CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP051181	Thalassobius gelatinovorus strain NEB572 chromosome, complete genome	2 crisprs	DEDDh,csa3,WYL,cas3HD	0	4	5	0
NZ_CP051182	Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP051181_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051181_1

2426252-2426344

Orphan

Consensus_repeat	Method
GCCCATGCCGGAACAGGTCGGACAGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP051181_1

>merge|NZ_CP051181|1|2426252-2426344|CRISPRCasFinder
GCCCATGCCGGAACAGGTCGGACAGGTGCGTTCGACGGTGAAGAAGCCCTGCTGCGCCCGCACCTTGCCCATGCCGGAACAGGTCGGGCAGGT

>NZ_CP051181|1|1|2426252-2426344|CRISPRCasFinder
GCCCATGCCGGAACAGGTCGGACAGGT	GCGTTCGACGGTGAAGAAGCCCTGCTGCGCCCGCACCTT
GCCCATGCCGGAACAGGTCGGGCAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051181.1\|WP_074646740.1\|2422177_2423143_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051181.1\|WP_168370974.1\|2416360_2416498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051181.1\|WP_058262280.1\|2431548_2432790_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NZ_CP051181.1\|WP_058262290.1\|2416685_2417084_-\|8-oxo-dGTP-diphosphatase-MutT	unknown	unknown	gnl\|CDD\|239517
NZ_CP051181.1\|WP_058262288.1\|2418339_2419191_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
NZ_CP051181.1\|WP_058262428.1\|2429076_2429682_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl\|CDD\|372627
NZ_CP051181.1\|WP_058262278.1\|2433921_2435160_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NZ_CP051181.1\|WP_058262281.1\|2430707_2431505_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NZ_CP051181.1\|WP_058262430.1\|2413790_2416280_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP051181.1\|WP_058262289.1\|2417091_2418336_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NZ_CP051181.1\|WP_058262275.1\|2437930_2439355_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP051181.1\|WP_058262429.1\|2419368_2422074_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP051181.1\|WP_058262286.1\|2423165_2424725_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP051181.1\|WP_082644105.1\|2436244_2437924_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|367100
NZ_CP051181.1\|WP_058262291.1\|2413159_2413780_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|236401
NZ_CP051181.1\|WP_058262279.1\|2432930_2433821_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP051181.1\|WP_058262285.1\|2424758_2425520_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP051181.1\|WP_058262282.1\|2429749_2430571_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185098
NZ_CP051181.1\|WP_058262277.1\|2435202_2436213_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|372681
NZ_CP051181.1\|WP_058262283.1\|2426928_2428857_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715

Protein	Function_ID	Function_description	E-value
NZ_CP051181.1\|WP_058262280.1\|2431548_2432790_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	2.01685e-26
NZ_CP051181.1\|WP_058262290.1\|2416685_2417084_-\|8-oxo-dGTP-diphosphatase-MutT	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	5.88084e-57
NZ_CP051181.1\|WP_058262288.1\|2418339_2419191_-\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	3.407e-32
NZ_CP051181.1\|WP_058262428.1\|2429076_2429682_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl\|CDD\|372627	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily.	4.50693e-63
NZ_CP051181.1\|WP_058262278.1\|2433921_2435160_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	7.65768e-54
NZ_CP051181.1\|WP_058262281.1\|2430707_2431505_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	1.18137e-101
NZ_CP051181.1\|WP_058262430.1\|2413790_2416280_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP051181.1\|WP_058262289.1\|2417091_2418336_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	0
NZ_CP051181.1\|WP_058262429.1\|2419368_2422074_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP051181.1\|WP_058262286.1\|2423165_2424725_+\|OmpA-family-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.0011e-42
NZ_CP051181.1\|WP_082644105.1\|2436244_2437924_+\|glycosyl-transferase	gnl\|CDD\|367100	pfam02485, Branch, Core-2/I-Branching enzyme. This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme. I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. This is a fmmily of glycosyl-transferases that are Type II membrane proteins that are found in the endoplasmic reticulum (ER) and Golgi apparatus.	3.35113e-11
NZ_CP051181.1\|WP_058262291.1\|2413159_2413780_+\|RNA-binding-protein	gnl\|CDD\|236401	PRK09190, PRK09190, RNA-binding protein.	4.56538e-88
NZ_CP051181.1\|WP_058262279.1\|2432930_2433821_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	5.6205e-149
NZ_CP051181.1\|WP_058262285.1\|2424758_2425520_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	4.00072e-103
NZ_CP051181.1\|WP_058262282.1\|2429749_2430571_-\|hypothetical-protein	gnl\|CDD\|185098	PRK15176, PRK15176, Vi polysaccharide ABC transporter inner membrane protein VexB.	1.67374e-12
NZ_CP051181.1\|WP_058262277.1\|2435202_2436213_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|372681	pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2. Members of this family of prokaryotic proteins include putative glucosyltransferases,.	4.36569e-37
NZ_CP051181.1\|WP_058262283.1\|2426928_2428857_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0

>NZ_CP051181.1|WP_058262285.1|2424758_2425520_-|DNA-repair-protein-RadC
MSDQPAFSEKSLPLFSADDTPIMPSSSPQQPSYIADHRQRLRDRFLQGGATAIPDYEMLELVLFRAIPRRDVKPLAWRLLDTFGDFNRVVSAPIPRLLEVKGIGPAVITELKIIEAAAHRLSRARVLQRHVVSSWDDLLNYCHVTMAHRDTEQFRVLYLDRKNVMIADEEQARGTVDHVPVYPREVVKRALEHNASALILVHNHPSGDPTPSEADIVMTKQIEAAAQALGLTLHDHLIIGKSRELSFHAEGLL
>NZ_CP051181.1|WP_058262286.1|2423165_2424725_+|OmpA-family-protein
MTIARAAILAALFLFALPPIALAQDVTLMSRDGSVEISGTLLGFDGEYYRVDTIYGELTVDGSGVNCDGPACPSLTDYVAELQFSGAGSMGRVLLPALIEVFARKSGLQSEREIVDASHTRFILTDQKSGKTMGLFTLRLTNSDEGFADLLANEADIAMTLRELRPDEAALSREAGLGDMTVKGRSRVLALDALVPVVAPGNPLTRISASDLSKILSGEISNWAALGGPDAPVTLHLRNQHSGLWQAADDRLLRPVGKVVSDLALRYDSDPELVRAVERDPFGIGLTSVTGTGNAKPIALSGNCGFAMYANRKTIKTEDYPLTAPMFLYLPARRLPKLARDFLTFTRSNAAQIVIRRAGFTDQIPEEIAIDDQGARFANAIARSGEEIGLDELKRMVELLSDKTRLSLSFRFETGSARLDAHSRSNVEQLALALETGAFDTRQLLFVGFSDGDGSAVSNLAISLRRAKAVLTAVKKAAETANFEQMDLQAEAFGEAMPMACDDSAWGRKANRRVEVWLR
>NZ_CP051181.1|WP_074646740.1|2422177_2423143_+|hypothetical-protein
MANLNRIVMGVASVTAALAIGYVMQNGSNSQRQTAVIEPQRLALDDITLTVAPPTEEEAPAIFPDRPEPIRHAAATPQLDVEPIVDIPVLGVPATVCDPVMTVTPMPAAMVELELVACLPDQRVSIHHNGMMFSDVTDDQGGLTVQVPALSQIAVFIADFGNGDGAVAHTTVPDLADFERAVLQWRGAEGLHIHAMEYGAEFGQEGHIWADAPGNADQALAGQGGFLTELGNRQGPDDYRAEIYTFPSGHAARDGDIAFSVDVEVTADNCDREIGAESLQLNSDGSPLQVRELVLSMPQCDAQGGFLVLKNLLQDLNIAAN
>NZ_CP051181.1|WP_058262429.1|2419368_2422074_+|preprotein-translocase-subunit-SecA
MLGFGTLAKKVFGTPNDRKIKATRPLVEKINALEPEFEKLSDEGLIEKTTELKKRVADGESVDAILPEAFANCREAAKRALGLRAFDTQLMGGIFLHQGNISEMKTGEGKTLVATFPAYLNALSGKGVHIVTVNDYLAKRDAEWMSNVYSALGLTTGVVYPQQPEDEKKSAYACDVTYATNNELGFDYLRDNMKSELSDMNQRYHHYAIVDEVDSILIDEARTPLIISGPAQDRSDLYIAIDKLIPELSEEHFALDEKTRNVTYTDEGNEFLEATLLKAGLLPEGQSLYDPESTTLVHHVNQGLRAHKLFTRDKDYIVRDGDVVLIDEFTGRMMAGRRLSDGLHQAIEAKEGCSIQAENVTLAQVTFQNYFRLYDKLAGMTGTAATEAEEFMEIYGLGVVEVPTNRPIARLDEDDQVYRTAKEKFDAIVRTIEEAHAKQQPVLVGTTSIEKSEFLSQLLTEAGVPHSVLNARQHEKEAQIVADAGKLGAVTIATNMAGRGTDIKLGGNVEFKIMEAIEGNSEADHQAIRERIEKEHEADEQAVKEAGGLFVLATERHESRRIDNQLRGRSGRQGDPGRSSFFLSLEDDLMRIFGSERLEKVLSSLGMKEGEAIIHPWVNKSLERAQAKVEGRNFDIRKQLLKFDDVMNEQRKVIFSQRREIMEAEDLSEIAKDMRDQVIDDLVDTYIPPKSYADQWNTEGLYAAVLEKLNMDIPVIKWAEEEGVDGDVIAERLEEEADKSMAAKAEAFGADTMRQIEKQILLQTIDAKWREHLLTLEHLRSVVGFRGYAQRDPLNEYKTESFQLFESMLDGLREDVTLKLGQIRPMTEEEQQQMMQQMAAQQAAMQAPEATVPAEQDAEPAVDAAKGFDENDPSTWGNPGRNELCPCGSGKKFKHCHGRLA
>NZ_CP051181.1|WP_058262288.1|2418339_2419191_-|peptidylprolyl-isomerase
MSKRLTFLSAAALSISMALPVMAQDIPKAEDVVATVNGAEITLGHVLQIRQGLPPQYQQLPPEQLLPGILNQVIQQTLLEQSLDGKLPKSAQYELDNQRRAAMANAAIDDVLKSAVTDEALQAEYDASYADFEATPEYSAAHILVETEDAAQKLAEEARDGADFAELAKTHSTGPSAPNGGSLGWFGPGMMVPPFEDAVVAMEAGEVSDPVETQFGWHVIKLIETRNAPKPSFDEVRPQLEGNLQEKTITALLEDLTAKASIDRTAADALDPGVLSDPSILEE
>NZ_CP051181.1|WP_058262289.1|2417091_2418336_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MAGKLPVSPLAPEKFPTLPVIDGVRFAALEAGVRYSGRADVMLAELCEGTAVAGVFTRSSTRSAAVLDCQEKITEDLGGRAAILVNSGNSNAFTGHSGFDSVAKITAAVAETMSIDAKRVFTASTGVIGEPIKWERITAKIGDLNAALEAGAMENAARAIMTTDTFPKGATKTATLDGVEVKIAGFAKGSGMIAPDMATMLCYIFTDAAMSREVLQQCLWLDNASTFNCVTVDGDTSTSDTVLVAATGKADMEPITDFADPRVRIFRDALHAVMKDLAIQIARDGEGATKLIEVQVTGANANGPAHRVAMAIANSPLVKTAVAGEDPNWGRIVMAVGKAGERAERDRLTIWFGDILVAENGWVAPSYTEEAGAAYMKRDEIVIRVDLGLDNGTATVWSCDLTHGYISINADYRS
>NZ_CP051181.1|WP_058262290.1|2416685_2417084_-|8-oxo-dGTP-diphosphatase-MutT
MKTVLVSAVALIDADGRVLLAQRPSDKSMAGLWEFPGGKIEPGETPEHALIRELQEELGIDTWASCLAPLTFASHSYDSFHLLMPLFACRKWDGIPHPKEGQSLKWVHARDLCDYPMPPADIPLIPILRDWL
>NZ_CP051181.1|WP_168370974.1|2416360_2416498_-|hypothetical-protein
MLRTIVIGNYVSVQGTFVRGLPDGKILVRVGDREFAGHPVSQKAA
>NZ_CP051181.1|WP_058262430.1|2413790_2416280_+|translation-initiation-factor-IF-2
MSDNDGKKTLGVRGGPRSGNVKQSFSHGRTKNVVVETKRKRVVVPKPGAAKSGAGKSGQTAGDPSRRPAGISDAEMERRMKALQAAKAREVEEAATRVAEEKAREEERMRRREEAEAKEREEREREQALKARAEEEARKKQEAEDAAKRAAAAAAAPPAEEKGPARTQKAAPAGAAPNRKKEREEDRTRSKARDDGRRSGKLTVNQALSGREGGRTKSLAAMKRKQERARQKAMGAPVEREKVVRDVRVPETIVVSELANRMAERVADVVKSLMKMGMMVTQNQPIDADTAELIVEEFGHRIQRVSDSDVEDVIQHVEEDEGDLKPRPPVITIMGHVDHGKTSLLDAIRNAKVVSGEAGGITQHIGAYQVETESGSTLTFLDTPGHAAFTSMRSRGAQVTDIVVLVVAADDSVMPQTIEAINHAKAAKVPMIVAINKCDKPAADPNKVRAELLQHEVIVEAMSGEVQDVEVSAVTGQGLDELLESIALQAEILELHANPDRAAEGAVIEAQLDIGRGPVATVLVQKGTLKQGDIFVVGEQWGRVRALVDDKGERVSEAGPSVPVEVLGLNGTPEAGDVLNVVSTEAQAREIAEYRESAAKDKRAAAGAATTLDQLMQKAKEDESVKELPILVKADVQGSAEAIVQAMEKIGNEEVRVRVLHYGVGAITETDVGLAEASGAPIMGFNVRANASARNSANQKGVEIRYYSVIYDLVDDVKAAASGLLSAEIREHFIGYAQIKEVFKVSGVGKVAGCLVTEGVARRSAGVRLLRDDVVIHEGNLKTLKRFKDEVKEVQSGQECGMAFENYDDIRPGDVIEIFEREEVERNLD
>NZ_CP051181.1|WP_058262291.1|2413159_2413780_+|RNA-binding-protein
MTRGGRNKNREDGSERKCIATGEVQPKFGLIRFVVGPDGQIVPDLMEKLPARGIWVSADRAALDKAVKKGLFARAAKQQVTVPDDLSDLVEQALVRRVVDLISLARKGGEAVAGFEKVKDWLVKDYAEVLIQASDGSGRGKSKLHTPDGGSFIGWLTADELGQSFGRQTVIHVALGAGGLTQRVVEEAARLKGMRALGGDDDRRKG
>NZ_CP051181.1|WP_058262283.1|2426928_2428857_-|molecular-chaperone-DnaK
MSKVIGIDLGTTNSCVSIMDGSQPKVIENSEGARTTPSIVAFTDDERLVGQAAKRQAVTNASNTIFGVKRLIGRRFDDEHLAKDKKNLPFAVVDGGNGDAWVEAKSEKYSPSQISAFILGKMKETAESYLGEEVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKETHTIAVYDLGGGTFDVTILEIDDGLFEVKSTNGDTFLGGEDFDMRIVSYLASEFKKEHGVDLTKDKMALQRLKEAAEKAKIELSSSQQTEINQPFISMDPNGGQPLHMVMKLTRAKLESLVSDLIKASIKPCQAALKDAGLTTSDIDEVVLVGGMTRMPRVVEEVTKFFGKEPHKGVNPDEVVAMGAAIQAGVLQGDVKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTAEDHQSAVTIRVFQGEREMAADNKMLGQFNLEDIPPAPRGLPQIEVTFDIDANGIVSVSAKDKGTGKEQNITIQASGGLSDDEIDQMVKDAETNAEADKDRKEMVEARNQAESLIHSTEKSMEEHADKVDPTTVEAIELAIAALKDDLEKDDITADKIKSGIQNVTESAMKLGEAIYKASQDEGEDAPADVDSDASGGAADDDIVDADFEDLDDDKRA
>NZ_CP051181.1|WP_058262428.1|2429076_2429682_+|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MTGCMTIRGFQIYPERLYLTAQQAILQDLRHVIRQAPMFSPQTPYGKPMSVRMTSAGRVGWISDRQGYRYAPQHPDGGAWPAIPETVLGLWRDLIGMDRDPDCCLINFYGEGARMGMHQDRDEADFSWPVLSVSLGDEGLFRIGNQTRGGKTESIWLRSGGVVVMGGPARLTYHGIDRIRFGSSSLLAKGGRINVTCRVVD
>NZ_CP051181.1|WP_058262282.1|2429749_2430571_-|hypothetical-protein
MFYKPRKESGISAAFTIAELIYHSIARKIRKTHSHAVMSIVVNLLQMVIFVLAFYIMFSLLGLRSAAVRGDFLLYLMSGIFLYMTHSKTLGAVVGSEGPTSPMMLHAPMNTIIAILSSALSALYIQVLSLSLILFVYYVGFKHFVIEDPAGAFGMLLLAWFAGLAIGMVLLALKPWFPTAVNMITLVYQRANMIASGKMFLANSLPTFMLNMFDWNPLFHCIDQARGFTFINYVPRNSSITYPLIISLSFLMIGLMGEFYARKNTSISLSARR
>NZ_CP051181.1|WP_058262281.1|2430707_2431505_+|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MDYEKLTQVMRRLSLVAGDKIMEIYNSDEFEVKLKSDDSPVTEADEAADALISEGLRTAFPDVVLVTEEQAASHSMKADTFLIVDPLDGTKEFVHRRGDFTVNIAYVENGVPTRGVVYAPAKNRMFFTLANGQSVEETGALSKDVIGETLPIKVSQADNDALLVVASKSHRDQATDDYINKYKVADSKSAGSSLKFCLVATGEADLYPRVGRTMEWDTAAGHAVLHGAGGMVVRFDDHSPLIYGKDGYANPFFIAYSPSVELKEA
>NZ_CP051181.1|WP_058262280.1|2431548_2432790_+|glycosyltransferase-family-2-protein
MTAPSVSVVVVSRHRPEALEYCLTSLSRLIYPNYEIIVVTDPSGEAAIHGMGLTGRVRVVPFDIANISIARNRGIEAAAGDIVAFIDDDAVAEPLWLLHLAAAFHDPEVSIAGGFVRGRNGISFQWKARSIDCTGMAIPLQLNETCNTVLSPPPDQAVKTEGTNMAVRRQVLLEQGGFDPAYRFYLDETDLNMRLAVAGYKTVIVPLAQVHHAYAPSTRRRRNRSVTDLYDIGASSMIFLRLHCPEALHVTRIAAVRQEQRERLLIQMRDGLLEPSEVRWALKRLEQGLTEAAEMVLPQLQPLHCTTPAFLRFESSANGDHIELAGRIWQKSELCKQAAHLAEQGKTVSVFIFSHTGLFHSVQYCKPGFWLQRGGLFGRSDRGQKLFRLDLFRTRVQAETRRTAEIRWDCTKY
>NZ_CP051181.1|WP_058262279.1|2432930_2433821_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MRTKVTKAIFPVAGLGTRFLPATKSVPKEIMTLVDRPLIQYAIDEARAAGIKEFIFVTSRGKSALEDYFDHSHQLESELRKKGKTELLEALKETNMDSGEIAYVRQHKALGLGHAVWCARRLIHNEPFAVILPDDVIAAEKPCLQQMIEAYAETGGSMVAAMEVPPEKASAYGVLDVKEDMGSVVSVNNMVEKPAPGEAPSNLAVIGRYILSPNVLKTLNKKETGTGGEIQLTDAIAKEIEGDGVYGFRFRGQRFDCGSKAGFLQATVSFGLSRDDLKDELMAYLQEVIAVDKAAQ
>NZ_CP051181.1|WP_058262278.1|2433921_2435160_+|glycosyltransferase-family-4-protein
MSVTDPPVRVLDITRLLRRAGRVATGIDRVEAAYLDHLLQDDVPLYGLARTSLGYALLDRQGMEGFRARVAGEIPWGPPDMLSQASRRLGLDQKQAQADLRRLSVKRCLPQRLGRMLMRQLPAGVAYFNVGHSNLTDRVLHALKRLLKARVAVMIHDTIPLDFPQYQRLGSVDPFERMLERVRRNADLILCNSHQTQVDVERHMAPNGAVPDCAVLPLGVDIAAPKSMQMPEGFEKNRPYFVMLGTIEPRKNHALMLDIWDEMSEDVQPPQLLICGNRGWNNESVFARLDDWAGRGGPVFELQGLNDGQVARLLQRSAGLLFPSHAEGYGLPPLEALALGAPVLCADLPVCHELLGENAVYADVNDRYAWQRNITMLATCWQADKRASHSQMARFVLPSWEAHFNKVFKLAL
>NZ_CP051181.1|WP_058262277.1|2435202_2436213_+|glycosyltransferase-family-2-protein
MGVWQAYRLRVKRKRFLIRALRKRRELKPVVNRTDQIKPGDILLFSTQRNEQIRLPYFLQYYRDMGVNHFLIVDNDSNDGSVSYLSDQPDVSVWHTRNSYKRSRFGVDWLNWLQRKYGHGHWTLVVDPDEFLVYPFCDTRPLRALTDWLDASSIKSFSAMLMDMYPKGRIDQQPYRAGQDPLEIANWFDSGNYTIERNWKFGNLWIQGGPRSRVFFADAPEKAPALNKVPLVKWDKKYVYTSSTHMLLPRGLNLVYDEWGGEKASGALLHTKFLDTFHIKAEEELQRKQHYSASVEYVAYAGTLNDNPDLWCKWSEKYINWRQLEILGLMSKGNWA
>NZ_CP051181.1|WP_082644105.1|2436244_2437924_+|glycosyl-transferase
MLVHTALGRAEQVARHWAAAGCPVVIHVDRNVDRRTYTTFRKALSDLPDVRFSSRHRCEWGTWGIVAASQSASELMLAEFPDVRHVYLSSGSCLPLRPVKELIDYLADRPRTDFIESATTADVPWTVGGLDAERFTLSFPFAWKQQRMLFDNWVNIQRRFGLKRKMPNGIVPHMGSQWWCLTRQTLSAILQDPDRELYDRFFKRVWIPDESYFQSLSRLYSSNIESRSLTLSKFDFQGKPHIFYDDHLQLLRRSDCFVARKIWPHANRLYEAFLTDPAGTMKGAEPNPGKIDRIFAKAVERRTRGRPGLYMQSRFPHEGWENGVTSGQYSVFEGFSDLFEDFDRWLAKATSARVHGHLFAKDRVEYADGQTVMNGALSDSALHRDYNSQAFLTSLIWNARGERQCFQFGPNDVQDIDWLFAKDPNAQVSVISGAWAVPLFKSNRNFADLRKEAALLQKIEAEHLNVLRSPYSKARIRIWTMAEFIENPMEPLQTIIDEIGNRSMRRLSEAPKMADLTGFGQFLQNLKNQGMHPYLMGDFAVERDLSNGKRPKRKPYLVR
>NZ_CP051181.1|WP_058262275.1|2437930_2439355_+|hypothetical-protein
MNDRFDYFIVFAEMRTGSNFLEANLNAFPKLVCHGEAFNPHFIGYPNSTEILGISQEMREKDPARLIGTIKQHSDGLGGFRYFHDHDPRVLDLCLADPRCAKIVLTRNPVDSYVSWKIAQATGQWKLTNVKKRKDSKAHFDRDDFENHLADLQAFQVLLLNELQKTGQTAFYVAYEDLQDLDVMNGLARWLGQTDQLESLDGKLKKQNPEPISEKVENFAEMEKALAHLDQFNLTRTPNFEPRRNAVVPSYVAAAKTRLLYLPIRSGPETSVFNWLAALDSVSENDLKSRFSQKSLRDWKKDNTGFRSFTVLRHPVARAHAAFCEKILSTGPGSFSKIRKTIAKNFNLPLPDEVDDRYDAEIHRTCFIGFLDFLKANLAGQTGVRVDASWASQVQVLQGFADLTPPDFILREDELDIMLPFIASRAGRSDAPVPAIVNDPVPVPLDAIYDDEIESLVNGIYNKDYVSFGFGAWR

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Crispr_ID: NZ_CP051181_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP051181_2

3758993-3759457

Orphan

Consensus_repeat	Method
GTCAGGCGCGGCGATCCCCAGGGAGGAGGAGAGGAGACCGCCGCTCTTGACAA	PILER-CR
CCCAGGGAGGAGGAGAGG	CRT

9 spacers

The CRISPR arrays of NZ_CP051181_2

>merge|NZ_CP051181|2|3758993-3759457|PILER-CR,CRT
CGGCGATGCCCAGGGAGGAGGAGAGGACATCGCCGTCTTTGTTCCGGTGACCTTAGGGAGGAGGAAAGGTCACCGTATCTGGCGTCAGGCGCGGCGATCCCCAGGGAGGAGGAGAGGAGACCGCCGCTCTTGACAACGATCAGGACCTAGGGAGGAGGAGAAGGCCCCGTCGTATTCTGTGGTGTCAGGCGCGGCGATCCCCAGGGAGGAGGAGAGGAGACCGCCGCTCTTGACAACGATCAGGACCTAGGGAGGAGGAGAAGGTCCCGTCGTATTCTGTAGCGTCAGGCGCGGCGATCCCCAGGGAGGAGGAGAGGGGACCGCCACTCTTGACAACGAAACCTCAGGGAGGAGGAGAGAGGTTTCGCATCTGGTTGGACCATTTGGTCCGAATTAGGTGCGACGACATCAGGGAGGAGGAAGATGTCGCCGCCGTTTAACAGAAGCCCCAGGGAGGAGGAGAGG

>NZ_CP051181|2|1|3758993-3759228|PILER-CR
CGGCGATGCCCAGGGAGGAGGAGAGGACATCGCCGTCTTTGTTCCGGTGACCT	TAGGGAGGAGGAAAGGTCACCGTATCTGGCGTCAGGCGCGGCGATCCC
CAGGGAGGAGGAGAGGAGACCGCCGCTCTTGACAACGATCAGGACCTAGGGAG	GAGGAGAAGGCCCCGTCGTATTCTGTGGTGTCAGGCGCGGCGATCCC
CAGGGAGGAGGAGAGGAGACCGCCGCTCTTGACAA

>NZ_CP051181|2|1|3759001-3759457|CRT
CCCAGGGAGGAGGAGAGG	ACATCGCCGTCTTTGTTCCGGTGAC
CTTAGGGAGGAGGAAAGG	TCACCGTATCTGGCGTCAGGCGCGGCGATC
CCCAGGGAGGAGGAGAGG	AGACCGCCGCTCTTGACAACGATCAGGA
CCTAGGGAGGAGGAGAAG	GCCCCGTCGTATTCTGTGGTGTCAGGCGCGGCGATC
CCCAGGGAGGAGGAGAGG	AGACCGCCGCTCTTGACAACGATCAGGA
CCTAGGGAGGAGGAGAAG	GTCCCGTCGTATTCTGTAGCGTCAGGCGCGGCGATC
CCCAGGGAGGAGGAGAGG	GGACCGCCACTCTTGACAACGAAAC
CTCAGGGAGGAGGAGAGA	GGTTTCGCATCTGGTTGGACCATTTGGTCCGAATTAGGTGCGACGAC
ATCAGGGAGGAGGAAGAT	GTCGCCGCCGTTTAACAGAAGC
CCCAGGGAGGAGGAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP051181.1\|WP_058261712.1\|3760001_3761072_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP051181.1\|WP_058261708.1\|3750426_3751224_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP051181.1\|WP_058261706.1\|3747841_3748330_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP051181.1\|WP_058261705.1\|3744518_3746828_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP051181.1\|WP_058261716.1\|3767769_3769266_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NZ_CP051181.1\|WP_058261713.1\|3764629_3765619_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NZ_CP051181.1\|WP_058261711.1\|3759475_3759694_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|368980
NZ_CP051181.1\|WP_058261733.1\|3761195_3763223_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP051181.1\|WP_058261707.1\|3749365_3750271_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176132
NZ_CP051181.1\|WP_058261709.1\|3751405_3754843_-\|pyruvate-carboxylase	unknown	unknown	gnl\|CDD\|237263
NZ_CP051181.1\|WP_058261730.1\|3746793_3747858_+\|DUF2235-domain-containing-protein	unknown	unknown	gnl\|CDD\|370774
NZ_CP051181.1\|WP_058261718.1\|3770708_3771791_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP051181.1\|WP_058261710.1\|3756383_3758804_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NZ_CP051181.1\|WP_058261717.1\|3769262_3770705_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|184501
NZ_CP051181.1\|WP_058261715.1\|3765966_3767751_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP051181.1\|WP_074647060.1\|3764122_3764626_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|234728
NZ_CP051181.1\|WP_058261714.1\|3765622_3765970_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227749
NZ_CP051181.1\|WP_058261704.1\|3743325_3744456_+\|type-III-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143482
NZ_CP051181.1\|WP_058261731.1\|3748401_3749268_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	unknown	unknown	gnl\|CDD\|273212
NZ_CP051181.1\|WP_058261732.1\|3755056_3756187_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451

Protein	Function_ID	Function_description	E-value
NZ_CP051181.1\|WP_058261712.1\|3760001_3761072_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	8.33303e-139
NZ_CP051181.1\|WP_058261708.1\|3750426_3751224_+\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	1.01297e-108
NZ_CP051181.1\|WP_058261706.1\|3747841_3748330_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	4.48306e-29
NZ_CP051181.1\|WP_058261705.1\|3744518_3746828_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP051181.1\|WP_058261716.1\|3767769_3769266_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NZ_CP051181.1\|WP_058261713.1\|3764629_3765619_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	5.48244e-148
NZ_CP051181.1\|WP_058261711.1\|3759475_3759694_-\|DUF1127-domain-containing-protein	gnl\|CDD\|368980	pfam06568, DUF1127, Domain of unknown function (DUF1127). This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.	7.49196e-05
NZ_CP051181.1\|WP_058261733.1\|3761195_3763223_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.53507e-120
NZ_CP051181.1\|WP_058261707.1\|3749365_3750271_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176132	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mechanisms. In Escherichia coli and Salmonella enterica serovar Typhimurium, MetJ and MetR regulate the expression of methionine biosynthetic genes. The MetJ repressor negatively regulates the E. coli met genes, except for metH. Several of these genes are also under the positive control of MetR with homocysteine as a co-inducer. In Bacillus subtilis, the met genes are controlled by S-box termination-antitermination system. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.82525e-108
NZ_CP051181.1\|WP_058261709.1\|3751405_3754843_-\|pyruvate-carboxylase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	0
NZ_CP051181.1\|WP_058261730.1\|3746793_3747858_+\|DUF2235-domain-containing-protein	gnl\|CDD\|370774	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235). This domain, found in various hypothetical bacterial proteins, has no known function.	1.81422e-75
NZ_CP051181.1\|WP_058261718.1\|3770708_3771791_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	0
NZ_CP051181.1\|WP_058261710.1\|3756383_3758804_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP051181.1\|WP_058261717.1\|3769262_3770705_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|184501	PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional.	1.59993e-153
NZ_CP051181.1\|WP_058261715.1\|3765966_3767751_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	1.18983e-134
NZ_CP051181.1\|WP_074647060.1\|3764122_3764626_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	5.6482e-38
NZ_CP051181.1\|WP_058261714.1\|3765622_3765970_+\|hypothetical-protein	gnl\|CDD\|227749	COG5462, COG5462, Predicted secreted (periplasmic) protein [Function unknown].	8.28348e-06
NZ_CP051181.1\|WP_058261704.1\|3743325_3744456_+\|type-III-PLP-dependent-enzyme	gnl\|CDD\|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	4.32863e-120
NZ_CP051181.1\|WP_058261731.1\|3748401_3749268_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	9.73379e-119
NZ_CP051181.1\|WP_058261732.1\|3755056_3756187_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	1.35367e-154

>NZ_CP051181.1|WP_058261710.1|3756383_3758804_+|UvrD-helicase-domain-containing-protein
MSSFDENDAFEGASLSARAIAARPAPYLDELNPAQRAAVEALDGPVLMLAGAGTGKTKALTARIVHLLNTGRAQPNEILSVTFTNKAAREMKDRVGRMLGQAVEGMPWLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQLIAANNIDDKRWPARQLAGIIDHWKNRAWTPAQVPGSEAGAFNNRGTELYDQYQTRLRELNAVDFGDLLLHVVTIFQTHEDVLAQYRRWFKYILVDEYQDTNVAQYLWLRLLAGEHKNICCVGDDDQSIYGWRGAEVGNILRFEADFPGAQVVRLEQNYRSTPHILAAASGVIAGNEDRLGKTLWTEAESGEKLRLIGHWDGEEEARWIGEEIEALQRGTRRLPPFDLDQIAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLESRDAMAYFRVVVSPDDDLAFERIVNTPKRGLGDKAQQTIQGIARANGVSLVDGARIALANGDIKGKGGAALRQLVDDLARWHDLTRGPLLAFDEDDTAVIDDGPAPQPRFGDPDLNHVELAQIILDESGYTAMWQNDKSPEAPGRLENLKELVKALEQFDNLSGFLEHVALIMDNAQGDDGAKVSIMTLHAAKGLEFPVVFLPGWEDGLFPSQRSMDETGLKGLEEERRLAYVGITRAEQLCTISFAGNRRVFGQWQSQLPSRFIDELPEDHVEVLTPPGLYGGGYGAASPMQSGLETRASEANVYNSPGWKRMQDRSSARPQSQSRESRNTVIDLKAVSAYTVGDRVFHQKFGYGAVLGIEGDKLEIDFDKAGIKKVVARFITGADDVPF
>NZ_CP051181.1|WP_058261732.1|3755056_3756187_-|alpha-hydroxy-acid-oxidizing-protein
MNLHKKYPGLSDLKAQARRRMPWFVFEYLDSATGTEKTQARNRQKLDEIVLMPSILHGETEPDLSVDLFGQRLALPFGISPVGMSGLFWPDAERILAQAATRHGMPYGLSTVASRTPEDVAECVNGNGWFQIYPPRDPEIRADMLQRARAAGFSTLVLTVDVPVASRRERQVRSGLTSPPRLTPRLLTQVARCPAWAMGMARLGMPRMRLIDSYASNVTGLGSTQHAGYLLRTSPDWDYLKALRDGWNGPLVVKGVLDPRDVAPLEAAGVDGIWVSNHAGRQFDAAPASIEALPAIRAETRLPVIFDSGVEGGLDICRAIALGADFVMLGRAWHFALGALGTKGPDHLVDMLRQDLVANLGQMGVTRLTDLPGRLA
>NZ_CP051181.1|WP_058261709.1|3751405_3754843_-|pyruvate-carboxylase
MAEFNKILIANRGEIAIRVMRAANELGKKTVAVYAEEDKLGLHRFKADEAYRIGEGMGPVAAYLSIDEIIRVAKLSGADAIHPGYGLLSENPDFVDACEAAGIAFIGPKAATMRALGDKASARRVAIEAGVPVIPATEVLGDDMEAIKAEAATVGYPLMLKASWGGGGRGMRPILGPDELAEKVMEGRREAEAAFGNGEGYLEKMIIRARHVEVQILGDSHGAIYHLWERDCSVQRRNQKVVERAPAPYLSQEQREEICELGRRICAHVNYECAGTVEFLMDMDSGKFYFIEVNPRVQVEHTVTEEVTGIDIVQAQIKIAEGKPLAEATGMARQEDIVLHGHALQTRITTEDPQNNFIPDYGRITAYRSATGMGIRLDGGTAYAGGVITRYYDSLLVKVTAWAPTPEAAIHRMDRALREFRIRGVSTNIAFVENLLKHPTFLNNEYTTKFIDETPGLFEFSKRRDRGTKVLTYIADITVNGHPETEGRAKPEEIRVPKPPVSADAVLAGSKTLLEQNGAKAVADWMLEQKQLLLTDTTMRDGHQSLLATRMRSIDMIRVAPVYAANLPQLFSVECWGGATFDVAYRFLQECPWQRLRDLRAAMPNLLTQMLLRASNGVGYTNYPDNVVREFVRQAAETGIDVFRVFDSLNWVENMRVAMDAVIESGKICEGTICYTGDILDPNRAKYDLKYYVAMAKDLEAAGAHVLGLKDMAGLLKPAAARVLVKALKDELTIPVHFHTHDTSGIAGATILAAADAGVDAADAAMDAFSGGTSQACLGSIIEALRNTDRETGIDIARIREISNYWEQVRAQYVAFESGLQAPASEVYLHEMPGGQFTNLKAQARSLGLEERWHEVAQTYADVNRMFGDIVKVTPSSKVVGDMALMMVSQNLTRAEVEDPDKEVAFPDSVIDMMRGNLGQPPNGFPDAIVKKVLKDEAPNTERPGKHLPPVDLEEKRTEISAALDGIAIDNEDLNGYLMYPKVFTDYMGRHEIYGPVRSLPTTTFFYGMEPGEEIEAEIDPGKTLEIRLQAVGETSEDGEVKVFFELNGQPRVIRVPNRLIKSSTQARPKAELGNPAHVGAPMPGVVASVGVSVGQKVSEGDLLLTIEAMKMETGIHAERDAVIKAVHVLPGGQIDAKDLLIEFE
>NZ_CP051181.1|WP_058261708.1|3750426_3751224_+|inositol-monophosphatase
MQGSANLNIMLKAARKAGRSLVKDFREVENLQVSMKGAGDFVSKADIAAEAIIKEELMGARPTYGWLGEEGGEEPGQDPTRRWIVDPLDGTTNFLHGLPHWAISIALEHKGQIVSGVIYDPAKDEMFYAEKGAGAWMNDSNRLRVSGRHRMIEAIFATGIPFAGKRTLPATLQDLARIMPECAGVRRWGSAALDLAYVAAGRYDGFWERELNIWDIAAGTLIVAEAGGMVGAIRDGHEPLQDGDIVTANGALFEKFAGLVRARGA
>NZ_CP051181.1|WP_058261707.1|3749365_3750271_+|LysR-family-transcriptional-regulator
MHIEMRHLRTIKAIHDSGGLARAADQLNITQSALSHQIKHLEEQTGVELFVRRSKPMKLTAAGIRLLRAAEKILPEMAALEEQFKGILSGKTGRLHIAIECHACFEWLFPVLEQFRKAWPEVDVDIRAGLAFDALPALQREEVDLVISSDPDKLPGVEFVPLFDYSPVFVASSAHPLAQKDFIEAEDFAAETLITYPVDRNRLDIFTELLTPAGVEPAALRPVELTAVILLLVASNRGVTVLPDWVVREVKYSSDYVTRPITEKGLTKRLYAAVRTDDATRPYFAHFIRLARTEPVKLQRQ
>NZ_CP051181.1|WP_058261731.1|3748401_3749268_-|methylenetetrahydrofolate-reductase-[NAD(P)H]
MTVPAVSFEFFPPQNLEASFRLWDTVQALAPLGPRFVSVTYGAGGTTRDLTRDAVATIHKHSGLKVAAHLTCVDATRAETLSIADGFAEAGVSDIVALRGDPPKGTGAFQAHEDGFASSVELIEALAAKDKFTIRVGAYPEKHPESADHQADIEWLKRKFDAGADEALTQFFFEAETFFRFRDACEKAGIDKPIIPGILPIENFKGTRNFAKRCGTLVPDWVTDAFEKAERDGRHDLLATALCTELCSDLIEGGVDSLHFYTLNRPELTRDVCHALGVTPQARLENVA
>NZ_CP051181.1|WP_058261706.1|3747841_3748330_-|PaaI-family-thioesterase
MAERKIATSPDDLPSKEEMLNISGLEAMQRMLRGETAGPPIAGTLGYAISEVTDGRVVFSGAPDFNVTNPMGTVHGGWYGTLLDSCMACAVMTKVPKGSTYTTLEYKINILRPIPLGMKIEAVGTAQHVGRSTGIAIGEIRGVEDGKLYATGSTTCIVMKLR
>NZ_CP051181.1|WP_058261730.1|3746793_3747858_+|DUF2235-domain-containing-protein
MQLGRLTKRLIEWVKPGFWSGHSPVSAPRGALTHVIILDGTMSTLEPGAETNAGLTYRLLAQMGAPISVYYEAGVQMVEWRHAPDVLMGRGINRQIRRAYGYLASRYRPGDRVFLFGYSRGAYAVRSLGGVIDQVGLLRPRSATERNIQLAYRHYQSAPGSPACAAFRAAHCHDEFKIEMIGVWDTVKALGWRLPILWRWTEEKHSFHSHDLGGSVKYGFHALAKDETRAVFEPVLWDSSDTDADRIEQVWFRGAHGDVGGQLGDFQAARPLSNIPLVWMLERAQDCGLPLPEGWHRLFPCDPEAPSVGTWRGWGKMFLLRKRRFVGADPSERLHETVQADLRDVPLPKSSAIS
>NZ_CP051181.1|WP_058261705.1|3744518_3746828_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MEKFGKSQPIKRVEDVRFLTGHGAYIDDAAPQDALRAVVFRSPVAHAVITSLDVSAARDSDGVHMVLTADDLAQAGITKGLTAVTVQNRDGSPAAAPYRPVLAQGKLRFAGEPVAVVVAETLDQARDAAELIELDYDDLPAKLDMYPGGEALHEEAPDNRAFDWGLGDEAACSAAFDRAAKVVRMEIVDSRIIVNSMEPRGCFADWRDQRLHFAFGGQGVWAVKGALANTLSLDADQVHVTTPDVGGGFGMKAPAYPEYFAVAHAAMVLNRPVRWMGERSDAMLSDHHGRDLVSDAALAFDENNRIIGYRVDTRCNLGAYNSNFGQLMQTNLFARVLAGTYDVQATYLHSEGFYTNTTQVDAYRGAGRPEAIYVLERMMDQAARELGVDPWDLRRINFIPKNAFPYKAATGETYDVGDFNRVLGAAETFADRAGFQRRRAESEARGKLRGIGLSYYIESILGDPSEGAKVEFNADGTVTIYVGTQSNGQGHETVYAKFLSDQTGIPQDRIFVVQGDSDLIAQGGGTGGSRSVTTQANATLATVDKMIAAFTPYLADKMGVSEDDLRFDDETFRAPGSNLTPTLLEAAEMARVDGRQDLLMHEARATLPARSYPNGAHVAEVEIDPDTGDVELAKYTVVDDFGNLINPLLAEGQVHGGVAQGAGQVLMERVVYDDDGQLLSGSFMDYAMPRAADLPMIGFTTEAVPSTSNPMGMKGCGEAGTVGAMASTMNAVLDALWQRGVRRIDMPATPVNVWEALRHAAGKADETAN
>NZ_CP051181.1|WP_058261704.1|3743325_3744456_+|type-III-PLP-dependent-enzyme
MRPEPHWLSPRQHLQRIQPDAAVMYFSPVTLQQQACRFLDGFPGLVSYAVKANPDEAVLVNLVAAGITVFDVASPVEMAAVRAVCPDAVLHYNNPVRSPAEVAAAAKFGIASASVDCPRELDKLAVLGRDLEISVRLALPVKGAAYDFGAKFGVGPDLAVALLRQVAARGYRPALTFHPGTQCDAPEAWEAYISAAADVASRAGVTLDRLNVGGGFAAHRAGPAPDLNRIFGRIGQAAAAAFDRVPHLVCEPGRAMVAEAFSLATRVKAVRADGSVFLNDGIYGALSELRDMGGLDRLRCVAPNGEARTGRPVSRILFGPTCDSLDRLPDPIALPDDLQEGDYVLFDGMGAYSLALATRFNGYGPTHSVTVASLCG
>NZ_CP051181.1|WP_058261711.1|3759475_3759694_-|DUF1127-domain-containing-protein
MATASDIRTEHSGIVDRAAGFFTEVGARYARYKTYRATLNELTALGDRDLRDMGLCRAQLRSVAWEHAYDGH
>NZ_CP051181.1|WP_058261712.1|3760001_3761072_+|Mrp/NBP35-family-ATP-binding-protein
MAVTRADVETALERIEIPGGGNLISRDMVRALHIEDGKVRFVIEAPSPDAARAMEPLRAAAERCVAALAGVSSVSVALTAHGPSEQKPAPSLKVGGHPKPQAEPLKPAGVDRILVVGSGKGGVGKSTVSSNLAVALAKQGRKVGLLDADIYGPSQPRMMGVSKRPASPDGKTIEPLHAHGVTLMSIGLMMDPDKAVVWRGPMLMGALQQMLGQVNWGELDVLIVDLPPGTGDVQLTLCQRAVLTGAIIVSTPQDVALLDARKAIDMFNTLKTPILGMIENMSSFHCPNCGHETHIFGHGGVAAEAEKLGVPLLAQLPIDLETRLAGDGGAPVATGEGPVAEAYAQLADRLVKGGMA
>NZ_CP051181.1|WP_058261733.1|3761195_3763223_-|DEAD/DEAH-box-helicase
MTLPSVLPAALAEALTARGYETLTPVQQEMIRDDLTENDLLVSAQTGSGKTVGFGLALAPTLLQGEDRLPHAAAPIALIIAPTRELALQVRREFEWLYAPTGAVLASCVGGMDMRTERRALERGAHIVVGTPGRLRDHIQRGGIDLSAIRAVVLDEADEMLDLGFAEDLEFILGSAPETRRTLMFSATVPREIERLSKNFMREDAVRVKTTSATPQHSDIDYRAFTVSPASSEGAVINALRFYDSENAIVFCNTRAMVNRLTARLSNRGFQVVALSGELSQSERTHALQSMRDGRARVCVATDVAARGIDLPKLDLVVHAELPTGSETLLHRSGRTGRAGRKGVSALIVPHRSQNKAERLLRFAKVNAEWGPPPSADDVRGKDRERMLADPVWTDPAPETQADFIETLTETFSPEQLAKAYLALYETRHSAPEDLDLSMAKPEKRDRTPFGPSAWISLSIGHDAKAEARWLLPMLLRSGGIEKDSIGAIRIQDQQTFVEMKAPARDTFMTRIGADATLEQGIQVTVLASAPELGARSAPRPPQSKRVWDKPEGGAPKSKPYKKREDGAKPDGFKKRDDFKKRDDYKKRDDAVHSAAGPRKDKFKPKDGGPDSTDKPRAKKKWDKPAPDGKAPRKSAASKYKAGASKTSERMGKPKPRHKSAGPDRGPNATPKRRK
>NZ_CP051181.1|WP_074647060.1|3764122_3764626_+|division/cell-wall-cluster-transcriptional-repressor-MraZ
MGLSFRGEFDQKVDGKGRMSIPASFRRVLEDGDPDFPQSPSPRIVVLYGPHLKGCLHAYTIDAMAEIEADIEALPRGSKQRKYASQMILGKSWETEIDRDGRIVLPKERREQIGLEGVATMAARGDYFEIWNADTYTAEEDADLNEFLAEQDDDFDPLSLLDGAKGA
>NZ_CP051181.1|WP_058261713.1|3764629_3765619_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MTETVPSPDDAPHIPVLLRPLIKAVSPVSGVWLDGTFGAGGYSRALLEAGADKVIGVDRDPLALELAAPWAGQYGDRLELVQGVFSRLDEYGSDLDGVVLDLGVSSMQLDLAERGFSFMKEGPLDMRMSQEGRSAADIVNDASESDLADILFHYGEERASRRIARAILRERDLEPITTTLRLAKIIESCLPRSKPGQSHPATRSFQALRIAVNDEYGELIGGLEAAERALKPGGQLAVVTFHSIEDRMVKRFLQQRSGSGGRTNRYAPEQEEVATQFSLKSRKAIGPDDQELAENPRSRSAKLRVGIRTDAAAGPCDRKGLGMPMLRGT
>NZ_CP051181.1|WP_058261714.1|3765622_3765970_+|hypothetical-protein
MRSFFYIVTALIVIGLAFWAYQENYKTQAALDRTEDLQTAIGQARSRLATLKAEWAYLNRPDRLRELADINYDRLGLLPLAPEQFGKTDQIAYPALNSNFVITDPVDVSSSEELQ
>NZ_CP051181.1|WP_058261715.1|3765966_3767751_+|penicillin-binding-protein-2
MIRTPLRPLARILDARSKGENPDAIERENIRLRHEEMRDRARQRAESRLLVLGLFFLCAFSAVGLRMAALSATEPTEPRASAAGAAIVAQRADIIDRQGRILATNLETYALYAQPTEMIDPEHSATELARIFPELNRETLLEDFTGKRKFLWIRKKLSPEQKQAVHDIGDPGLMFGPREMRLYPNGHLAAHVLGGAGFGREGVHAAEVIGVAGVERRFDDLLRDPANEGKALQLSLDLSVQAATERVLSGGMKLMNAKGAAAILMDVHSGEILSLVSLPDFDPNDRPRPPTQGHAVDSPLFNRAVQGVYELGSTFKIFAAAQAMELGLANPSTMVDIRGPLRWGKFKIRDFHNYGKELSLTKIIVKSSNIGTARMAQQIGVERQKDFLRNLGLFEATPVELTEAGGGKPLLPKNWSELSTMTISYGHGLSATPMHLAAAYAAIANGGTKVNPTLLKQDKTQTGPRVMSAQTARAARLMLRKVVSEGTASFGEVPGYAVGGKTGTADKPKENGGGYYDDRVIATFASMFPAHDPKYVLVVTLDEPSENSGDKPRRTAGWTAVPVAAEMIRRVAPLLGLRPEIEPDTLADITLTSN
>NZ_CP051181.1|WP_058261716.1|3767769_3769266_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MAEQGKSRGKSLGELGLTAQGGRNPFIAGLAVDSREVRKGFLFAALPGTKIHGATFVETALDRGADAILTDAEGAQIAADALARNDAALIIAVDPRQTLAYTAALWFGAQPKTMVAVTGTNGKTSVATFARHIWSELGFEAVNLGTTGVEGAFQAPLHHTTPEPITLHRMLSDCAAAGVTHAAMEASSHGLAQRRLDGVHLCAAGFTNFTQDHLDYHATFDDYFQAKAGLFSRVLPDDGVAVVNIDDPRGQDIAALAAERGQRVIRVGRLPLADLQLQAQRFDATTQEIRFRFQDQVYLVRLPLIGGFQADNVLLAAGLVIAAGADPDRVFETLPHLGTVRGRMQLAATRANGATVFVDYAHTPDAVKTALKALRPHVIGRLVAVIGAGGDRDRTKRPLMGQAAADNADLVIVTDDNPRSEDPAAIRTDVLMGCPDAIEVGDRAEAILRGVDALGPGDALLIAGKGHESGQIIGENTYPFDDVEQASVAVAALDGGMA
>NZ_CP051181.1|WP_058261717.1|3769262_3770705_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MMLWTAEEAASATGGRITADWQASGVSIDTRTLQPGDLFVALQAARDGHDFVAQALNNGAAAAVVTHVPEGVAEDAPLLIVPDVLSALEDLGRAARARSKAKVIAVTGSVGKTSTKEMLRMVLSGQGKTHAAEASYNNHWGVPLTLARMPRDTRFAVIEIGMNHAGEIAPLARMARPHVAMITTVAAAHLEAFDSIDAIAREKATIFDGLEPGGVAVINGDLSVTPILAAAARAREARILSFGEAPHNHHRLTEVTLVDDVTVATGRRWRQPVLYKIMAAGRHFAVNAMGVLAVIHALRLDPTMAATDLARWVPPAGRGLRERIQFDPVTEDQAIDLIDDAFNANPTSMAAALEVLAAARPKDGIGRVAKGRRVAILGDMLELGPDEIVMHQALADLPFVAQIDVIHCVGPRMNRLWAQLPPGKRGEWAENAGKLADRAHRLIDAGDVVLVKGSKGSKVSKVVDAIRKLGHAAPQSEQGA
>NZ_CP051181.1|WP_058261718.1|3770708_3771791_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYWLTGLSDGGDFFNLFRYITFRSGGAFMTALIFGFIFGRPLINVLRKRQGKGQPIRDDGPEGHFVKAGTPTMGGLLIVGALLTSTILWARLDNPFVWLVLFVTIAFGAIGFADDYAKVSKQNTKGVPGKLRLLLGFVIAGIAGYWATCYHPEALQYRLALPVFKDTLINLGLIFIPFAMIVIVGAANAVNLTDGLDGLAIMPVMIAATALGIIAYAVGRVDFTEYLDVHYVPGTGEILIFVAGLVGGGLGFLWYNAPPAAVFMGDTGSLALGGALGAIAVATKHEIVLAIVGGLFVVEALSVIIQVLYFKRTGKRVFLMAPIHHHYEKKGWAEPQIVIRFWIISLILAMIGLATLKVR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP051181_2	2.9\|3759310\|25\|NZ_CP051181\|CRT	3759310-3759334	25	MF893340	Pseudomonas phage PPSC2, complete genome	64659-64683	4	0.84
NZ_CP051181_2	2.5\|3759110\|28\|NZ_CP051181\|CRT	3759110-3759137	28	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	220256-220283	5	0.821
NZ_CP051181_2	2.7\|3759210\|28\|NZ_CP051181\|CRT	3759210-3759237	28	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	220256-220283	5	0.821
NZ_CP051181_2	2.5\|3759110\|28\|NZ_CP051181\|CRT	3759110-3759137	28	NZ_CP007214	Burkholderia plantarii strain ATCC 43733 plasmid bpln_1p, complete sequence	101807-101834	6	0.786
NZ_CP051181_2	2.5\|3759110\|28\|NZ_CP051181\|CRT	3759110-3759137	28	NZ_CP035903	Burkholderia glumae strain 257sh-1 plasmid plas2, complete sequence	69338-69365	6	0.786
NZ_CP051181_2	2.5\|3759110\|28\|NZ_CP051181\|CRT	3759110-3759137	28	NZ_CP052865	Burkholderia glumae strain HN1 plasmid pBGHN1-1, complete sequence	108226-108253	6	0.786
NZ_CP051181_2	2.7\|3759210\|28\|NZ_CP051181\|CRT	3759210-3759237	28	NZ_CP007214	Burkholderia plantarii strain ATCC 43733 plasmid bpln_1p, complete sequence	101807-101834	6	0.786
NZ_CP051181_2	2.7\|3759210\|28\|NZ_CP051181\|CRT	3759210-3759237	28	NZ_CP035903	Burkholderia glumae strain 257sh-1 plasmid plas2, complete sequence	69338-69365	6	0.786
NZ_CP051181_2	2.7\|3759210\|28\|NZ_CP051181\|CRT	3759210-3759237	28	NZ_CP052865	Burkholderia glumae strain HN1 plasmid pBGHN1-1, complete sequence	108226-108253	6	0.786
NZ_CP051181_2	2.4\|3759062\|30\|NZ_CP051181\|CRT	3759062-3759091	30	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	808370-808399	7	0.767
NZ_CP051181_2	2.5\|3759110\|28\|NZ_CP051181\|CRT	3759110-3759137	28	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	630400-630427	7	0.75
NZ_CP051181_2	2.7\|3759210\|28\|NZ_CP051181\|CRT	3759210-3759237	28	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	630400-630427	7	0.75
NZ_CP051181_2	2.4\|3759062\|30\|NZ_CP051181\|CRT	3759062-3759091	30	NZ_CP018222	Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL1, complete sequence	91772-91801	8	0.733
NZ_CP051181_2	2.4\|3759062\|30\|NZ_CP051181\|CRT	3759062-3759091	30	NZ_CP044330	Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence	71068-71097	8	0.733
NZ_CP051181_2	2.4\|3759062\|30\|NZ_CP051181\|CRT	3759062-3759091	30	NZ_CP034088	Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence	112606-112635	8	0.733
NZ_CP051181_2	2.4\|3759062\|30\|NZ_CP051181\|CRT	3759062-3759091	30	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	936686-936715	9	0.7

1. spacer 2.9|3759310|25|NZ_CP051181|CRT matches to MF893340 (Pseudomonas phage PPSC2, complete genome) position: , mismatch: 4, identity: 0.84

ggaccgccactcttgacaacgaaac	CRISPR spacer
tcaccgccactattgacaacgaacc	Protospacer
  ********* *********** *

2. spacer 2.5|3759110|28|NZ_CP051181|CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 5, identity: 0.821

agaccgccgctcttgacaacgatcagga	CRISPR spacer
agctggccgctcatgacaacgatcaaga	Protospacer
** . ******* ************.**

3. spacer 2.7|3759210|28|NZ_CP051181|CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 5, identity: 0.821

agaccgccgctcttgacaacgatcagga	CRISPR spacer
agctggccgctcatgacaacgatcaaga	Protospacer
** . ******* ************.**

4. spacer 2.5|3759110|28|NZ_CP051181|CRT matches to NZ_CP007214 (Burkholderia plantarii strain ATCC 43733 plasmid bpln_1p, complete sequence) position: , mismatch: 6, identity: 0.786

agaccgccgctcttgacaacgatcagga	CRISPR spacer
agaccgctgctcgtgacaacgatgcgcg	Protospacer
*******.**** **********  * .

5. spacer 2.5|3759110|28|NZ_CP051181|CRT matches to NZ_CP035903 (Burkholderia glumae strain 257sh-1 plasmid plas2, complete sequence) position: , mismatch: 6, identity: 0.786

agaccgccgctcttgacaacgatcagga	CRISPR spacer
agaccgctgctcgtgacaacgatgcgcg	Protospacer
*******.**** **********  * .

6. spacer 2.5|3759110|28|NZ_CP051181|CRT matches to NZ_CP052865 (Burkholderia glumae strain HN1 plasmid pBGHN1-1, complete sequence) position: , mismatch: 6, identity: 0.786

agaccgccgctcttgacaacgatcagga	CRISPR spacer
agaccgctgctcgtgacaacgatgcgcg	Protospacer
*******.**** **********  * .

7. spacer 2.7|3759210|28|NZ_CP051181|CRT matches to NZ_CP007214 (Burkholderia plantarii strain ATCC 43733 plasmid bpln_1p, complete sequence) position: , mismatch: 6, identity: 0.786

agaccgccgctcttgacaacgatcagga	CRISPR spacer
agaccgctgctcgtgacaacgatgcgcg	Protospacer
*******.**** **********  * .

8. spacer 2.7|3759210|28|NZ_CP051181|CRT matches to NZ_CP035903 (Burkholderia glumae strain 257sh-1 plasmid plas2, complete sequence) position: , mismatch: 6, identity: 0.786

agaccgccgctcttgacaacgatcagga	CRISPR spacer
agaccgctgctcgtgacaacgatgcgcg	Protospacer
*******.**** **********  * .

9. spacer 2.7|3759210|28|NZ_CP051181|CRT matches to NZ_CP052865 (Burkholderia glumae strain HN1 plasmid pBGHN1-1, complete sequence) position: , mismatch: 6, identity: 0.786

agaccgccgctcttgacaacgatcagga	CRISPR spacer
agaccgctgctcgtgacaacgatgcgcg	Protospacer
*******.**** **********  * .

10. spacer 2.4|3759062|30|NZ_CP051181|CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 7, identity: 0.767

tcaccgtatctggcgtcaggcgcggcgatc	CRISPR spacer
cgggcgcttctggcgtcaggcgcgccgatc	Protospacer
. . **. **************** *****

11. spacer 2.5|3759110|28|NZ_CP051181|CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 7, identity: 0.75

agaccgccgctcttgacaacgatcagga	CRISPR spacer
cacccgccgctcctgacgacgatcagtt	Protospacer
 . *********.****.********

12. spacer 2.7|3759210|28|NZ_CP051181|CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 7, identity: 0.75

agaccgccgctcttgacaacgatcagga	CRISPR spacer
cacccgccgctcctgacgacgatcagtt	Protospacer
 . *********.****.********

13. spacer 2.4|3759062|30|NZ_CP051181|CRT matches to NZ_CP018222 (Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL1, complete sequence) position: , mismatch: 8, identity: 0.733

tcaccgtatctggcgtcaggcgcggcgatc	CRISPR spacer
attacgtctctggcgtcaagcgcggcgact	Protospacer
 .  *** **********.*********..

14. spacer 2.4|3759062|30|NZ_CP051181|CRT matches to NZ_CP044330 (Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tcaccgtatctggcgtcaggcgcggcgatc	CRISPR spacer
aggcgcaatctggcgtcaggatcggcgatc	Protospacer
  .*   *************  ********

15. spacer 2.4|3759062|30|NZ_CP051181|CRT matches to NZ_CP034088 (Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence) position: , mismatch: 8, identity: 0.733

tcaccgtatctggcgtcaggcgcggcgatc	CRISPR spacer
aggcgcaatctggcgtcaggatcggcgatc	Protospacer
  .*   *************  ********

16. spacer 2.4|3759062|30|NZ_CP051181|CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.7

tcaccgtatctggcgtcaggcgcggcgatc	CRISPR spacer
gagatgctgctggcgtcaggcgcgccgatc	Protospacer
  . .*.  *************** *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

60787 : 106538

Emiliania_huxleyi_virus(14.29%)

terminase,protease,capsid,integrase,portal,tRNA

attL 63134:63149|attR 105854:105869

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139193633.1\|60787_61669_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_058264349.1\|61808_62558_+	UMP kinase	NA	NA	NA	NA
WP_058264350.1\|62621_63185_+	ribosome recycling factor	NA	NA	NA	NA
63134:63149	attL	NA	NA	NA	NA
WP_058264351.1\|63198_63924_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	5.6e-19	40.0
WP_058264352.1\|63920_64709_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_058264353.1\|64705_65875_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_058264354.1\|65897_67241_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_139193634.1\|67708_69985_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_058264356.1\|69984_70560_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_058264357.1\|70637_71108_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_058264358.1\|71112_71898_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_058264359.1\|71902_72709_+	UDP-2,3-diacylglucosamine diphosphatase LpxI	NA	NA	NA	NA
WP_058264474.1\|72708_73878_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_058264360.1\|73903_74524_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_058264361.1\|74716_75463_+	RNA methyltransferase	NA	NA	NA	NA
WP_058264362.1\|75538_76681_+	COX15/CtaA family protein	NA	NA	NA	NA
WP_058264363.1\|76682_78158_+	carboxypeptidase M32	NA	NA	NA	NA
WP_058264364.1\|78219_78684_+	MAPEG family protein	NA	NA	NA	NA
WP_058264365.1\|78730_79426_-	hypothetical protein	NA	NA	NA	NA
WP_058264366.1\|79547_82304_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.6e-93	30.6
WP_139193626.1\|82508_83306_+	hypothetical protein	NA	NA	NA	NA
WP_058264368.1\|83399_84020_-	MarC family protein	NA	NA	NA	NA
WP_058264369.1\|84126_85986_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	4.9e-75	33.5
WP_058264370.1\|86114_87308_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_058264371.1\|87403_87826_+	nucleoside-diphosphate kinase	NA	NA	NA	NA
WP_058264372.1\|87945_88350_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_058264373.1\|88466_88823_-	competence protein TfoX	NA	NA	NA	NA
WP_058264374.1\|89189_90815_-	long-chain-fatty-acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.9e-27	27.3
WP_058264475.1\|91218_92283_-\|integrase	tyrosine-type recombinase/integrase	G8DH71	Emiliania_huxleyi_virus	6.2e-99	52.8
WP_158509099.1\|92297_92474_-	hypothetical protein	NA	NA	NA	NA
WP_058264476.1\|92543_92819_-	DUF2312 domain-containing protein	A0A1X9HX62	Ruegeria_phage	2.8e-35	86.7
WP_058264375.1\|92907_93183_-	hypothetical protein	NA	NA	NA	NA
WP_058264376.1\|93179_93869_-	hypothetical protein	A0A0U2BXK1	Paracoccus_phage	6.2e-76	60.0
WP_058264377.1\|93865_94135_-	hypothetical protein	NA	NA	NA	NA
WP_139193627.1\|94131_94452_-	hypothetical protein	NA	NA	NA	NA
WP_158509100.1\|94451_94622_-	hypothetical protein	NA	NA	NA	NA
WP_058264379.1\|94842_95136_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082644204.1\|95451_96450_-	hypothetical protein	A0A0R6PHP9	Moraxella_phage	1.5e-46	39.1
WP_058264382.1\|96607_97048_+	hypothetical protein	NA	NA	NA	NA
WP_058264383.1\|97044_97296_+	hypothetical protein	NA	NA	NA	NA
WP_058264384.1\|97399_97822_+	hypothetical protein	NA	NA	NA	NA
WP_139193628.1\|97818_98004_+	hypothetical protein	NA	NA	NA	NA
WP_139193629.1\|98003_98645_+	hypothetical protein	NA	NA	NA	NA
WP_058264386.1\|98847_99441_+	hypothetical protein	NA	NA	NA	NA
WP_058264387.1\|99443_100124_+	hypothetical protein	G8DGC1	Emiliania_huxleyi_virus	6.2e-28	36.3
WP_058264388.1\|100231_100630_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	1.6e-23	48.7
WP_058264389.1\|100763_101216_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_058264390.1\|101202_102870_+\|terminase	terminase	A0A1W6JP18	Morganella_phage	3.0e-84	36.0
WP_058264391.1\|102866_104144_+\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	1.6e-21	25.4
WP_058264392.1\|104140_105109_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	8.0e-13	33.3
WP_058264393.1\|105218_106538_+\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	2.0e-59	39.3
105854:105869	attR	NA	NA	NA	NA

DBSCAN-SWA_2

109792 : 120314

Vibrio_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058264401.1\|109792_115210_+	hypothetical protein	I6S2X0	Marinomonas_phage	6.5e-19	36.1
WP_058264402.1\|115216_116122_+	hypothetical protein	A0A2I7RGN7	Vibrio_phage	1.7e-12	25.6
WP_058264403.1\|116121_116916_+	hypothetical protein	A0A0F7L460	uncultured_marine_virus	1.1e-20	40.7
WP_074646956.1\|116927_117290_+	hypothetical protein	A0A0A0YUD8	Pseudomonas_phage	1.3e-08	35.7
WP_058264405.1\|117286_117697_+	DUF4376 domain-containing protein	A0A1X9SGR5	Bradyrhizobium_phage	5.1e-09	37.1
WP_058264406.1\|117764_118094_+	hypothetical protein	A0A191VYU4	Roseobacter_phage	3.9e-36	70.0
WP_058264407.1\|118222_118951_+	hypothetical protein	A0A0S1WEN4	Vibrio_phage	1.6e-18	32.4
WP_058264408.1\|118952_119327_+	bacteriophage spanin2 family protein	NA	NA	NA	NA
WP_058264477.1\|119507_120314_+	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	2.4e-87	60.3

DBSCAN-SWA_3

618353 : 668712

Paracoccus_phage(26.67%)

protease,head,capsid,portal,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058261185.1\|618353_619412_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_058261186.1\|619408_622687_-	hypothetical protein	NA	NA	NA	NA
WP_058261187.1\|622791_623250_+	peroxiredoxin	NA	NA	NA	NA
WP_058261290.1\|623267_624074_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_058261188.1\|624248_625586_+	peptidoglycan DD-metalloendopeptidase family protein	S5M424	Bacillus_phage	3.6e-19	40.9
WP_058261189.1\|625575_626085_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_058261190.1\|626170_626755_-	HNH endonuclease	A0A223W0A5	Agrobacterium_phage	1.1e-33	43.8
WP_058261191.1\|627294_627960_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_058261192.1\|627956_628586_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_058261193.1\|628582_629311_-	cobalt-precorrin-6A reductase	NA	NA	NA	NA
WP_058261194.1\|629307_630360_-	cobalt-precorrin-5B (C(1))-methyltransferase	NA	NA	NA	NA
WP_058261195.1\|630447_631299_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_058261196.1\|631295_632564_+	cobyrinate a,c-diamide synthase	NA	NA	NA	NA
WP_058261197.1\|632675_633893_+	MFS transporter	NA	NA	NA	NA
WP_058261198.1\|633997_634777_-	squalene/phytoene synthase family protein	NA	NA	NA	NA
WP_058261199.1\|634766_635741_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_058261200.1\|635737_637357_-	citramalate synthase	NA	NA	NA	NA
WP_058261201.1\|637487_638975_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	9.7e-42	35.3
WP_058261202.1\|639242_640427_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_139193595.1\|640497_641025_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	4.3e-37	54.2
WP_058261203.1\|641053_641566_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	8.8e-43	57.5
WP_058261204.1\|641690_642893_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_058261205.1\|643053_643947_+	fructose bisphosphate aldolase	NA	NA	NA	NA
WP_058261206.1\|644117_645290_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_058261292.1\|645481_645988_+	N-acetyltransferase	NA	NA	NA	NA
WP_058261207.1\|646004_647618_-	DNA alkylation response protein	NA	NA	NA	NA
WP_058261208.1\|647854_648154_+	septum formation initiator family protein	NA	NA	NA	NA
WP_058261209.1\|648344_649346_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_058261210.1\|649363_650722_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
WP_058261211.1\|650734_652030_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_058261212.1\|652096_652594_-	DUF1772 domain-containing protein	NA	NA	NA	NA
WP_058261213.1\|652976_653825_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_058261214.1\|653918_654158_+	hypothetical protein	NA	NA	NA	NA
WP_058261215.1\|654158_654965_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_058261216.1\|655098_659016_-	host specificity protein	A0A0B5A7K5	Paracoccus_phage	1.9e-230	39.3
WP_058261217.1\|659015_659465_-	peptidase	F4YXU4	Roseobacter_phage	4.4e-30	46.4
WP_139193589.1\|659461_660349_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	9.8e-58	42.5
WP_058261219.1\|660345_660978_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	2.0e-57	48.1
WP_058261220.1\|660988_661648_-\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	1.1e-13	33.7
WP_058261221.1\|661640_661844_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_058261222.1\|661840_662167_-	gene transfer agent family protein	NA	NA	NA	NA
WP_058261223.1\|662168_662585_-\|tail	phage major tail protein, TP901-1 family	A0A1J0GVL1	Pseudoalteromonas_phage	7.7e-05	30.4
WP_058261224.1\|662611_663019_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_058261225.1\|663015_663342_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_058261226.1\|663338_663938_-	hypothetical protein	NA	NA	NA	NA
WP_058261227.1\|664087_665263_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	1.9e-61	41.7
WP_058261228.1\|665299_665842_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.5e-32	49.7
WP_058261229.1\|665852_666077_-	hypothetical protein	NA	NA	NA	NA
WP_058261230.1\|666066_667254_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.4e-62	38.3
WP_058261293.1\|667368_668712_-	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	2.7e-75	39.1

DBSCAN-SWA_4

1158282 : 1212945

Staphylococcus_phage(28.57%)

protease,integrase,tRNA

attL 1200807:1200824|attR 1210757:1210774

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058262735.1\|1158282_1159161_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_058262736.1\|1159160_1160303_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_058262737.1\|1160379_1161741_-	glutathione-disulfide reductase	NA	NA	NA	NA
WP_058262738.1\|1161874_1162663_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_168370965.1\|1162753_1163773_-	hypothetical protein	NA	NA	NA	NA
WP_058262740.1\|1164017_1165391_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_058262741.1\|1165454_1166351_+	DMT family transporter	NA	NA	NA	NA
WP_058262742.1\|1166313_1167000_-	thiamine diphosphokinase	NA	NA	NA	NA
WP_074647096.1\|1167138_1169196_+	hypothetical protein	NA	NA	NA	NA
WP_139193677.1\|1169251_1170175_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	8.2e-15	29.4
WP_058262744.1\|1170212_1170815_-	heme NO-binding domain-containing protein	NA	NA	NA	NA
WP_058262795.1\|1171075_1171774_-	HAD family hydrolase	NA	NA	NA	NA
WP_058262745.1\|1171883_1172339_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_058262746.1\|1172347_1172632_-	DUF3572 domain-containing protein	NA	NA	NA	NA
WP_058262747.1\|1172749_1174138_+	diguanylate cyclase	NA	NA	NA	NA
WP_074647098.1\|1174118_1174649_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_058262749.1\|1174668_1175034_-	hypothetical protein	NA	NA	NA	NA
WP_058262750.1\|1175026_1175611_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_058262751.1\|1175742_1176273_-	hypothetical protein	NA	NA	NA	NA
WP_058262752.1\|1176539_1176923_+	DUF983 domain-containing protein	NA	NA	NA	NA
WP_058262753.1\|1176945_1177653_+	NUDIX hydrolase	NA	NA	NA	NA
WP_058262754.1\|1177615_1178515_-	DMT family transporter	NA	NA	NA	NA
WP_058262755.1\|1178593_1179637_-	aldo/keto reductase	NA	NA	NA	NA
WP_058262756.1\|1179719_1180151_-	hypothetical protein	NA	NA	NA	NA
WP_058262757.1\|1180320_1182090_+\|tRNA	methionine--tRNA ligase	A0A2K9KZR3	Tupanvirus	7.4e-89	34.3
WP_058262758.1\|1182396_1183932_+	acetolactate synthase large subunit	NA	NA	NA	NA
WP_058262759.1\|1183987_1184503_-	hypothetical protein	NA	NA	NA	NA
WP_058262760.1\|1184570_1186070_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_058262761.1\|1186126_1187683_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_058262762.1\|1187842_1188619_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.8e-21	31.6
WP_058262763.1\|1188740_1190171_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_058262764.1\|1190175_1191117_+	alpha-E domain-containing protein	NA	NA	NA	NA
WP_058262765.1\|1191122_1191938_+	transglutaminase family protein	NA	NA	NA	NA
WP_058262766.1\|1191976_1192762_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_058262767.1\|1192821_1193250_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_058262768.1\|1193412_1194702_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_139193675.1\|1194940_1197304_-	transketolase	NA	NA	NA	NA
WP_058262770.1\|1197345_1198548_-	methionine gamma-lyase	A0A0B5JD48	Pandoravirus	1.0e-17	27.8
WP_058262771.1\|1198659_1199112_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
1200807:1200824	attL	NA	NA	NA	NA
WP_058262773.1\|1200915_1203789_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_058262774.1\|1203807_1205001_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	2.4e-22	26.2
WP_058262775.1\|1204997_1206554_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.1e-160	58.2
WP_058262776.1\|1206616_1207642_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_058262777.1\|1207694_1208120_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_074647093.1\|1208112_1208319_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_058262778.1\|1208459_1209380_-	hypothetical protein	NA	NA	NA	NA
WP_058262779.1\|1209406_1210594_-\|integrase	tyrosine-type recombinase/integrase	Q8W6M6	Sinorhizobium_phage	5.3e-67	38.4
WP_058262780.1\|1211315_1211702_-	hypothetical protein	NA	NA	NA	NA
1210757:1210774	attR	NA	NA	NA	NA
WP_058262796.1\|1211830_1212187_-	GFA family protein	NA	NA	NA	NA
WP_058262781.1\|1212198_1212945_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_5

2948398 : 2989398

Thiobacimonas_phage(40.0%)

transposase,integrase

attL 2965257:2965271|attR 2993694:2993708

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058263995.1\|2948398_2949214_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.2e-20	33.6
WP_058263996.1\|2949254_2949755_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_058264176.1\|2950205_2950652_-	hypothetical protein	NA	NA	NA	NA
WP_058263997.1\|2950711_2951650_-	hypothetical protein	NA	NA	NA	NA
WP_058263998.1\|2951770_2952574_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	3.7e-88	63.4
WP_058263999.1\|2952570_2953494_-	DNA cytosine methyltransferase	A0A0F7L3T9	uncultured_marine_virus	5.8e-37	36.5
WP_158509089.1\|2953441_2953645_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_058264000.1\|2953789_2954107_-	hypothetical protein	A0SMR0	Pseudomonas_virus	6.2e-15	46.5
WP_058264001.1\|2954117_2955332_-	hypothetical protein	G8DH61	Emiliania_huxleyi_virus	1.7e-52	38.3
WP_058264002.1\|2955328_2955721_-	hypothetical protein	H2BCU0	Synechococcus_phage	1.7e-06	44.6
WP_058264003.1\|2955720_2960181_-	hypothetical protein	G8DH58	Emiliania_huxleyi_virus	7.4e-154	36.2
WP_058264004.1\|2960180_2960585_-	hypothetical protein	A0A0U2C0Z1	Paracoccus_phage	1.7e-36	58.6
WP_058264005.1\|2960589_2961237_-	hypothetical protein	A0A0U2C133	Paracoccus_phage	3.4e-44	49.7
WP_058264006.1\|2961240_2961900_-	hypothetical protein	NA	NA	NA	NA
WP_058264007.1\|2961899_2964254_-	hypothetical protein	A0A1B0T6D4	Thiobacimonas_phage	5.9e-17	30.4
WP_074646832.1\|2964250_2964520_-	hypothetical protein	NA	NA	NA	NA
WP_058264008.1\|2964615_2964945_-	hypothetical protein	NA	NA	NA	NA
WP_058264009.1\|2964955_2965885_-	hypothetical protein	A0A1B0T6E1	Thiobacimonas_phage	1.4e-78	49.3
2965257:2965271	attL	NA	NA	NA	NA
WP_158509090.1\|2965888_2966056_-	hypothetical protein	NA	NA	NA	NA
WP_058264010.1\|2966052_2966481_-	hypothetical protein	A0A1B0T6E9	Thiobacimonas_phage	3.7e-26	44.0
WP_058264011.1\|2966480_2966909_-	DUF1320 domain-containing protein	G8GWF0	Rhodobacter_phage	2.9e-15	39.6
WP_058264012.1\|2967022_2967313_-	hypothetical protein	NA	NA	NA	NA
WP_058264013.1\|2967324_2968218_-	hypothetical protein	M4SRT6	Rhodobacter_phage	2.5e-130	74.4
WP_058264014.1\|2968666_2969749_-	hypothetical protein	A0A1B0T6E7	Thiobacimonas_phage	4.0e-61	38.6
WP_058264015.1\|2969852_2970335_-	phage virion morphogenesis protein	A0A1B0T6E8	Thiobacimonas_phage	1.6e-30	46.5
WP_082644172.1\|2970681_2971866_-	virion morphogenesis protein	A0A1B0T6H8	Thiobacimonas_phage	6.4e-97	69.9
WP_058264016.1\|2971825_2973469_-	DUF935 domain-containing protein	A0A1B0T6F2	Thiobacimonas_phage	1.0e-185	60.1
WP_058264017.1\|2975407_2975887_+	hypothetical protein	NA	NA	NA	NA
WP_058264018.1\|2975901_2976198_-	hypothetical protein	A0A1B0T6F5	Thiobacimonas_phage	3.6e-25	54.6
WP_058264019.1\|2976194_2976761_-	DUF3486 family protein	A0A1B0T6G0	Thiobacimonas_phage	1.5e-48	68.0
WP_058264020.1\|2976764_2977064_-	hypothetical protein	A0A1B0T6F4	Thiobacimonas_phage	1.6e-33	68.0
WP_082644186.1\|2977060_2977279_-	DUF2730 family protein	A0A1B0T6F6	Thiobacimonas_phage	3.3e-07	37.5
WP_058264021.1\|2977404_2977938_-	hypothetical protein	M4SRV1	Rhodobacter_phage	6.3e-36	51.8
WP_058264022.1\|2977937_2978867_-	glycoside hydrolase family protein	G8GWD3	Rhodobacter_phage	2.4e-67	48.7
WP_058264023.1\|2978970_2979348_-	hypothetical protein	M4SNV1	Rhodobacter_phage	3.6e-25	53.3
WP_058264024.1\|2979378_2979630_-	hypothetical protein	A0A1B0T6G9	Thiobacimonas_phage	5.6e-11	48.0
WP_058264025.1\|2979629_2980076_-	regulatory protein GemA	A0A1B0T6H1	Thiobacimonas_phage	1.1e-46	64.8
WP_158509091.1\|2980183_2980351_-	hypothetical protein	NA	NA	NA	NA
WP_058264026.1\|2980343_2980946_-	hypothetical protein	NA	NA	NA	NA
WP_058264027.1\|2981028_2981319_-	HU family DNA-binding protein	B5TA87	Burkholderia_phage	2.5e-10	50.6
WP_082644173.1\|2981370_2982225_-	DUF3164 family protein	A0A1B0T6L8	Pelagibaca_phage	2.0e-76	63.2
WP_074646835.1\|2982226_2982424_-	hypothetical protein	NA	NA	NA	NA
WP_058264029.1\|2982438_2982813_-	hypothetical protein	A0A1B0T6M5	Pelagibaca_phage	4.0e-29	50.4
WP_058264030.1\|2982809_2983376_-	hypothetical protein	NA	NA	NA	NA
WP_058264031.1\|2983375_2984116_-	ATP-binding protein	A0A1B0T6H3	Thiobacimonas_phage	3.0e-52	47.2
WP_058264032.1\|2984155_2986333_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B1P6Z4	Rhodovulum_phage	8.8e-185	48.0
WP_058264181.1\|2986332_2987181_-	ParB N-terminal domain-containing protein	A0A1B0T6M1	Pelagibaca_phage	2.4e-90	64.9
WP_139193597.1\|2987293_2987527_+	hypothetical protein	NA	NA	NA	NA
WP_058264034.1\|2987665_2987953_-	hypothetical protein	NA	NA	NA	NA
WP_058264035.1\|2987949_2988363_-	hypothetical protein	NA	NA	NA	NA
WP_058264036.1\|2988362_2988611_-	hypothetical protein	A0A1B0T6N5	Pelagibaca_phage	2.5e-11	56.7
WP_074646836.1\|2988702_2989398_+	S24 family peptidase	A0A1B0T6N0	Pelagibaca_phage	5.3e-75	60.7
2993694:2993708	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP051182

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26634 : 37444

Enterobacteria_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074647208.1\|26634_27465_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.6e-49	41.9
WP_074647171.1\|27474_28266_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_074647173.1\|28275_29244_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.9e-31	31.6
WP_074647174.1\|29298_30174_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.9e-93	56.8
WP_074647176.1\|30170_31031_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	2.6e-31	36.7
WP_074647178.1\|31043_32096_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	6.5e-93	50.0
WP_074647179.1\|32092_32662_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.5e-39	47.0
WP_074647181.1\|32777_33779_-	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	1.1e-62	41.2
WP_074647182.1\|34234_35632_+	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	9.2e-10	28.4
WP_074647184.1\|35707_36697_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_074647185.1\|36748_37444_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.2e-11	28.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP051181

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP051182

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection