CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048837	[Clostridium] innocuum strain LC-LUMC-CI-001 chromosome, complete genome	3 crisprs	csa3,cas3,RT,WYL,cas14j,c2c9_V-U4,cas14k,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	0	1	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048837_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048837_1

284652-284766

Orphan

Consensus_repeat	Method
CTATATAATATAAGGAAGAGTTTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048837_1

>merge|NZ_CP048837|1|284652-284766|CRISPRCasFinder
CTATATATTATAAGGAAGAGTTTTGTCACTGCCCTATATAATATAAGGAAGAGTTTTTTTGAAAAATGAATCATCAGAACCAGAGTGACTATATAATATAAGGAAGAGTTTTTTT

>NZ_CP048837|1|1|284652-284766|CRISPRCasFinder
CTATATATTATAAGGAAGAGTTTTGTC	ACTGCCCTATATAATATAAGGAAGAGTTTTTTTGAAAAATGAATCATCAGAACCAGAGTGA
CTATATAATATAAGGAAGAGTTTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048837.1\|WP_008818247.1\|291732_292191_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|334031
NZ_CP048837.1\|WP_167871284.1\|282459_284322_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP048837.1\|WP_008818234.1\|269137_270241_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP048837.1\|WP_002606956.1\|272887_273211_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283747
NZ_CP048837.1\|WP_021420404.1\|270407_271763_-\|DUF3887-domain-containing-protein	unknown	unknown	gnl\|CDD\|379023
NZ_CP048837.1\|WP_008818244.1\|285466_287110_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP048837.1\|WP_008818249.1\|294052_294985_+\|transketolase	unknown	unknown	gnl\|CDD\|238970
NZ_CP048837.1\|WP_002606967.1\|287128_287449_+\|DNA-directed-RNA-polymerase-subunit-delta	unknown	unknown	gnl\|CDD\|275360
NZ_CP048837.1\|WP_002606969.1\|287709_288579_+\|class-II-fructose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|238477
NZ_CP048837.1\|WP_008818241.1\|281035_282280_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366353
NZ_CP048837.1\|WP_002606974.1\|293673_293952_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP048837.1\|WP_008818238.1\|273597_275286_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340400
NZ_CP048837.1\|WP_002606955.1\|271823_272678_-\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132847
NZ_CP048837.1\|WP_008818246.1\|289578_291612_+\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP048837.1\|WP_021420890.1\|285053_285470_+\|DUF1934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378129
NZ_CP048837.1\|WP_008818239.1\|275299_276001_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP048837.1\|WP_009270202.1\|278055_279165_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238434
NZ_CP048837.1\|WP_002606970.1\|288879_289551_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048837.1\|WP_002606962.1\|279582_280776_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP048837.1\|WP_008818248.1\|292223_293648_+\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502

Protein	Function_ID	Function_description	E-value
NZ_CP048837.1\|WP_008818247.1\|291732_292191_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|334031	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.	4.5891e-28
NZ_CP048837.1\|WP_167871284.1\|282459_284322_-\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	1.71029e-162
NZ_CP048837.1\|WP_008818234.1\|269137_270241_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP048837.1\|WP_002606956.1\|272887_273211_+\|hypothetical-protein	gnl\|CDD\|283747	pfam06153, CdAMP_rec, Cyclic-di-AMP receptor. CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. Cyclic-di-AMP (c-di-AMP) is a bacterial secondary messenger involved in various processes, including sensing of DNA-integrity, cell wall metabolism and potassium transport. CdAMP_rec has a ferredoxin-like fold and is structurally related to Pii-signal transduction proteins.	4.86812e-43
NZ_CP048837.1\|WP_021420404.1\|270407_271763_-\|DUF3887-domain-containing-protein	gnl\|CDD\|379023	pfam13026, DUF3887, Protein of unknown function (DUF3887). This domain family is found in bacteria and archaea, and is approximately 90 amino acids in length.	3.46062e-13
NZ_CP048837.1\|WP_008818244.1\|285466_287110_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP048837.1\|WP_008818249.1\|294052_294985_+\|transketolase	gnl\|CDD\|238970	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.	6.51238e-120
NZ_CP048837.1\|WP_002606967.1\|287128_287449_+\|DNA-directed-RNA-polymerase-subunit-delta	gnl\|CDD\|275360	TIGR04567, DNA-directed_RNA_polymerase_subunit_delta, DNA-directed RNA polymerase delta subunit. Members of this family are the RNA polymerase delta subunit, as found in the Firmicutes and the Mollicutes. All members of the seed alignment have an extended C-terminal low-complexity region, consisting largely of Asp and Glu, that is not included in the model. Proteins giving borderline scores should be checked to confirm a similar acidic C-terminal domain. [Transcription, DNA-dependent RNA polymerase].	1.02466e-29
NZ_CP048837.1\|WP_002606969.1\|287709_288579_+\|class-II-fructose-1,6-bisphosphate-aldolase	gnl\|CDD\|238477	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.	3.62969e-136
NZ_CP048837.1\|WP_008818241.1\|281035_282280_-\|hypothetical-protein	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.43942e-30
NZ_CP048837.1\|WP_002606974.1\|293673_293952_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.06823e-27
NZ_CP048837.1\|WP_008818238.1\|273597_275286_-\|sensor-histidine-kinase	gnl\|CDD\|340400	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Enterococcus faecium VanS HK of the VanS-VanR two-component regulatory system (TCS) which activates the transcription of vanH, vanA and vanX vancomycin resistance genes. It also contains Ecoli YedV and PcoS, probable members of YedW-YedV TCS and PcoS-PcoR TCS, repectively. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); most also have a HAMP sensor domain.	2.80509e-33
NZ_CP048837.1\|WP_002606955.1\|271823_272678_-\|patatin-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	1.4973e-116
NZ_CP048837.1\|WP_008818246.1\|289578_291612_+\|transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.58352e-55
NZ_CP048837.1\|WP_021420890.1\|285053_285470_+\|DUF1934-domain-containing-protein	gnl\|CDD\|378129	pfam09148, DUF1934, Domain of unknown function (DUF1934). Members of this family are found in a set of hypothetical bacterial proteins. Their precise function has not, as yet, been defined.	6.02337e-06
NZ_CP048837.1\|WP_008818239.1\|275299_276001_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.41348e-76
NZ_CP048837.1\|WP_009270202.1\|278055_279165_+\|amidohydrolase-family-protein	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	1.07801e-83
NZ_CP048837.1\|WP_002606962.1\|279582_280776_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.90603e-17
NZ_CP048837.1\|WP_008818248.1\|292223_293648_+\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	9.38248e-174

>NZ_CP048837.1|WP_167871284.1|282459_284322_-|penicillin-binding-protein
MKRIRKLVFGMIFALLTLIVCVYAYALFNRLPLDEQRKNITIYDVNGDIIYESNFKKNMQWTSIDDIPEFVQDAFVSVEDKRFYYHAGFDPVRITKALGTNLIHGDIRQGGSTITQQYAKNLFLTNEQTLSRKVQEFFYAARLEMQYSKKDILEGYLNTVYFGHGVYGVNAAAEYFFDKKLNQLSIAETAMLIGIPNGPSIYSPFLHKDNAIKREHLILEVLKNNGVITSKQYEAAKKEKLKLSTNVNISTYGIDEYYIDAVIQELSKLNIDLNREIHVHTYYDPKVQMQLSNAVTKHVDLSSELEVAGIITQPFTGNVMAMVGGKDYTISQYNRAIYSSRQVASTIKPLLYYCALQQGFTPSTQFTSQKTTFRVSDDEEYAPTNYGNVYANGKISMINAISLSDNIYAVKTQLFLGVDTLHNALLDFNIRQSSPNPSEALGTVNMSLLELSRIYNTFASEGLYVKPALISHITSGNDVVYKREVQPKRLLQRDETLILNQMMTSTFDIRNKSYTFSSMYGHEPDITVAAKSGTSDWDSLVMGFNPEYTVGIWSGFDDNRELEKQYYTISKDIFKDTFNGLYKKRKGVWYQPSDGIQEKRVNPITGTEDSGGSVYWFKKE
>NZ_CP048837.1|WP_008818241.1|281035_282280_-|hypothetical-protein
MNFIEKHTKKVALILCLATAGTAVTTVYAATNADGWHGTGADRIYKEEGAVKTSSWLFDESGSFYLDADGHPIISEWKTINGSVYYFDSEGHRVNGKQVIDGHEYQFQKSGILLTGWNQTKTSYYSEFGEKLNGLQTIDEKQYLFDKDGNIVSGWQTVDGKKLYFKEDGSLATAKTEIDGKTYNFSSDGSLQSGWVKKDGEKYYYDKYGFMTKGWKTIDGKKYYFNRKGQAATSTKYAGYKFDKNGVAKKIKEKKKEETTESNENVQSTRTAGNSSAAASSSSSSSSANLNPAGSGSNSSAAGIAASMVGSPYVWGGSSPAGFDCSGLTSYAYAQAGISIPRTAGGQASVGSAVSYGNMQPGDLIVWSGGAHVSIYVGGGQMVHATNPSTGVITSSVSFWSNNSGQSITAIRRP
>NZ_CP048837.1|WP_002606962.1|279582_280776_-|hypothetical-protein
MNFIEKNTKKVALVLCLATAGTAVTTVYAAQNSDGWHGSGTDRVYKMEGQVKTSSWVFDEAGSYYLNNEGHPITSSWKEINGSTYYFDAEGHRVNGKQVIDGHEYTFQKSGVLLTGWNEVKDTYYNEFGVAVTGVQKIDNKTYNFGEDGKLVTGWTKVNGKKVYFTKDGSLASGVVTIDGKKYNFNDDGTITTGWVKKDGEKYYYTDYGFMTKGWKTIDGKKYYFNKKGQAATKTEYAGYKFDKNGVAKKIKKKEKAETTDNASEDVADSEDTASNGSGSRAASSSKNLGTADGGIASAALAQLGVGQDCTALASNALAAQGIYFHGWPAEYMSLGSVTSSPQPGDLIYYDDAGAGVPHIAVYVGNGQAVHGGWKGGTTVEASAYIGSGPVFIRVNK
>NZ_CP048837.1|WP_009270202.1|278055_279165_+|amidohydrolase-family-protein
MKRIIENIKFMQDGTMVFGDLHLEDGFVERIDYKTPHMVSDIAIPGLVDIHTHGFHGYSCENTDIGNLHALALEYPKRGITSFCPTVSARSLDEFRTIIDAYRKAFQGDYRGARYEGVHLEGPYLNPDRRGSMKKENLMEIHLGELEDFLSEYHDNIKIMTIAPDVKNAMEAISLLHLYGVEISLGHTNADFTQTNEAFACGATQITHLGNTMPEITHHKPGMMDAVFLSDCLCEVIMDGVHMQKEMLKWVIRLLGCSRVVAVSDGTPFSGFHYPDGYELEDGSVIRNGAVYKEDVLLGSSCDLLDIFQYLYKQEGYDLSDCIRMCSTNAARMLKTYAHEIGLGKNINLVILGHDMRVKEVIINGRSAL
>NZ_CP048837.1|WP_008818239.1|275299_276001_-|response-regulator-transcription-factor
MSSVILIAEDEASIEDAIEIYLKSQGYQTLKAANGAIAWEQLQNNTVDLAIIDVMMPVMDGIALTMKIRELYEFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHLRYQQLLEQKQEVEDRLLLGGIELHRKSKEVFVDGESRRLTPIEFRILQLFMEHPGQVFSSDDIYEHVWNETAVNTETVMVHIRNLREKIEINPRAPRYIKVVWGVGYKIEKQ
>NZ_CP048837.1|WP_008818238.1|273597_275286_-|sensor-histidine-kinase
MKKVHWTTLILLSGIALAIISMFLVFPSLDQKAIEEYKTHYKYINSEEERDFSGNTFIKEPADDSIPMEYSRIEEYMEPALQRITLLVGTLLFAWSLLMPYKWAVKSGFYRFFTQRLPYEITLGAALLGLYFYKIRGSELVYRMFRLPEDFSLDILSADTWQISSYYLLQIACLSGLFAVLSGCGYAIRSMQHNGVRVSLQKHSLLTQNSVLLGRQAKRLYRYIIGFDFHDKGELRLLAALFLHIVCILIVCIYRDSGIFFYLLLSCYCLILYSIRHRQNSRMKRDFQSLEGSIQRVANGDFQTTVDEDLGIYESLKDNLQNIETSFQEAVAQEVRSQNMRTELITNVSHDLKTPLTSMISYIDLLKNKNLPEEERLRYITILESGSNRLKHLIEDLFEVSKASTGNIQLDRMDVDLISLIKQVEMEYEALFIQHDLTIRNTFSKEKIVLSLDPQKTFRILENLLVNAGKYALEHTRVYVYVEEREQEVYISVKNISATELDFDPADIMERFQRGDKARNTEGSGLGLAIAKSFTVLQNGHMHISFDADLFKVELIFQKELP
>NZ_CP048837.1|WP_002606956.1|272887_273211_+|hypothetical-protein
MKLILAIMSNDDSPAVSSALTKENYQVTRLATTGGFLRAGNTTLIVGTDDDKIERAIEVIGEYSRRRTEVVPSTASYDIGRYASFPVEVQVGGATIFVIDVEKFIKL
>NZ_CP048837.1|WP_002606955.1|271823_272678_-|patatin-family-protein
MSKLGLVLEGGGMRGIYTAGVLDFFMEQNLYTDGVIGVSAGACHACSYVSKQIGRAYRTNTAYLKDKRYMSVSSLLKTGDFFGAKFVYEDIPNTLDPYDFDAFNTSHTKLYAVASNLETGKAEYLQCINMKRDVIYVRASASLPLLSRIVEVDGKKLLDGGATDSIPIHKFQEMGYTKNIVVLTQCKEYRKGKNNLLPMIRRSYKKYPKFIKALETRHIAYNRTLDELALMEKEGSVFLIRPSSPVEISRLEKNEARLRELYEQGYMDAKNSFEELKSFIANEN
>NZ_CP048837.1|WP_021420404.1|270407_271763_-|DUF3887-domain-containing-protein
MKKKIQIVICCLLCFLMAACSSEKEKKGQSDEVADIVLSDKQSDMALQFVKDLTQRKYDKLQKDYAYDEQMHKAVREDSFQKQLDAYNDSLGSLIEAEQPYGQSYQNSTIIMIPCRMEEQNTNIQLSLNEQDQIQGLFFKPYKSQKKAAKAPDGVKEREVELQIADGKKLSGRLTTPAEGKSFPLVILLAGSGPNDMDETIYDNKPFQDIAWGLAKKGIASYRYDKRTYTYPESFTVKDTVEQEVIFDAVAAFSQMKQQKQIDTNKIYILGHSLSGYLIPRIAAETDGCAGYIMMAAPARALDELLMEQVTYLAKLDGNITKDEQAAIDQYKQDQQDLQRIDELSDAKIFFGGMSKAYMKDLLSYDAVQQAADIKVPVLCAQGLRDYQVTEEDQAIWRKNFETHKNWKFTTYPNATHLMIDGEGTPTNEEYKTKGHVNQAFIEDIASFIKK
>NZ_CP048837.1|WP_008818234.1|269137_270241_+|redox-regulated-ATPase-YchF
MPLTAGIVGLPNVGKSTLFNAITKSQVEAANYPFATIQPNVGVVEVPDYRIDRLVELFHPKKTIYTTFEFTDIAGLVKGASKGEGLGNQFLSNIRLTDAICHVVRCFDDADITHVEGSVDPIRDIEIINLELIMADLQTIDNRLSKVERKAVTNKDKDALAEVVVLKKLKEALEAGKPARSVELDKDELLLIKAFSLLTIKPMIYIANMSDEEIADPQANPYFQKVKELANLEHNEVVPVCAKIEEELSELDKEEKTEFLNELGIQESGLDKVIKTAYHILDLCTFLTAGEDECRAWTFHRGMLAPQCAGVIHTDFEKGFIRAECYKFDDIDKLETEQAVKEAGKLRLEGKEYVVQDGDVLHFRFNV
>NZ_CP048837.1|WP_021420890.1|285053_285470_+|DUF1934-domain-containing-protein
MLMISGDSMKKHIVVKQKHLYTEERNLMFEGQAFFSDSNGCLRLSYTERGSNTAVSVEAENEGLRIQRDGELMTRLTFQHKKQTTGSVLSEFGTIDIGVFTHKYIKRENIIAIEYDILSGDEVTDGYRILWILKEDKV
>NZ_CP048837.1|WP_008818244.1|285466_287110_+|arginine--tRNA-ligase
MNQIENNLKQALHNAVQKAFDTELDTASIVIEIPKDKSHGDYSTNVAMQLTRVLKNNPRKIAEAVVEALDKAAADIESCEIAGPGFINFTIKNTSLAQIITRVLQEQDNYGNSNDGQGLKVNVEYVSANPTGDLHLGHARGAAWGDSITRLMKASGYDVCREYYVNDAGNQIVNLGKSLQARYREHLGLDFDLPEDGYHGEDVKNIAIAIAGEYKDAYVEYSDANLKFFKEKGIAFELDKIRRDLDNFRVHFDVWSSEQSIRDEGKVEKALEVLHEKGLTYEEDGALWFATTRFGDDKDRVLRKKDGSYTYLVPDIAYHKDKLDRGYDLLVDLLGADHHGYIPRLKASIEALGNNPDKLQVDIIQMVRLVENGEEVKMSKRLGNAVTIRELCEEVGVDAVRYFFVQRAVDTHLDFDLGLARKQSNDNPVYYAQYAHARICSILRQASEIAEAQSFELLTHEKEIALMKYINEFTNVVSDAARSRAPHKVCNYIQKLAQHFHSFYNVCKVIDPQQPELSSQRLALLKATKITLKNALYLIGVDAIEKM
>NZ_CP048837.1|WP_002606967.1|287128_287449_+|DNA-directed-RNA-polymerase-subunit-delta
MKKSMVDVAYDLMSTKKKAIVFLKLWEEVCQVMAFTKQQEEDNIAQFYSDLSLDDRFVNVGENKWDLRERHTYHEVVVDTEEILIDEEADDDYEEDDAAKAGDEEF
>NZ_CP048837.1|WP_002606969.1|287709_288579_+|class-II-fructose-1,6-bisphosphate-aldolase
MALVSATEMLNKAHEGHYAVGAFNINNLEWTKMILLAAEEAKSPVMLGVSEGAAKYMCGFKTVVAMVKEVHDSLGITVPVALHLDHGSYEGAKACIEAGFTSVMFDGSHYAFEENLAKSKEMIELAHSKGLSIECEVGGIGGEEDGVASMGELADPQECKTIAELGVDFLAAGIGNIHGKYPADWAGLNFERLGEIQDVTNGKPLVLHGGSGIPADQIAKAISLGVSKINVNTELQLVFADATRKYVEAGKDLEGKGYDPRKLLKPGCDAIKDKVTSMMKEFGSYGKAE
>NZ_CP048837.1|WP_002606970.1|288879_289551_+|hypothetical-protein
MNKIMLLVLLTIIMIAVAVPFVIRSLLWNRVLKLLHNGQYDKVLIMLNSKAFQLFFKEYDRNWNTLRVYLAQGNNRKIEEQTKKLLDSRLTNAQAYQIASQTYFYFLDRENRDVCERLLSYIEKSAGEEELLYDRMLFRIMIEKKSEDIAEMEALLEKKEAEKIKKDQKQDQQVQMGILQYLLGLQYSYQKNRRQMELYLNKARVNLKGTPYHKKVKQLLNKA
>NZ_CP048837.1|WP_008818246.1|289578_291612_+|transcription-antiterminator
MNIMLNLDKRCQEILKRLMYAGGYLKIQDLADEMQISRRSVYYDITKINEWLEDQEIDPLVQERGKGIFVSSEQSRRIQEAMSDQGSDNYHVFTPDERNRIEICAIIIRSHPLYIENFMEVCQVSRNTVINDLKNVIRFLENYNLELTYDIKSGYRIAGDTIKKRAIFFMLFPSLWEYYDRQVVLVENEQYIREILVKLKKIESELHAEYVSGVLPTLAVFMSAIDKRSDQLTFSDMDEEEIVETKEYQLVSQYFPDLENGEKIYVTLHLLGSRLQTIPVNVMKEQDETYEISKNLVHEFERLTCIFFDQEEELVDAINAHLKTSLYRYRYGIQLGNPMLNSIKTEYEELYEITKKSCEYLEKKLGCLISDAEVAYITLHFGAFLTTNQTQKRNLRILIICPNGIGTGNMLRNEVASLVPQATEIVNLPLSQYEENHDFDVVISTVVLPKEKKLIVVHPILTDQDRVTILRNCMYTEPQANLQIQEIVRLATSYIPSSKLDEFEKDLQDYYSSIQIRTVPHRNFGQNLVYYLKPSHIQICREDCDWEEALRLSCRPLLMEDSITQEYVEAIVEDQRNRGLMMFLADGLVLAHAAIEKGVKQLDVALCTFKHPVTFLNGKQARIIIVLCAEDQTKHIRILNDVLNIFSKKKSIEQLAALESSEDIQSYIRAHTQETEG
>NZ_CP048837.1|WP_008818247.1|291732_292191_+|PTS-sugar-transporter-subunit-IIA
MTSMEKLLQEKNCYLRDRVQDWKEAVHIACEPLIEQNYCTTAYEDAIYEITERLGPYYVLCENLALIHASNQSGVNDTQMAVTVLKEPVKFKPDGYDVRVLVTLVAKDSESHMEGIQAVSNIFSDEKKVQEILDATCPKEIFDLFVSNACEK
>NZ_CP048837.1|WP_008818248.1|292223_293648_+|PTS-ascorbate-transporter-subunit-IIC
MLEFIINILSTPAILVGLMSLLGLALQRKPIEDIVKGTVKTIVGFLVLSAGASFLQSGSLNAFGDLFNYAFSMQGVVPNNEAIVSLALKDFATDTAYIMCLGMVFNIVMARFSRMHYIFLTGHHTLYMACMLAVILNVGGLENWQLWLGGGLLLGFIMAFSPAFCQPTMRKITKTDELGFGHFGGAGYWFAAQCGKLFKGKGKSTEEVNFPQRLTFLRDTTVAIGLTMVIFFLIVTTVAVSKGILSADAAAILEKYPNLAGLLNVGAETKTHWAVWAITSGLSFAGGVYIILSGVRLIVGEIVPAFRGIAEKLVPGAVPAIDCPVVFPYAPNAVLIGFLVSFLGGIVGLFILGFIDTNLMSVALILPGVIPHFFCGATAGVFANAEGGLKGCVFGSFMHGLLITFLPAICMPVMGSLNFANCTFSDADFSWMGIVFGNIAQIVQGVGLLGVCAVVFLIPIVYNYVAPKKAKKAE
>NZ_CP048837.1|WP_002606974.1|293673_293952_+|PTS-sugar-transporter-subunit-IIB
MEIRSIMCCCGQGLGSSMIVSMNVEKALKKLGVSGVKVEHTAIGEVTEGSADLFVIGADLAPQMTSYKNKIILNQLMDMNEIETKLKEVFGL
>NZ_CP048837.1|WP_008818249.1|294052_294985_+|transketolase
MYSERKKSCTIHCLKACTLSEKEVIALETSQLKELQVFAAQLRMDILEMLEHRGYGHLGGSLSIVELMSVLYGKQLHVDPKNPKMEDRDMVVLSKGHAGPAWYCALAEKGFFDKEWLMTLNDGGTRLPSHPDRTKTPGVDMTTGSLGQGTSAAAGIATGLRMKESSRYVYMIVGDGELNEGQCWEAFQYVAHYKLNNCIVIIDDNKRQLDGYTKDVMNPFSIPDKMKAFGFDVQVVKGNDIEAIDAAIEQAKAVKDQAVCIVLDTIKGQGVPYFEEMVSNHSVKFNSDEVINETHKAIADLKQFIEKEGQ

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Crispr_ID: NZ_CP048837_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048837_2

1250451-1251103

Orphan

Consensus_repeat	Method
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	CRISPRCasFinder
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	CRT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	PILER-CR

9 spacers

The CRISPR arrays of NZ_CP048837_2

>merge|NZ_CP048837|2|1250451-1251103|CRISPRCasFinder,CRT,PILER-CR
TGTTTGATCGCCAAGCTCTGAAAAAGAGCTTGGCGGACAATTCAATCATACTGTCGATAAAGGCTGGAAATTTAGATCAACAAGCTCCGCGAAAGAGCTTGACCGTATTTTTCGGAAAAGACAAAATACAACAAAGTATTTAGATCCACAAGCTCCGCGAAAGAGCTTGACCGTATCGAAGGTCAATGACCATGACGCACCGTTATTTAGATCCACAAGCTCCGCGAAAGAGCTTGACTTCCTATAATGTCCATAGGGTGACCGCAACAATGAGATTTAGATCCACAAGCTCCGCGAAAGAGCTTGACTTTGCGCTGTACAGCCTTATAATTCGTCATATAGCCATTTAGATCCACAAGCTCCGCGAAAGAGCTTGACCATCAGCATCAATCATCCCTCCGCAATCTTCCACATTTAGATCCACAAGCTCCGCGAAAGAGCTTGACAATAAGCAATTTATATATTTACGTAGGTATAAAAGCATTTAGATCCACAAGCTCCGCGAAAGAGCTTGACTTGACATTAAATCATTCTTCTGTTATAATTAAGGAATTTAGATCCACAAGCTCCGCGAAAGAGCTTGACAGGATTTACTAAGAGAGGGTGTACCAATGATGATATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC

>NZ_CP048837|2|2|1250451-1251103|CRISPRCasFinder
TGTTTGATCGCCAAGCTCTGAAAAAGAGCTTGGC	GGACAATTCAATCATACTGTCGATAAAGGCTGGAA
ATTTAGATCAACAAGCTCCGCGAAAGAGCTTGAC	CGTATTTTTCGGAAAAGACAAAATACAACAAAGT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	CGTATCGAAGGTCAATGACCATGACGCACCGTT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	TTCCTATAATGTCCATAGGGTGACCGCAACAATGAG
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	TTTGCGCTGTACAGCCTTATAATTCGTCATATAGCC
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	CATCAGCATCAATCATCCCTCCGCAATCTTCCAC
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	AATAAGCAATTTATATATTTACGTAGGTATAAAAGC
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	TTGACATTAAATCATTCTTCTGTTATAATTAAGGA
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	AGGATTTACTAAGAGAGGGTGTACCAATGATGAT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC

>NZ_CP048837|2|1|1250451-1251103|CRT
TGTTTGATCGCCAAGCTCTGAAAAAGAGCTTGGC	GGACAATTCAATCATACTGTCGATAAAGGCTGGAA
ATTTAGATCAACAAGCTCCGCGAAAGAGCTTGAC	CGTATTTTTCGGAAAAGACAAAATACAACAAAGT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	CGTATCGAAGGTCAATGACCATGACGCACCGTT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	TTCCTATAATGTCCATAGGGTGACCGCAACAATGAG
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	TTTGCGCTGTACAGCCTTATAATTCGTCATATAGCC
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	CATCAGCATCAATCATCCCTCCGCAATCTTCCAC
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	AATAAGCAATTTATATATTTACGTAGGTATAAAAGC
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	TTGACATTAAATCATTCTTCTGTTATAATTAAGGA
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	AGGATTTACTAAGAGAGGGTGTACCAATGATGAT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC

>NZ_CP048837|2|1|1250520-1251103|PILER-CR
ATTTAGATCAACAAGCTCCGCGAAAGAGCTTGAC	CGTATTTTTCGGAAAAGACAAAATACAACAAAGT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	CGTATCGAAGGTCAATGACCATGACGCACCGTT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	TTCCTATAATGTCCATAGGGTGACCGCAACAATGAG
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	TTTGCGCTGTACAGCCTTATAATTCGTCATATAGCC
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	CATCAGCATCAATCATCCCTCCGCAATCTTCCAC
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	AATAAGCAATTTATATATTTACGTAGGTATAAAAGC
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	TTGACATTAAATCATTCTTCTGTTATAATTAAGGA
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	AGGATTTACTAAGAGAGGGTGTACCAATGATGAT
ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048837.1\|WP_008819227.1\|1238877_1239696_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP048837.1\|WP_009588010.1\|1239717_1241034_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP048837.1\|WP_008819215.1\|1260638_1260854_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048837.1\|WP_021419756.1\|1245226_1245985_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048837.1\|WP_008819220.1\|1251468_1252638_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181749
NZ_CP048837.1\|WP_021419759.1\|1236693_1237719_+\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|239203
NZ_CP048837.1\|WP_002608173.1\|1237733_1238123_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223299
NZ_CP048837.1\|WP_008819221.1\|1248929_1250330_-\|glutamate-synthase	unknown	unknown	gnl\|CDD\|239202
NZ_CP048837.1\|WP_009587814.1\|1259125_1260217_+\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|378053
NZ_CP048837.1\|WP_009587960.1\|1257338_1258199_+\|sce7726-family-protein	unknown	unknown	unknown
NZ_CP048837.1\|WP_009269546.1\|1241189_1241963_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|225070
NZ_CP048837.1\|WP_009269538.1\|1254913_1256455_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP048837.1\|WP_009587937.1\|1258199_1259129_+\|sce7725-family-protein	unknown	unknown	unknown
NZ_CP048837.1\|WP_167871303.1\|1252634_1253237_+\|type-1-glutamine-amidotransferase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|367568
NZ_CP048837.1\|WP_008819228.1\|1238338_1238824_+\|DUF4358-domain-containing-protein	unknown	unknown	gnl\|CDD\|379531
NZ_CP048837.1\|WP_035303261.1\|1261188_1261452_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048837.1\|WP_021419755.1\|1246833_1248831_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP048837.1\|WP_008819218.1\|1253456_1254791_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP048837.1\|WP_009587940.1\|1257088_1257307_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226181
NZ_CP048837.1\|WP_008819230.1\|1235925_1236363_+\|bacteriocin	unknown	unknown	gnl\|CDD\|273542

Protein	Function_ID	Function_description	E-value
NZ_CP048837.1\|WP_008819227.1\|1238877_1239696_+\|hypothetical-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	2.07131e-15
NZ_CP048837.1\|WP_009588010.1\|1239717_1241034_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.07459e-110
NZ_CP048837.1\|WP_009269546.1\|1241189_1241963_+\|amidohydrolase-family-protein	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	6.54565e-14
NZ_CP048837.1\|WP_008819220.1\|1251468_1252638_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181749	PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional.	2.16041e-159
NZ_CP048837.1\|WP_021419759.1\|1236693_1237719_+\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|239203	cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.	1.11821e-76
NZ_CP048837.1\|WP_002608173.1\|1237733_1238123_+\|hypothetical-protein	gnl\|CDD\|223299	COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion].	0.00345968
NZ_CP048837.1\|WP_021419755.1\|1246833_1248831_+\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	2.34831e-111
NZ_CP048837.1\|WP_009587814.1\|1259125_1260217_+\|RES-family-NAD+-phosphorylase	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	6.02048e-14
NZ_CP048837.1\|WP_009269538.1\|1254913_1256455_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP048837.1\|WP_167871303.1\|1252634_1253237_+\|type-1-glutamine-amidotransferase-like-domain-containing-protein	gnl\|CDD\|367568	pfam03575, Peptidase_S51, Peptidase family S51.	5.21877e-43
NZ_CP048837.1\|WP_008819228.1\|1238338_1238824_+\|DUF4358-domain-containing-protein	gnl\|CDD\|379531	pfam14270, DUF4358, Domain of unknown function (DUF4358). This domain family is found in bacteria, and is approximately 110 amino acids in length.	3.07163e-12
NZ_CP048837.1\|WP_008819221.1\|1248929_1250330_-\|glutamate-synthase	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	1.49492e-153
NZ_CP048837.1\|WP_008819218.1\|1253456_1254791_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.79931e-143
NZ_CP048837.1\|WP_009587940.1\|1257088_1257307_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	1.59469e-10
NZ_CP048837.1\|WP_008819230.1\|1235925_1236363_+\|bacteriocin	gnl\|CDD\|273542	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.	0.000832573

>NZ_CP048837.1|WP_008819221.1|1248929_1250330_-|glutamate-synthase
MKYVCEICGYMYDEAVEGTSWVNLDSTWKCPLCTAPKECFKKVASEEDASATSKSNDATSLAIQKNAKKEDILETSMSLIHEMAIHNASRIEAMRTHKSVPGWDDILLLGGQLAHPPLADKADVDTTTIIGKNARRPMVLNHAVYVSHMSFGALSKEAKTALAKGTAAVHTAQCSGEGGILPDEIDHAYKYIFEYVPNKYSVTDENLKRSDAIEIKIGQGSKPGMGGHLPAEKVTEEISAIRGKPLHQDIISPSKFEEIKTKDDLKQLVTSLRERSDGRPIGIKIAAGHIETDLEWIAYAQPDFITIDGRGGATGASPKYLKDNSTVPTVYALARARAYMNQHHMTQELIITGGFRTSGEMIKALAMGADAIAIASAAMIAIGCQQYRICHNGKCPMGIATQDPELRKNFSIDKGAKRLENYLHVLREELKSFARISGHTCIHDLSREDLCTTSSEISNHTGIPHC
>NZ_CP048837.1|WP_021419755.1|1246833_1248831_+|S9-family-peptidase
MKDTIKLKDFLDFTYLSNLSFAPDEEHGVFVGSKCVEKDNSYQMKLYLTDGDTVRQLTSHGKEQLYLWDDNETVLFANMRDEEDRKAVENGEERTCFYRISIHGGEAVKAFTIPLQVTSIKKAADGEYVFCADYHLEYSRMYQMNADEKDKILQEKKDMQDYEVLDELPFYGNGMGYTNKKRNSLFLYREHDEDIVRISEETCNVYDVELSDNHEIVYYTGESYACKPINKEGVYAYYRNTGEHREILPAGQWSIGKILPWKDNIMMLASEQKRYGLNENGMFYQLNPKSGAVELFASYEDAVGSSVGSDCRYGGGKSICLYKDTVYFITTLFNRSSVYALHSDGSITPVYDREGSVDVIALAKDRLYFAGMQDMRLQELYSYDMHGKSCRQLTGFNEEFYAEKDIRPCVPCNFTQDGMELYGWVLEPRGFDPKKSYPAILDIHGGPKTVYGEVYYHEMQVWANQGYFVFFMNPRGGDGRGNSFADIRGKYGTIDYEDLMKFTDEVLKKYPAIDTARVGVTGGSYGGFMTNWIIGHTDRFKAAASQRSISNWISFAHTSDIGEMFGADQQGADTWKNVDKLWWHSPLKYANQCTTPTLFIHSDEDFRCPYSEGMQMYSALCEHGVATRLCMFKGENHELSRSGKPRHRVKRLKEITTWMDTYLKD
>NZ_CP048837.1|WP_021419756.1|1245226_1245985_+|hypothetical-protein
MHRNAIGLELAKWRFYFEGGDAGAVVDELQYYQNTDGGFAHALEADCWNPASAPSQMFYAVHILHELDYKDKTHPVIQGMLRYLESGKDMEDGFWISILSSNNEYPHAPWWTKTEKKTFDVYMPNADICWFILNFAQKDSSLYTKAESMVQRMLDLFLSQKEVEPHSLESMMFLLRELQKTGSFCGPQTDAAAAHGIQLMRGLIEEDPDHWNAYCITPSFFIHDRLHPLYPEYSTLLKLEVQRIMETRDAEG
>NZ_CP048837.1|WP_009269546.1|1241189_1241963_+|amidohydrolase-family-protein
MDSEQKRRILDAHMHLPTQGISLSEKKEILLKEMQKNGIDEGIVISDSAITSEIGSLKDCLELFSDTCYVHVVGGISPFFNYKEQCKLLDTALSEKKIVGIKLFCGHESFYLSDNILEPVYALAETYNVPMLFHSEKDSSQYASYFAVCEAVRQHPNITFVCCHCHYPNVEACFQRYKNVNNIVFDISSIADVQMTADMRKAVQSELQRHPDAIMFGSDYAGCSQADHLDFAMSLAVSDDIRNRLLYKTAYRVFHLA
>NZ_CP048837.1|WP_009588010.1|1239717_1241034_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MKVTIKKTGINGEGIGYIDRMPVFVPQALIGEEVEIRIVDKQKRYATAELLRVVKSSKNRIRPKCFIQNTCGACPLMIARYPAQLEYKQDLLKQSLIKYAQIDPRKVARVKASEDVFGYRNQFKLPCAMEEGRLVSGLFMPNSNYFIDVKKCWIHEDGLERVRMDIMHVLNTHDCVSYNPHDKKGIRNLVVRGFDNRYQCTIVTGNEELDERLISDLMRIKGLTSLWQSIHTIKKTPEVFGNKMMHLAGETSLAMELDGLKLRISPRSFFQLNSKQAVQLYRTIASMVKENNELIVEAYSGIGAISLYLKDKAKEIIGIESIKDAVVNANQNAALNGCEHVSFLCDDAANKLTYLSKKRSIDVLVVDPPRSGLDDAMLECILRSKIKNIIYVSCNPATLGKNLAVLCSRYNVDRIQPIDIFPHTPHVESVVLMSRKNK
>NZ_CP048837.1|WP_008819227.1|1238877_1239696_+|hypothetical-protein
MKWIMDLYREFTSFEGSLFKYSLSFSLLLALAPSLLLIAMLFRFAYLPMDIIMKFLISFMPDMSMDGLDQVFQFFANQNYNITSFIVTMCVSFYLASRSIFSFLLISASHESVEVPKWSIRIKSVVLFVSLVLLLVLSIFIATRLNEFLPIVSAVIMLLLFTMMYRALSFRKRNWSFGIIGAMFSTICILGLAALFVTIVSHFTSYKDVYGPLASLVTLLLAIYLISCIIYLGFCLNLICEEDYGREEALPLKNEKFFILCSELTKRIRSRF
>NZ_CP048837.1|WP_008819228.1|1238338_1238824_+|DUF4358-domain-containing-protein
MKKLLIIGLLLCLMSGCQKNTGTFAQGDKNLSSVFADINEQIADGAFSIPLLKDTALSEREVEALYQLDMTKIESCMVKTAAVQAQLGEIALFQVKKEHEGDVKKAIKSRKEALKKQWGAYVPEAADLLYQAKEGRIGQYYYFVLGSDSEKVVNYMQKMDA
>NZ_CP048837.1|WP_002608173.1|1237733_1238123_+|hypothetical-protein
MNSFENNAFFWQKLDTLFLSSKLVIDRPRNTCHYKYSNLVYPVDYGYLNDTTGSDQAPIDVFRGSEKSNLVQSVVISADILKKDCEVKLLVGCTEEDENDILEFLNQTEFQKAVLIRRGNEVPEWAQND
>NZ_CP048837.1|WP_021419759.1|1236693_1237719_+|alpha-hydroxy-acid-oxidizing-protein
MKTWQEVYANAKTLCAKCRCCPVCNGLACRGETPGPGGKGSGSAFVRNAEMLKKVFITMDTISDNTEIDTTSEFFGHKVSFPVYAAPISGILQNYGAELDDMSYTRALVDGCRRAGTLAFTGDGMHDEMFKGPMSVVAQHEGFGVPTIKPWSREHMAWRIELAKEGHALAIASDIDASGLTNLRTSITPVGFKNVEELKEITRICGDVPFILKGILSVKGARKALEAGASGIIVSNHGGRVLDDCLSGIEVLEDIVKVVDGRMKVFVDGAFRTGNDVFKALALGADGVLIGRPVSQAVIGDGSDGLVTYLEKIRLELKEAMAMAGCKTIQDITRDCVSVTY
>NZ_CP048837.1|WP_008819230.1|1235925_1236363_+|bacteriocin
MKKFILSVFCCMLLLTGCSNKVQEKGKVQQIGIEDAFSKMDKKETFLLMITRDKCYYCQLIHKMLDDTIEDHPTTIYNVKMDDSTTENLYADNDLLKTRLEKPGTTPHVYYIKDGVVKDDITGFDEENPLEFWEWVKKHNIENLK
>NZ_CP048837.1|WP_008819220.1|1251468_1252638_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKFSKRMDLLAEGVFSRLDEEKQNMLASGKAVYDFTIGSPNIAPSKEVMDALITAAQQPESYMYSLHDTKELKETIQAWYRKRYQVELDTETEILSLQGSQEGLAHVALALCDEGDIVLIPAPSYPIFANGPKIAGAELYEMPMLKEYDYLIQFDAIPEEIAEKAKMMIISYPNNPTGATAPDSFYEELIQFAKAHDIIVIHDTAYSNLVFDGEEGKSFLYYAGAKDIGIEFNSFSKTYGMAGARIGICVGNAEIVGILRKLKSNIDYGMFLPIQKAAIAALTQDQSIVKETRETYQRRRNRIVAGAAAAGWHIASCKSTMFLWAQIPEGYGSSEEFALNLLKCSGMLVTPGSSFGAYGEGFVRIALVQSDEVIEQALQALKESRFFLK
>NZ_CP048837.1|WP_167871303.1|1252634_1253237_+|type-1-glutamine-amidotransferase-like-domain-containing-protein
MKTLIAIGGGSFQKQETMSIDTYAISRCGKTQPHVLFIPLASRDDQGYAKRFKQYYRSLGCQVEALRLLHTKLSNEEIYKKFRSQDMIYLGAGNTVFLMKQLKQRKLDLLLKELSQQGIVICGISAGANALFEYGYSNIASDTFELVNGMGMIEGAFCPHYQKEERKSFDMVCRKQNLPAIGCADQCAYVVTDEKRFFLE
>NZ_CP048837.1|WP_008819218.1|1253456_1254791_+|NCS2-family-permease
MLEKLFKLNVKQTSVKTEVIAGITTFLAMAYILGVNPSILHDAGMDRASVFMATAISAGFASIVMGLVANYPVALAAGMGVNALFAYTICGQMGMSWQAALAGVFISGLIFIVISVTGIRKAIINAIPKQLKMAIGAGIGFFIAFVGLKNAGIVAGSASTFVTIGNFADPQVLLALFGILLTIALLVKKVPAAVFVGMVITAVIGIVCGAAFGLKGMPALPDTFFEMNFHLNAAGSFMDGFGELFANPLNAFVVIFSFLFVDFFDTAGTLVAVANRIGLVNEKGELENVERALVADAVGTVAGAALGTSTVTSFVESTSGVEVGGRTGLTACTTGILFFVSILFSPIVLSAVTNAVTAPALVVVGILMAQQLKEIEWDNMVYATAGFITVLMMILTYSISNGIAFGFIAYAIAMTAAGKTKEVHITVWVLMVIFLIYFALPQFM
>NZ_CP048837.1|WP_009269538.1|1254913_1256455_+|glutamine-hydrolyzing-GMP-synthase
MADKIIVLDFGSQYNQLIARRIREFGVYSELHPHTMTLEEILALKDVRGIIFSGGPNSVYDEEAFKCDSAIFESGIPILGICYGMQMTHFMNGGSVKACEAKEYGRTEITVETDSPIFKGLPEKQIVWMSHGDQVDTLADGFVKDAYSDTCTFAATSNIEKNIYTLQFHPEVRHSEYGNEILKNFVFEVCKAKNDWSMHSFIDMEIEKIRKTVGTDKVLLGLSGGVDSSVVAALLHKAIGDQLICMFIDHGLLRKGEAESVMETFGREMNINLVKIDAKERFLSKLAGVSDPEKKRKIIGNEFVYTFDEEVKKLTSGEDIKWLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALGTELGLPDEMVWRQPFPGPGLGIRVLGDITEEKLEIVRDSDLILREEVAKAGLQKEIWQYFTCLTNMRSVGVMGDQRTYDYAVAIRAVTSIDGMTADWAKIPYEVLDVISNRIVNEVKHVNRVVYDITSKPPGTIEFE
>NZ_CP048837.1|WP_009587940.1|1257088_1257307_+|helix-turn-helix-domain-containing-protein
MISYKPFFETLKKKGITQYKLETEYGVSKGTVDNLRHNRSITLYTVDELCKILECEPWDIFEINNYESFEER
>NZ_CP048837.1|WP_009587960.1|1257338_1258199_+|sce7726-family-protein
MEYGKTNILNKVFTKNTLNKWISLEKSDIYAITIKRFVKDAEGKTNKELISDIYTKMKTDYRNEYYYKNTLLNKLLIGKHSVNTTSALTEVNINKSKADFVLINGKAVVYEIKTELDNLDRLECQIMDYYKAFNHVAVLTYEKNLKNVENIINNLNLPVGLYVLRRTGKIGTVFDPKPYMDALDFNVMFKILRKSEYEQLVLNFFGNLPVTTQFKYYSECKEMLSSIDLALFYNSFTKILKNRCIIEKEVLDRVPYELRFLVYFNKMKEESYKNLFNFLKEERGEG
>NZ_CP048837.1|WP_009587937.1|1258199_1259129_+|sce7725-family-protein
MYFPYLRGRQFELIAIREMIEKNLINDKVIPIIEPVKASSTFLKTIEVSKEHDKALAIIVNPKVGNFIKEISNLKNEKIKEKYYDLLDFSDRIIHTRIIDMKFQETIEFINANYNSKMAICLNNDDIAIFEKYFKGNDFLYNIIPDKTEFRRRIRENRVMIEDHFIKSERNVDYLDKDDFFSRDHLYYKEDGYLGFSDYSIIGNEYSETGFAPYAVAIHIIYFDEEKSLRVRHFVSDSNDDISDIAGKFKEAMYKLVKWNKTAKLDTYGIRKLEEFYSLESYPGLGTVKKLSIMHHLELMNSFLDGVEI
>NZ_CP048837.1|WP_009587814.1|1259125_1260217_+|RES-family-NAD+-phosphorylase
MIFCENCFQDAEVISIIRRQNFKGKCPICGKNNVYLYDTNNNYDLVSLFDDLISIFTPVSLLPTEYPKSEIKLLKTELKENWHIFGDIGESNIYKILIGICSDRYENNPELFDYPIGIAELYRNEKFESNLLLKSNTWEEFTESLKTTNRFHSHYINLELLKKFCTFIRKPYKTGELFYRCRIGDSDGFDIYSMSAPDSSKTVNGRANSKGIRCLYLADDIETTIHETRAGEYDYVTIGTFRLKKNIIVVDLKRINRISPFIEGLDAKEYALNKETLNKINFELGKTLRRSDSDLDYLPTQYISDFIKSIKHNNVNEYSGIEYNSVMYEKGYNLAIFDPELFECINTEVYRIENVTYHIHQIR
>NZ_CP048837.1|WP_008819215.1|1260638_1260854_-|hypothetical-protein
MIHCDTTDQYFLCRWILVNFEESAVRLELIAANQVRVYTSDGYMDIFMNLTGMVVFECHLYNDPYTLKKEA
>NZ_CP048837.1|WP_035303261.1|1261188_1261452_+|hypothetical-protein
MSITKYIRDQELFKTGLNISELIRKIIINYHSKYKDDINELKNKIKDAVKNETRNQQFNEDEYLNIAWKITKYLCQNQIVIDDEKKD

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Crispr_ID: NZ_CP048837_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048837_3

3938480-3938782

TypeV

Consensus_repeat	Method
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	PILER-CR
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	CRISPRCasFinder
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	CRT

4 spacers

The CRISPR arrays of NZ_CP048837_3

>merge|NZ_CP048837|3|3938480-3938782|PILER-CR,CRISPRCasFinder,CRT
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAATATGTCTTCTGTTGAATCAATAAGCTTAATTGTTGCGAGTCTAGCCTCCCTGAGGCTAGTGGATCTAAATGGTTTGTATATCTCCATTTTATACCCCCTTACCATGGTCTAGCCTCCCTGAGGCTAGTGGATCTAAATCACTTTCCAACAATCTAGGTGCGTATCATGTATGTCTAGCCTCCCTGAGGCTAGTGGATCTAAATTAAGCGTTGTGTTATAGTCAAATGCTCCCGTCGTTATGTCTAGCCTCCCTGAGGCTAGTGAATCTAAAT

>NZ_CP048837|3|2|3938480-3938782|PILER-CR
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	ATGTCTTCTGTTGAATCAATAAGCTTAATTGTTGCGA
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	GGTTTGTATATCTCCATTTTATACCCCCTTACCATG
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	CACTTTCCAACAATCTAGGTGCGTATCATGTAT
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	TAAGCGTTGTGTTATAGTCAAATGCTCCCGTCGTTAT
GTCTAGCCTCCCTGAGGCTAGTGAATCTAAAT

>NZ_CP048837|3|3|3938480-3938782|CRISPRCasFinder
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	ATGTCTTCTGTTGAATCAATAAGCTTAATTGTTGCGA
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	GGTTTGTATATCTCCATTTTATACCCCCTTACCATG
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	CACTTTCCAACAATCTAGGTGCGTATCATGTAT
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	TAAGCGTTGTGTTATAGTCAAATGCTCCCGTCGTTAT
GTCTAGCCTCCCTGAGGCTAGTGAATCTAAAT

>NZ_CP048837|3|2|3938480-3938782|CRT
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	ATGTCTTCTGTTGAATCAATAAGCTTAATTGTTGCGA
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	GGTTTGTATATCTCCATTTTATACCCCCTTACCATG
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	CACTTTCCAACAATCTAGGTGCGTATCATGTAT
GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	TAAGCGTTGTGTTATAGTCAAATGCTCCCGTCGTTAT
GTCTAGCCTCCCTGAGGCTAGTGAATCTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048837.1\|WP_008816426.1\|3940780_3941116_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225937
NZ_CP048837.1\|WP_008816430.1\|3934512_3935406_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP048837.1\|WP_008816434.1\|3930893_3931823_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240649
NZ_CP048837.1\|WP_008816420.1\|3950949_3952311_-\|Sapep-family-Mn(2+)-dependent-dipeptidase	unknown	unknown	gnl\|CDD\|349884
NZ_CP048837.1\|WP_008816422.1\|3948670_3949210_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048837.1\|WP_008816431.1\|3932775_3933636_-\|PTS-system-mannose/fructose/sorbose-family-transporter-subunit-IID	unknown	unknown	gnl\|CDD\|377079
NZ_CP048837.1\|WP_008816429.1\|3935819_3936665_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP048837.1\|WP_008816427.1\|3938892_3940767_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP048837.1\|WP_002606219.1\|3944594_3945668_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP048837.1\|WP_021420078.1\|3943734_3944595_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP048837.1\|WP_002606210.1\|3933665_3934487_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|377077
NZ_CP048837.1\|WP_021420076.1\|3945983_3948260_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP048837.1\|WP_008816421.1\|3949232_3950846_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|182245
NZ_CP048837.1\|WP_021420079.1\|3942731_3943442_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NZ_CP048837.1\|WP_008816435.1\|3930211_3930859_-\|bifunctional-2-keto-4-hydroxyglutarate-aldolase/2-keto-3-deoxy-6-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|180618
NZ_CP048837.1\|WP_021420073.1\|3952423_3953959_+\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP048837.1\|WP_008816436.1\|3929556_3930225_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319859
NZ_CP048837.1\|WP_008816433.1\|3931822_3932254_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|237978
NZ_CP048837.1\|WP_008816432.1\|3932250_3932757_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|377139
NZ_CP048837.1\|WP_008816428.1\|3936980_3938171_+\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350624

Protein	Function_ID	Function_description	E-value
NZ_CP048837.1\|WP_008816426.1\|3940780_3941116_-\|hypothetical-protein	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	0.000568646
NZ_CP048837.1\|WP_008816430.1\|3934512_3935406_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	2.60872e-168
NZ_CP048837.1\|WP_008816434.1\|3930893_3931823_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|240649	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	4.08623e-140
NZ_CP048837.1\|WP_008816420.1\|3950949_3952311_-\|Sapep-family-Mn(2+)-dependent-dipeptidase	gnl\|CDD\|349884	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides. Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminus, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Also included is the Staphylococcus aureus metallopeptidase, Sapep, a Mn(2+)-dependent dipeptidase where large interdomain movements could potentially regulate the activity of this enzyme.	3.96433e-152
NZ_CP048837.1\|WP_008816431.1\|3932775_3933636_-\|PTS-system-mannose/fructose/sorbose-family-transporter-subunit-IID	gnl\|CDD\|377079	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component.	1.56982e-97
NZ_CP048837.1\|WP_008816429.1\|3935819_3936665_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	6.4892e-72
NZ_CP048837.1\|WP_008816427.1\|3938892_3940767_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP048837.1\|WP_002606219.1\|3944594_3945668_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP048837.1\|WP_021420078.1\|3943734_3944595_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	7.65173e-96
NZ_CP048837.1\|WP_002606210.1\|3933665_3934487_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|377077	pfam03609, EII-Sor, PTS system sorbose-specific iic component.	7.75548e-58
NZ_CP048837.1\|WP_021420076.1\|3945983_3948260_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	3.50384e-10
NZ_CP048837.1\|WP_008816421.1\|3949232_3950846_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|182245	PRK10110, PRK10110, PTS maltose transporter subunit IICB.	1.43866e-94
NZ_CP048837.1\|WP_021420079.1\|3942731_3943442_-\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.4094e-75
NZ_CP048837.1\|WP_008816435.1\|3930211_3930859_-\|bifunctional-2-keto-4-hydroxyglutarate-aldolase/2-keto-3-deoxy-6-phosphogluconate-aldolase	gnl\|CDD\|180618	PRK06552, PRK06552, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	2.86448e-94
NZ_CP048837.1\|WP_021420073.1\|3952423_3953959_+\|transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.38511e-35
NZ_CP048837.1\|WP_008816436.1\|3929556_3930225_-\|HAD-IA-family-hydrolase	gnl\|CDD\|319859	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW. This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.19716e-35
NZ_CP048837.1\|WP_008816433.1\|3931822_3932254_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|237978	cd00006, PTS_IIA_man, PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.	8.9707e-31
NZ_CP048837.1\|WP_008816432.1\|3932250_3932757_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|377139	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component.	2.6745e-52
NZ_CP048837.1\|WP_008816428.1\|3936980_3938171_+\|M15-family-metallopeptidase	gnl\|CDD\|350624	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins. This L,D-carboxypeptidase family includes LdcB LD-Carboxypeptidase from Streptococcus pneumoniae, Bacillus anthracis, and Bacillus subtilis, and L,D-carboxypeptidase DacB from Streptococcus pneumonia and Lactococcus lactis. These enzymes are active against cell-wall-derived tetrapeptides and synthetic tetrapeptides lacking the sugar moiety but are inactive against tetrapeptides terminating in L-alanine. L,D-carboxypeptidase DacB plays a key role in the remodeling of S. pneumoniae peptidoglycan during cell division. It adopts a zinc-dependent carboxypeptidase fold and acts as an L,D-carboxypeptidase towards the tetrapeptide L-Ala-D-iGln-L-Lys-D-Ala of the peptidoglycan stem. This family also includes vanY D-Ala-D-Ala carboxypeptidase which is vancomycin-inducible and penicillin-resistant. VanY hydrolyzes depsipeptide- and D-alanyl-D-alanine-containing peptidoglycan precursors; it is insensitive to beta-lactams. All these enzymes belong to the MEROPS family M15 subfamily B.	5.9239e-69

>NZ_CP048837.1|WP_008816428.1|3936980_3938171_+|M15-family-metallopeptidase
MKRRKRVKRKVKIAAVIVLLICIAVSLIIINRTRIQLAFKGYDRDERNIIMTLSAQEIDEYVSFASDIDISKWNRMKNNKHYLDYELYAENGADKKEAVAYVDQFYADYYQALRSQGFDQPTLRTLMKKTSLADFKTIKDKKLTWKQIQPYIHINGRILEDVPDYLKSGLKPLEAVMRISYASINSSAPITIQRSYSLDDPKHLLLMIKRGFYVPKTYVPENLTAVQIPVAHNDGNNLMRKDAADALESMYKDAKKQGLILAINSAYRPYNEQQQVYDEYMVTYGVQTAVKLVAEPGCSEHQLGLSVDLTSQSVMDGTYAVFGDTPEYQWVIKNAHKYGFILRYPENKTNITGTANEPWHFRYVGTEAATEIYRKNLCLEEYTLQHGFSYPVSIKR
>NZ_CP048837.1|WP_008816429.1|3935819_3936665_+|MurR/RpiR-family-transcriptional-regulator
MSMEFAGRVKGHYYGLSKTEKKIADYLLEHATTARHLSIQELAEDIDVSMSAISRFTKKVGYSNYQEMRLQLSEPFDHLSESFFASLDENDTAMNIAKATFQSGITSLSSTMAVLNQDSLEQAVHLLGRAKTCGLFGMGASSVIVHSAYQRFLRTSLNCQFSLDYHMQLMYAGRLSEKDCALIVSHTGRNKDVLRIVDILKEHGVPIISVTSNAASPLARKSDVFLFSISEETKFRPEAISSSVSQLMLMDTLFTLYAIKEDNDPEYFNRIRRIVNTTRIP
>NZ_CP048837.1|WP_008816430.1|3934512_3935406_-|decarboxylating-6-phosphogluconate-dehydrogenase
METGIIGLGKMGLHIAMNMQSSGIRAYGYDIQTGPRKQAKAKGIPVVQTLQELIAALQKPRIIWLMLPAGDITESMVHQLAELLEEGDYVIDGGNSFYRDSLRNYEFLKKKKIHFYDAGTSGGIRGALEGANFMIGGEREHFAVIEELFQRIASDQGYLYAGDAGSGHYLKMVHNGIEYGMMQAIGEGFELLQHSPYPYDNAQVARLWNHGSVIRSWLMKLAEEAFREDEKLDAVKGIMYASGEGQWTVEEAMRCNVSVPVISTALMMRYRSLYEDTFTGKVVASLRKGFGGHKTAE
>NZ_CP048837.1|WP_002606210.1|3933665_3934487_-|PTS-sugar-transporter-subunit-IIC
MQITIVQAVVISIWIGLVMSRSFLGGATTTLRFTPMMTGLIVGLVFGRVAEAMIITAAIQLIYMGVFSPGGQMPSEPAIAAAIAVPVALLGDMKPEAAIAVAVPVGLLGSYLYQFRFFVNTFVMQKFTDKYAKSANDKMLTISIIFIPILVAFLIFVPFMFVSLYYGAPVIADIVQSTSGSILFHILEVIGGGLASIGIAVTIYVIGKKNYIAFFLLAYFVAVVLKSLNITMITYAIIGTIIAFIFVLSKTEAVSMFSASGINTADNEEEDDY
>NZ_CP048837.1|WP_008816431.1|3932775_3933636_-|PTS-system-mannose/fructose/sorbose-family-transporter-subunit-IID
MSEMLQKSVNLEPEAITKRDVSLAWLRFYFANEIPHSFDKYIAPSLMWALMPILKKLYKDKKDLSEAYQRHLLFFNTQISWGGGTITGIMASLEAARAQEVYMDTPVTIDDDLIYNTKAGLMGALAGIGDSIDSGTIQYIFIAIALPWAQQGNAIGALFPFVMFSLYQLVIGYYFAQLGFKLGRTAATEVVGTKMQIIIEALSILGLFMMGILAANYVKVSSTLAFTLSGKKFVIQEILDGVMPGILPLLTVGLVYFYFTKKGLNVTKALIGLTIILGVLAGFGIL
>NZ_CP048837.1|WP_008816432.1|3932250_3932757_-|PTS-sugar-transporter-subunit-IIB
MGKVVLARVDARLIHGQVMTSLSKSAGATAIFVADDPAAHDPFTKNIILGAGSRTGLKVRVLKEDGAVRYWNDRQYDDYHVILLTKSIEVMADIIRGGVPMKELNLGGIPQKPGLTSIIKEVAINKEQLKILQELEKDYGIDVYFQAIPSSRRVSLKEAARLFEEHSA
>NZ_CP048837.1|WP_008816433.1|3931822_3932254_-|PTS-sugar-transporter-subunit-IIA
MIGMLLVSHGRMAEGMLDSLELIMGSCDRMHTVSLCAGEDFESFRVKVMEAIRQLDSGDGVLVFVDLYGASPFNASVYAVARMAQEGISVRVLAGMNLAMLLETAAMRASSSLQELVAIAEAAGRDGISEPLVVKEEENGEDY
>NZ_CP048837.1|WP_008816434.1|3930893_3931823_-|phosphoglycerate-dehydrogenase
MKKVLITPRSFGKYNREELIEKLLQHGIEPVFNPYGTIMNEQQMRSALQDMDGLIVGVDPVSEEALRQAPRLRAIAKYGVGIDNIACAYAQENDIAISRTVNANANAVADYAMTLLMSVARRVVEIDEGCHHNDWSKKEALDIYGKTIGVLGLGAIGKGVVQRASGFDMRIYGYDIMRDDAFLNKYNVCFTDVDTIIRECDFISLHLPLTQETRHILNKENLKRAKSNLIIVNTARGGLLDEDALYELLKERKLYGLGLDVFEQEPPQNSKLLTLPNVIVSSHTAASTQEAINAMSRMAVENLICSLEA
>NZ_CP048837.1|WP_008816435.1|3930211_3930859_-|bifunctional-2-keto-4-hydroxyglutarate-aldolase/2-keto-3-deoxy-6-phosphogluconate-aldolase
MDKTTLLAELKKQRLVAVIRGKDEEEVTNIVDAVYRGGIHFMEITYTIPQAEQVIAHLCKAYEHCDDIIIGAGTCLDIVSARMAISAGAQFVVCPHLDTEVMKLCNSYRVPCFPGAANVKDMLECLRYGADVIKLFPGDTFGPKAVRAFKGPLPQADFMPTGGVSAANLTEWLDNGAVAVGTGGSLTKGAKAGDFEAVRLEAEKLVNIVRAYDQR
>NZ_CP048837.1|WP_008816436.1|3929556_3930225_-|HAD-IA-family-hydrolase
MISDKTELLIFDMDGLLVDTERVYLEGWLYALNKQQVAIAEAVVKSWVGKSFHDTHAYLMQVCHEEALCARIRKDREQYIYQCLENGTLSAMPYARDALQAAREYGYRTGLATSSLKKRSTAILAHLGLLSYLDIPVFADDVTKLKPHPDLYLEVLRRAQVPCEHAAAFEDSLTGVQAAVAAGIQTVRIPDHRFIDVEDTASDVVCAENLSCVRAMLEQLNT
>NZ_CP048837.1|WP_008816427.1|3938892_3940767_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MVDVIVIGGGHAGVEAALACARLKKTTILYSMHIDMIASMPCNPSVGGPAKGIVVREIDALGGEMGKAADATALQFKMLNTTKGPGVQCLRVQSDKLEYKRYMQDKLLQQEHLEIREMCVEEVLAKDGRISGVRQKDGTVVNCRALIMTTGTFMSSTVLVGHTSTLSGPEDEPTTENLSQSLRNLGIETFRLKTGTPARVRTASIDFSKTAVQPGTDEFICFSEDTKEIRPFDQQAVCYLTYTTAKTHDIINSNLKRSAMYSGLVKGVGPRYCPSIEDKLVRFADKERHQIFLEPESESLDTTYVQGFSTSMPYDVQEAMLHSLPGLENCTIEKYAYAIEYDAIDPLQCKPTLENKIIENLYTAGQINGTSGYEEAAAQGLMAGINAVRKLDHKEPLILHRDEAYIGVMIDDLVTKGTKEPYRLLTSRAEYRLLLRHDNADARLSEYGYETGLISDERYARYQKKMQNIEEMISYLASVRFTPKSTVNGLLERLGLDVLKEGISAAELLKRPGITIALLEPYLEREFDPAIAKLVEIEIRYEGYIKKAKRDAEHLRAMDKVCLPERFDYNQVVNLSLEARQKLNKVQPLTMGQASRISGVNPADIAVLAVFMEQLKRTYEKKSG
>NZ_CP048837.1|WP_008816426.1|3940780_3941116_-|hypothetical-protein
MKYNNSRLSLKQRWLSFALCILIALLAGIFALYSYIEAYPFWTSACSLLVCAIMLFIAIFLLRLNMRRKRIQREFVSEFDKEIRKKEHMCPHCGALMGSGNTCAKCGYKGH
>NZ_CP048837.1|WP_021420079.1|3942731_3943442_-|pirin-family-protein
MMKKIDHRNMGRSCLGWLDSWFHFSFAEYYNPKNMHYGVLRVVNDDTIQPHTGFETHPHRDMEIITYVIEGELTHADSMQNVSTLKRGEIQYMSAGTGVFHSEKNDGEEILRLLQIWILPDRSGYTPQYGEARIPWEARENRLLHIVSGHKNTAYVKIHQDMDIYVSALSSRKELDIPVEPSRQVYLIVIEGEVECNDICLQLRDAVEIDESFCIKTLQGAHVILFDMAREVYFQE
>NZ_CP048837.1|WP_021420078.1|3943734_3944595_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MSSYHSVLKNAQARMEEAGYGEQSALLYMLELTNKEAHNLYMEFDEEMQPELEELYEEGIQRLLTGIPLGHVLGFEWFYGYRFTVNEDVLIPRPETEELVANILAAYDEHFSSQDNVMAVDIGTGSGAIAVSLKKEEPNLHMMATDISEQAVAVAKKNADDNEAIVNFMVGDMLQPLIDRNLKVDILISNPPYIPREEEMEHSVVDYEPHVALFGGDDGLKFYRIIFENAAKVLKERAMMAFEMGYNQKEALSEEAKKYFPNARIEVLKDMSGKNRMLFVYLNIEH
>NZ_CP048837.1|WP_002606219.1|3944594_3945668_-|peptide-chain-release-factor-1
MSVMIERLEGMVNRYHEINEMMMSPEIVTDSRMLAKLGREQADLTQVVETYTEYKNSVSALEDAKALLLEDDKEIKEMAKMEIEELEPKIEEYLEKLEILLIPKDPNDSHNAIVEIRGAAGGDEGNIFAGDLYRMYSKFAESQGWKIEIVEMDDCEAGGFSLVSFMVKGDGVYGKLKFESGSHRVQRVPKTESQGRIHTSTATVLVTPEIEPEDFDIDMNDLEMETMRASGAGGQHINKTDSAVRIVHKPTGITVKCQDGRSQHENRATALMTIRSRVYEEHQRKLEEEQGIERRNKIGTGDRAEKIRTYNYPQNRVTDHRIGYTVNQLDRIMEGRMQDLLDALLSADQQAKLAGEK
>NZ_CP048837.1|WP_021420076.1|3945983_3948260_-|helix-turn-helix-transcriptional-regulator
MRQIARKQFNSMLKHMVSYPLICIYGPDGFGKTSAVAAFLHNRKERCCWIHMHKKNRKQLGEIFEKIIDSGSYDIIILDQYRNHILDRHIMKVYERREHSCRIILLASGIPSFFNSELYRWTLLIPTTMLRFQFADIQKLAAVNQICIDEREVREILRVTCGWTIGVHALLEEYGAVRTLNPDLQLYPLFDVYIYRQLNQAQRQSLAVLSVPEHFNIQLIEALCVDTGIMKILTWMMNFHWFVQVDRITRLFTYSPVFREFLYDKFLMYEKNPSHLYRKIADYYESSGDILNCLRQLYLLKDYKKILQLLELYESKNFADYDTELMRNIYQMVPMELYVDYPYAWLHAIMDNFNNLQDIFYGKQLLEGFLHALHSGSLHEDEKLLQGEVELILAYSRYNNLHEMSRYFKRSKTLLRNQTSRISNPEIISTFGSPHNLFLYHRKPGDIQRIVNILHKDLHYYFEITNNSNGGLMEQASAEQQLESARFAESIHTAWEAYYIAEHYRQKWICVSSLFTIGRAAYHLRDHTLLQFVHQQLAVLREKVILPPLLSEIDLAQAYLYILSGEYEKVAEWIQEGRKGNLLQGATLYSSIVYGMYLIKIRNYAKLRVVASLLESQAHERKQMFGTIYALLFYCILLEEENHQEQIVEAVHHIIEICQPDGIMTVILKIGKDVFLSCSDSWRWRKLKQLLEEHRDYNSYGLTERELELVNYVLKGYSRREMAEASGLKENTVASYMKRLYRKIKVHSRKELKELFMK
>NZ_CP048837.1|WP_008816422.1|3948670_3949210_-|hypothetical-protein
MATIAGGVSMKRRDLIRQKNKLAKTGGFRYIRYAKYACVAMVVLFLVYVGGLSNLSGKSYEDLISKSPIVITGFMICTANLYVWYVLKHFLKDLAVPQHVESIRVNLLLMTIGQFILMNFISAVLMMLSLRKYFQWNTFSVKNALKEIRKEGQLSVLIVTALVLILFISLVFGIYFSIR
>NZ_CP048837.1|WP_008816421.1|3949232_3950846_-|PTS-transporter-subunit-EIIC
MKNIQAKLQTFAGAMMVPIILLVLVGFFVGIGSAFTNYILPEGNILYNLFTMITNLGFMFMNNLQLWFAVAIAFTLAKKEKGWAAFAGLILFFCFMRGIEGWAALEGWTAETTTVDALVKSGYTQQAALNFNALWSSSLGIYSYNMGIFSGIVTGLIAAGLHNKFVDTKLPAMFGFFAGTKFVIIMVALASIPLAIAFYYVWPYVAGALQSITGFIRTSGLLGTFVFGTLDKMLLPFGIHHLIAFPIEYTKVGGTMMIDGVMYEGVKNIINGQAASASATGYITRNFTNGRLLFQLAGLPGAAFAMYRCAKPENKKKVASLLVPSVFTLAMVGISEPIEYTFLFVAPALYWLVYAPLCGLCYVAAEITNISINGTALFFMIPNLFQPQKVHAMSALWLLPVTFIVYYFAFKFAITKFNLKTPGRDDEGEIKLMSKKEYNEIKNSGKDEANVSSAPEDALEVRIIEALGGADNIETVTCCASRLRVTVKDDSLIAPDTSWKNYLEAIGVVRGKNSVQVIYGVRVVNITTKVKDYLHLD
>NZ_CP048837.1|WP_008816420.1|3950949_3952311_-|Sapep-family-Mn(2+)-dependent-dipeptidase
MKTIYDTGKRTSELLQDLKQLVEIPSVRDERTAGSSAPFGKEIRNAMDVFLQIAQREGFSVHDFDGYAVDAQLGEGDDYIGVLAHLDVVEAGERSHWHGDPFQMQEIDGMLYGRGVNDDKGPLLAALYAMARIRQEGRTLYHPIRLIAGGAEETTWECMEHYFKHNPQPIFGFSPDGNFPIVNGEKGILQVRFLLNADSDISLHCKERLHIVCDDLQVIVPKGSDVSFVERTNLIEVMQDGIKITYRGVRALSRNPQRGDNAIFKFVKDFHGHLDQAGSLYPMVNMIYENFLDDFYGKKSGLYHEDAAMGCGSVCLMSLNTQDGQLELCVDVRYVRSTDEQSLLHTLRKTAQHYGCELEVLRHKRLLYVAEDSTLIQSLKTAYHRVMKEDAAVFTKGGASYARVLEHGVAFGATFPDEDPRPHMPNECMPVKSLLKASDIYYEALVELACTKR
>NZ_CP048837.1|WP_021420073.1|3952423_3953959_+|transcription-antiterminator
MNKRIMKIVDVLLKQDSYITIDKISEELAVSNKTIRNDLQIVDQYLEENNLKLIKKTGVGIRIDGKVRDKLHVLESVREKNKTLADYSPQARKIFIGMQLSAFDSCRIYELSEQLFVSRATIHKDILSLTKDLETFKIALHRKNNNGISMEGKEKNIRNFLLELMLRDNGYQMFIDIIRRDDYRCDGSYVFPGLEVTDDEVKDFTGCILRWGNPYINSLTFPSMVLVLLRAFVTYLRIQDRHIVHLSTSFIEDLRKEPFYKEARELCDRLANHYRLQIPDVEIRYLQVYFLALQNSRDLSEQEQQEARMLSDALLTSWSEQLHLPFDRDEALCQSVYDHLCPAIIRFRHGIPNENPLMQEIHTLYERTFQVARNSVSVIEEYFHCNVSDDEVGFLALHLAASLENMKQPLKTILVAHGGVGAGNLLRRKLSAQIPEIDIISQETFFSIYECDISDIDLIISTLELNLHTDVTILQVNSLLHDYDILRLKDVIREYYKVKNDPYNFKSAAQE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048837_2	2.8\|1250967\|35\|NZ_CP048837\|CRISPRCasFinder,CRT,PILER-CR	1250967-1251001	35	MN694403	Marine virus AFVG_250M373, complete genome	34969-35003	9	0.743
NZ_CP048837_2	2.8\|1250967\|35\|NZ_CP048837\|CRISPRCasFinder,CRT,PILER-CR	1250967-1251001	35	MN694748	Marine virus AFVG_250M355, complete genome	33367-33401	10	0.714
NZ_CP048837_2	2.8\|1250967\|35\|NZ_CP048837\|CRISPRCasFinder,CRT,PILER-CR	1250967-1251001	35	MN694211	Marine virus AFVG_250M746, complete genome	33711-33745	10	0.714

1. spacer 2.8|1250967|35|NZ_CP048837|CRISPRCasFinder,CRT,PILER-CR matches to MN694403 (Marine virus AFVG_250M373, complete genome) position: , mismatch: 9, identity: 0.743

ttgacattaaatcattcttctgttataattaagga	CRISPR spacer
tggtaattaaataatttttctgttataattgttgt	Protospacer
* *  ******* ***.*************.  *

2. spacer 2.8|1250967|35|NZ_CP048837|CRISPRCasFinder,CRT,PILER-CR matches to MN694748 (Marine virus AFVG_250M355, complete genome) position: , mismatch: 10, identity: 0.714

ttgacattaaatcattcttctgttataattaagga	CRISPR spacer
tggtaattaaataatttttctgttataattgttct	Protospacer
* *  ******* ***.*************.

3. spacer 2.8|1250967|35|NZ_CP048837|CRISPRCasFinder,CRT,PILER-CR matches to MN694211 (Marine virus AFVG_250M746, complete genome) position: , mismatch: 10, identity: 0.714

ttgacattaaatcattcttctgttataattaagga	CRISPR spacer
tggtaattaaataatttttctgttataattgttct	Protospacer
* *  ******* ***.*************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16609 : 79826

Paenibacillus_phage(26.67%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167871276.1\|16609_17314_+\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	1.6e-39	42.5
WP_167871277.1\|17490_18252_+\|transposase	IS3 family transposase	A0A0C5AC89	Paenibacillus_phage	3.2e-49	48.9
WP_021421091.1\|18521_19592_-	SIS domain-containing protein	NA	NA	NA	NA
WP_021421090.1\|19610_20333_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_021421089.1\|20335_21046_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_021421088.1\|21102_21936_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_021421087.1\|22003_22831_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_021421086.1\|22820_23597_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_036745434.1\|23621_24092_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_036745432.1\|24112_24526_-	hypothetical protein	NA	NA	NA	NA
WP_021421084.1\|24670_25342_-	HAD family phosphatase	NA	NA	NA	NA
WP_021421083.1\|25408_26443_-	SIS domain-containing protein	NA	NA	NA	NA
WP_167871278.1\|26759_27464_+\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	1.2e-39	42.9
WP_167871279.1\|27640_28402_+\|transposase	IS3 family transposase	A0A0C5AC89	Paenibacillus_phage	8.4e-50	48.9
WP_035303967.1\|29349_29601_-	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_009270083.1\|29597_30155_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_008816032.1\|30214_30988_+	NAD kinase	NA	NA	NA	NA
WP_009270084.1\|31255_32476_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_021420135.1\|32700_35232_+	DNA mismatch repair protein MutS	A0A2P0VN50	Tetraselmis_virus	3.7e-41	25.6
WP_021420136.1\|35292_37380_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	8.2e-55	37.4
WP_008816028.1\|37512_38424_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_009588980.1\|38425_39166_+\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_009589002.1\|39155_39935_+	nitroreductase	NA	NA	NA	NA
WP_008816026.1\|39973_40819_+	hypothetical protein	NA	NA	NA	NA
WP_008816025.1\|41138_41477_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_009270089.1\|41454_42015_+	DUF2812 domain-containing protein	NA	NA	NA	NA
WP_002606703.1\|42196_42847_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_008816023.1\|43583_44216_+	dTMP kinase	M1PSC7	Streptococcus_phage	4.1e-50	47.5
WP_008816022.1\|44208_45186_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_008816021.1\|45182_46253_+	hypothetical protein	NA	NA	NA	NA
WP_002606707.1\|46262_47120_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	5.0e-59	46.2
WP_021420139.1\|47229_47925_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_008816019.1\|47989_48670_+	response regulator transcription factor	W8CYM9	Bacillus_phage	7.8e-47	42.9
WP_021420140.1\|48653_50297_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.2e-30	28.7
WP_021420142.1\|50695_53041_+	anaerobic ribonucleoside triphosphate reductase	A0A0A8WEK0	Clostridium_phage	6.6e-162	42.5
WP_021420143.1\|53033_53582_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0A8WJI9	Clostridium_phage	8.8e-33	44.2
WP_021420144.1\|54063_54552_+	helix-turn-helix transcriptional regulator	Q38607	Lactococcus_phage	1.3e-06	39.7
WP_036744980.1\|54553_54805_+	hypothetical protein	NA	NA	NA	NA
WP_021420146.1\|54962_55406_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_008816012.1\|55409_56447_-	PTS fructose transporter subunit IIC	NA	NA	NA	NA
WP_002606723.1\|56467_56782_-	PTS fructose transporter subunit IIB	NA	NA	NA	NA
WP_021420147.1\|56796_59439_-	glycosyl hydrolase	NA	NA	NA	NA
WP_008816008.1\|59773_61717_+	PTS transporter subunit EIIA	NA	NA	NA	NA
WP_008816007.1\|61781_62150_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_008816006.1\|62247_64023_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.4e-57	30.8
WP_009270095.1\|64854_65622_+	nucleoside/nucleotide kinase family protein	NA	NA	NA	NA
WP_009270096.1\|65575_66340_-	YwaF family protein	NA	NA	NA	NA
WP_009270097.1\|66667_67609_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_008818051.1\|67620_68469_-	prephenate dehydrogenase	NA	NA	NA	NA
WP_009270098.1\|68465_69728_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_008818053.1\|69728_70745_-	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA
WP_009270099.1\|70789_71887_-	chorismate synthase	NA	NA	NA	NA
WP_002606736.1\|71883_72897_-	3-dehydroquinate synthase	E5ERI4	Ostreococcus_lucimarinus_virus	1.3e-29	33.2
WP_002606737.1\|73354_74440_+	chorismate mutase	NA	NA	NA	NA
WP_008818055.1\|74442_75678_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_008818056.1\|76281_77205_+	DUF1848 domain-containing protein	NA	NA	NA	NA
WP_009588965.1\|77582_77933_+	hypothetical protein	NA	NA	NA	NA
WP_021420154.1\|78380_79826_-\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

902725 : 913017

Streptococcus_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002323345.1\|902725_903229_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	7.5e-55	60.8
WP_021419667.1\|903403_904069_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-19	29.4
WP_021419666.1\|904157_905072_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-38	42.1
WP_021419665.1\|905064_905832_+	ABC-2 transporter family protein	NA	NA	NA	NA
WP_079747650.1\|905866_906739_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	5.2e-11	25.3
WP_003061368.1\|906973_907372_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	4.1e-48	73.0
WP_021419663.1\|907349_909800_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	76.3
WP_131040423.1\|909799_912013_+	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	1.9e-190	60.8
WP_002606089.1\|912009_913017_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	7.8e-136	70.5

DBSCAN-SWA_3

929265 : 937021

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008690020.1\|929265_930366_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.3e-47	37.8
WP_008394622.1\|930350_930986_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.9e-44	46.0
WP_008394621.1\|931005_932211_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.4e-102	47.7
WP_008394619.1\|932211_932679_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.3e-40	53.0
WP_021419907.1\|933087_934302_+	helix-turn-helix domain-containing protein	A0A1S5SEX3	Streptococcus_phage	9.4e-128	54.8
WP_008787514.1\|934807_934996_-	hypothetical protein	NA	NA	NA	NA
WP_008394616.1\|935086_935296_+	hypothetical protein	NA	NA	NA	NA
WP_008394611.1\|935407_937021_+	DUF4368 domain-containing protein	W8CYE4	Bacillus_phage	1.1e-22	25.1

DBSCAN-SWA_4

2777135 : 2887081

100

Erysipelothrix_phage(40.48%)

transposase,integrase,head,portal,holin,capsid,tail,protease,terminase

attL 2771459:2771482|attR 2784175:2784198

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2771459:2771482	attL	NA	NA	NA	NA
WP_008817704.1\|2777135_2777594_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_008817706.1\|2777784_2778216_-	hypothetical protein	NA	NA	NA	NA
WP_008817707.1\|2778234_2778861_-	hypothetical protein	A0A0X8WPC5	Ralstonia_phage	6.2e-06	50.0
WP_008817708.1\|2778878_2779520_-	hypothetical protein	NA	NA	NA	NA
WP_148558595.1\|2779531_2780896_-	dockerin	NA	NA	NA	NA
WP_008817711.1\|2782888_2783995_-\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	4.4e-31	30.6
WP_009270750.1\|2785011_2785371_-	hypothetical protein	NA	NA	NA	NA
2784175:2784198	attR	NA	NA	NA	NA
WP_009588252.1\|2785694_2785886_+	hypothetical protein	NA	NA	NA	NA
WP_008817713.1\|2785882_2787235_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_008817714.1\|2787355_2788018_-	V-type ATP synthase subunit D	NA	NA	NA	NA
WP_008817715.1\|2788020_2789463_-	V-type ATP synthase subunit B	NA	NA	NA	NA
WP_008817716.1\|2789475_2791227_-	V-type ATP synthase subunit A	NA	NA	NA	NA
WP_009270752.1\|2791261_2791858_-	hypothetical protein	NA	NA	NA	NA
WP_008817718.1\|2791868_2792177_-	hypothetical protein	NA	NA	NA	NA
WP_002609959.1\|2792195_2792639_-	hypothetical protein	NA	NA	NA	NA
WP_008817719.1\|2792653_2794576_-	V-type ATP synthase subunit I	NA	NA	NA	NA
WP_008817720.1\|2794590_2795637_-	V-type ATPase subunit	NA	NA	NA	NA
WP_008817721.1\|2795676_2795988_-	hypothetical protein	NA	NA	NA	NA
WP_008817722.1\|2796785_2798042_-	cation:proton antiporter	NA	NA	NA	NA
WP_021420042.1\|2798456_2799410_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.4e-09	23.7
WP_008817724.1\|2799618_2801964_+	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_008817725.1\|2802272_2802527_-	hypothetical protein	NA	NA	NA	NA
WP_002609938.1\|2802771_2803962_-	phosphopentomutase	NA	NA	NA	NA
WP_002609936.1\|2804010_2804727_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_008817726.1\|2804868_2805570_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_008817727.1\|2805570_2806215_-	HAD family hydrolase	NA	NA	NA	NA
WP_079747663.1\|2806458_2806533_-	hypothetical protein	NA	NA	NA	NA
WP_009588251.1\|2806921_2807161_-	DUF4143 domain-containing protein	NA	NA	NA	NA
WP_009270757.1\|2808227_2808533_-	DUF1648 domain-containing protein	NA	NA	NA	NA
WP_036744947.1\|2809967_2811020_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	9.4e-92	54.1
WP_021420036.1\|2811016_2812054_-	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	NA	NA	NA	NA
WP_021420035.1\|2812050_2814537_-	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	6.0e-20	28.9
WP_021420034.1\|2814560_2817110_-	DUF45 domain-containing protein	E4ZFJ9	Streptococcus_phage	2.5e-82	31.1
WP_021420033.1\|2817113_2820254_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	3.4e-60	28.0
WP_021420032.1\|2820268_2821495_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_021420031.1\|2821488_2824158_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.3e-64	34.4
WP_004851913.1\|2824193_2824388_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	9.7e-11	47.4
WP_021420029.1\|2824937_2825456_+	hypothetical protein	NA	NA	NA	NA
WP_021420028.1\|2825745_2826066_+	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	2.0e-08	39.3
WP_021420027.1\|2826067_2827207_+	DUF2800 domain-containing protein	A0A1X9I6D8	Streptococcus_phage	3.3e-122	57.6
WP_036744945.1\|2827199_2827772_+	DUF2815 family protein	Q6DMW3	Streptococcus_phage	2.0e-75	75.1
WP_021420024.1\|2828040_2828226_+	hypothetical protein	NA	NA	NA	NA
WP_021420023.1\|2828280_2830221_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	3.9e-277	70.9
WP_021420022.1\|2830371_2830791_+	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	6.3e-39	53.9
WP_021420021.1\|2830794_2831124_+	hypothetical protein	NA	NA	NA	NA
WP_021420020.1\|2831123_2833397_+	phage/plasmid primase P4 family C-terminal domain protein	A0A1X9I6B6	Streptococcus_phage	5.2e-196	47.9
WP_008817758.1\|2833536_2833818_+	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	4.1e-26	60.0
WP_021420019.1\|2833798_2835142_+	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	2.1e-160	70.3
WP_008817760.1\|2835208_2835628_+	hypothetical protein	NA	NA	NA	NA
WP_036744943.1\|2835751_2836111_+	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	1.6e-38	60.7
WP_021420016.1\|2836928_2838179_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	1.3e-172	69.5
WP_021420015.1\|2838297_2838984_+	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	1.1e-51	51.8
WP_036744942.1\|2838967_2839198_+	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	2.2e-22	64.8
WP_021420014.1\|2839321_2839690_+	hypothetical protein	NA	NA	NA	NA
WP_021420013.1\|2839693_2839936_+	hypothetical protein	A0A2K5B284	Erysipelothrix_phage	1.2e-13	47.5
WP_036744940.1\|2840039_2841647_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	3.3e-269	84.0
WP_036744939.1\|2841688_2842018_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_021420010.1\|2842014_2842320_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_021420009.1\|2842441_2843812_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	5.2e-183	75.3
WP_153903700.1\|2843696_2844440_+\|protease	Clp protease ClpP	A0A2K5B288	Erysipelothrix_phage	9.7e-67	58.1
WP_021420007.1\|2844455_2845640_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	1.2e-103	50.5
WP_021420006.1\|2845705_2845978_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B0RXK2	Streptococcus_phage	2.0e-14	51.1
WP_021420005.1\|2845977_2846310_+\|head	phage head closure protein	NA	NA	NA	NA
WP_021420004.1\|2846311_2846695_+	HK97 gp10 family phage protein	Q9AZY1	Lactococcus_phage	4.6e-12	36.8
WP_021420003.1\|2846687_2847005_+	hypothetical protein	A6XMK2	Bacillus_virus	3.0e-17	45.5
WP_008817782.1\|2847010_2847583_+\|tail	tail protein	A0A0U4JWV5	Exiguobacterium_phage	7.5e-43	47.6
WP_008817783.1\|2847597_2847972_+	hypothetical protein	NA	NA	NA	NA
WP_021420001.1\|2851296_2851947_+	hypothetical protein	NA	NA	NA	NA
WP_021420000.1\|2851943_2853665_+	phage protein	A0A1X9IGI5	Lactococcus_phage	6.0e-27	28.0
WP_021419999.1\|2853679_2855575_+	hypothetical protein	A0A097PAT0	Streptococcus_pyogenes_phage	2.8e-46	32.6
WP_009587688.1\|2855645_2856059_+\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	1.1e-51	72.1
WP_021419998.1\|2856060_2857014_+	amidase	H7BV89	unidentified_phage	3.8e-92	56.9
WP_036744938.1\|2857140_2857362_+	hypothetical protein	NA	NA	NA	NA
WP_021419997.1\|2857416_2858982_+	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	2.1e-140	49.1
WP_021419995.1\|2859309_2860878_+	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	1.5e-154	55.6
WP_021419994.1\|2860942_2861944_-	caspase family protein	NA	NA	NA	NA
WP_021419993.1\|2861933_2862134_-	hypothetical protein	NA	NA	NA	NA
WP_021419992.1\|2862157_2863000_-	hypothetical protein	NA	NA	NA	NA
WP_021419991.1\|2863275_2864640_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	2.7e-78	37.5
WP_008817800.1\|2864626_2865244_-	HAD family phosphatase	NA	NA	NA	NA
WP_021419990.1\|2865540_2866455_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_021419989.1\|2866675_2867482_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_008817803.1\|2867510_2869892_-	glycyl radical protein	A0A1S6UAD4	Serratia_phage	3.3e-07	50.9
WP_009588237.1\|2869895_2870810_-	glycyl-radical enzyme activating protein	NA	NA	NA	NA
WP_008817805.1\|2870806_2871382_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009588235.1\|2871778_2872183_-	DUF2752 domain-containing protein	NA	NA	NA	NA
WP_008817807.1\|2872184_2872511_-	DUF4234 domain-containing protein	NA	NA	NA	NA
WP_009588243.1\|2872610_2873072_+	hypothetical protein	NA	NA	NA	NA
WP_009270798.1\|2873111_2875055_-	molecular chaperone HtpG	A0A1V0SAD6	Catovirus	1.3e-102	35.0
WP_008817810.1\|2875550_2876345_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.7e-49	44.2
WP_009588242.1\|2876345_2877593_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.1e-99	49.5
WP_009270800.1\|2877893_2878514_-	hypothetical protein	NA	NA	NA	NA
WP_008817813.1\|2878776_2879001_-	AAA family ATPase	NA	NA	NA	NA
WP_008817814.1\|2879087_2879459_-	AAA family ATPase	NA	NA	NA	NA
WP_021419988.1\|2879505_2879697_-	AAA family ATPase	NA	NA	NA	NA
WP_021419987.1\|2879934_2880933_-	isocitrate/isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_021419986.1\|2880934_2882269_-	citrate synthase	NA	NA	NA	NA
WP_009270805.1\|2882389_2884312_+	aconitate hydratase	NA	NA	NA	NA
WP_009270806.1\|2884526_2885846_+	serpin family protein	A0A1B3B6C3	Lumpy_skin_disease_virus	1.7e-18	24.7
WP_021419985.1\|2886154_2887081_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3175621 : 3184215

Streptococcus_phage(66.67%)

integrase

attL 3168497:3168510|attR 3178676:3178689

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3168497:3168510	attL	NA	NA	NA	NA
WP_021419654.1\|3175621_3176533_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-19	28.0
WP_167871352.1\|3177387_3178578_-\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	1.8e-155	67.3
WP_002347229.1\|3178656_3178860_-	excisionase	A0A1S5SF07	Streptococcus_phage	1.9e-25	82.1
3178676:3178689	attR	NA	NA	NA	NA
WP_004613734.1\|3179234_3179483_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_021419827.1\|3179486_3179906_-	DNA-directed RNA polymerase sigma-70 factor	A0A1S5SEW0	Streptococcus_phage	4.1e-22	37.2
WP_036744813.1\|3180896_3181085_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	3.7e-15	59.6
WP_021419830.1\|3181099_3181537_-	gyrI-like small molecule-binding domain protein	NA	NA	NA	NA
WP_021419832.1\|3181835_3182198_-	hypothetical protein	NA	NA	NA	NA
WP_153903697.1\|3182262_3182694_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_021419833.1\|3182706_3184215_-	recombinase family protein	M9Q2G2	Clostridium_phage	3.7e-49	29.2

DBSCAN-SWA_6

3216191 : 3232391

Streptococcus_phage(91.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021419871.1\|3216191_3217094_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	8.1e-84	52.0
WP_021419872.1\|3217113_3218118_-	lysozyme-like family protein	A0A1S5SEZ8	Streptococcus_phage	1.5e-131	69.6
WP_021419873.1\|3218114_3220229_-	MFS transporter	A0A1S5SF30	Streptococcus_phage	9.2e-187	60.3
WP_021419874.1\|3220228_3222679_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	74.7
WP_021419875.1\|3222665_3223055_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	2.8e-49	74.6
WP_021419876.1\|3223168_3223672_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.1e-40	50.6
WP_021419877.1\|3223689_3224187_-	antirestriction family protein	NA	NA	NA	NA
WP_021361464.1\|3224382_3224868_-	hypothetical protein	NA	NA	NA	NA
WP_003436839.1\|3224955_3225117_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.4e-17	83.0
WP_003436850.1\|3225283_3227194_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.4e-38	29.4
WP_021419879.1\|3227935_3228070_-	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_153903696.1\|3228084_3229320_-	helix-turn-helix domain-containing protein	A0A1S5SEX3	Streptococcus_phage	3.2e-139	61.2
WP_021419881.1\|3229466_3230831_-	cell division protein FtsK	A0A1S5SFB5	Streptococcus_phage	9.2e-172	65.8
WP_021419882.1\|3230939_3231587_-	hypothetical protein	NA	NA	NA	NA
WP_021419883.1\|3231670_3232054_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	2.2e-38	66.9
WP_036744848.1\|3232067_3232391_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	2.8e-39	73.5

DBSCAN-SWA_7

3401158 : 3414575

Streptococcus_phage(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008977178.1\|3401158_3401662_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.3e-54	60.8
WP_004843362.1\|3401770_3402169_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	3.2e-48	73.0
WP_167871360.1\|3402146_3404597_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	74.6
WP_167871361.1\|3404596_3406783_+	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	1.1e-171	68.3
WP_004843365.1\|3406779_3407787_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	9.2e-137	70.8
WP_167871362.1\|3407803_3408715_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	9.1e-83	52.1
WP_077712409.1\|3408857_3409526_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.2e-30	35.5
WP_144017116.1\|3409522_3410644_+	HAMP domain-containing protein	A0A1B0VMK3	Pseudomonas_phage	9.3e-05	25.5
WP_167871363.1\|3410760_3412128_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_144017118.1\|3412333_3412981_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	6.1e-25	35.2
WP_144017119.1\|3413013_3413238_+	hypothetical protein	NA	NA	NA	NA
WP_167871364.1\|3413282_3414575_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	5.0e-18	29.3

DBSCAN-SWA_8

3646447 : 3682591

Paenibacillus_phage(27.78%)

holin,capsid,coat,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167871437.1\|3646447_3646906_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_167871377.1\|3647545_3648175_-	hypothetical protein	A0A0X8WPC5	Ralstonia_phage	6.2e-06	50.0
WP_167871378.1\|3648192_3648834_-	hypothetical protein	NA	NA	NA	NA
WP_167871379.1\|3648845_3650546_-	dockerin	NA	NA	NA	NA
WP_167871380.1\|3650556_3651207_-	hypothetical protein	NA	NA	NA	NA
WP_167871381.1\|3651210_3654438_-\|tail	phage tail tape measure protein	A0A090D808	Clostridium_phage	8.3e-54	40.7
WP_167871382.1\|3654470_3655034_-	hypothetical protein	NA	NA	NA	NA
WP_167871383.1\|3655026_3655401_-	hypothetical protein	NA	NA	NA	NA
WP_167871384.1\|3655411_3655930_-	hypothetical protein	NA	NA	NA	NA
WP_167871385.1\|3655940_3656399_-	hypothetical protein	NA	NA	NA	NA
WP_167871386.1\|3656388_3656799_-	hypothetical protein	NA	NA	NA	NA
WP_167871387.1\|3656791_3657193_-	hypothetical protein	NA	NA	NA	NA
WP_167871388.1\|3657189_3657576_-	hypothetical protein	NA	NA	NA	NA
WP_167871389.1\|3657588_3658776_-\|capsid	phage capsid protein	A0A1J0MCK3	Streptomyces_phage	2.9e-57	42.2
WP_167871390.1\|3658789_3659335_-	hypothetical protein	X2CYF9	Lactobacillus_phage	2.4e-06	29.6
WP_167871391.1\|3659658_3659859_-	hypothetical protein	NA	NA	NA	NA
WP_167871392.1\|3659872_3661393_-	hypothetical protein	A0A2K9V3K1	Faecalibacterium_phage	3.9e-46	35.2
WP_167871393.1\|3661392_3662946_-	hypothetical protein	A0A1B1P863	Bacillus_phage	6.8e-30	26.7
WP_167871394.1\|3662956_3664183_-\|terminase	PBSX family phage terminase large subunit	A0A2K9V3G6	Faecalibacterium_phage	3.1e-62	52.6
WP_167871395.1\|3664160_3664871_-\|terminase	terminase	X5JB33	Clostridium_phage	4.1e-38	45.5
WP_065531786.1\|3664927_3665161_-	hypothetical protein	NA	NA	NA	NA
WP_065531787.1\|3665258_3665723_-	hypothetical protein	K4I1Q3	Salmonella_phage	2.6e-17	38.6
WP_167871396.1\|3665915_3666377_-	hypothetical protein	NA	NA	NA	NA
WP_167871397.1\|3666397_3666550_-	hypothetical protein	NA	NA	NA	NA
WP_167871398.1\|3666546_3666726_-	hypothetical protein	NA	NA	NA	NA
WP_167871399.1\|3666839_3667658_-	HNH endonuclease	A0A1S5SBA6	Streptococcus_phage	4.5e-41	36.6
WP_167871438.1\|3667654_3667891_-	hypothetical protein	A0A0E3TAK6	Staphylococcus_phage	1.6e-12	50.6
WP_167871400.1\|3667987_3668371_-	RusA family crossover junction endodeoxyribonuclease	A0A2I7SC39	Paenibacillus_phage	1.8e-45	64.8
WP_167871401.1\|3668825_3669092_-	hypothetical protein	A0A0K2CZH7	Paenibacillus_phage	9.5e-17	52.9
WP_167871402.1\|3669353_3671567_-	AAA family ATPase	Q5YA88	Bacillus_phage	5.6e-296	66.0
WP_167871403.1\|3671570_3673157_-	DEAD/DEAH box helicase	A0A0K2CZF8	Paenibacillus_phage	3.6e-220	69.6
WP_167871404.1\|3673675_3674749_-	ATP-binding protein	A0A0K2CZH1	Paenibacillus_phage	1.7e-104	53.5
WP_167871405.1\|3676094_3676493_-	hypothetical protein	NA	NA	NA	NA
WP_167871406.1\|3676603_3676933_-	sporulation transcription factor Spo0A	NA	NA	NA	NA
WP_167871407.1\|3676933_3677215_-	hypothetical protein	NA	NA	NA	NA
WP_167871408.1\|3677211_3677436_-	hypothetical protein	NA	NA	NA	NA
WP_167871409.1\|3677432_3677624_-	hypothetical protein	NA	NA	NA	NA
WP_167871410.1\|3677681_3677888_-	hypothetical protein	NA	NA	NA	NA
WP_167871411.1\|3677950_3678265_-	hypothetical protein	NA	NA	NA	NA
WP_167871412.1\|3678277_3678505_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_167871413.1\|3678568_3678706_+	hypothetical protein	NA	NA	NA	NA
WP_167871414.1\|3678909_3679638_+	LexA family transcriptional regulator	A0A0D4DD29	Staphylococcus_phage	4.8e-18	28.9
WP_167871415.1\|3679674_3680667_+	hypothetical protein	NA	NA	NA	NA
WP_167871416.1\|3680815_3682363_+	recombinase family protein	R9W007	Paenibacillus_phage	2.7e-127	47.0
WP_128577713.1\|3682336_3682591_-\|coat	spore coat protein CotJC	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048837

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection