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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051269 Salmonella enterica subsp. enterica serovar Typhimurium strain OLF_FSR1_WB_Finch_ST-13 chromosome, complete genome 4 crisprs DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT 0 13 9 0

Results visualization

1. NZ_CP051269
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051269_1 1560204-1560293 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051269_2 3786119-3786228 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051269_3 3977165-3978152 TypeI-E I-E
15 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP051269_4 3994284-3994557 TypeI-E I-E
4 spacers
cas3,cas8e,cse2gr11,cas7

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 NC_011802 Salmonella enterica bacteriophage SE1, complete genome 15034-15075 0 1.0
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 CP051272 Salmonella phage SW-70, complete genome 35832-35873 0 1.0
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 CP051278 Salmonella phage ST-87, complete genome 25843-25884 0 1.0
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 CP051288 Salmonella phage ST-29, complete genome 38685-38726 0 1.0
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 CP051285 Salmonella phage ST-32, complete genome 31779-31820 0 1.0
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 NC_014900 Salmonella phage ST160, complete genome 15102-15143 0 1.0
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 MW013502 Salmonella virus L cI-40 13-am43, complete genome 31672-31713 2 0.952
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 NC_004348 Enterobacteria phage ST64T, complete genome 14874-14915 2 0.952
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 MW013503 Salmonella virus L cII-101, complete genome 31673-31714 2 0.952
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 AY052766 Salmonella typhimurium bacteriophage ST64T, complete genome 14874-14915 2 0.952
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 MF188997 Salmonella phage vB_SalP_PM43, complete genome 14769-14810 2 0.952
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 NC_019715 Enterobacterial phage mEp234, complete genome 30408-30449 5 0.881
NZ_CP051269_1 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder 1560228-1560269 42 NC_019768 Enterobacteria phage HK106, complete genome 32704-32745 5 0.881
NZ_CP051269_3 3.8|3977621|28|NZ_CP051269|PILER-CR 3977621-3977648 28 NC_009927 Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence 337987-338014 5 0.821
NZ_CP051269_3 3.7|3977560|32|NZ_CP051269|CRISPRCasFinder,CRT 3977560-3977591 32 NZ_CP013929 Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence 188177-188208 7 0.781
NZ_CP051269_3 3.7|3977560|32|NZ_CP051269|CRISPRCasFinder,CRT 3977560-3977591 32 CP013931 Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence 192938-192969 7 0.781
NZ_CP051269_3 3.7|3977560|32|NZ_CP051269|CRISPRCasFinder,CRT 3977560-3977591 32 NC_019394 Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence 188204-188235 7 0.781
NZ_CP051269_3 3.20|3977847|32|NZ_CP051269|CRT,CRISPRCasFinder 3977847-3977878 32 NZ_CP024773 Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence 29048-29079 7 0.781
NZ_CP051269_3 3.20|3977847|32|NZ_CP051269|CRT,CRISPRCasFinder 3977847-3977878 32 NZ_CP041075 Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence 142294-142325 7 0.781
NZ_CP051269_4 4.5|3994375|31|NZ_CP051269|PILER-CR 3994375-3994405 31 NZ_CP024054 Escherichia coli strain SMN197SH3 plasmid pO177B3, complete sequence 15154-15184 7 0.774
NZ_CP051269_4 4.5|3994375|31|NZ_CP051269|PILER-CR 3994375-3994405 31 NZ_LT985239 Escherichia coli strain 692 genome assembly, plasmid: RCS29_pII 22706-22736 7 0.774
NZ_CP051269_4 4.5|3994375|31|NZ_CP051269|PILER-CR 3994375-3994405 31 NZ_CP010194 Escherichia coli strain M8 plasmid C, complete genome 9191-9221 7 0.774
NZ_CP051269_4 4.5|3994375|31|NZ_CP051269|PILER-CR 3994375-3994405 31 NZ_CP044405 Escherichia coli strain NMBU-W10C18 plasmid pNMBU-W10C18_03, complete sequence 23070-23100 7 0.774
NZ_CP051269_4 4.5|3994375|31|NZ_CP051269|PILER-CR 3994375-3994405 31 NZ_CP024616 Escherichia coli strain SMN152SH1 plasmid pO177B1, complete sequence 19844-19874 7 0.774
NZ_CP051269_4 4.5|3994375|31|NZ_CP051269|PILER-CR 3994375-3994405 31 NZ_CP023675 Escherichia coli strain SMN013SH2 plasmid pO177B2, complete sequence 8068-8098 7 0.774
NZ_CP051269_4 4.5|3994375|31|NZ_CP051269|PILER-CR 3994375-3994405 31 NZ_CP047611 Escherichia coli strain NMBU_ W06E18 plasmid pNMBU_W06E18_Str1_2, complete sequence 8718-8748 7 0.774
NZ_CP051269_3 3.2|3977255|32|NZ_CP051269|CRISPRCasFinder,CRT,PILER-CR 3977255-3977286 32 MN855803 Bacteriophage sp. isolate 108, partial genome 10057-10088 8 0.75
NZ_CP051269_3 3.6|3977499|32|NZ_CP051269|CRISPRCasFinder,CRT 3977499-3977530 32 NZ_CP016489 Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence 8862-8893 8 0.75
NZ_CP051269_3 3.6|3977499|32|NZ_CP051269|CRISPRCasFinder,CRT 3977499-3977530 32 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 151600-151631 8 0.75
NZ_CP051269_3 3.12|3977861|33|NZ_CP051269|PILER-CR 3977861-3977893 33 NZ_CP041075 Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence 142293-142325 8 0.758
NZ_CP051269_3 3.12|3977861|33|NZ_CP051269|PILER-CR 3977861-3977893 33 NZ_CP024773 Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence 29048-29080 8 0.758
NZ_CP051269_3 3.19|3977786|32|NZ_CP051269|CRT,CRISPRCasFinder 3977786-3977817 32 NZ_CP016179 Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence 203354-203385 8 0.75
NZ_CP051269_3 3.1|3977194|32|NZ_CP051269|CRISPRCasFinder,CRT 3977194-3977225 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
NZ_CP051269_3 3.1|3977194|32|NZ_CP051269|CRISPRCasFinder,CRT 3977194-3977225 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688
NZ_CP051269_4 4.1|3994313|32|NZ_CP051269|CRISPRCasFinder,CRT 3994313-3994344 32 NZ_CP054615 Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence 146919-146950 10 0.688
NZ_CP051269_4 4.7|3994497|31|NZ_CP051269|PILER-CR 3994497-3994527 31 NZ_CP040822 Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence 83399-83429 10 0.677
NZ_CP051269_4 4.7|3994497|31|NZ_CP051269|PILER-CR 3994497-3994527 31 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1487158-1487188 10 0.677
NZ_CP051269_4 4.7|3994497|31|NZ_CP051269|PILER-CR 3994497-3994527 31 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1885547-1885577 10 0.677
NZ_CP051269_4 4.7|3994497|31|NZ_CP051269|PILER-CR 3994497-3994527 31 NZ_HG938356 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence 56202-56232 10 0.677
NZ_CP051269_4 4.7|3994497|31|NZ_CP051269|PILER-CR 3994497-3994527 31 NZ_CP029232 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence 597700-597730 10 0.677
NZ_CP051269_4 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT 3994496-3994527 32 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1885546-1885577 11 0.656
NZ_CP051269_4 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT 3994496-3994527 32 NZ_HG938356 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence 56201-56232 11 0.656
NZ_CP051269_4 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT 3994496-3994527 32 NZ_CP040822 Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence 83399-83430 11 0.656
NZ_CP051269_4 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT 3994496-3994527 32 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1487158-1487189 11 0.656
NZ_CP051269_4 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT 3994496-3994527 32 NZ_CP029232 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence 597699-597730 11 0.656

1. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

2. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

3. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

4. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

5. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

6. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
******************************************

7. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

8. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

9. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

10. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

11. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
***************************** *******.****

12. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to NC_019715 (Enterobacterial phage mEp234, complete genome) position: , mismatch: 5, identity: 0.881

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggatctcagcggaga	Protospacer
***********************.******** *****.* .

13. spacer 1.1|1560228|42|NZ_CP051269|CRISPRCasFinder matches to NC_019768 (Enterobacteria phage HK106, complete genome) position: , mismatch: 5, identity: 0.881

gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggatctcagcggaga	Protospacer
***********************.******** *****.* .

14. spacer 3.8|3977621|28|NZ_CP051269|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  * 

15. spacer 3.7|3977560|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***  

16. spacer 3.7|3977560|32|NZ_CP051269|CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***  

17. spacer 3.7|3977560|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***  

18. spacer 3.20|3977847|32|NZ_CP051269|CRT,CRISPRCasFinder matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  * 

19. spacer 3.20|3977847|32|NZ_CP051269|CRT,CRISPRCasFinder matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  * 

20. spacer 4.5|3994375|31|NZ_CP051269|PILER-CR matches to NZ_CP024054 (Escherichia coli strain SMN197SH3 plasmid pO177B3, complete sequence) position: , mismatch: 7, identity: 0.774

ctttatcagctaaccatttccagaactcgtc	CRISPR spacer
cttctgttcctaaccatttccagaactcatc	Protospacer
***.  .  *******************.**

21. spacer 4.5|3994375|31|NZ_CP051269|PILER-CR matches to NZ_LT985239 (Escherichia coli strain 692 genome assembly, plasmid: RCS29_pII) position: , mismatch: 7, identity: 0.774

ctttatcagctaaccatttccagaactcgtc	CRISPR spacer
cttctgttcctaaccatttccagaactcatc	Protospacer
***.  .  *******************.**

22. spacer 4.5|3994375|31|NZ_CP051269|PILER-CR matches to NZ_CP010194 (Escherichia coli strain M8 plasmid C, complete genome) position: , mismatch: 7, identity: 0.774

ctttatcagctaaccatttccagaactcgtc	CRISPR spacer
cttctgttcctaaccatttccagaactcatc	Protospacer
***.  .  *******************.**

23. spacer 4.5|3994375|31|NZ_CP051269|PILER-CR matches to NZ_CP044405 (Escherichia coli strain NMBU-W10C18 plasmid pNMBU-W10C18_03, complete sequence) position: , mismatch: 7, identity: 0.774

ctttatcagctaaccatttccagaactcgtc	CRISPR spacer
cttctgttcctaaccatttccagaactcatc	Protospacer
***.  .  *******************.**

24. spacer 4.5|3994375|31|NZ_CP051269|PILER-CR matches to NZ_CP024616 (Escherichia coli strain SMN152SH1 plasmid pO177B1, complete sequence) position: , mismatch: 7, identity: 0.774

ctttatcagctaaccatttccagaactcgtc	CRISPR spacer
cttctgttcctaaccatttccagaactcatc	Protospacer
***.  .  *******************.**

25. spacer 4.5|3994375|31|NZ_CP051269|PILER-CR matches to NZ_CP023675 (Escherichia coli strain SMN013SH2 plasmid pO177B2, complete sequence) position: , mismatch: 7, identity: 0.774

ctttatcagctaaccatttccagaactcgtc	CRISPR spacer
cttctgttcctaaccatttccagaactcatc	Protospacer
***.  .  *******************.**

26. spacer 4.5|3994375|31|NZ_CP051269|PILER-CR matches to NZ_CP047611 (Escherichia coli strain NMBU_ W06E18 plasmid pNMBU_W06E18_Str1_2, complete sequence) position: , mismatch: 7, identity: 0.774

ctttatcagctaaccatttccagaactcgtc	CRISPR spacer
cttctgttcctaaccatttccagaactcatc	Protospacer
***.  .  *******************.**

27. spacer 3.2|3977255|32|NZ_CP051269|CRISPRCasFinder,CRT,PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

28. spacer 3.6|3977499|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

29. spacer 3.6|3977499|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

30. spacer 3.12|3977861|33|NZ_CP051269|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

31. spacer 3.12|3977861|33|NZ_CP051269|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

32. spacer 3.19|3977786|32|NZ_CP051269|CRT,CRISPRCasFinder matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.     

33. spacer 3.1|3977194|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

34. spacer 3.1|3977194|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

35. spacer 4.1|3994313|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********   

36. spacer 4.7|3994497|31|NZ_CP051269|PILER-CR matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 10, identity: 0.677

gtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
cagaaggttggtctggaaggcgatcgagtcg	Protospacer
  .**** ************ *****.   .

37. spacer 4.7|3994497|31|NZ_CP051269|PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 10, identity: 0.677

gtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
caaaaggttggtctggaaggcgatctcgtcg	Protospacer
  ***** ************ ****     .

38. spacer 4.7|3994497|31|NZ_CP051269|PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 10, identity: 0.677

gtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
caaaaggttggtctggaaggcgatctcgtcg	Protospacer
  ***** ************ ****     .

39. spacer 4.7|3994497|31|NZ_CP051269|PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 10, identity: 0.677

gtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
caaaaggttggtctggaaggcgatctcgtcg	Protospacer
  ***** ************ ****     .

40. spacer 4.7|3994497|31|NZ_CP051269|PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 10, identity: 0.677

gtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
caaaaggttggtctggaaggcgatctcgtcg	Protospacer
  ***** ************ ****     .

41. spacer 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

42. spacer 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

43. spacer 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccagaaggttggtctggaaggcgatcgagtcg	Protospacer
.  .**** ************ *****.   .

44. spacer 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

45. spacer 4.4|3994496|32|NZ_CP051269|CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 466284 : 516305 51 Burkholderia_phage(37.5%) tail,tRNA,plate NA
DBSCAN-SWA_2 1497517 : 1586071 109 Salmonella_phage(77.65%) protease,portal,lysis,tRNA,integrase,coat,terminase,tail,holin attL 1489820:1489836|attR 1592592:1592608
DBSCAN-SWA_3 1910441 : 1918058 6 Planktothrix_phage(16.67%) transposase,protease NA
DBSCAN-SWA_4 1968151 : 2066947 99 Salmonella_phage(41.82%) protease,portal,lysis,tRNA,terminase,tail,holin NA
DBSCAN-SWA_5 2807363 : 2863789 62 Saccharomonospora_phage(11.11%) protease,tRNA,integrase,transposase,tail attL 2851843:2851865|attR 2861558:2861580
DBSCAN-SWA_6 2939238 : 3018593 97 Salmonella_phage(85.25%) protease,portal,head,lysis,plate,integrase,terminase,transposase,holin,tail attL 2945776:2945791|attR 3020216:3020231
DBSCAN-SWA_7 3104585 : 3115091 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_8 3211977 : 3278359 59 Salmonella_phage(30.0%) lysis,holin,tail NA
DBSCAN-SWA_9 3616817 : 3722775 108 Salmonella_phage(38.71%) protease,head,lysis,tRNA,integrase,capsid,terminase,transposase,holin,tail attL 3641371:3641387|attR 3730679:3730695
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage