|8808170_8808614_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013103.1\|WP_172648650.1\|8808661_8809420_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237874
NZ_AP013103.1\|WP_172648655.1\|8817463_8818081_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_AP013103.1\|WP_172648648.1\|8802592_8803426_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NZ_AP013103.1\|WP_172648654.1\|8816480_8817395_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236819
NZ_AP013103.1\|WP_016847027.1\|8794172_8794922_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213186
NZ_AP013103.1\|WP_172648653.1\|8814680_8815733_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_AP013103.1\|WP_172648656.1\|8819138_8820026_+\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|226264
NZ_AP013103.1\|WP_172649255.1\|8795909_8796842_-\|AraC-family-transcriptional-regulator-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|378890
NZ_AP013103.1\|WP_172648645.1\|8797569_8801112_-\|urea-carboxylase	unknown	unknown	gnl\|CDD\|274264

Protein	Function_ID	Function_description	E-value
NZ_AP013103.1\|WP_172648647.1\|8801750_8802596_-\|DUF1989-domain-containing-protein	gnl\|CDD\|163257	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	2.14398e-104
NZ_AP013103.1\|WP_069275942.1\|8820595_8821375_+\|histidinol-phosphatase	gnl\|CDD\|238819	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.	7.21914e-135
NZ_AP013103.1\|WP_172648652.1\|8810005_8814343_-\|YadA-like-family-protein	gnl\|CDD\|380308	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA. EmaA (extracellular matrix protein adhesin ) is an outer membrane protein first described in Aggregatibacter (Actinobacillus) actinomycetemcomitans, a member of the Gammaproteobacteria. It is a glycoprotein, and has a C-terminal beta-barrel domain that marks it as an autotransporter. It serves as an adhesin that binds collagen, the most abundant material in the host extracellular matrix. It shares homology with the collagen-binding protein YadA of Yersinia enterocolitica.	5.71883e-16
NZ_AP013103.1\|WP_172648644.1\|8792883_8794176_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	2.1624e-53
NZ_AP013103.1\|WP_137476924.1\|8803422_8804241_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.77945e-44
NZ_AP013103.1\|WP_172648646.1\|8801115_8801754_-\|urea-carboxylase-associated-family-protein	gnl\|CDD\|132465	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	5.19475e-133
NZ_AP013103.1\|WP_172648649.1\|8804273_8805347_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|213811	TIGR03427, ABC_peri_uca, ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived. [Transport and binding proteins, Unknown substrate].	0
NZ_AP013103.1\|WP_172648651.1\|8809433_8809967_-\|invasion-associated-locus-B-family-protein	gnl\|CDD\|369076	pfam06776, IalB, Invasion associated locus B (IalB) protein. This family consists of several invasion associated locus B (IalB) proteins and related sequences. IalB is known to be a major virulence factor in Bartonella bacilliformis where it was shown to have a direct role in human erythrocyte parasitism. IalB is upregulated in response to environmental cues signaling vector-to-host transmission. Such environmental cues would include, but not be limited to, temperature, pH, oxidative stress, and haemin limitation. It is also thought that IalB would aide B. bacilliformis survival under stress-inducing environmental conditions. The role of this protein in other bacterial species is unknown.	4.60966e-14
NZ_AP013103.1\|WP_016843340.1\|8818473_8818833_-\|response-regulator	gnl\|CDD\|381144	cd18160, REC_CpdR_CckA-like, phosphoacceptor receiver (REC) domain of Brucella abortus CpdR and CckA, and similar domains. Two-component systems (TCSs), consisting of a sensor and a response regulator, are used by bacteria to adapt to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis and membrane transport. Response regulators share the common phosphoacceptor REC domain and differ output domains such as DNA, RNA, ligand, and protein-binding, or enzymatic domain. CpdR is a stand-alone REC protein. CckA is a sensor histidine kinase containing N-terminal PAS domains and a C-terminal REC domain. CpdR and CckA are components of a regulatory phosphorelay system (composed of CckA, ChpT, CtrA and CpdR) that controls Brucella abortus cell growth, division, and intracellular survival inside mammalian host cells. CckA autophosphorylates in the presence of ATP and transfers a phosphoryl group to the conserved aspartic acid residue on its C-terminal REC domain, which is relayed to the ChpT phosphotransferase. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.28171e-37
NZ_AP013103.1\|WP_016847028.1\|8794921_8795617_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	3.53701e-113
NZ_AP013103.1\|WP_172648650.1\|8808661_8809420_-\|hypothetical-protein	gnl\|CDD\|237874	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau.	0.00103518
NZ_AP013103.1\|WP_172648655.1\|8817463_8818081_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	0.000541943
NZ_AP013103.1\|WP_172648648.1\|8802592_8803426_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	5.57047e-96
NZ_AP013103.1\|WP_172648654.1\|8816480_8817395_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|236819	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional.	1.96107e-59
NZ_AP013103.1\|WP_016847027.1\|8794172_8794922_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213186	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system. The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).	5.03845e-112
NZ_AP013103.1\|WP_172648653.1\|8814680_8815733_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.7801e-20
NZ_AP013103.1\|WP_172648656.1\|8819138_8820026_+\|N-formylglutamate-amidohydrolase	gnl\|CDD\|226264	COG3741, HutG, N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	8.56499e-93
NZ_AP013103.1\|WP_172649255.1\|8795909_8796842_-\|AraC-family-transcriptional-regulator-ligand-binding-domain-containing-protein	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.7417e-24
NZ_AP013103.1\|WP_172648645.1\|8797569_8801112_-\|urea-carboxylase	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0

>NZ_AP013103.1|WP_172648649.1|8804273_8805347_-|ABC-transporter-substrate-binding-protein
MNKFVFFLRSVVIGCAVVLAAAPAADAAPKKSFKVAWSIYVGWMPWGYAADTGIVKKWADKYGIAIEVKQFNDYVESINQYTAGGYDAVTITNMDALSIPAAGGVDTTAVVMGDFSNGNDAVILKNKADLAAIKGQTVNLVEFSVSHYLLARALETSKMSEKDVKVINTSDADIAAAYKTPDVSAVVTWNPIVTEILGSPDAKKVFDSSQIPGEIMDLMVVNTAVAKDNPDFAKALVGIWYETLSKMTANDAAAKAAKEAMAKASGTDLAGFDSQLSTTKLFDKATDAEAFTRSQTVGVTMDRVRKFLFEKDLLGKGAKSADAVGIELADKSVLGDNANVKLRFDPTYMDEAAKGKL
>NZ_AP013103.1|WP_137476924.1|8803422_8804241_-|ABC-transporter-permease
MRLVNIRPGRQTRFYLLALPFLLVAIAYFAGSSARLAQNPNDKLLPALPSMVQAVKQMAFEVDPRTGSYLMASDTVASLGRLGSALAISTVAALVLGIVIGLLPGANALLGPFVSVTSMVPPLALLPILFIVMGLGENSKIALIVIGTLPCMIRDLAMKVQELPREQIVKAQTLGASTWQIALRVAMPQTLPRLIDVLRLQLGPAWLFLIAAEAIASDSGLGYRIFLVRRYLAMDVIIPYVAWITLLAFLIDVGLRVMQRKLFPWFASVRAE
>NZ_AP013103.1|WP_172648648.1|8802592_8803426_-|ABC-transporter-ATP-binding-protein
MSAIRFDDVWKEYGDHIVVERITMEVEPRAFIALVGPSGCGKTTLLRMLLGEEQPTRGQIQVDGKPLPGEPDADRGVVFQRYSVFPHLTVLQNVMLGRELRDAKVTGRLFGAARRAAAEEAMKLLAEVGLAGQEGKYPSALSGGMQQRLALAQAIMRGPKILLLDEPFGALDPGIRADIHLLMKRLWNETHLTVVMVTHDLSEAFGLATRVIALERQRNRPEERDRYGATVSRDLEIFPRRSAEPRSITQPAPTGTTRSGKEHQPGRPGALVLKEQP
>NZ_AP013103.1|WP_172648647.1|8801750_8802596_-|DUF1989-domain-containing-protein
MILSEEQKAEIAAHTRRYNELKAAGQEHAPRALPAPTARDAAPIDDDAVIHRETIPSGWYWTTRLNRGDTLRIVNTSGASTVSLLAWNSADTTERLNHADTIKVQWAARLQKGRVLLSDMGRALLGITEDSSAAHDAVVGGSTAATNLAKYGDGNFRNTRDNFILAAAKLGLDRRDVHPCVSFFAPVATDADGKFIWSEQRRQQDDFVDLRAEMELLIALSNCPHPLDPAKAYPQAGVEIVRYRAAAPAADDLCRTATAEAVRAYQNNALYLGETLEGAVR
>NZ_AP013103.1|WP_172648646.1|8801115_8801754_-|urea-carboxylase-associated-family-protein
MTVQSVRTGGRIVLDVEIPARKPWSAIIRKGQTLRITDSHGQQAVDTLFYCAGDFGERYSGQDTLRAQGSAYVGLGTRIMSNEGRVMLRVTADSCGLHDTSAGACSCESNTVRFGHQTRYQHACRENFVIEAAKYGMSKRDIVPNLNFFMNVPIDPAGNFTVVDGVSKPGDAIELVAEMDVLCLISNCPQINNPCNGFFPTPVQVTIFEPEA
>NZ_AP013103.1|WP_172648645.1|8797569_8801112_-|urea-carboxylase
MFSKVLIANRGEIAGRIGRTLRRMGIGSVAVYSDADRFTRPVLDADEAVRIGPAPAAESYLNVDAIMAACLATGAQAVHPGYGFLSENRRFAERLAGHGIKFIGPRPEHLDAFGLKHRAREIAERSGVPLLPGSGLLETIDEAVQQAEAIGFPVMLKSTAGGGGIGMQLCHDMATLRERFESVQRTARASFGDARVYLERFVARARHIEVQIFGNGKGDVVALGERDCSLQRRNQKVFEETPAPGLSADIRRRLHAAAVSLGKAVSYESAGTVEFIYDVERDDFYFLEVNTRLQVEHPVTEQVTGVDLVEWMIRQAAGDDVLGQAGALAPKGAAIEVRLYAENPGTGFRPSAGRLTQVSFSPDARIDGWIETGTEVSPFYDPMLAKIIVSAETREAAIARLSQALDDTVVAGIETNLDYLRAIAASDVFRGGQVATSVLGAFAYRPRTIEVVAPGAQSGVQELPGRLHLWHVGVPPSGPMDERSFRLANRVVGNPEVTTALELTVNGPTLRFNADAIVALSGARMRSSLDGTDVAYDEPLAVRAGQTLAIGSIKGPGQRSYLAVRGGIDVPEILGSRAVFALGAFGGHATGSLKAGDVLHIGAEPSGLAAPRRATEDERPQLTSAWQIGVVYGPHGAPDFFLDEDIETLFAASYEVHFNSARTGVRLIGPKPRWARADGGEAGLHPSNIHDNAYAVGSIDFTGDMPIILGPDGPSLGGFVCPAVVARDELWKVGQLRPGDTVRFVPVKRDDPVAGPTVLRAPELGSAVVGRNDDGPIPVVYRRAGDDNLLVEYGPMELDIALRLRVHVLAQALEEAKLASLIDLTPGIRSLQIHYDGTALSRGKLLDVLRRIERELPPVDAMRVPSRTVHLPLSWRDPQAELAMRKYQELVRADAPWCPSNVEFIRRINGLASEDDVRRIVFDADYFVLGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTPENAVGIGGAYMCIYGMEGPGGYQLFGRTIQVWNTWRTTRVFEPNHPWLLRFFDKIRFFPVDADELLDARAAFPHGQYDIRIEEGEFSYADYAKSLAEARPSIAAFKATQQSAFDAERQRWREMKLDETPVESIDAGVTATGIPDGQIGAFSEVPGNIWKVLVEEGAKVAAGDVLAIIESMKMEISVHAPAAGRIASVPVKPGQTLRAGDVVALLRPG
>NZ_AP013103.1|WP_172649255.1|8795909_8796842_-|AraC-family-transcriptional-regulator-ligand-binding-domain-containing-protein
MVSAAGLAIDDVEDRKLRIDARAQVRLLELAARELQDDCFGLHLAQGFELGEIGLLYYVMASSEHLVDALRIGGRYCAINNEGVRLRSSLDRCFAIGFEYVNIDRSSDRHHAEFWLVTLIRICRALTDGRLVPKQIKLKHARRETPLDVRSLLGCEIEFAADRDELLFPSRIGALPVVGADLHLNRMLLQYADEALRNRASRRSSVRSRVEGHIAQLLPHGKANAEAVARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISKIAWLLGYSEVSSFTHAFVRWTGLTPRAYRSSNGDR
>NZ_AP013103.1|WP_016847028.1|8794921_8795617_+|ABC-transporter-ATP-binding-protein
MLEVRNLHAYYGKSHILQGVDLDIAAGEVVSLLGRNGVGRSTTVKAIMGEVPPQGTIRFKGQDIAGLPSHKIARLGLGYVPEHRDIFPGLTVRQNLILGIKDPRRPGKWRLQEMLDMFPNLAARADTPAGVLSGGEKQMLTTCRTLLGDPELMMIDEPTEGLAPLIVQQVGELIARIAKAGVAILLVEQKLSIAMKISNRVYIMGHGRVVFEGTPDQLKSNAAVREEWLEV
>NZ_AP013103.1|WP_016847027.1|8794172_8794922_+|ABC-transporter-ATP-binding-protein
MTAAIQVNAVEKSFGNVQIIRDLNLSVAKGERHAIIGPNGAGKSTTFNLISGHIKPTSGEIRLNGEVTSGLRPFEINRRGLSRSFQVTNVFARMTVWENVRCAVLWATGHRYAFWKNVDNLPEVKQRTAQILDDIHLSHRRDVPAGLLTYAEQRELEIGITIAGGASVIMLDEPTAGMSHAETERAVALIRRLTEGRTLVIVEHDMSVVFGLADRISVLVYGHIIASGTPEEIRGNPKVKEAYLGEEID
>NZ_AP013103.1|WP_172648644.1|8792883_8794176_+|branched-chain-amino-acid-ABC-transporter-permease
MTNASTPSIAAAKQEPGSALSFYAVWLLAAIALVVLPLVFGAGGSLTSFCLIGIAIIFALSYNILLGQTGLLSFGHAVQYGLGGFLAVHVMNAVASHNWPIPLPVIPLVGGIGGMAFALLVGWVMTKRAGTVFAMISLGIGELVASSSLILRSVFGGESGITTDRTSLMPMFGWTFGPQIQVYYLIAFWVMVSAIAMYALTRTPLGRICNAVRDNPERVEFIGYDPHVVRYLAYMFAGFFAGIAGGLTAINFEIANSAYLGATQSGLVLFSAFIGGTAYFFGPILGAILVTYLQLGLTSVTSVWQLYFGIIFIGIVMFAPGGIAGILMKHRPLIRAGTLSTVIPSYLVAAIPTLALALGVILTIETVARFSGGEPINLLGIPFVATAPTTWATAAVLLVGGFLVARITWRRVAEAWDRAATVARDRGYLA
>NZ_AP013103.1|WP_026192223.1|8808170_8808614_+|hypothetical-protein
MRTTGLVLATVGALGVSAIAAPAPAEARWGHGGWGWGPALAGGLIAGAVVGGLASSAYGYPGYAYGYGYPGYGYGYGYSPAYYGYGGYAYDDGYYAAPYRWGGGYTTTYYSGYRPAYYGYRYRHVVRPAYAYYRGGYPRWHHRWRHW
>NZ_AP013103.1|WP_172648650.1|8808661_8809420_-|hypothetical-protein
MPIRNPERRIEVRDERMNTPMRLKTPILIFTAVVVAALSAAGVVGYAQQMQPAQSQPMPLQPATPAPAKKPAAAAKPQPHKQRPQETPPPSAAASVLPQQAGQQPTVFDEHARQGNIVTCANLFGTLGRGLAMNSNYTAQSQWDAKAGNSHSVQSLVALAPNQPSQATPAANQQAAGIVFAAPVGSSCEGNLVRVTPRTENCSTVAAELAKLNGQTGALGELATMALPNGAQVVLIPLGNACVAVTALRVAG
>NZ_AP013103.1|WP_172648651.1|8809433_8809967_-|invasion-associated-locus-B-family-protein
MIWLGAAAGAAAQGAPPTGYAVKPSDVAVPEGETLGEFRRMIQPFKNWTLICDESLKSKRRVCNVTQSIVNAQGAVAFNWSLIATADGKPLMAMRIPAAAGVGAQIELAMGDSPDRIVAQTDRCDASFCFATVAIGNVLRRHIRAATPCRVSYQLPQGPIVLEAPLDGLSGVLAKLK
>NZ_AP013103.1|WP_172648652.1|8810005_8814343_-|YadA-like-family-protein
MAVAHNSTRSLKHQGRTGFVRSWVATGDTDSRSLRRRLMAVLRLAHRALGVKRDRLGLGALGVGGSTVATTLGALAVALITASAASAGSVALGGGSATGTDSVAIDTNSSASGLRAIAIGSGANAAGLDAVAQGTSTSAGAQNAIAIGFQSIASQLNSLYLGSRTAAGTGALATSAIGIGTDVTASQVDAIAVGRSSVASAQYSVALGLNAKATGTGGAMALGQGTVSSGVNSVALGVQAVATGAGTSALGTFANATGGNATAVGVSSLASANYAWAGGWASVASGDSSTALGKQAVASGINSFAGGSSSNAAGAFAVALGNQAQALSTGGSVAIGSGAVVATAATGGVALGNNANSGGVNSIATGVGASAAGTSSLAIGTASSASAAASTAVGNTAVASGQNASSFGSGASAAGDNSLAAGVSASARGIASTALGIGSKAQATSATAVGASAFATATNDVALGFNAITDGGLNGGSGGATALGNNSFAGGSNAIAVGTSAQADSADAVAIGTSATATGGKAVAIGAGNVAYGNGAVAIGDPSYASGTGAFTGGANNIANSDGTATATAANQANGAVAIGNNNKAIGQGSVALGNGSTAGAAGLAGNIALGNGATAAASSGDVALGSGSVTAAAVNTPNTVINGTTYSFAGTTATSTVSVGALGAERTITNVAAGRISNSSTDAINGSQLWATNQAVDGLATTVNNINTGGGIKYFHANSTLADSSAVGTDSVAIGPVSTATGSGSVSIGNGANAANANDIALGSGSQTGTAVQTASIVIGGNTYSFAGTTPTSTVSVGSVGNERTITNVAAGRVSNGSTDAINGSQLFAATSAIDSLSTVVSNGLTHYYGVNDGGTQQANYNNNGATGVNSMAAGVAASATAANATALGFNTQASVADGVALGSGSISNRALAPASGTIGGTIIPYNTTDLALLGAVSVGNATSYRQITNVADGTQESDAVTVRQLTGALTSFATTTTKYFHANSTLADSLAVGNNSVAVGPATVVNGDNGIGMGFGATVAQTAPGGIAIGQNSVSNFADSIAFGTSAQASGVQSVSIGAGSQTTNPTSVALGPNAKATAQAGDVALGANSTTSTVVATSSTSIGGTTYNFAGTTPTSTVSVGSAGAERTITNVAAGQITQTSTDAINGSQLWATNTSLAALYTTVSNISTGGGGVKYFHANSTAADSIATGAESVAIGPQSVASGANAISMGNGSAASADNSVAIGAGAKATAANSLALGANATTTANLSDAAYTPVVGKTVAGVATGEVSVGSSGAERRVTNVAAGSAATDAVNVSQLQALASSSIRYDTDGSGNTTNKLTLNSGNGAPVTISNVAAGVAGTDAVNVNQLNSAFEQLNGRIGEVRQDAWRAAAIGMAAASLRYDDRPGKVSASAGGGLWRSQGALAFGIGYTSENGRLRSNAAATTAGGDWGVSAGVSLTLN
>NZ_AP013103.1|WP_172648653.1|8814680_8815733_-|helix-turn-helix-transcriptional-regulator
MQPDDKTPAHAAQLLEHVPLPREPRNIRDVTAAPPRLFSTRYYPPSEQFEVWKTRMASLVDVAPPEGHGPARGFLVEYLTCNMADVVFTSGRFAAQSFARVIKPSHGTPVDIWWLYRVRSGEARFETAERRIHAGPGAMFLISLDQDFRGSITDYDGLVLGLPRQSFADVADQLDGVCNILLEGNLIELLADYLDRLETRITLMSSEELRQAGRATAQMIAACIQLSSDRLEQARGAIESVLFERARLYIESHLADFDLTPDRIAQQLRISRSALYRAFESVGGVAGYILRKRLRAAHAELVSSTGRQVQEIAYRHGFKLASDFTRAFRREFGVSPREMRERMRRRSTTG
>NZ_AP013103.1|WP_172648654.1|8816480_8817395_-|LysR-family-transcriptional-regulator
MPLNPRHVDLFREVVRHNGITKAALSLRVGQPFISRAIARLEREIGFALFERGRGGVTLTPEGEIFLREVERNQAGLEYLARAARGIRERGSGTLRIACLPAFTYSLMPRIVSSFLRKNPDIVVSVAVHSPERVWSLVASGQCDVGLARPQAGFAAVDDELLMTTEAVCVLPRQHRLRSKRSIAAQDLRGEPMIAASPSAPHRSRFERILDEAKVEIKTVAEIQYSMQRCALVAQGLGFSIVDPIVARDFASSRIVLKPFVPRLEIATMLLLPSQRPRSRLALQFCDLLRAETADYRKSARVQA
>NZ_AP013103.1|WP_172648655.1|8817463_8818081_+|GNAT-family-N-acetyltransferase
MHPSSNHASFATDLILLTRITGPESSRARQLREAAMLRRLDRGTSDRPNTACLAAARDQVDTAAAFAIEAAGSGDLLGVSGFGAIDRHEKRATFAPIWTIGRLNEAVLVSHVAHLMTRYAFEVLEVERAELHLDWRLRRMLDLYVDLGFRCEGRLRAYFAADEDPSADAAVLSMVRSEWPSVVRRQRAVLAGETWRYRLPSDRPP
>NZ_AP013103.1|WP_016843340.1|8818473_8818833_-|response-regulator
MPKILLAEDDTDMRRFLVKALENAGFKVSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDGIELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKLLAA
>NZ_AP013103.1|WP_172648656.1|8819138_8820026_+|N-formylglutamate-amidohydrolase
MTEFAGELSPPFEIVEPQAWRAPIIFNSPHSGSIYPAEFLEASRIDVVSLRRSEDSFMDELIAGLSDRGFPIVRVNFPRSYVDVNREPYELDPRMFTGRLPSFANTRSMRVAGGLGTIPRVVGDGQEIYRERLDVDEALRRIEVLYKPYHRALRRLINKAHQAFGAVIVVDCHSMPSVGVSRDEPRRPDVVIGDRYGTSCAPLLPDLVEEIMSSLGYSIGRNKPYAGGFITEHYGNPASGLHTVQIELNRAVYMDERRRERGPRFAQMAADFATLADALAKIPFGDLGPFQAAAE
>NZ_AP013103.1|WP_069275942.1|8820595_8821375_+|histidinol-phosphatase
MTVIDFTAFIGRLATASGETILPFFRTSLSVDNKSSNDFDPVTEADRAAEAVMRRLIKSNFPQHGIVGEEFGNEREDADYVWVLDPIDGTKSFIAGFPIWGTLIALLHKGTPVFGMMHQPYIGERFSGDNGSAHYSGPSGERRLSVRRCAALKEATVFTTSPLLMNPDDRARFGRIENAARLSRYGGDCYSYCMLAAGHLDLVVETELKPYDIAGLIPIVTGAGGVVTTWDGKPAQSGGRIIAAGDPRVHEAAMKLLNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP013103_2	2.1\|5082529\|48\|NZ_AP013103\|CRISPRCasFinder	5082529-5082576	48	NZ_AP013103.1	902867-902914	0	1.0

1. spacer 2.1|5082529|48|NZ_AP013103|CRISPRCasFinder matches to position: 902867-902914, mismatch: 0, identity: 1.0

tcaggtgcgcaattgcgcacctgggaatgacagtcacggcggcggcgg	CRISPR spacer
tcaggtgcgcaattgcgcacctgggaatgacagtcacggcggcggcgg	Protospacer
************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP013103_3	3.1\|7983972\|31\|NZ_AP013103\|CRISPRCasFinder	7983972-7984002	31	NZ_CP047219	Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed1, complete sequence	131070-131100	8	0.742
NZ_AP013103_3	3.2\|7984032\|31\|NZ_AP013103\|CRISPRCasFinder	7984032-7984062	31	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	196745-196775	9	0.71
NZ_AP013103_3	3.2\|7984032\|31\|NZ_AP013103\|CRISPRCasFinder	7984032-7984062	31	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	239797-239827	9	0.71

1. spacer 3.1|7983972|31|NZ_AP013103|CRISPRCasFinder matches to NZ_CP047219 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

aacgatcgaggagttgtctgccagcaataac	CRISPR spacer
aacgatcgaggagcagtctgccaaggttagt	Protospacer
*************. ********. . **..

2. spacer 3.2|7984032|31|NZ_AP013103|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 9, identity: 0.71

caggctccgccgcctggacgtcagcgaaaat	CRISPR spacer
tgcgctccgccgcctggacggcggcgaggcg	Protospacer
.. ***************** *.****..

3. spacer 3.2|7984032|31|NZ_AP013103|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 9, identity: 0.71

caggctccgccgcctggacgtcagcgaaaat	CRISPR spacer
gattgcccgccgcctggacatcaccgaaagc	Protospacer
 *   .*************.*** *****..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

85806 : 181352

Tetraselmis_virus(12.5%)

protease,holin,transposase,integrase

attL 89588:89606|attR 148980:148998

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172645854.1\|85806_87537_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A2P0VNF3	Tetraselmis_virus	5.7e-09	26.7
WP_172648942.1\|87544_89632_-	tetratricopeptide repeat protein	NA	NA	NA	NA
89588:89606	attL	NA	NA	NA	NA
WP_172645855.1\|89971_90436_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
89588:89606	attL	NA	NA	NA	NA
WP_172648943.1\|90482_91241_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_016848145.1\|91286_91454_-	hypothetical protein	NA	NA	NA	NA
WP_172645856.1\|91504_91924_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_172645857.1\|92002_92287_-	hypothetical protein	NA	NA	NA	NA
WP_172645858.1\|92365_92770_-	DUF3597 domain-containing protein	NA	NA	NA	NA
WP_172645859.1\|93052_93553_-	GTP-binding protein	M1NN89	Moumouvirus	3.8e-06	31.4
WP_172645860.1\|93552_95304_-	OmpA family protein	NA	NA	NA	NA
WP_172648944.1\|95305_95677_-	hypothetical protein	NA	NA	NA	NA
WP_141713569.1\|95831_96542_-	response regulator	NA	NA	NA	NA
WP_018269506.1\|96537_97608_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_069279178.1\|97745_98171_+	hypothetical protein	NA	NA	NA	NA
WP_016848135.1\|98394_98847_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_172645861.1\|98888_99503_+	isochorismatase family protein	NA	NA	NA	NA
WP_016848133.1\|99489_99819_+	hypothetical protein	NA	NA	NA	NA
WP_016848131.1\|101147_101339_-	hypothetical protein	NA	NA	NA	NA
WP_172648945.1\|101717_102425_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_172645862.1\|102444_103416_+	ABC transporter permease	NA	NA	NA	NA
WP_028340412.1\|103458_104475_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_172645863.1\|104552_106676_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_172645864.1\|106672_107770_+	hypothetical protein	NA	NA	NA	NA
WP_069279185.1\|107766_109263_+	sugar ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.6e-15	30.1
WP_172645865.1\|109380_109755_-	hypothetical protein	NA	NA	NA	NA
WP_016848120.1\|109805_110072_-	hypothetical protein	NA	NA	NA	NA
WP_016848119.1\|110079_110889_-	sterol desaturase family protein	NA	NA	NA	NA
WP_172645866.1\|111043_111301_+	recombinase family protein	M9Q1K0	Clostridium_phage	1.6e-05	57.4
WP_172645867.1\|111718_113020_+\|integrase	integrase family protein	NA	NA	NA	NA
WP_172645868.1\|113407_113983_-	hypothetical protein	NA	NA	NA	NA
WP_172645869.1\|116114_117060_+\|transposase	IS630 family transposase	A0A2P0VP61	Tetraselmis_virus	1.6e-13	23.7
WP_172648946.1\|117185_118388_+	acyltransferase	NA	NA	NA	NA
WP_028182369.1\|118828_120433_-\|transposase	IS66-like element ISBj7 family transposase	A0A218MNE7	uncultured_virus	6.1e-66	33.7
WP_172648947.1\|120505_120775_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_172645870.1\|121136_122858_+\|transposase	IS21 family transposase	NA	NA	NA	NA
122198:122216	attR	NA	NA	NA	NA
WP_038952109.1\|122862_123630_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.7e-19	27.4
122198:122216	attR	NA	NA	NA	NA
WP_172645871.1\|123892_125098_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_172648948.1\|125109_125991_-\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	9.2e-32	31.8
WP_172645872.1\|126259_126673_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_172645873.1\|127656_129723_-	recombinase family protein	NA	NA	NA	NA
WP_172645874.1\|129715_130468_-	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_097669842.1\|130632_130893_-	hypothetical protein	NA	NA	NA	NA
WP_172645875.1\|135200_135809_-\|integrase	site-specific integrase	A0A142F1N9	Bacillus_phage	7.8e-06	22.0
WP_172645876.1\|135805_136720_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1GBB1	Mycobacterium_phage	2.0e-05	28.6
WP_172645877.1\|136719_137958_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_157158178.1\|138168_138540_-\|transposase	transposase	NA	NA	NA	NA
WP_172645878.1\|138624_139512_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_172645879.1\|140009_140432_+\|transposase	transposase	NA	NA	NA	NA
WP_018273742.1\|140428_140785_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_172645880.1\|140835_142386_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.0e-81	38.7
WP_172648949.1\|142433_143033_+	UPF0149 family protein	NA	NA	NA	NA
WP_172648950.1\|144558_145482_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_172645881.1\|145445_145703_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_172645882.1\|145699_146902_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_172645883.1\|146892_147972_-	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
WP_172645884.1\|147968_148658_-	conjugal transfer protein TrbF	NA	NA	NA	NA
WP_172645885.1\|148661_150023_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_172645886.1\|150019_150340_-	putative entry exclusion protein TrbK-alt	NA	NA	NA	NA
WP_172645887.1\|150350_151109_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_172645888.1\|151105_153544_-	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_172645889.1\|153551_153827_-	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_172645890.1\|153826_154168_-	TrbC/VIRB2 family protein	NA	NA	NA	NA
WP_172645891.1\|154164_155163_-	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_172645892.1\|155962_156775_+\|holin	phosphocholine cytidylyltransferase family protein	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	3.6e-06	26.5
WP_172645893.1\|157458_158571_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_172645894.1\|158830_160042_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_172645895.1\|160595_161798_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	2.0e-05	32.0
WP_172645896.1\|162606_163227_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_172645897.1\|163260_164397_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_172645898.1\|164407_165250_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_172645899.1\|165246_166242_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_172645900.1\|166354_166525_+\|transposase	transposase	NA	NA	NA	NA
WP_172645901.1\|166724_168563_+	hypothetical protein	NA	NA	NA	NA
WP_172645902.1\|169407_170217_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_172645903.1\|170910_171678_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.6e-19	27.8
WP_172645904.1\|173469_174105_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_172645905.1\|174705_176040_-\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	3.3e-49	44.4
WP_172645906.1\|176494_177664_-	beta-lactamase family protein	NA	NA	NA	NA
WP_172645907.1\|178416_179262_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.9e-35	35.0
WP_172648951.1\|179222_181352_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

2025116 : 2096113

Paenibacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172649038.1\|2025116_2026676_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.0e-83	38.4
WP_172646725.1\|2026705_2027275_+	YecA family protein	NA	NA	NA	NA
WP_172646726.1\|2027731_2028244_+	YecA family protein	NA	NA	NA	NA
WP_129964753.1\|2028787_2029544_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.8e-15	33.9
WP_172646727.1\|2033978_2034188_-	hypothetical protein	NA	NA	NA	NA
WP_129964839.1\|2034838_2036581_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.9e-25	32.4
WP_129964838.1\|2036798_2038142_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_172646728.1\|2040227_2041337_-	hypothetical protein	NA	NA	NA	NA
WP_172646729.1\|2044896_2045526_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_028344151.1\|2046471_2047494_-	hypothetical protein	NA	NA	NA	NA
WP_028344152.1\|2047486_2048056_-	hypothetical protein	NA	NA	NA	NA
WP_028344153.1\|2048052_2049015_-	hypothetical protein	NA	NA	NA	NA
WP_028344154.1\|2049011_2050217_-	hypothetical protein	NA	NA	NA	NA
WP_035633305.1\|2050235_2051033_-	DUF3050 domain-containing protein	A0A1L7N1A4	Ralstonia_phage	1.2e-30	36.2
WP_028344156.1\|2051054_2052242_-	hypothetical protein	NA	NA	NA	NA
WP_028344157.1\|2052238_2054236_-	B12-binding domain-containing radical SAM protein	NA	NA	NA	NA
WP_028344158.1\|2054251_2055598_-	radical SAM protein	NA	NA	NA	NA
WP_051448133.1\|2055597_2056533_-	hypothetical protein	NA	NA	NA	NA
WP_051448134.1\|2056522_2057377_-	hypothetical protein	NA	NA	NA	NA
WP_155258764.1\|2057379_2058747_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA
WP_028344159.1\|2058750_2060619_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_172646730.1\|2060651_2061113_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_172646731.1\|2061313_2062225_-	hypothetical protein	NA	NA	NA	NA
WP_051448136.1\|2062324_2063530_-	S8 family serine peptidase	NA	NA	NA	NA
WP_172646732.1\|2066802_2068071_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	4.2e-94	46.7
WP_035633702.1\|2069033_2070413_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_028344453.1\|2072148_2073297_+	N-methyl-L-tryptophan oxidase	NA	NA	NA	NA
WP_172646733.1\|2074664_2075432_-\|transposase	transposase	NA	NA	NA	NA
WP_028343854.1\|2075708_2076707_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_028343855.1\|2076703_2077045_+	TrbC/VIRB2 family protein	NA	NA	NA	NA
WP_172645889.1\|2077044_2077320_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_080686996.1\|2079681_2079948_-	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_028344413.1\|2082624_2083026_+	hypothetical protein	NA	NA	NA	NA
WP_172645828.1\|2083150_2083333_-	hypothetical protein	NA	NA	NA	NA
WP_129964766.1\|2083538_2083853_+	hypothetical protein	NA	NA	NA	NA
WP_051448168.1\|2083892_2085662_+	hypothetical protein	M4QHP6	Synechococcus_phage	2.9e-61	30.8
WP_129964765.1\|2085630_2086284_+	hypothetical protein	A0A1D8KT39	Synechococcus_phage	2.1e-09	32.0
WP_129964764.1\|2086320_2087037_+	hypothetical protein	NA	NA	NA	NA
WP_129964762.1\|2091494_2091734_-	hypothetical protein	NA	NA	NA	NA
WP_129964761.1\|2091711_2092173_-	hypothetical protein	NA	NA	NA	NA
WP_155258820.1\|2092710_2092884_-	hypothetical protein	NA	NA	NA	NA
WP_129964760.1\|2093517_2093766_-	hypothetical protein	NA	NA	NA	NA
WP_129964759.1\|2094291_2095053_+	hypothetical protein	NA	NA	NA	NA
WP_129964758.1\|2095069_2095279_+	hypothetical protein	NA	NA	NA	NA
WP_129964753.1\|2095355_2096113_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.8e-15	33.9

DBSCAN-SWA_3

2099246 : 2168725

Stx2-converting_phage(20.0%)

integrase,transposase

attL 2133443:2133472|attR 2136856:2136885

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_028344449.1\|2099246_2100806_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.5e-82	38.2
WP_080687004.1\|2101084_2102296_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_129964753.1\|2102357_2103115_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.8e-15	33.9
WP_080686981.1\|2103172_2103700_+	YecA family protein	NA	NA	NA	NA
WP_051448141.1\|2104550_2105756_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_028344310.1\|2105755_2107726_+	glycosyltransferase	NA	NA	NA	NA
WP_038387930.1\|2107784_2108822_+	hypothetical protein	NA	NA	NA	NA
WP_028344308.1\|2110297_2110693_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_028344311.1\|2111286_2111601_+	hypothetical protein	NA	NA	NA	NA
WP_125459452.1\|2112233_2112509_+	hypothetical protein	NA	NA	NA	NA
WP_155258786.1\|2112547_2112721_-	hypothetical protein	NA	NA	NA	NA
WP_155258785.1\|2115524_2115701_+	hypothetical protein	NA	NA	NA	NA
WP_028344307.1\|2115693_2117763_+	recombinase family protein	NA	NA	NA	NA
WP_028342889.1\|2119872_2120172_-	hypothetical protein	NA	NA	NA	NA
WP_028342888.1\|2120513_2120933_-	hypothetical protein	NA	NA	NA	NA
WP_155258667.1\|2121357_2123049_-	hypothetical protein	NA	NA	NA	NA
WP_075969173.1\|2123706_2124111_-	VOC family protein	NA	NA	NA	NA
WP_129964749.1\|2125485_2125698_-	hypothetical protein	NA	NA	NA	NA
WP_129964748.1\|2126060_2126303_-	hypothetical protein	NA	NA	NA	NA
WP_075969178.1\|2126724_2126991_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_028342886.1\|2127788_2128151_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_155258666.1\|2131282_2131693_+	hypothetical protein	NA	NA	NA	NA
WP_028342883.1\|2131684_2131870_-	hypothetical protein	NA	NA	NA	NA
2133443:2133472	attL	NA	NA	NA	NA
WP_035632400.1\|2133573_2134791_+\|integrase	tyrosine-type recombinase/integrase	A0A0F6SJK8	Mycobacterium_phage	9.2e-06	29.1
WP_028342882.1\|2134787_2135765_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_028342881.1\|2135761_2136787_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_085967261.1\|2138190_2138490_+	Y4bD/Y4pK family protein	NA	NA	NA	NA
2136856:2136885	attR	NA	NA	NA	NA
WP_028342877.1\|2138688_2139177_+	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_028342876.1\|2139556_2141623_+	recombinase family protein	NA	NA	NA	NA
WP_028342875.1\|2142691_2142886_+	hypothetical protein	NA	NA	NA	NA
WP_028342874.1\|2145322_2146816_+	radical SAM protein	NA	NA	NA	NA
WP_028342873.1\|2146827_2148153_+	radical SAM protein	A0A1L7N0Q5	Ralstonia_phage	1.5e-06	26.7
WP_129964744.1\|2148159_2149212_+	hypothetical protein	NA	NA	NA	NA
WP_016842001.1\|2149233_2149866_-	PAS domain S-box protein	NA	NA	NA	NA
WP_016843092.1\|2152671_2152851_+	hypothetical protein	NA	NA	NA	NA
WP_028342871.1\|2153365_2154520_+	hypothetical protein	NA	NA	NA	NA
WP_028342869.1\|2155303_2155810_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_172646734.1\|2158547_2158721_+	hypothetical protein	NA	NA	NA	NA
WP_155258664.1\|2158726_2158870_-	hypothetical protein	NA	NA	NA	NA
WP_028342865.1\|2160162_2160483_-	hypothetical protein	NA	NA	NA	NA
WP_028342864.1\|2161013_2161379_+	hypothetical protein	NA	NA	NA	NA
WP_129964743.1\|2162259_2162568_-	hypothetical protein	NA	NA	NA	NA
WP_051448031.1\|2163022_2163358_-	hypothetical protein	NA	NA	NA	NA
WP_028342862.1\|2163504_2163723_+	hypothetical protein	NA	NA	NA	NA
WP_028342859.1\|2165657_2166008_+\|transposase	transposase	NA	NA	NA	NA
WP_172646735.1\|2168428_2168725_+\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-18	52.4

DBSCAN-SWA_4

4734078 : 4792843

Ralstonia_phage(25.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018272203.1\|4734078_4735143_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_038380498.1\|4735106_4737074_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_026192914.1\|4737075_4737624_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_016843423.1\|4737692_4738178_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_018272201.1\|4738231_4739734_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_016843425.1\|4739751_4740279_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_038380497.1\|4740408_4741722_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_172647751.1\|4742071_4743940_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.0e-44	28.6
WP_016843428.1\|4743945_4744509_+	hypothetical protein	NA	NA	NA	NA
WP_018272198.1\|4744521_4745898_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_018272197.1\|4745946_4747284_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_026192913.1\|4747280_4748807_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_172647752.1\|4748852_4752401_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_018272194.1\|4752397_4753099_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_026192912.1\|4753105_4753882_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_018272193.1\|4753878_4755684_+	serine/threonine protein kinase	A0A0M3SGV8	Mollivirus	2.7e-14	30.7
WP_026192911.1\|4755692_4756673_-	DUF4424 domain-containing protein	NA	NA	NA	NA
WP_018272191.1\|4756761_4757043_-	hypothetical protein	NA	NA	NA	NA
WP_026192910.1\|4757214_4758939_+	hypothetical protein	NA	NA	NA	NA
WP_172647753.1\|4759095_4760874_+	caspase family protein	NA	NA	NA	NA
WP_026192908.1\|4760894_4761539_+	DUF4384 domain-containing protein	NA	NA	NA	NA
WP_038380494.1\|4761676_4763434_-	caspase family protein	NA	NA	NA	NA
WP_018272186.1\|4764145_4764703_+	hypothetical protein	NA	NA	NA	NA
WP_018272185.1\|4764790_4765246_+	cupin domain-containing protein	NA	NA	NA	NA
WP_016844367.1\|4765322_4765517_+	hypothetical protein	NA	NA	NA	NA
WP_038380492.1\|4765562_4766558_-	phosphotransferase	NA	NA	NA	NA
WP_080583245.1\|4766685_4767156_+	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_038380491.1\|4767321_4769064_+	PQQ-dependent dehydrogenase, methanol/ethanol family	NA	NA	NA	NA
WP_172649155.1\|4769184_4769679_+	c-type cytochrome	NA	NA	NA	NA
WP_038380489.1\|4769705_4770302_+	hypothetical protein	NA	NA	NA	NA
WP_172647754.1\|4770362_4772036_-	bifunctional protein-serine/threonine kinase/phosphatase	B0FEC2	Escherichia_phage	3.7e-13	23.8
WP_026192906.1\|4772099_4773359_-	NarK/NasA family nitrate transporter	NA	NA	NA	NA
WP_129965108.1\|4773487_4773814_+	hypothetical protein	NA	NA	NA	NA
WP_038380485.1\|4773996_4776456_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_038380484.1\|4776452_4776782_+	nitrite reductase small subunit NirD	NA	NA	NA	NA
WP_038380483.1\|4776798_4779462_+	nitrate reductase	NA	NA	NA	NA
WP_018272174.1\|4779722_4780178_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_018272173.1\|4780471_4781416_+	amidohydrolase	NA	NA	NA	NA
WP_018272172.1\|4781523_4781766_-	hypothetical protein	NA	NA	NA	NA
WP_018272171.1\|4782037_4783264_+	CoA transferase	NA	NA	NA	NA
WP_028339340.1\|4783502_4783898_+	RidA family protein	NA	NA	NA	NA
WP_038380482.1\|4784133_4784823_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_038380481.1\|4785080_4786313_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_018272167.1\|4786503_4787562_+	phosphotransferase family protein	NA	NA	NA	NA
WP_038380480.1\|4787925_4788840_+	DMT family transporter	NA	NA	NA	NA
WP_018272165.1\|4788952_4790122_-	acetylornithine deacetylase	NA	NA	NA	NA
WP_172646541.1\|4790441_4791383_-\|transposase	transposase	NA	NA	NA	NA
WP_172647755.1\|4791808_4792843_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.7e-14	28.9

DBSCAN-SWA_5

5049835 : 5103883

uncultured_Mediterranean_phage(10.0%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026192863.1\|5049835_5050168_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.3e-12	42.7
WP_026192862.1\|5050428_5052834_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-175	44.0
WP_018272010.1\|5052933_5054355_-	MFS transporter	NA	NA	NA	NA
WP_016848266.1\|5054480_5054834_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_018272009.1\|5054998_5055955_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_018272008.1\|5056162_5057173_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_041482663.1\|5057260_5058313_+	phenylacetaldoxime dehydratase family protein	NA	NA	NA	NA
WP_051110178.1\|5058654_5059830_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_026191947.1\|5059882_5060707_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_018272005.1\|5060920_5061850_-	glycine reductase	NA	NA	NA	NA
WP_018272004.1\|5061972_5063049_+	lytic transglycosylase domain-containing protein	A0A077KC92	Edwardsiella_phage	1.3e-06	37.6
WP_018272003.1\|5063243_5063996_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_018272002.1\|5063992_5064337_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_026192859.1\|5064398_5065379_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_026192858.1\|5065382_5065874_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_018271999.1\|5065988_5066414_-	HIT family protein	NA	NA	NA	NA
WP_018271998.1\|5066466_5067717_-	N-acetyltransferase	NA	NA	NA	NA
WP_018271997.1\|5067873_5068626_-	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA
WP_016845428.1\|5068629_5069097_-	RidA family protein	M1IDR7	Acanthocystis_turfacea_Chlorella_virus	1.3e-29	48.0
WP_018271996.1\|5069362_5070229_+	cell envelope integrity EipB family protein	NA	NA	NA	NA
WP_018271995.1\|5070457_5070859_+	RidA family protein	NA	NA	NA	NA
WP_018271994.1\|5071002_5072322_-	DNA polymerase IV	NA	NA	NA	NA
WP_016845967.1\|5072300_5072600_-	DUF3572 domain-containing protein	NA	NA	NA	NA
WP_016845968.1\|5072828_5073194_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	4.7e-06	28.3
WP_016845969.1\|5073209_5074583_+	PleD family two-component system response regulator	A0A127AWB9	Bacillus_phage	1.8e-21	34.3
WP_041482874.1\|5074664_5075813_-	serine hydrolase	NA	NA	NA	NA
WP_026192855.1\|5076018_5076621_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_018271992.1\|5076754_5077987_+	MFS transporter	NA	NA	NA	NA
WP_100213858.1\|5078490_5079885_+	ammonium transporter	NA	NA	NA	NA
WP_016845975.1\|5079887_5080085_+	hypothetical protein	NA	NA	NA	NA
WP_018271989.1\|5080081_5080612_-	hypothetical protein	NA	NA	NA	NA
WP_018271988.1\|5080721_5080889_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_018271987.1\|5081017_5082343_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_172647830.1\|5082392_5082620_+	hypothetical protein	NA	NA	NA	NA
WP_016848393.1\|5082631_5083381_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_018271985.1\|5083417_5083855_-	DUF983 domain-containing protein	NA	NA	NA	NA
WP_018271984.1\|5083845_5086206_-	ribonuclease R	NA	NA	NA	NA
WP_018271983.1\|5086206_5088978_-	type I DNA topoisomerase	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	8.5e-100	31.5
WP_157183463.1\|5089198_5089549_-	hypothetical protein	NA	NA	NA	NA
WP_018271981.1\|5089610_5090084_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_018271980.1\|5090193_5090967_+	glucose 1-dehydrogenase	A0A0M4JSW6	Mollivirus	1.5e-09	27.7
WP_016843954.1\|5091221_5091380_+	hypothetical protein	NA	NA	NA	NA
WP_018271979.1\|5091437_5092046_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_018271978.1\|5092145_5092556_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_018271977.1\|5092751_5093867_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	3.4e-23	44.3
WP_018271976.1\|5093992_5095231_+	amidase	NA	NA	NA	NA
WP_018271975.1\|5095239_5095836_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_018271974.1\|5096060_5097362_-	dihydroorotase	NA	NA	NA	NA
WP_026192854.1\|5097366_5098320_-	aspartate carbamoyltransferase catalytic subunit	A7RB08	Paramecium_bursaria_Chlorella_virus	8.4e-31	34.4
WP_172649159.1\|5098589_5099324_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_018271972.1\|5099450_5099864_+	hypothetical protein	NA	NA	NA	NA
WP_016843964.1\|5099896_5100349_+	hypothetical protein	NA	NA	NA	NA
WP_018271971.1\|5100509_5102153_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_018271970.1\|5102281_5103052_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_080650431.1\|5103289_5103883_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_6

5188625 : 5235795

Bradyrhizobium_phage(86.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035631661.1\|5188625_5188961_+	integration host factor subunit alpha	A0A1P8CWT5	Bacillus_phage	2.4e-09	34.8
WP_018271909.1\|5189088_5189682_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_035631640.1\|5190044_5190272_-	AlpA family phage regulatory protein	A0A1X9SGM8	Bradyrhizobium_phage	6.9e-16	58.7
WP_172647836.1\|5190268_5190592_-	hypothetical protein	A0A1X9SH09	Bradyrhizobium_phage	3.3e-27	56.5
WP_172649161.1\|5190588_5191665_-	FAD-dependent thymidylate synthase	A0A1X9SGW9	Bradyrhizobium_phage	3.8e-120	62.6
WP_172647837.1\|5191678_5191858_-	hypothetical protein	A0A1X9SGV6	Bradyrhizobium_phage	3.4e-10	62.7
WP_172647838.1\|5191854_5192019_-	hypothetical protein	NA	NA	NA	NA
WP_172647839.1\|5192015_5192513_-	hypothetical protein	A0A1X9SH26	Bradyrhizobium_phage	5.7e-23	39.1
WP_172647840.1\|5192585_5193473_-	TRAP transporter substrate-binding protein	A0A1X9SGU1	Bradyrhizobium_phage	5.8e-135	83.4
WP_155258514.1\|5193662_5194091_-	hypothetical protein	NA	NA	NA	NA
WP_051447887.1\|5194116_5194383_-	hypothetical protein	J7FAQ6	Agrobacterium_phage	2.9e-21	53.9
WP_172647841.1\|5194496_5194826_-	hypothetical protein	A0A1X9SGM2	Bradyrhizobium_phage	3.1e-41	77.6
WP_172647842.1\|5195015_5198444_-	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	A0A1X9SGV9	Bradyrhizobium_phage	0.0e+00	71.2
WP_028340927.1\|5198473_5198803_-	hypothetical protein	NA	NA	NA	NA
WP_172647843.1\|5199001_5199505_-	hypothetical protein	A0A1X9SGT2	Bradyrhizobium_phage	2.0e-55	65.7
WP_172647844.1\|5199723_5200167_-	hypothetical protein	A0A1X9SGS3	Bradyrhizobium_phage	2.0e-51	69.5
WP_172647845.1\|5200163_5200493_-	hypothetical protein	A0A1X9SGL8	Bradyrhizobium_phage	2.4e-33	66.1
WP_035631636.1\|5200489_5200750_-	hypothetical protein	A0A1X9SGK7	Bradyrhizobium_phage	1.6e-40	90.6
WP_172647846.1\|5200746_5201187_-	hypothetical protein	A0A1X9SGT0	Bradyrhizobium_phage	1.4e-36	53.8
WP_172647847.1\|5201186_5201681_-	hypothetical protein	A0A1X9SGY2	Bradyrhizobium_phage	2.8e-54	66.9
WP_028340922.1\|5201677_5201875_-	hypothetical protein	NA	NA	NA	NA
WP_172647848.1\|5202132_5202942_-	hypothetical protein	A0A1X9SGU5	Bradyrhizobium_phage	2.3e-74	63.8
WP_172647849.1\|5202957_5203914_-	YqaJ viral recombinase family protein	A0A1X9SGT6	Bradyrhizobium_phage	1.0e-100	64.7
WP_172647850.1\|5203928_5204606_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.1e-80	63.7
WP_028340920.1\|5204602_5204842_-	hypothetical protein	NA	NA	NA	NA
WP_172647851.1\|5204831_5205779_-	radical SAM protein	NA	NA	NA	NA
WP_172647852.1\|5205775_5206363_-	hypothetical protein	A0A1X9SGK6	Bradyrhizobium_phage	2.4e-84	77.6
WP_172647853.1\|5206340_5206691_-	hypothetical protein	A0A1X9SGR1	Bradyrhizobium_phage	5.4e-28	54.4
WP_028340916.1\|5206690_5207086_-	hypothetical protein	NA	NA	NA	NA
WP_172647854.1\|5207201_5207810_-	single-stranded DNA-binding protein	A0A1X9SGJ7	Bradyrhizobium_phage	1.8e-39	62.3
WP_172647855.1\|5207871_5209437_-	AAA family ATPase	A0A1X9SGS1	Bradyrhizobium_phage	8.5e-222	72.0
WP_028340914.1\|5209641_5210478_-	helix-turn-helix domain-containing protein	A0A1X9SGX1	Bradyrhizobium_phage	9.6e-31	67.0
WP_172647856.1\|5210561_5211203_+	hypothetical protein	A0A1X9SGT4	Bradyrhizobium_phage	1.3e-56	56.8
WP_155258510.1\|5211451_5212171_+	hypothetical protein	A0A1X9SGS6	Bradyrhizobium_phage	7.7e-69	59.8
WP_172647857.1\|5212182_5212464_-	hypothetical protein	NA	NA	NA	NA
WP_028340910.1\|5212552_5212777_-	hypothetical protein	A0A1X9SGR2	Bradyrhizobium_phage	1.7e-11	63.3
WP_172647858.1\|5212987_5213182_-	hypothetical protein	NA	NA	NA	NA
WP_172647859.1\|5213192_5213330_-	hypothetical protein	NA	NA	NA	NA
WP_172646745.1\|5213340_5214572_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.9e-105	68.6
WP_172647860.1\|5214537_5214789_-	hypothetical protein	A0A1X9SGJ8	Bradyrhizobium_phage	5.6e-11	54.5
WP_172647861.1\|5214781_5215153_-	hypothetical protein	A0A1X9SGQ0	Bradyrhizobium_phage	1.2e-22	45.5
WP_172647862.1\|5215149_5215395_-	hypothetical protein	NA	NA	NA	NA
WP_172647863.1\|5215394_5215589_-	hypothetical protein	NA	NA	NA	NA
WP_155258508.1\|5215585_5215747_-	hypothetical protein	NA	NA	NA	NA
WP_051447876.1\|5215746_5216505_-	hypothetical protein	A0A1X9SGS4	Bradyrhizobium_phage	1.8e-100	67.1
WP_172647864.1\|5216522_5216882_-	hypothetical protein	F8TV33	EBPR_siphovirus	7.8e-30	56.5
WP_172647865.1\|5216884_5218000_-	hypothetical protein	A0A1B0V206	Roseobacter_phage	8.0e-65	40.2
WP_172647866.1\|5218037_5219621_-	ATP-dependent helicase	A0A1X9SGY1	Bradyrhizobium_phage	1.3e-182	62.7
WP_172647867.1\|5219671_5220001_-	hypothetical protein	A0A1X9SGQ1	Bradyrhizobium_phage	1.6e-29	68.5
WP_172647868.1\|5220000_5220372_-	hypothetical protein	A0A1X9SGI8	Bradyrhizobium_phage	1.1e-18	44.4
WP_172647869.1\|5220364_5220736_-	hypothetical protein	NA	NA	NA	NA
WP_155258506.1\|5220739_5221039_-	hypothetical protein	A0A2L0UZQ1	Agrobacterium_phage	4.1e-08	30.1
WP_172647870.1\|5221209_5221698_-	hypothetical protein	A0A1X9SGR4	Bradyrhizobium_phage	1.1e-50	67.1
WP_172647871.1\|5221712_5223938_-	hypothetical protein	A0A1X9SGQ5	Bradyrhizobium_phage	2.2e-207	50.8
WP_028340894.1\|5223978_5224983_-	hypothetical protein	A0A1X9SGX2	Bradyrhizobium_phage	2.6e-91	55.4
WP_172647872.1\|5224999_5226604_-	hypothetical protein	A0A1X9SGP2	Bradyrhizobium_phage	5.6e-120	51.5
WP_172647873.1\|5227220_5227412_-	hypothetical protein	A0A1X9SGG9	Bradyrhizobium_phage	6.8e-17	69.5
WP_028344211.1\|5227395_5227581_-	hypothetical protein	NA	NA	NA	NA
WP_172647874.1\|5227582_5228287_-	hypothetical protein	A0A1X9SGI3	Bradyrhizobium_phage	1.2e-29	39.1
WP_155258773.1\|5228465_5228762_-	hypothetical protein	NA	NA	NA	NA
WP_172647875.1\|5228758_5229136_-	hypothetical protein	NA	NA	NA	NA
WP_172647876.1\|5229132_5229405_-	hypothetical protein	NA	NA	NA	NA
WP_172647877.1\|5229463_5230510_-	hypothetical protein	NA	NA	NA	NA
WP_172647878.1\|5230678_5231131_+	hypothetical protein	A0A1X9SH21	Bradyrhizobium_phage	3.4e-22	51.1
WP_172647879.1\|5231145_5231340_-	hypothetical protein	NA	NA	NA	NA
WP_172647880.1\|5231339_5231606_-	hypothetical protein	NA	NA	NA	NA
WP_172647881.1\|5231661_5232171_-	hypothetical protein	NA	NA	NA	NA
WP_172647882.1\|5232190_5232568_-	hypothetical protein	NA	NA	NA	NA
WP_172647883.1\|5232564_5232861_-	hypothetical protein	A0A1X9SGR8	Bradyrhizobium_phage	1.6e-12	72.1
WP_172647884.1\|5232857_5233061_-	hypothetical protein	NA	NA	NA	NA
WP_172647885.1\|5233050_5233275_-	hypothetical protein	A0A1X9SH72	Bradyrhizobium_phage	6.2e-09	48.4
WP_028344196.1\|5233258_5233522_-	hypothetical protein	L7TP76	Rhizobium_phage	1.2e-11	50.0
WP_172647886.1\|5233523_5234006_-	hypothetical protein	A0A1X9SGP0	Bradyrhizobium_phage	1.7e-08	35.1
WP_172647887.1\|5234005_5234602_-	hypothetical protein	A0A1X9SH15	Bradyrhizobium_phage	1.2e-75	66.0
WP_028344193.1\|5234603_5234981_-	hypothetical protein	NA	NA	NA	NA
WP_172647888.1\|5234983_5235160_-	hypothetical protein	NA	NA	NA	NA
WP_172647889.1\|5235156_5235795_-	hypothetical protein	A0A1X9SH70	Bradyrhizobium_phage	2.0e-68	63.9

DBSCAN-SWA_7

5250501 : 5294704

Bradyrhizobium_phage(93.48%)

tail,terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172647898.1\|5250501_5251035_+	hypothetical protein	A0A1I9SA41	Rhodococcus_phage	3.3e-08	33.7
WP_028340273.1\|5251406_5251700_+	hypothetical protein	NA	NA	NA	NA
WP_028340272.1\|5251696_5251945_+	hypothetical protein	NA	NA	NA	NA
WP_028340271.1\|5252075_5252411_+	hypothetical protein	A0A0F6WBV5	Sinorhizobium_phage	8.6e-23	49.5
WP_155258443.1\|5252407_5252563_+	hypothetical protein	NA	NA	NA	NA
WP_028340270.1\|5252603_5252786_+	hypothetical protein	NA	NA	NA	NA
WP_035631370.1\|5252939_5253194_+	hypothetical protein	A0A1X9SGW3	Bradyrhizobium_phage	6.5e-23	66.3
WP_155258442.1\|5253311_5253578_+	hypothetical protein	NA	NA	NA	NA
WP_028340267.1\|5253585_5254125_+	hypothetical protein	A0A1X9SGW6	Bradyrhizobium_phage	1.7e-81	76.0
WP_155258441.1\|5254121_5254277_+	hypothetical protein	NA	NA	NA	NA
WP_028340266.1\|5254371_5254578_+	hypothetical protein	NA	NA	NA	NA
WP_051447831.1\|5254604_5255111_+	hypothetical protein	A0A1X9SH89	Bradyrhizobium_phage	6.2e-25	39.2
WP_028340265.1\|5255107_5255461_+	hypothetical protein	A0A1X9SH41	Bradyrhizobium_phage	7.6e-46	75.2
WP_028340264.1\|5255463_5255727_+	hypothetical protein	A0A1X9SH32	Bradyrhizobium_phage	5.9e-27	64.0
WP_051447830.1\|5256968_5257400_+	hypothetical protein	W5RV68	Staphylococcus_phage	3.6e-21	54.7
WP_051447829.1\|5257998_5260056_+	collagen-like protein	A0A1X9SGU3	Bradyrhizobium_phage	5.3e-46	42.6
WP_028340262.1\|5260052_5260433_+	hypothetical protein	NA	NA	NA	NA
WP_028340261.1\|5260497_5260914_+	hypothetical protein	A0A1X9SH12	Bradyrhizobium_phage	7.1e-59	79.7
WP_028340260.1\|5260910_5261240_+	thiol reductase thioredoxin	A0A1X9SH79	Bradyrhizobium_phage	7.6e-24	47.7
WP_028340259.1\|5261239_5261452_+	hypothetical protein	NA	NA	NA	NA
WP_035631366.1\|5261467_5262010_+	hypothetical protein	A0A1X9SH24	Bradyrhizobium_phage	3.8e-60	74.5
WP_051447828.1\|5262016_5262574_+	AAA family ATPase	A0A1X9SH05	Bradyrhizobium_phage	9.5e-51	58.9
WP_028340258.1\|5262755_5263433_+	hypothetical protein	A0A1X9SH03	Bradyrhizobium_phage	1.4e-83	68.9
WP_028340257.1\|5263443_5263665_+	hypothetical protein	A0A1X9SGU2	Bradyrhizobium_phage	4.6e-25	72.6
WP_155258449.1\|5263998_5265450_+\|terminase	phage terminase large subunit	A0A1X9SGU8	Bradyrhizobium_phage	3.2e-247	85.5
WP_172647899.1\|5265470_5267069_+	DUF4055 domain-containing protein	A0A1X9SGT3	Bradyrhizobium_phage	7.3e-237	76.9
WP_172647900.1\|5267107_5267398_+	hypothetical protein	A0A1X9SH04	Bradyrhizobium_phage	1.6e-20	58.2
WP_155258440.1\|5267674_5267959_+	hypothetical protein	A0A1X9SH27	Bradyrhizobium_phage	5.0e-32	70.2
WP_155258439.1\|5268482_5269394_+	hypothetical protein	A0A1X9SH84	Bradyrhizobium_phage	1.0e-118	78.0
WP_028340252.1\|5269509_5270490_+	hypothetical protein	A0A1X9SGZ7	Bradyrhizobium_phage	2.8e-162	88.7
WP_028340251.1\|5270581_5270908_+	hypothetical protein	A0A1X9SGT1	Bradyrhizobium_phage	1.1e-06	73.7
WP_028340250.1\|5270923_5271343_+	DUF1320 domain-containing protein	A0A1X9SGZ3	Bradyrhizobium_phage	3.8e-60	83.8
WP_028340249.1\|5271363_5271813_+	phage virion morphogenesis protein	A0A1X9SGU0	Bradyrhizobium_phage	1.5e-30	47.9
WP_028340248.1\|5271812_5272397_+	hypothetical protein	A0A1X9SGS5	Bradyrhizobium_phage	2.0e-59	66.5
WP_028340247.1\|5272432_5273809_+	hypothetical protein	A0A1X9SGZ1	Bradyrhizobium_phage	2.8e-43	53.4
WP_028340246.1\|5273824_5274043_+	hypothetical protein	NA	NA	NA	NA
WP_051447826.1\|5274026_5274383_+	GPW/gp25 family protein	A0A1X9SH13	Bradyrhizobium_phage	3.3e-41	70.4
WP_028340245.1\|5274395_5275274_+\|plate	baseplate J/gp47 family protein	A0A1X9SH02	Bradyrhizobium_phage	7.1e-109	70.5
WP_155258448.1\|5275299_5276493_+\|tail	phage tail protein I	A0A1X9SH73	Bradyrhizobium_phage	9.8e-154	65.8
WP_028340244.1\|5276566_5278834_+	hypothetical protein	A0A1X9SGY8	Bradyrhizobium_phage	0.0e+00	74.3
WP_028340243.1\|5278846_5279038_+	hypothetical protein	A0A1X9SGR9	Bradyrhizobium_phage	6.2e-10	56.1
WP_028340242.1\|5279041_5280559_+	hypothetical protein	A0A1X9SGY6	Bradyrhizobium_phage	9.2e-72	55.6
WP_035631362.1\|5280565_5281141_+	hypothetical protein	NA	NA	NA	NA
WP_051447824.1\|5281215_5282652_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1X9SGY4	Bradyrhizobium_phage	8.0e-235	83.3
WP_028340241.1\|5282744_5283275_+\|tail	phage major tail tube protein	A0A1X9SH49	Bradyrhizobium_phage	2.6e-74	76.0
WP_028340240.1\|5283354_5283630_+\|tail	phage tail assembly protein	A0A1X9SH07	Bradyrhizobium_phage	1.9e-28	71.8
WP_028340239.1\|5283832_5287180_+\|tail	phage tail tape measure protein	A0A1X9SGZ2	Bradyrhizobium_phage	6.4e-17	39.6
WP_028340238.1\|5287237_5287774_+\|tail	phage tail protein	A0A1X9SH66	Bradyrhizobium_phage	4.7e-55	67.1
WP_080686714.1\|5287770_5287995_+\|tail	tail protein X	A0A1X9SGX5	Bradyrhizobium_phage	7.2e-26	67.1
WP_028340236.1\|5288091_5289204_+	hypothetical protein	A0A1X9SGQ9	Bradyrhizobium_phage	1.6e-105	52.2
WP_172647901.1\|5289218_5290385_+	DUF3380 domain-containing protein	A0A1X9SGX6	Bradyrhizobium_phage	1.9e-162	73.7
WP_172647902.1\|5290377_5290776_+	hypothetical protein	A0A1X9SGS0	Bradyrhizobium_phage	4.2e-08	38.2
WP_172647903.1\|5290795_5290981_+	hypothetical protein	A0A1X9SGQ8	Bradyrhizobium_phage	6.0e-10	77.5
WP_028340233.1\|5290980_5291310_+	hypothetical protein	A0A1X9SGX4	Bradyrhizobium_phage	1.8e-20	49.1
WP_028340232.1\|5291498_5293487_+	hypothetical protein	A0A1X9SH39	Bradyrhizobium_phage	0.0e+00	85.0
WP_028340231.1\|5293515_5293983_+	nucleoside 2-deoxyribosyltransferase	A0A1X9SGZ5	Bradyrhizobium_phage	4.1e-63	76.5
WP_051447822.1\|5294017_5294704_+	hypothetical protein	A0A1X9SGY9	Bradyrhizobium_phage	1.6e-103	82.3

DBSCAN-SWA_8

5304902 : 5312698

Bradyrhizobium_phage(100.0%)

integrase

attL 5293489:5293503|attR 5312778:5312792

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5293489:5293503	attL	NA	NA	NA	NA
WP_028340221.1\|5304902_5305430_-	hypothetical protein	A0A1X9SGQ2	Bradyrhizobium_phage	1.7e-41	78.5
WP_028340220.1\|5305457_5305736_-	hypothetical protein	A0A1X9SGN8	Bradyrhizobium_phage	5.4e-31	73.3
WP_051447820.1\|5305732_5306350_-	hypothetical protein	A0A1X9SGV5	Bradyrhizobium_phage	3.6e-99	80.0
WP_028340218.1\|5306412_5306592_-	hypothetical protein	NA	NA	NA	NA
WP_028340217.1\|5306591_5306786_-	hypothetical protein	NA	NA	NA	NA
WP_028340216.1\|5306793_5306988_-	hypothetical protein	NA	NA	NA	NA
WP_172647904.1\|5306984_5307281_-	hypothetical protein	A0A1X9SH19	Bradyrhizobium_phage	1.3e-30	62.5
WP_035631381.1\|5307277_5307748_-	hypothetical protein	A0A1X9SGX8	Bradyrhizobium_phage	3.6e-43	56.3
WP_028340214.1\|5308180_5308492_+	hypothetical protein	NA	NA	NA	NA
WP_028340213.1\|5308500_5309103_+	DUF4118 domain-containing protein	NA	NA	NA	NA
WP_172647905.1\|5309065_5309725_-	DUF2493 domain-containing protein	A0A1X9SGW8	Bradyrhizobium_phage	8.8e-88	69.5
WP_028340212.1\|5309721_5310015_-	hypothetical protein	NA	NA	NA	NA
WP_028340211.1\|5310025_5310316_-	hypothetical protein	NA	NA	NA	NA
WP_028340210.1\|5310320_5310758_-	hypothetical protein	A0A1X9SGN6	Bradyrhizobium_phage	2.8e-37	55.1
WP_028340209.1\|5310786_5311044_-	hypothetical protein	NA	NA	NA	NA
WP_028340208.1\|5311043_5311298_-	hypothetical protein	A0A1X9SGN9	Bradyrhizobium_phage	1.1e-30	76.5
WP_051447818.1\|5311306_5312698_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1X9SGU9	Bradyrhizobium_phage	1.6e-86	44.3
5312778:5312792	attR	NA	NA	NA	NA

DBSCAN-SWA_9

5865443 : 5874984

uncultured_Mediterranean_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016846889.1\|5865443_5866100_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.4e-29	48.8
WP_026192734.1\|5866475_5866853_+	response regulator	NA	NA	NA	NA
WP_018271530.1\|5866972_5867740_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.8e-36	36.6
WP_172648023.1\|5867819_5868725_-	hypothetical protein	NA	NA	NA	NA
WP_018271528.1\|5868825_5870157_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.3e-103	54.5
WP_018271527.1\|5870358_5871156_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.4e-55	48.0
WP_069278413.1\|5871152_5871695_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_016846882.1\|5871855_5872089_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	4.2e-08	63.6
WP_016846881.1\|5872236_5873067_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.2e-43	49.7
WP_016846880.1\|5873143_5873965_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.6e-30	34.8
WP_172648024.1\|5873961_5874984_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	3.1e-23	42.7

DBSCAN-SWA_10

7245015 : 7256097

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018270532.1\|7245015_7248195_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	8.4e-67	22.7
WP_018270531.1\|7248576_7250268_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.3e-15	31.0
WP_018270530.1\|7250437_7251727_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	4.9e-74	41.2
WP_172648209.1\|7251723_7252506_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_172648210.1\|7252518_7253430_-	NAD-binding protein	A0A077SLF7	Escherichia_phage	2.2e-68	48.8
WP_016842859.1\|7253626_7254283_+	aldolase	A0A077SK32	Escherichia_phage	5.2e-48	48.3
WP_016842860.1\|7254316_7254592_+	hypothetical protein	NA	NA	NA	NA
WP_018270525.1\|7254677_7255382_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.6e-13	27.2
WP_016842862.1\|7255365_7256097_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.8e-12	26.3

DBSCAN-SWA_11

8169868 : 8231380

Bacillus_phage(28.57%)

integrase,transposase

attL 8155313:8155327|attR 8211325:8211339

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
8155313:8155327	attL	NA	NA	NA	NA
WP_129964853.1\|8169868_8170981_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	1.5e-07	26.8
WP_129964852.1\|8170977_8171904_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_018269999.1\|8171900_8172902_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	7.8e-19	26.3
WP_080650314.1\|8173046_8173169_+	hypothetical protein	NA	NA	NA	NA
WP_028344409.1\|8173198_8173783_+	YecA family protein	NA	NA	NA	NA
WP_129964851.1\|8174609_8174915_+	hypothetical protein	NA	NA	NA	NA
WP_129964850.1\|8175040_8175220_+	hypothetical protein	NA	NA	NA	NA
WP_129964849.1\|8175226_8175865_-	hypothetical protein	NA	NA	NA	NA
WP_129964848.1\|8175974_8176202_-	hypothetical protein	NA	NA	NA	NA
WP_129964847.1\|8176816_8177308_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_129964846.1\|8177575_8178970_-	amidohydrolase family protein	NA	NA	NA	NA
WP_028343737.1\|8179057_8179951_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_129964845.1\|8181051_8182476_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_162136692.1\|8182531_8183257_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.7e-29	36.9
WP_018269988.1\|8183354_8184050_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_018269987.1\|8184046_8184838_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_080583579.1\|8185047_8186208_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_026192335.1\|8186415_8187213_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_018269984.1\|8187827_8188685_+	DMT family transporter	NA	NA	NA	NA
WP_018269983.1\|8188765_8190022_-	serine hydroxymethyltransferase	A0A219YCZ0	Aeromonas_phage	1.8e-68	41.1
WP_162136765.1\|8190057_8191359_-	hypothetical protein	NA	NA	NA	NA
WP_157183416.1\|8191397_8192225_-	amino acid racemase	NA	NA	NA	NA
WP_168858480.1\|8192702_8194157_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_080586240.1\|8194455_8196114_+	nodulation protein NodU	Q58MH7	Prochlorococcus_phage	2.3e-23	32.0
WP_129964859.1\|8196367_8196643_+	DUF2130 domain-containing protein	NA	NA	NA	NA
WP_080586241.1\|8196727_8197015_+	hypothetical protein	NA	NA	NA	NA
WP_018269974.1\|8197157_8199077_+	hypothetical protein	NA	NA	NA	NA
WP_129964842.1\|8199103_8202067_-	hypothetical protein	NA	NA	NA	NA
WP_129964841.1\|8202171_8202525_-	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_016846334.1\|8203105_8203360_+	plasmid stabilization protein	NA	NA	NA	NA
WP_016846333.1\|8203356_8203779_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_016846332.1\|8204630_8204963_+	hypothetical protein	NA	NA	NA	NA
WP_016846331.1\|8204946_8207736_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_157183415.1\|8208636_8209023_-	hypothetical protein	NA	NA	NA	NA
WP_016846328.1\|8209272_8210580_+	MFS transporter	Q6JIH2	Burkholderia_virus	7.0e-52	32.8
WP_125459168.1\|8211799_8212060_+	hypothetical protein	NA	NA	NA	NA
8211325:8211339	attR	NA	NA	NA	NA
WP_077231003.1\|8212838_8213015_-	carotenoid biosynthesis protein	NA	NA	NA	NA
WP_016846323.1\|8213363_8214752_-	hypothetical protein	NA	NA	NA	NA
WP_018269969.1\|8215178_8215769_-	YecA family protein	NA	NA	NA	NA
WP_157183414.1\|8217705_8218035_+	hypothetical protein	NA	NA	NA	NA
WP_050999495.1\|8220110_8220416_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_026192332.1\|8220412_8220886_-\|transposase	transposase	NA	NA	NA	NA
WP_018269964.1\|8221289_8222954_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.1e-25	31.9
WP_016846311.1\|8223496_8224114_+	hypothetical protein	NA	NA	NA	NA
WP_026192331.1\|8224293_8224866_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_016842784.1\|8224886_8225378_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_018269962.1\|8225444_8226899_-	indoleacetamide hydrolase	NA	NA	NA	NA
WP_172648473.1\|8227311_8228862_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_011084703.1\|8229868_8231380_+\|transposase	ISNCY-like element ISBj12 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

9342120 : 9409136

Thermus_phage(16.67%)

integrase,transposase

attL 9376028:9376044|attR 9411813:9411829

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172646394.1\|9342120_9343155_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.0e-14	28.9
WP_172648908.1\|9343514_9346553_+	DNA polymerase I	A0A142F1Q9	Bacillus_phage	3.4e-65	31.4
WP_026192149.1\|9346783_9347419_+	LysE family translocator	NA	NA	NA	NA
WP_016841252.1\|9347535_9348162_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_018269561.1\|9348412_9348976_+	orotate phosphoribosyltransferase	E3SNS3	Prochlorococcus_phage	6.9e-25	42.5
WP_172648909.1\|9349164_9349962_+	DUF2865 domain-containing protein	NA	NA	NA	NA
WP_016843277.1\|9349983_9350415_-	hypothetical protein	NA	NA	NA	NA
WP_172648910.1\|9350609_9350903_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_069279146.1\|9351156_9351390_-	hypothetical protein	NA	NA	NA	NA
WP_172648911.1\|9351659_9354203_+	glycogen/starch/alpha-glucan phosphorylase	A0A140XAG6	Dickeya_phage	7.5e-10	41.7
WP_172648912.1\|9354339_9355161_+	thioesterase family protein	NA	NA	NA	NA
WP_069279148.1\|9355305_9356283_+	arginase	A0A0N9R043	Chrysochromulina_ericina_virus	1.6e-24	35.7
WP_172648913.1\|9356603_9357638_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.7e-14	28.9
WP_172648914.1\|9357940_9359557_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	5.4e-147	51.6
WP_172648915.1\|9359734_9360109_-	hypothetical protein	NA	NA	NA	NA
WP_172648916.1\|9360485_9361220_-	HugZ family protein	NA	NA	NA	NA
WP_016843287.1\|9361462_9362164_+	response regulator transcription factor	NA	NA	NA	NA
WP_172648917.1\|9362274_9364083_+	sensor histidine kinase	NA	NA	NA	NA
WP_172648918.1\|9364079_9364520_+	serine kinase	NA	NA	NA	NA
WP_021076632.1\|9364734_9365136_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_016843291.1\|9365132_9365459_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_172648919.1\|9365660_9367274_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_057019506.1\|9367835_9369647_+	elongation factor 4	NA	NA	NA	NA
WP_172648920.1\|9369747_9370080_+	hypothetical protein	NA	NA	NA	NA
WP_172648921.1\|9370333_9371560_+	MFS transporter	NA	NA	NA	NA
WP_172648922.1\|9371696_9372869_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_016843298.1\|9372972_9373335_-	c-type cytochrome	NA	NA	NA	NA
WP_016843299.1\|9373527_9373692_-	hypothetical protein	NA	NA	NA	NA
WP_016843300.1\|9374001_9374304_+	hypothetical protein	NA	NA	NA	NA
WP_026192146.1\|9374574_9374886_+	c-type cytochrome	NA	NA	NA	NA
WP_172648923.1\|9375204_9377172_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-08	67.9
9376028:9376044	attL	NA	NA	NA	NA
WP_172648924.1\|9377390_9378302_-	sterol desaturase family protein	NA	NA	NA	NA
WP_172648925.1\|9378407_9379013_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_172648926.1\|9379024_9379807_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_172648927.1\|9379839_9380295_+	DUF1801 domain-containing protein	NA	NA	NA	NA
WP_172648928.1\|9380588_9382802_-	EAL domain-containing protein	NA	NA	NA	NA
WP_016843321.1\|9383155_9383536_-	L,D-transpeptidase	NA	NA	NA	NA
WP_172648929.1\|9383788_9384751_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_069279162.1\|9384880_9385390_+	hypothetical protein	NA	NA	NA	NA
WP_172648930.1\|9385580_9386381_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_172648931.1\|9386544_9387240_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_018269544.1\|9387343_9388015_+	molybdenum ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.2e-19	29.6
WP_172648932.1\|9388108_9389335_+	hypothetical protein	NA	NA	NA	NA
WP_172648933.1\|9389401_9391195_-	potassium/proton antiporter	NA	NA	NA	NA
WP_172648934.1\|9391414_9392731_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_016844429.1\|9392898_9393723_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_018269541.1\|9393811_9394531_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_026192143.1\|9394668_9395280_+	DNA repair protein RadC	NA	NA	NA	NA
WP_011090895.1\|9395437_9396679_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	1.9e-160	66.8
WP_014498593.1\|9396675_9398019_+	DUF1016 family protein	Q9JMP5	Wolbachia_phage	6.2e-112	55.5
WP_011090897.1\|9398020_9399274_+	hypothetical protein	NA	NA	NA	NA
WP_011090898.1\|9399364_9401854_-	AAA family ATPase	NA	NA	NA	NA
WP_014498594.1\|9401850_9402075_-	hypothetical protein	NA	NA	NA	NA
WP_014498595.1\|9402164_9402941_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014498596.1\|9403127_9403682_+	hypothetical protein	NA	NA	NA	NA
WP_014498597.1\|9403800_9405588_+	ATP-binding protein	NA	NA	NA	NA
WP_011085265.1\|9405628_9406738_+\|transposase	IS630-like element ISBj5 family transposase	NA	NA	NA	NA
WP_014498598.1\|9406748_9407513_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.7e-24	49.0
WP_011088795.1\|9408071_9409136_-\|transposase	IS110 family transposase	NA	NA	NA	NA
9411813:9411829	attR	NA	NA	NA	NA

DBSCAN-SWA_13

9417753 : 9481332

Vibrio_virus(12.5%)

protease,transposase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014498606.1\|9417753_9418083_+\|transposase	transposase	NA	NA	NA	NA
WP_014498607.1\|9418102_9418987_-	hypothetical protein	NA	NA	NA	NA
WP_014498608.1\|9419453_9420119_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_016846553.1\|9421233_9422307_+	hypothetical protein	NA	NA	NA	NA
WP_011090914.1\|9424781_9426113_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_011090915.1\|9426045_9426882_-	porin family protein	NA	NA	NA	NA
WP_011090916.1\|9427325_9427994_+	AAA family ATPase	A2I303	Vibrio_virus	1.5e-10	32.7
WP_011090917.1\|9427956_9428994_+	hypothetical protein	NA	NA	NA	NA
WP_011090918.1\|9428998_9429862_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	8.1e-33	37.2
WP_011090919.1\|9429861_9431361_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.8e-15	28.8
WP_011084668.1\|9431660_9432203_-	hypothetical protein	NA	NA	NA	NA
WP_014498652.1\|9433172_9433439_-	hypothetical protein	NA	NA	NA	NA
WP_011090921.1\|9433674_9434079_-	hypothetical protein	NA	NA	NA	NA
WP_011090930.1\|9437756_9438890_-	FAD-dependent oxidoreductase	A0A2K9L3K5	Tupanvirus	3.1e-08	24.4
WP_129964890.1\|9440897_9441143_-	hypothetical protein	NA	NA	NA	NA
WP_016842032.1\|9441293_9441455_-	hypothetical protein	NA	NA	NA	NA
WP_172648935.1\|9442208_9443759_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_080586187.1\|9443719_9444565_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.9e-35	35.0
WP_011090937.1\|9445852_9446614_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_162130962.1\|9447654_9447981_-	hypothetical protein	NA	NA	NA	NA
WP_011090941.1\|9448292_9448643_+	hypothetical protein	NA	NA	NA	NA
WP_011090946.1\|9450126_9451173_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_014498636.1\|9451163_9452027_-	hypothetical protein	NA	NA	NA	NA
WP_011090948.1\|9452023_9453775_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA
WP_086023025.1\|9457490_9458619_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_011090953.1\|9459023_9459380_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011090954.1\|9459376_9459775_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011084509.1\|9459931_9460276_+	hypothetical protein	NA	NA	NA	NA
WP_014497999.1\|9460800_9461022_-	hypothetical protein	NA	NA	NA	NA
WP_011084508.1\|9461591_9461849_+	WGR domain-containing protein	NA	NA	NA	NA
WP_011090955.1\|9462583_9466909_-	hypothetical protein	NA	NA	NA	NA
WP_011090956.1\|9467880_9468123_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011090957.1\|9468228_9468471_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_016846398.1\|9468467_9468707_+	hypothetical protein	NA	NA	NA	NA
WP_014498627.1\|9468710_9468953_-	hypothetical protein	NA	NA	NA	NA
WP_014498629.1\|9473737_9473995_-	hypothetical protein	NA	NA	NA	NA
WP_011090956.1\|9474062_9474305_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011090957.1\|9474410_9474653_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_016846398.1\|9474649_9474889_+	hypothetical protein	NA	NA	NA	NA
WP_014498627.1\|9474892_9475135_-	hypothetical protein	NA	NA	NA	NA
WP_011090958.1\|9476039_9476324_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_154694125.1\|9477195_9477420_+	hypothetical protein	NA	NA	NA	NA
WP_014498624.1\|9477971_9478202_+	hypothetical protein	NA	NA	NA	NA
WP_011090960.1\|9478587_9478791_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.1e-09	49.2
WP_011090961.1\|9478807_9480214_-	hypothetical protein	NA	NA	NA	NA
WP_071916953.1\|9480191_9480371_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_011090962.1\|9480374_9480827_-	hypothetical protein	NA	NA	NA	NA
WP_011090963.1\|9480841_9481057_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_011090964.1\|9481053_9481332_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP013104

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP013103

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection