CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047225	Mycoplasma gallinaceum strain Peacock20181011 chromosome, complete genome	3 crisprs	DEDDh	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047225_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047225_1

38998-39170

Orphan

Consensus_repeat	Method
TCCTTGGTTTGGTTGTGAATTAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP047225_1

>merge|NZ_CP047225|1|38998-39170|CRISPRCasFinder
TCCTTGATTTGGTTGTGCACTATCTGTTGATGATGAATCCGAATTAGCTGTTCCATCCCCTTCTGAGCTAGTTCCTTGGTTTGGTTGTGAATTATTTGATGGTGCTACGCTTGAATCTGAATTTGATGCGTTAGTTCCTTGATTGCTATCCCCTTGGTTTGGTTGTGAATTAT

>NZ_CP047225|1|1|38998-39170|CRISPRCasFinder
TCCTTGATTTGGTTGTGCACTAT	CTGTTGATGATGAATCCGAATTAGCTGTTCCATCCCCTTCTGAGCTAGT
TCCTTGGTTTGGTTGTGAATTAT	TTGATGGTGCTACGCTTGAATCTGAATTTGATGCGTTAGTTCCTTGATTGCTATC
CCCTTGGTTTGGTTGTGAATTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047225.1\|WP_167844905.1\|26774_27212_-\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|184424
NZ_CP047225.1\|WP_167844911.1\|34824_36372_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP047225.1\|WP_167844921.1\|47651_49331_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP047225.1\|WP_167844918.1\|44345_45044_+\|ribonuclease-HIII	unknown	unknown	gnl\|CDD\|260000
NZ_CP047225.1\|WP_167844915.1\|41122_42100_+\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|235456
NZ_CP047225.1\|WP_167844922.1\|49339_49768_-\|ribosome-assembly-cofactor-RimP	unknown	unknown	gnl\|CDD\|184779
NZ_CP047225.1\|WP_167844914.1\|39926_41063_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP047225.1\|WP_167844920.1\|47365_47668_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP047225.1\|WP_167844906.1\|27198_28398_-\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235948
NZ_CP047225.1\|WP_167844904.1\|26197_26782_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP047225.1\|WP_167844912.1\|36545_37736_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197338
NZ_CP047225.1\|WP_167844908.1\|29931_32109_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_129620170.1\|29540_29756_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_167844919.1\|45591_47391_-\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP047225.1\|WP_167844916.1\|42150_43038_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP047225.1\|WP_167845584.1\|45071_45581_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP047225.1\|WP_167844910.1\|33317_34838_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|227321
NZ_CP047225.1\|WP_167844909.1\|32126_32837_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|226087
NZ_CP047225.1\|WP_167844917.1\|43440_44346_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319818
NZ_CP047225.1\|WP_167844907.1\|28401_29358_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236609

Protein	Function_ID	Function_description	E-value
NZ_CP047225.1\|WP_167844905.1\|26774_27212_-\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|184424	PRK13964, coaD, pantetheine-phosphate adenylyltransferase.	2.01127e-64
NZ_CP047225.1\|WP_167844911.1\|34824_36372_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.03735e-32
NZ_CP047225.1\|WP_167844921.1\|47651_49331_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	3.52061e-60
NZ_CP047225.1\|WP_167844918.1\|44345_45044_+\|ribonuclease-HIII	gnl\|CDD\|260000	cd06590, RNase_HII_bacteria_HIII_like, Bacterial type 2 ribonuclease, HII and HIII-like. This family includes type 2 RNases H from several bacteria, such as Bacillus subtilis, which have two different RNases, HII and HIII. RNases HIII are distinguished by having a large (70-90 residues) N-terminal extension of unknown function. In addition, the active site of RNase HIII differs from that of other RNases H; replacing the fourth residue (aspartate) of the acidic "DEDD" motif with a glutamate. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes; however, no prokaryotic genomes contain the combination of both RNase HI and HIII. This mutual exclusive gene inheritance might be the result of functional redundancy of RNase HI and HIII in prokaryotes. Ribonuclease (RNase) H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, archaeal RNase HII and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication or repair.	2.21576e-68
NZ_CP047225.1\|WP_167844915.1\|41122_42100_+\|aspartate--ammonia-ligase	gnl\|CDD\|235456	PRK05425, PRK05425, asparagine synthetase AsnA; Provisional.	0
NZ_CP047225.1\|WP_167844922.1\|49339_49768_-\|ribosome-assembly-cofactor-RimP	gnl\|CDD\|184779	PRK14644, PRK14644, hypothetical protein; Provisional.	3.78908e-18
NZ_CP047225.1\|WP_167844914.1\|39926_41063_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP047225.1\|WP_167844904.1\|26197_26782_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	7.87122e-83
NZ_CP047225.1\|WP_167844906.1\|27198_28398_-\|acetate/propionate-family-kinase	gnl\|CDD\|235948	PRK07157, PRK07157, acetate kinase; Provisional.	0
NZ_CP047225.1\|WP_167844909.1\|32126_32837_+\|DUF402-domain-containing-protein	gnl\|CDD\|226087	COG3557, COG3557, Uncharacterized domain/protein associated with RNAses G and E [Translation, ribosomal structure and biogenesis].	1.22109e-38
NZ_CP047225.1\|WP_167844912.1\|36545_37736_-\|hypothetical-protein	gnl\|CDD\|197338	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like. This subfamily includes Mycoplasma pulmonis MnuA, a membrane-associated nuclease related to Deoxyribonuclease 1 (DNase1 or DNase I, EC 3.1.21.1). The in vivo role of MnuA is as yet undetermined. This subfamily belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	4.15267e-25
NZ_CP047225.1\|WP_167844920.1\|47365_47668_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	4.13231e-19
NZ_CP047225.1\|WP_167844919.1\|45591_47391_-\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP047225.1\|WP_167844916.1\|42150_43038_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	6.97772e-31
NZ_CP047225.1\|WP_167845584.1\|45071_45581_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	6.07885e-85
NZ_CP047225.1\|WP_167844910.1\|33317_34838_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	3.86043e-21
NZ_CP047225.1\|WP_167844917.1\|43440_44346_+\|HAD-family-phosphatase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.09085e-57
NZ_CP047225.1\|WP_167844907.1\|28401_29358_-\|phosphate-acetyltransferase	gnl\|CDD\|236609	PRK09653, eutD, phosphotransacetylase.	9.20578e-145

>NZ_CP047225.1|WP_167844912.1|36545_37736_-|hypothetical-protein
MNQLKLGTSENLDNNNLNNVEDNNQPSVEYAVRHDLRIAHYNIKNFGILEESEATNEYRYKIKSLAYNISEINPDVIGITELNYNKEYEVSKIVDQLNLYSKSRSRNYKFILQTPEEADNPEVNSDTVEQIAIVYDANKIDPSLFSNNSSSASFHGSIQLIGENGTFTNKRKRYQRPPFGARFKLKSNNKFFTTIFAHFDSPGVKFKYGEISIKKVPDGNGGAIPLAQNQGNFEISEAYGLTYVIDYFKNLGAEKIIFAGDTNIKSNNEKAFITSFQRGYLAGWKDFNQDKYLTSFGQNQSIDAFLSNRRSTGYSQPYDKMIYDTAYFRQSEKNKDIFKLDVLNMYKNWRENKKNETYKSTIESIWNEEVGTSTTPSNYFSKTSDHLPVYIDLEFI
>NZ_CP047225.1|WP_167844911.1|34824_36372_+|ABC-transporter-ATP-binding-protein
MKWNRLIFQDRKLFIIAVLFRVFSSFLTILGLWCFYQAIENLYADNVNTSLYYILGFFACEIVGIYIEFENQKKFMKLIYVTQNNLRNAFMNKYSTFHPREFLNKSNEMLLNNLETDSHYIAQYALIHVVIFGHFSLLIGYIILYGILSWSILLILLALTALKLLLNLAIVTLKSKITVKKQSLQNDIYVKIGNYISNFSNFVFANKKELLAKLFVKRIDIVYQKEAKYSAQSELISFINQMINWASLLCTLVVGIVLLNNNYINLALFLIFVVKYQEFSSTTSMVLSTVQDFKTIKEYNNKVNHFFGGFAIKNTLNKVVFEKLVLNNLNFAYEDKQIFNNFNLEIARNKKHLIIGKSGSGKTTLTNILTNIINDYSGHLYLNDYKVGSDDDLSLNISVLNKENVLPEMIPTSYWNNQSVKEKLGNLHIDFVDFEKDLDTNQLSLGQQQRLKLLEVLSQDKQIYIFDESLSNLDKDKQNSIFEYLMSLDKTIIFISHHFDEQMISKMDKVTNLSK
>NZ_CP047225.1|WP_167844910.1|33317_34838_+|ABC-transporter-ATP-binding-protein
MAFLQLDSKDPEVKNVLIAFLLISLFATISYLINEFFFLVSNYLLKKTILREMIDKLFSTNFAKWAFVPEQNKLVAFANSPDLLSKGYYLSFINGFIQLVSFLATLISLAIISPIVLAYILPLIIVALILPMLAHKKGDQLSYLNNQLMINPKKISSSITKQIFTHSINGTFENLEKSYKDQLNQEVVTNIDLFSKIYGSFVFWQDLISIIFSALVIVISLMIALFTPNLLAIALFGTILTKLPSFKSFIKETLGMFLNVYICKMHFKQMQEDLYSKSELAANLSDAPKEAPLNFEKLTLANATIISKETNETILENVSLSVNKNDKILIFGESGGGKSSLVLNLTGSMTVINESQIFINNKEVNNLDLLNQSYLTNEKESLFEGTLLENLTFFNDTLVNETKKLVKLFDLEKLDLNEAINIENLQYSHGQLQRILLIKAINSGKEILFFDESLSNIDEKTATEILKYLASLNKTVLVVSHNHTPEHKELFNKIWKVEKGVLHEMK
>NZ_CP047225.1|WP_167844909.1|32126_32837_+|DUF402-domain-containing-protein
MEWDFSKLKIGSMINVQAYKHNGFLYRQWNGAKVIFQNKRHIVLFLYGTKVTEFNRENNGWKYNENAIWFLPKNSFYNAIVLFKENIGKYYYINMASKPIFEDNTIKFIDYDLDIKCYPGKNLQVVDREEFSQNSKLMNYSDEIKTKIYEEIKNIIEDYNSFSYFFNDEIIDYYLEILLKDKLISKNFYNYALSQEISSSKPKKAKKVVKNNNNNKNKPQRQNKPKNLQNSPKSHK
>NZ_CP047225.1|WP_167844908.1|29931_32109_+|hypothetical-protein
MKKSTKWLFPIVALGSLTAAGAAGYGIYASGMLQSLLNSSSNQYFAPTIKNITDDIAIRKEYKPPFFYKEDAEQYNALMSKLVTDYDLETLQIDPGKSKKEIVENYYKSADRFIKDDKNIDNQVYREYVDPVTKIRFVDFAYYEDEITETNEDGSITTYKIPRYLLGEEGLKLLATEFKRKIPFGPEVFALKEVNINNFFVSPPKTKGLYIQELQNIYLNGASLAEKGLDLFSIVKYMTTTLFHEYMHHWATFYAETGKKSDQNTDLNNKDIKTQQLLYYKDSSVSSLASGHKHSLTQYWNGYFSSNFKKLLNYDVDKKALYNNPIKTTLKVSPDLAENTLFTTLSLNEIWRLANETNTADITNKFTTVDDTQLIYGVNQSDTNKPEIKFEIGLNTIQYYFSLTELVPREYTKYAFESYFDINDDNNAQKRDLYLKNNGSYVSWSGLYFTNLENRKTYNYLPSANVEDWWKTFYIKPSNQILKVSKKQPAYLAYPNNIFDASKFIDENGNILEKERTKNRSEEFYQLFLNTMGYGKEIAQIFSDNKWKWGDSLNENHKYHTAIESEDAYTQDIKFIGYMPSKEYTGFAIIKSSGDIQVTPFEYQDTFSFFGKSKIDTGASLWDPAARNEQIRSRIYPKEKYYPYVTKDFIKLENNSVIALWKDLNQNGIYDAGDEIVKKELSLPSQRWVSTEKSSLASQNSEKNSNTFKITINNIDSQTKIQVKN
>NZ_CP047225.1|WP_129620170.1|29540_29756_-|hypothetical-protein
MYKYKAKLLSNGELVAQSNSLEDLEGQIKSFRRKQKYGLHTKQNEKIQILHVERNNLEGASHSKEVVLKNV
>NZ_CP047225.1|WP_167844907.1|28401_29358_-|phosphate-acetyltransferase
MNIEALLETKVSNLKSVKKIVLIDGDDKRMQKAAKLLAQHKNIETVLLVEEDVKGSSNLNFLNINADNKKMEELAQKYFEIRKGKESMEQCIESLSTRPFYAMMLLANGEADGVVGGLKYATADILRAAFKAIGPKPGTKTISSVMLMHNGESNYIFSDISVNVKPNEEQLADIARNANDFALQMGFDPRLAFLCFSTSGSAITEESKLVKKATDLYNETTTGRKALGEIQLDAAIDLEIRKAKYKGESYKHSANVLIFPDLNAGNIGYKLVQRFANYGAIGPIVVGTKKPVNDLSRGSTIEDVYNTVLITALQSEEK
>NZ_CP047225.1|WP_167844906.1|27198_28398_-|acetate/propionate-family-kinase
MEHKILVINAGSSSIKLSLFSKDSLELLASGIAERITLPMGNISIKFKDEKFEKEVAMPNHEVAVEEVYKLMQEIKLIENKDEIQYIGFRVVQGGTYFSSTSKITQKEIDLIQECSIYAPLHNPGAVQAMHGFKKVFPNALLSADFDTAFHTTIDKVNSTYPINRELAEKLKIKRYGAHGISHQYITERLSQILGKEKVTFVNLHLGNGASLCAVKDSRSFDTSMGLTPLAGIMMGTRSGDIDPSIHQFVKAQTGMDVEEFTDLLNKKSGLLGVSGISSDMRDVRDAALKGDENAQFTLELFAQRVADYTAMYANKLGGNIDAIVFTAGIGENDKNIRRMIVEKLFFKNIKLDPELNQLSRGPEYRVISAQDSEVPIYVISTNEELVIAKNARKIYENR
>NZ_CP047225.1|WP_167844905.1|26774_27212_-|pantetheine-phosphate-adenylyltransferase
MKTDKKAIYAGSFDPFHDGHFQILQKAARLFDFVYVIVSINPDKPDASDIDIRYNNTKKLLSNLTNVQVLKNKDRFIAEIAKELDVKYLVRSARDVIDFNYELELAAGNNSLNNELETVLLIPSYEYIKYSSTLIRHKEKMKKDV
>NZ_CP047225.1|WP_167844904.1|26197_26782_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MFKFVKSSTEKSNWYEHSNKEIAFWGRSNVGKSSLLNAIVNNKKLAKVSKTPGRTQLLNFFENEHGAVFVDLPGYGYAKLSQSQIQKMMKMIENYLIERDNLTHLFLLLDSRIPTTKSDKEVMEFLTRINLPFTAVYTKVDKLNQKEKSALLKRIKLDMQTYKFDKYYIVSSETSYGIANLINQINEIFGENHE
>NZ_CP047225.1|WP_167844914.1|39926_41063_+|methionine-adenosyltransferase
MRKLFSSESVGKGHPDKVCDQLSDAILDAYLALDPHAKVAVEAMASGHNIFIAGEVGSIVDIDVIEICKNILKRLGYYSHKTSFIVDIKTQSPDIAQGVNLDKEIGAGDQGIMFGYATNETPQYMPLAITLAHQLVRRAEELRVSGEFKWAKADMKSQVTLDYTDPKNVTADTVLISIQHDEKFNEQEFKQFIKDNIIKFVFDKYNLEVPSKILINPTGKFVIGGPSSDTGLTGRKIIVDTYGGASRHGGGAFSGKDATKVDRSAAYAARWIAKNVVAANLADRVEIQVAYAIGVAQPVSIMVETFGTNKVNNSIIEQAIQNIFDLSPKGIIDALDLRKPIYQKTAYYGHFGRDDLDFTWERLDKVEELKKEVAKLSK
>NZ_CP047225.1|WP_167844915.1|41122_42100_+|aspartate--ammonia-ligase
MYKSKLSVKETQLAIQDLKYNFSKNFAKALNLVRVSAPLFVRSTTKINDGLNGETPVTFSPAQIDETLEIVHSLAKWKREALYKYHFNVYEGIWTDMNAIRQQENIDYKHSYYVDQWDWELIIKREDRNLDFLKEVVKKIYKTIRFVEHKLIFDFPQLTKKLPENITFISALELYNKYPNLSPEERENLFAKEVKAFFVYTIGYPLPDGVKHSARSFDYDDWTLNGDLIVYDPVNEKALEISSMGIRVDKDALTKQMIFDQKEDKVATYHNQILDETLPFTIGGGIGQSRLSMFLLEKKHIGEVQVGIWSEEVISEAKKEGIELL
>NZ_CP047225.1|WP_167844916.1|42150_43038_+|MurR/RpiR-family-transcriptional-regulator
MNNIVKNKKNAHFFKKPFVQLHDTFTNSDIKLHDFINSYDKEIFDLSQKELARYSNVSEGSVSRFVNKIGFKSYREFIAHINLVIKDFYTNYLKNNIENLNQITRREEILLSHNFAVNSIVNDKTYASIEYAAELLYKAEKVFILTSNEDKVISSEFAYLLQKVGKHVIYSSDFDIFLPLLANASKNDVAVCFSDVIDSLQIQFISKYLLKNGAKLITLSSDNVLPEDVRVATKIIYSKIQNPINKIYFSNKASQLLIAELLFDALVSIDSDIEKKYKKSKDMHSLWIDFINLKK
>NZ_CP047225.1|WP_167844917.1|43440_44346_+|HAD-family-phosphatase
MEKERYLFAIDLDGTTLRSSQTGEIHDTTVNAIKRATAEGHIVCILTGRPWRSTKFIYDELGLKTIVSNYNGAHIHHPYEYEFIPYIKYLNLNEALYILGDEKVQAELTNIAIEGPDWVQLQHRDPNLEKVFGFENTPKFKEGLDFHKLPLMPTGIIFDVKQTTDVEKLRKYLKARYGDLAEFSYWSKGEGLSPVFDMTNITANKGKALSMLIRYYDIKVENTVAIGDGFNDVPMFKVANVSVAMANATKEVKKYASVKISKTNKEGGVGWYINKFLDNPEAEINKSSIFKQKLSKSVEIE
>NZ_CP047225.1|WP_167844918.1|44345_45044_+|ribonuclease-HIII
MKYFDNLNHLNLATRNVVGVDETGVGDYFTPLIAAAAFLPNHLTEWAKKIGVKDSKKLSQKQINEIAPILINTIPHSVYTLTQSGYNSLSKVYNANEMKFFAHQKAINLLVDRYNLRVNHDIDLIIIDQYSTTNSILKYDNKILKLNNWAKLQDYEIDTLLINKAEEVHLSVACASIIARYTLNLKMQEQSQKWNFNFPLGASSKTKEAVSEFTLKFGEKALGEVAKLNFKK
>NZ_CP047225.1|WP_167845584.1|45071_45581_-|adenine-phosphoribosyltransferase
MDIKKLIRDVKDFPKPGILFKDISPLLANGEALSYTIDQIASHCKDVDVIVGPDARGFLFGTPTAAQLKKPFLMVRKPHKLPGEVISMNYDLEYGSNILEIQKGFIQKGQKVAIVDDVLATGGTTKAIIKLLESQGAIVSKIIVLLELKELKGRELLGKETEVISLIEV
>NZ_CP047225.1|WP_167844919.1|45591_47391_-|translation-initiation-factor-IF-2
MSKKNTRISNVQDVKEQLSTTKTELKDGVFTFTGKLSISDFAEKTKINANEIIKKFFLKGQMYTLNQILEEEEIAELCLEYGFDFKKETNVDGTNFLDELVIIDDEKNLVKRAPIITVMGHVDHGKTTLIDKIRNSNIVASESSGITQHTGAYQIKHKGNKITFIDTPGHEAFTMMRARGAKVTDIVILVVAADDGVMPQTKEAISHAKAANVPIIVFVNKMDKPNKDLDRIKGELAENEVVIEEYGGDTQIVYGSALKGEGLNELFDAIMLLSELLDLKANPSRYPIGTVIESKIDRGVGSVSTIIVENGTLMKGDFLLAGSKYGRVRSIQDSYGNTLEKVEPGAPARISGLNYAPNAGDRFIGMSDEKLAKRLASQKEQFDKINSMNSRANMNNSGKKVINVIIKSDVHGTSEAIKGQIHGLENDEAMVNVISAAAGDVNGSDLLLAQASNAVIFAFNLKLQPAIKQNALNQGVQLIAHDVIYKIVDDIQTTLDGEKAPVYEERKIGEAHIIKVFFYSKVGKIAGCLQDTGVVKAGSKVKVYRKGKMIHEGVLDSLKRELNDAKEVVKGKDFGCHIKGFNDIEEDDLLEFYEDVRVN
>NZ_CP047225.1|WP_167844920.1|47365_47668_-|YlxR-family-protein
MNEMNKISYTRKCIITNEIVNHELLIRFDYNKSKNEVNLDLDRTLKGRGCYMLLNAENWAKAKKTKALNCAFRTNVSKETYDKIDTIIQEVLNEQEKYKN
>NZ_CP047225.1|WP_167844921.1|47651_49331_-|transcription-termination/antitermination-protein-NusA
MSKIQNDLLNPNPNRDSEFYQVIEGFARNNKLEFKEILEIFESEINKTIAKNIDPEVEVQLVEDAENKKVYIYNVNGSVVEDSYEFDDEEKINGDEAFELDPTRISFIKLSEARDLYGKKLEVDDVVSIKFSLEALPEKSRNAIMSGFNMSLRAQIKLKTYEAYKDLIGSKLSAKILSKYKNGSFNLEFEDGVTAFLFKNKVNTKSKMELGSYIDVYLENINLENKLSICEVTMISPKEIEDAIKREIPEIANGDILIVKIQRNVGIKSKIAVQPNPERSFDYDVISSIFGEGARRILAVSQSLNGEKIDIVRYSDNKEEYIKYALSPAKVIDVLYQKGTNTYLAIVQPEEVVSAIGREGNNINLAAKLVGAKIEVKSTEDAIKDGIEFNKSNMYEKPLFKATAKNDRTKKARSQYFDNIEIDLQDFKADVQNFMESFTDELVNEPVKEVKAKPKAQTKLNENEIENWFSPENIQIEVEDEDEYDFIEQIDFEELLTKEEEETEAKAETAQEAPTAKKPVEKYKKAKVELKGFKVDNDLANYGLDGNLDLREFEDEWDE
>NZ_CP047225.1|WP_167844922.1|49339_49768_-|ribosome-assembly-cofactor-RimP
MDYKKILNEHFGDLILDAKMVFDPESSLEITINTDSLDVVTEQSRKIVDFLESQTWFKDSWNVIVLSKGTDLNVNLDNVTNYIGQMVTFNLHKSFEGQNVFNVEILEDLGDEILVRWNNKGNFRKIKLNKSNITKAEKYIKF

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Crispr_ID: NZ_CP047225_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047225_2

65527-65605

Orphan

Consensus_repeat	Method
ATTCTAATGAATCAATTTTGTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047225_2

>merge|NZ_CP047225|2|65527-65605|CRISPRCasFinder
ATTCTAATGAATCAATTTTGTTTTTGTATTGTGTTTTTGCATTTTCTGAAAGATATTTTAATGAATCAATTTTGTTTTT

>NZ_CP047225|2|2|65527-65605|CRISPRCasFinder
ATTCTAATGAATCAATTTTGTTTTT	GTATTGTGTTTTTGCATTTTCTGAAAGAT
ATTTTAATGAATCAATTTTGTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047225.1\|WP_167844925.1\|54124_55591_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_167844939.1\|73506_74628_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|274090
NZ_CP047225.1\|WP_167844935.1\|71080_71623_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP047225.1\|WP_129620197.1\|70710_70959_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP047225.1\|WP_167844922.1\|49339_49768_-\|ribosome-assembly-cofactor-RimP	unknown	unknown	gnl\|CDD\|184779
NZ_CP047225.1\|WP_167844937.1\|72328_72610_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_167844931.1\|62969_64112_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_167844928.1\|58370_59654_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_167844940.1\|74693_75425_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|100107
NZ_CP047225.1\|WP_167844933.1\|67649_69629_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP047225.1\|WP_167844934.1\|70020_70704_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP047225.1\|WP_167844936.1\|71600_72326_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP047225.1\|WP_167844923.1\|49907_51551_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366234
NZ_CP047225.1\|WP_167844930.1\|61844_62945_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP047225.1\|WP_167844929.1\|59746_61693_-\|type-IIA-DNA-topoisomerase-subunit-B	unknown	unknown	gnl\|CDD\|235542
NZ_CP047225.1\|WP_129620195.1\|69680_70031_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|376502
NZ_CP047225.1\|WP_167844927.1\|56899_58363_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_167844924.1\|52052_54122_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173813
NZ_CP047225.1\|WP_167844926.1\|55600_56878_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_167844938.1\|72596_73454_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570

Protein	Function_ID	Function_description	E-value
NZ_CP047225.1\|WP_167844939.1\|73506_74628_+\|molecular-chaperone-DnaJ	gnl\|CDD\|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	1.85048e-144
NZ_CP047225.1\|WP_167844929.1\|59746_61693_-\|type-IIA-DNA-topoisomerase-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NZ_CP047225.1\|WP_167844922.1\|49339_49768_-\|ribosome-assembly-cofactor-RimP	gnl\|CDD\|184779	PRK14644, PRK14644, hypothetical protein; Provisional.	3.78908e-18
NZ_CP047225.1\|WP_167844940.1\|74693_75425_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|100107	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).	8.18696e-11
NZ_CP047225.1\|WP_167844935.1\|71080_71623_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.18658e-71
NZ_CP047225.1\|WP_167844933.1\|67649_69629_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP047225.1\|WP_167844934.1\|70020_70704_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	4.99873e-129
NZ_CP047225.1\|WP_167844923.1\|49907_51551_+\|hypothetical-protein	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.04291e-06
NZ_CP047225.1\|WP_167844930.1\|61844_62945_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP047225.1\|WP_129620197.1\|70710_70959_-\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	4.28382e-41
NZ_CP047225.1\|WP_129620195.1\|69680_70031_-\|50S-ribosomal-protein-L19	gnl\|CDD\|376502	pfam01245, Ribosomal_L19, Ribosomal protein L19.	5.60061e-56
NZ_CP047225.1\|WP_167844924.1\|52052_54122_+\|S8-family-serine-peptidase	gnl\|CDD\|173813	cd07488, Peptidases_S8_2, Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.32968e-14
NZ_CP047225.1\|WP_167844936.1\|71600_72326_+\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	5.61137e-52
NZ_CP047225.1\|WP_167844938.1\|72596_73454_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	7.42131e-106

>NZ_CP047225.1|WP_167844931.1|62969_64112_-|hypothetical-protein
MRLEKKHFTAEKETWIKIQNDVYNNLVAQKKEVNQKMILDHSIEYASRIWIDQQWTLLNNQANGQKIYFRPVISNIVANVEEFSYDLSWYVIEDLNFIKMDLTPSELEYDFENNFSQVSEEFIKHTFKNYRFRVDKDTNVSVGDIIEVEITSTKTKQSTKTMLEVTPNSENPIIRWAIGKDKGAEDVLKDKQNDLKIKILNITEFVTKELNEETLPLLHKYGIHSLQEAKEQILNIIRTENLNAVMFAYGKKLLDLIMQKNKDVSFPMELLELEASSSRYNNLKDNKDALYKKINIDLWNYFWDMFIRIKCNFDISKQEVEETIQFAHRFWAKLENQNNLNITAIHNVLICQKLGLFYLKKVDPAFYEKNKKLFYFDNYK
>NZ_CP047225.1|WP_167844930.1|61844_62945_+|redox-regulated-ATPase-YchF
MSLKAGIVGLPNVGKSTLFSAITKKEAESSNYAFTTIEPNISSVPLMDKRLDEIAKIINPQKIIYATFDFVDIAGLVQGASKGEGLGNKFLANIREVDAIIHVVRCFENKDILHVANSVDPVRDKDVINYELILADLDTINNVLNRVAKKAKSGDKEGITEQNAALKIKEALEKEIPAREVVLDENEAKFIKGYHLLTFKPIIYVANLSNEQFASYQNDPLYLQLKNSLKEYERVIPICVQLESELINIEDENEKQELLGLYGIETSGLDILTREAFDLLGLETYFTAGQIEVRAWVFHKGWAAPKCAGIIHTDFEKKFIKADVISYSDYIEFGGELGAKNAGKLRSEGKTYIMKDGDICHFKFGK
>NZ_CP047225.1|WP_167844929.1|59746_61693_-|type-IIA-DNA-topoisomerase-subunit-B
MSEKNQSYDASNIKFLEGLEHVRKRPGMYIGSTSKTGLHHLIWEIVDNSVDEAMAGFADKIYITITKDEHIIVEDNGRGIPVGTHPRFGISALEVVLTKLNAGGKFESNAYKVSGGLHGVGASVVNALSDSLKAWVKRDGKLYFAEFANGGQTVKSTEVIGEAKEGETGTKIEFHPDYKIMEQVPFDKELIIDHAKQIAHLNKGLYISVTDLRDGTIEEFQYDNGIIDYVKELNEGYNPISDIIFASGDYVVNENDPEHKKTVNIEVACQYLSDLYRSNIISYTNNIATHEGGTHVSGFYDALIRIINNYGIEKGLIKVESDKFTRDDLTEGLTAVISIKYPDPQFEGQTKGKLGSKDARIATNKVFSTSFERMLNENPDIAKKIIDRALMARKSRLASVAARDNARRKSAFDNGGLPGKLSDCSSKNAEISELFIVEGNSAGGSAKMGRDRNIQAILPLRGKVINVEKARQERVLENEEIMSLITALGTGLGDTFNINKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYFKPLIEYGFVYIAQPPLYKIQQNKTVEYAYTDEQKEKIIATLNPNQKINIQRYKGLGEMDPEQLWETTMDPEKRKMLQVQIADAYKADLAFTTLMGENVELRREFIEKNAKFVKNIDL
>NZ_CP047225.1|WP_167844928.1|58370_59654_+|hypothetical-protein
MKRKLNTLLVSTISALSLIGITSCNNEIVKENKPVIVEKDASAPNNNIDPKKTFILKLLEEASKEKNSLEGPEWWWKTESEWLFAKLPLGSTGQVWEKNNWQEMFFKDHNAKRLENISEIDNSYAQKLSHFQKYLTKPLSEYSKNEVNFHNLNNNFYGVYKYEFKNDPRDVNIKTLFTINKNIPNREYLSSQWTNLLLLKNFEEIESYAYSIQRNVNHFGIFKFKNEFFDNVLPVIEQMFKDYDAENNPNFRVAIIPARNNSFYLRNIFVDKNNLNLIARTNYLNAFFEEGSSKFNLLIVPLNYDLSYLDTPDISSKNPNILDLDREFGTIIDNKAKGGKLKDYLAGYVSDLYFDNFFYVYLDHFINGANYNVAINEQENLNDFLRLFAYKMNLSFNEASAFFNKIQTLQKLTDNELVILEKWLELS
>NZ_CP047225.1|WP_167844927.1|56899_58363_+|hypothetical-protein
MKNKKKLLSISSLLPFLLVPAISSCKSHQEAPINAKKEVASNNHSDEHRISVEYDLNEFNFSKGKQYELQKLVRNVKKEWDLDLNQLWNSITKRHSWANLFIDRFDKEQISNLLPWSSQKIYEDKYGRIIKNNEKVTVDDNYKDYLKWLDNYLVKDFNSLNVEEKLTPSNSKDSFFGVFKYKLENTIYDANDFFVNFVKLDSPEYLDDIWTNVFFVNKYSELEEYVSGMDSAAAKKELRQNLLPKIQSLFENNKSKDMFFSVAIIPTYNENMFIRNMYYDNEKGNLIAKMSFLNSEQISDKLNLLIVPIWYKPKFHIVFEPWKQLKPTYDTFGFPVDETVYYSRKLSSKFTNIDNFIIRNKRTLNFILDDSYNENEWINIPYHQTFEWTLLTYTANLYFDNLFYCYLDHFINGQSYTFENFLDQEAENKFIKFLSYKLRINELDARNFFNKIQNLEKLNYLEIPLLKKWVMQDFKDYDKEIDIKETF
>NZ_CP047225.1|WP_167844926.1|55600_56878_+|hypothetical-protein
MKLKLNKICLPLLSAFSVFGMTSCKNEVKPESEVVVVEKEKIVSAPEKSPKESFILNLVDRALREKYHPSKDNEWWWWSEKEWNKMKLPIAGSEKERPKYGAHEDKEIYFSEHGISKLETRTEIDSEYASKLEKFKKYLNKSLDQYSKQESSFDSINDNFYSVFKYQFNSSIKDHFSFIKKAFVIDKNIPNADYLSYEWTNLFLLKNTEKIHEYANAIQNEEFKNEFLTNVLPVIEKMFVDYDAQNNPNFRVAIIPTTNNTMHLRNILVDKNNLNLIARMNYLNKGEVDKLNLLIVPLNYDLSKFNAPDHSSKNPNILDLDREFGTIEENEPKGEKLQDYLAGYVSDLYFDNFFYIYLDHFINGANYNVAINEQENLNDFLRLFAYKMNLSFNEASAFFNKIQTLQKLSDSDFVLLEKWLEQAFN
>NZ_CP047225.1|WP_167844925.1|54124_55591_+|hypothetical-protein
MKKNIKIFNYFLAFSSFAAFPTIAVSCKNNDESILKKNLEISSSKTSHSFDKELFGNVSRKGNQYELQKLVRKVERDWDIDLNQLWNSITGKHTWADIFIDRFDPQQREKLLPWSSKIVNSNQQGRIVKNPEKVEIDNNYKETLMSLNNFLLKNINDLDVDQKLPKESFNNIFSGAFKYKIENPIRNVNDFFVNFVKLDSPEYLSDIWTNVFFANQYSEVEEYVSQMESTNAKDELMNNLLPKIKALFDNNADDMGTFSVAIIPTYNDNMYIRNMYYNYEKGNLIAKMSFLNNDEISENLSLLIVPVSYAPKYMNAFFPWTRWSLFDNLQYQSYRFANDVHYSRHLSSKFLDIDNFVVKNKRHLKFEGYDSEINIDVWLERPYMRSFEWTTLTYTANLYFDNLFYCYLDHFINGQSYTVENLSGEQLENKFVKFLSYKLQISELDTQNFFNKIKNFEKLNENEIPLLKKWVTQDFKDYDSEINLWWTY
>NZ_CP047225.1|WP_167844924.1|52052_54122_+|S8-family-serine-peptidase
MKKKWKFGFLSSIFSLALAPIAISASPSPSIQVNEKEDSVAPFLNDLDSRDKILVLELKYEIPNFENFNQYSLFVKEKNNFYLKEIQKLNLSGISLEINPIFPEIWVNFSSEKEYQNIDFYYQKLKNLFFIKNTKVPYKNLLKKNWIPDYLFDTHIEWVKKYRTDNNYFSEQLKMVKDLEFPYFEENVYKMHKMEMEVDDFGFEFPYYRQKPKPKTIETKPADFKEKPNFKIGVLEVNNVFYRKDFSSDKTDEFKITTTNYFKPSEDSYFNKYIKTRNWFSDNEEKRQQFDFSENKNITHSANVTSIIKNTLSTYSNVELVYANFGGFVEDENSYFIRTLRGDNNITNKEWSFSGSSYKEWFKSMEYLLNNDVKIINHSYSSNRNSFDFYSGQEEFLDYIAYNFGVVNVFSSNNNASYESTIATGEFFDNNYKNSANSLFIGSINKNSVWSSFSGYKNNYKLPHQLAPIVLAPGENYNFSFLKNNSQKNGSGTSYSAPLVASLLGKLFSENSKLFNDKNISKLFSLIALSADKLNNLGFDKEGFGLFNFAKMYELSDKVIDLKNLERISNKNVTDKIFVGNDKKIRFSLAFLKTVGVNKNKFEYVYDWRKNYENEYLQYVNEFKIPRIYIEKLVNGKWIKIKDVNFAVSEYVKLDDISINENGYIRFVFENMDSQAKGSLVYESVDKGV
>NZ_CP047225.1|WP_167844923.1|49907_51551_+|hypothetical-protein
MSHPWVLKLKIYILDKILINKGVTMGVFKITTHKKTSYYEERKAQIIAGIIRFWNKRTNKELARMYHVSVRTIIRYKQEIKPFIENGTFNVAHKGRKNENALKYNDETINKIMCDYYDFSEEFFPKNATINTAPFWLYYYEKVKQNFNISYSQAFRRVKKQGFINIQMTRKGKRESRKIRRLLKQEIGEKTSLFTRIGSLEIDEREKKRKSVYQAKNIHLKFGENVELDACQEIFFGDKKVFIYHAIDSATGKLLELQCEEQETNVGYQKLIDKLFKKYGFPSNITTDRRRTFWGSEKTYTMFEEALIDRGITLFVSSNPKDKPNVERSFASAQNYYPYLFKNKGIDSIDELNKRSEEIIDEYNKHFQKTEGNKETKFIKNDHNSNIYDFSLRIRRRVNNGVVMYKNKMLAPYDEHNKRLMFFSQNGKDINLCLDVNQNLYFEINNKKYIAKVVEESELNETEIYALAKGWDISIPQVHVIAKAIVNSRKFTLAQSQLRHFPNEILKNENAQKIIKILERSEQILLKLYNLLEKDIEWKDKVAFINN
>NZ_CP047225.1|WP_167844922.1|49339_49768_-|ribosome-assembly-cofactor-RimP
MDYKKILNEHFGDLILDAKMVFDPESSLEITINTDSLDVVTEQSRKIVDFLESQTWFKDSWNVIVLSKGTDLNVNLDNVTNYIGQMVTFNLHKSFEGQNVFNVEILEDLGDEILVRWNNKGNFRKIKLNKSNITKAEKYIKF
>NZ_CP047225.1|WP_167844933.1|67649_69629_+|NAD-dependent-DNA-ligase-LigA
MNLEKDKIQEKISKLVAEINKWNNEYYNLDNPTVSDQTYDKALRELEELEQKYPELILEDSPTQKIGGFASNKFQKYTHKKPMLSLAKAYTFEEIEKFCENAQKLAGNQNLSYSLEPKIDGLSIALFYQNGQLIRAVTRGDGKIGEDVTENIYQIKSVPKQIDYKNELEVRGEVYLSKSVFQEINNNLEEQGLKTFANPRNAAAGTLRQLDAKIVKQRKLDAFLYQLVEPELHNIATQEQALEFLSKHKFPLNDYHKIANSLDEIITNIEAFEKIKNDLDYECDGFVIKINQFFLYEKLGYTAKFPRYAIAYKYESESANTEIKDIIATVGRTGKITYVANLEPVNLNQTTVSNATLHNYEFIKDMEINIGDVVKIIKSGEIIPKVIELVTKQTDSVFPKVTNCPSCNSVLVHVDNLVDQFCTNEDCPSKIVKKLIHFVSRNAMNMQVIGESNVELFYNLGIVKKVTDFYQLHNHKDLLLSQPTYKDKKVNNILDSIENSKNVSFAKTLFALGIKHIGSQVAELIAQKVGSFKELLELNLDSLALIDTIGDKIVSSLKEFISKDENRAIILELDQILNYQKVTSGNLLSGKTFVITGTLSKDRNYFKDLIVQNGGKVSSSVSSKTSFLLAGENAGSKKDKALESGVTIIDEDAFNEMIK
>NZ_CP047225.1|WP_129620195.1|69680_70031_-|50S-ribosomal-protein-L19
MRNKLIELVEQSQLRTDIVPFQTGDNVRVHVRIREGEKERIQVFEGLAIVNKESGTRQTFTVRKISYGVGVERTFPLNSPLIAHIEVVRSNKVRRQRLFFMRSRQGKSARLKEIKR
>NZ_CP047225.1|WP_167844934.1|70020_70704_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKINFLTLFPKYFEPFINESIIKKAQEKNLLDFEVVDFRDFSKSKHRKVDDEIYGGGHGLLLQVEPIDLALDSLKDRGGYKILVTPQGKTFNQEIANELAKHEQITFISGRYEGFDERVVELCDLELSIGDYVLTGGELPSMVMADSVARLVPGVIREESHVYDSFQGNGLLDYPQYTRPREYKGMKVPEVLFSGDHKKIEEWKSNAQYQKTLKNRPDIIERIKNEK
>NZ_CP047225.1|WP_129620197.1|70710_70959_-|30S-ribosomal-protein-S16
MVKIRLKRMGSKFSPVYKIVAADARAPRDGKFIEALGHYNPLNDEVVLNKEQILKWLSQGAQPTATVANLFKAHKLTSELKK
>NZ_CP047225.1|WP_167844935.1|71080_71623_+|tRNA-(cytidine(34)-2'-O)-methyltransferase
MLNIVLYQPEICPNTGNIIRTCFALGAKLHIIKPLGFDLHPKYLKRAGAGRMLSDIPHEVHANYEQFYKKYHDKHIYYITRYGQKTYTDVNYKQTYEQNGEIWLMFGRESTGIDKDILFNNLERCLRIPMVSAMRSINLANCVSILGFEVMRQLDFQDLSKFEVEKGKDFLINYGNNKQN
>NZ_CP047225.1|WP_167844936.1|71600_72326_+|RNA-methyltransferase
MEITSKTNPKVKFIRKLQNKKFRQESSNFVIEGEHLIKEALDSNLIIEIFENIDSKEFLFDGSTKVTREIIESVLPSKNPQNCFALCKFKHEQKLGQKVIVLNNLQDPGNVGTIIRLAKAFDFDSVIIENLDFYNDKVLRSSQGAFFSVNLIATKNANQTMNLLREKGYKIYHTLLDKNALPLNNVSFESEKLAIIFGNEGNGIDPSLVSENDTKVYVPISFESLNVACCAAIVLNKVRNG
>NZ_CP047225.1|WP_167844937.1|72328_72610_+|hypothetical-protein
MKEKEILELALQQLSEISFTKSVNGLSKNEVLSFLESLKEKMELLDSHLEELLEKNEELKEENDKLKNQMQMLNFENKRLKSYTNIKDKNESK
>NZ_CP047225.1|WP_167844938.1|72596_73454_+|ribosome-biogenesis-GTPase-YlqF
MNQNKINEEFNNLIQWFPGHMSKAMKDIKESANLADLFVVVLDARCPISSYNEDFDAIQPQKPRLFIITKSDLMDKSKKDQIAKRFGNENLLWLDLRQKSSKKIILNKIKQILKEKIARNKAKGMLVSRLKSFVVGIPNCGKSTLINLVSSKSRLKVADMPGVTRVKQWVMDGEFWFLDTPGILLPKFDDQENAIKLLAIGSIKNDIFPLEFVAIQLWALVSKYYPEKLIDLGMTPSEDTVQIYGLFHEYAEKFGFLKEKGKVDLQKAQINFINWVKGLKGVTYD
>NZ_CP047225.1|WP_167844939.1|73506_74628_+|molecular-chaperone-DnaJ
MKNKRDYYEVLGVSKTATEAEIKKAYRKLAMKYHPDKTDDPKATEIMQEINEAYEVLSNADKRRMYDQYGHDGMNAQAGGFGGFEGFEGFSGDFSDIFENIFSGFGGFSSRRNHNPNAPKRGDDIKTTITIPFLEAIHGVVKKEEYPKYDTCPDCNGTGAETPSDIEQCNECHGTGYVEKIQRGIFGAQKVHTTCSKCSGKGKIIKKACKKCRGNCFVKVIKPVTIPISEGVTDGTMLKLTGYGNPGQNGGPAGDLYIEIRIKPHPFYKRHNHDIYLDFPVSFADILLEKTILVPTPFGDQQIKLKKSYLDSQVVKISGKGVKTKYGSGDLKLNLRIIIPDYGKKDKKKITEVLETIQDDTNENFVKEVNKAK
>NZ_CP047225.1|WP_167844940.1|74693_75425_+|class-I-SAM-dependent-methyltransferase
MKLTEKYIQVYDTDSSLIHYTSAISSVGILDAESKILKMLQLPKKALVADLGSGPGRFAFGANKLYPAYQIDCYDLSDKSIQIGKDLANKMNLKNISFTKADLTEKGCLKPSYYNLCFFTFNSLMTIPGHNNKKKALLNAYNALKSGGYLVFTAPTISGDINRENFIKNNFSNEHERKSDISYQIDNKLGVLCHYEKEEIFQMLEQINLPKPIFASKRDEFAIETKEAKIFSDNAVYYIIKKP

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Crispr_ID: NZ_CP047225_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047225_3

784312-784421

Orphan

Consensus_repeat	Method
GAACTAATCTTGGTTACACTATTTATTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047225_3

>merge|NZ_CP047225|3|784312-784421|CRISPRCasFinder
GAACTAATCTTGGTTACACTATTTATTATTATGAAGGTACAGGTAATGGCGTCACCGGAAATAGTAACAAATTAATTGATAGAACTAATCTTGGTTACACTATTTATTAT

>NZ_CP047225|3|3|784312-784421|CRISPRCasFinder
GAACTAATCTTGGTTACACTATTTATTAT	TATGAAGGTACAGGTAATGGCGTCACCGGAAATAGTAACAAATTAATTGATA
GAACTAATCTTGGTTACACTATTTATTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047225.1\|WP_167845067.1\|778418_779597_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP047225.1\|WP_167845371.1\|794924_795581_+\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	unknown	unknown	gnl\|CDD\|237344
NZ_CP047225.1\|WP_129620633.1\|794148_794430_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP047225.1\|WP_167845019.1\|789483_791142_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP047225.1\|WP_167845367.1\|780832_782530_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367881
NZ_CP047225.1\|WP_167845365.1\|776533_777805_-\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|377432
NZ_CP047225.1\|WP_167845370.1\|788188_789061_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP047225.1\|WP_167845609.1\|792330_794064_+\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|225579
NZ_CP047225.1\|WP_167845611.1\|796485_797190_+\|L-ribulose-5-phosphate-4-epimerase-AraD	unknown	unknown	gnl\|CDD\|236181
NZ_CP047225.1\|WP_167845372.1\|795555_796449_+\|L-ribulose-5-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|237307
NZ_CP047225.1\|WP_167845608.1\|791218_792274_+\|phosphotriesterase	unknown	unknown	gnl\|CDD\|224649
NZ_CP047225.1\|WP_167845366.1\|780329_780797_+\|Sua5/YciO/YrdC/YwlC-family-protein	unknown	unknown	gnl\|CDD\|223088
NZ_CP047225.1\|WP_167845361.1\|772486_773080_-\|DUF3137-domain-containing-protein	unknown	unknown	gnl\|CDD\|378641
NZ_CP047225.1\|WP_167845368.1\|782808_783012_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_167845610.1\|794426_794912_+\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|182417
NZ_CP047225.1\|WP_167845607.1\|785467_788122_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|225955
NZ_CP047225.1\|WP_167845364.1\|776003_776378_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|214702
NZ_CP047225.1\|WP_167845363.1\|773710_775642_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP047225.1\|WP_167845362.1\|773410_773548_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047225.1\|WP_167845605.1\|771496_771718_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223246

Protein	Function_ID	Function_description	E-value
NZ_CP047225.1\|WP_167845371.1\|794924_795581_+\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	gnl\|CDD\|237344	PRK13306, ulaD, 3-dehydro-L-gulonate-6-phosphate decarboxylase.	6.64715e-133
NZ_CP047225.1\|WP_167845372.1\|795555_796449_+\|L-ribulose-5-phosphate-3-epimerase	gnl\|CDD\|237307	PRK13209, PRK13209, L-ribulose-5-phosphate 3-epimerase.	9.39903e-154
NZ_CP047225.1\|WP_129620633.1\|794148_794430_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.15956e-26
NZ_CP047225.1\|WP_167845019.1\|789483_791142_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	8.65423e-18
NZ_CP047225.1\|WP_167845367.1\|780832_782530_-\|hypothetical-protein	gnl\|CDD\|367881	pfam04231, Endonuclease_1, Endonuclease I. Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor.	7.67103e-49
NZ_CP047225.1\|WP_167845365.1\|776533_777805_-\|deoxynucleoside-kinase	gnl\|CDD\|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	4.13912e-14
NZ_CP047225.1\|WP_167845370.1\|788188_789061_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.76882e-41
NZ_CP047225.1\|WP_167845609.1\|792330_794064_+\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|225579	COG3037, SgaT, Uncharacterized protein conserved in bacteria [Function unknown].	2.78892e-114
NZ_CP047225.1\|WP_167845611.1\|796485_797190_+\|L-ribulose-5-phosphate-4-epimerase-AraD	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	6.98868e-144
NZ_CP047225.1\|WP_167845608.1\|791218_792274_+\|phosphotriesterase	gnl\|CDD\|224649	COG1735, Php, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	2.18633e-120
NZ_CP047225.1\|WP_167845366.1\|780329_780797_+\|Sua5/YciO/YrdC/YwlC-family-protein	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	1.48935e-30
NZ_CP047225.1\|WP_167845361.1\|772486_773080_-\|DUF3137-domain-containing-protein	gnl\|CDD\|378641	pfam11335, DUF3137, Protein of unknown function (DUF3137). This bacterial family of proteins has no known function.	0.00570902
NZ_CP047225.1\|WP_167845363.1\|773710_775642_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP047225.1\|WP_167845610.1\|794426_794912_+\|PTS-transporter-subunit-EIIA	gnl\|CDD\|182417	PRK10372, PRK10372, PTS ascorbate transporter subunit IIA.	2.21303e-43
NZ_CP047225.1\|WP_167845607.1\|785467_788122_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|225955	COG3421, COG3421, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP047225.1\|WP_167845364.1\|776003_776378_-\|HNH-endonuclease	gnl\|CDD\|214702	smart00507, HNHc, HNH nucleases.	4.75693e-05
NZ_CP047225.1\|WP_167845067.1\|778418_779597_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	3.19284e-26
NZ_CP047225.1\|WP_167845605.1\|771496_771718_+\|hypothetical-protein	gnl\|CDD\|223246	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	2.21496e-09

>NZ_CP047225.1|WP_167845368.1|782808_783012_-|hypothetical-protein
MYNKIHSSYIDVPLSSKLSQLLITDLLFQALILEDSNFENKLHNSIKVIDQRLEIRKENISNKIHKK
>NZ_CP047225.1|WP_167845367.1|780832_782530_-|hypothetical-protein
MAPTSMVFTPFILTSCNEPKTEKETTPKNTTGETTKPETATSTNPASSNNGSSNETPAPTNPSTGGTTNPENPTPENPTNHENGSGTSASADTSTPTTPENGSGSATTNNLIDSTSQFDFNSSLDKEMLKNKILENQNATGTKKPNNFVYDRKAQKVLIAPQKINWKESSSWPVIATVKSSFIGSKQLVNAEEPTYTDSSGKTKLSSFLNVTIENNVAKFTFKTAIYSNSGNHTIDTETHYFTVDLNSSSASSSSNSNTPNTTEATNPPSSSLNQPNTSNTTIHSSNSNINYLYDSSNNYYASLEGKRGLELFQALTKLQKSKSTKFGYGNLEGFYNGSNSPFRDKYYEKDGSLLDIYSENPDGIDPYVYPDYKFDQRAKKEGDGTNREHIVPQSWFNKVEPIRSDPFFVWPTDITVNHDRENLPHDDVLQETQIFRNGAKKGNNSFGSEVFEPVNAFKGDIARAYFYFIQTYNQDSIFYSDANKIFITSFPFMNNHYLNVYSKWNSEDPVDQFDIDRNNATAAVTNGRRNPFTDYPNLVENLFGENPKPFHNLGVLVGIKENSN
>NZ_CP047225.1|WP_167845366.1|780329_780797_+|Sua5/YciO/YrdC/YwlC-family-protein
MNKNYDDIYIFTTDTVCGIGCKVFSGSISKLFELKNRPIEKKIMILVSSIKMAQSFNQWNEKATEAALKYWPGAYSIIINDQGFRMPNNAKLLKFLEENGPMYVTSANKSGMSPIDIKDAKVVFPQVTNVFDFGKPNGKASTIINLDTGEIIERN
>NZ_CP047225.1|WP_167845067.1|778418_779597_-|IS30-family-transposase
MKKLIDLSKQNIICVKNNAENFRHFIIKESDDEIKRLHSNVSSKRLLRDKQISILLMWEIILKVLLLNSVSKAAKYFGYQSRTVKQKMEIMIEKNDYHKSLKNKVICKICGSKIFITKFLSFRKLSNHLLSYKTKRLMIVSESQKNKWSHFKKYWNDVTKELRKKASKNSKNIKCKMSVKFMINSFKQTNQNAFCPTFSTVYKALKQQRIKLSFDPLLYLSRGGYTKTTLKQGKRSLIHARDVKYRPKEANLRLEKGHFEADTVVGKREDKFVLFTLLDRKTRELYIALTKRDAKSINKALRMLIRKYNLEIKTLTVDNGSENTLLHKVVGKKKLFKCKPYASYQKGSIENAHRYIRRFIPKGKSFNSLTQEYVFWIKEQIDEYKRILAIEN
>NZ_CP047225.1|WP_167845365.1|776533_777805_-|deoxynucleoside-kinase
MQKQILKNKNMKYFLIGLTFIFLTFLSLYSISDNTWAWQTGQLYQKILAIGSGLSGVFGLISTWYFYKRKALAFPFGIIHSLCFGLFCLSVNLTADFILTLFIFVPIFSTLWYSMVINKKVKMFILNIYSTIFFSIVFVIFFVLFYFVTPIVNLGWAKILNQESAEYGKNFNYYWTARIISTTINAVSAVALIMMILGFYQTWALWIVKNLLAIAFFSGIGFVSISVVVINVFYTCLSIYIFFKTKNIKPKILIAFGGPGATGKTTVINNLSSFFKENEFELLDETSFIQSTKQNEAYFVKYMEDIPQRAYQTQKLFFKYRRKQLYRMQLADSNYIIDRYPIDDMLFSEVHIKLGFFSKIQKIKWKIIEILTVLLLKSVKPLDHFFIITADYEEIKKEDKKEVDKINLEKLKLFQEMIDFLLK
>NZ_CP047225.1|WP_167845364.1|776003_776378_-|HNH-endonuclease
MANSNITKEKAEKIWESYYGTQTRVKDFAGRTMNKSAFNNRKSAFGWNIHHVKPISLNGSNDIENTIPVHILSNSEFGDKNSAKVNGTFYQWQKMPGKRTAGIIYELGEDVILSPNKKFIKNKK
>NZ_CP047225.1|WP_167845363.1|773710_775642_+|ribonuclease-J
MEATRIIPLGGVEEIGKSTLIVEHKNHIFLIDAGIKFADTYNTGVKGIIPNYEYLNGKGKKIEGLFITHGHEDHIGGVVYLVKQTKIKKIFAPRIAIQYLKLKFEEHGITRPIEFIEMQKADVYHFANNECKVDFWTAQHSIPDAFGIRVTTPNGSIMCTGDFRFDYTPIGNLTDFARLDQIGKEGLTALLSDSTNAMRPKHSPSESDILTDIEAHMLNAKKKIIITTFASNLTRVKVIIDLAVKLKKKVICFGRSMIQGIKIGRKLGYINVPDGVIIDKKQLPNTKPSDLVILTTGSQGEQLAALSRMSYGKHASINIEKGDVVIFSSSPIPGNRMIIELLVNRLYKLGAIIKENGVDGYLHTSGHAYRYEHDKIFQLTKPKYFLPYHGEFRMSVAHGNTAIENGVKKENVIIIRKGVVYNMLKGEIFPTDEKVDFGPVYIDGNTVLSLSSDTLKQRIQLKDSGFVNIVFVIDAKTNSIVTRPQIITRGAFFVKTSKELVEESKRVAHGAVLYHIKNNKNWTIAELEKIVIERLSTLYYKEKRRDPIIIPTFILTNEKPDNVVGKTKINFTNSRTFVAESENEEEQNNQANRNNKDKKKNKPKQNKRKTNLKGQKELLNEVKKSIFGDIEVDQLDIDEEDEK
>NZ_CP047225.1|WP_167845362.1|773410_773548_-|hypothetical-protein
MRIIKDPMSSNEFFTKFKEEMMPFIKENVEKRIKDLRLQKQEKEE
>NZ_CP047225.1|WP_167845361.1|772486_773080_-|DUF3137-domain-containing-protein
MYYHNVSIPSDAKIIDITPPRKLLLHNKYMVVTQNVLYRWVEGSGKNQRERNRWNSYIKVDTSILKDRQFNFTLFRGNNPLGNKVKLENDRFNKIFKLTTNNELKIRQMYTPLAMETSVAWYDKERKNVKFPEPSISSIASREYVMFSNIGEKGFMNLDFAFSVKSEKVFKAIVKDIYSDSFSFYYLIAFLHFSLYL
>NZ_CP047225.1|WP_167845605.1|771496_771718_+|hypothetical-protein
MWNWTYSFEVASAFGTTGLSSGITASLNTASKITILIVMFIGQFGISSTLLVWKRKRNNHRSYEYAEDDVAIG
>NZ_CP047225.1|WP_167845607.1|785467_788122_+|DEAD/DEAH-box-helicase-family-protein
MKMGFLFESINVHKKYLNKKIEIPSIIFQGLSKKIQLRDYQKEAIENFVIHFESENSEDNKTKNIHTLFHMATGSGKTVIMASLILFLYEKGYRNFLFFVNQTNVIEKTKDNFLNNLSNKYLFNDEINYLGKKIKIKEVQNFQEIQENNLIDDDINICFTTTQKLHLDLFITRENSLTYDDFENKKIVFISDESHHINSSTKKTGKEKELENSWETSIMNALEKNKDSIMLEFTATCDINDKNVKEKYIDKIVFDYPLKYFRESGYTKDFENFATNSTLWDRTLIALVLSEYRKFLFSDLKINQKPVILLKSQKIQESEKFYEEFNTKIGKLKAEELEKLYSSDIEILKKALDYFKNKKGSLNLLKDSLINSFKKENLVIMNQKTDNTKEKQLLVNSLEDSSNHIRAVFTVDMLNEGWDVLNLYDIVRLYDTRQGNNKSGKVGAYTIKEAQLIGRGARYCPFVINDEQEKFKRKYDNDINNEYRILETMYFHSKNDSKYIYELKKALVYTGMENETSKILTYKVKNSFKETDFFKNGIVFSNRRVIKDRKTIKSIDDDIKNKVFTYEIKDVRGKVFSLLKDEFDQNFNYQKEKNVFEIKLKDLDYNIVLGASECFDKLKFSFLKERFPILKTLREFLTDEMFLGNVTIKFIYSEGKRISGNDIFSSLKIVFSEVERYISSIKDEYFGTNVFTAKNIRDVIKDKKIKVTKIIENGYGDAQSNSLNDEIAMNLEDKKWYVYNENYGTSEEKAFVKYFSEHIQKDLNEKECEFYLVKNERNSELAIYSFEDGSRFEPDFFLFIRKKKAKENVFSNIQTYIEPKGQHLIEHDLWKEKFLLEINEKAELNLHKQESDYGIIGVPFFNNELKNVKDKFKAVFDSFIIEKL
>NZ_CP047225.1|WP_167845370.1|788188_789061_-|MurR/RpiR-family-transcriptional-regulator
MNKIKKEVSRPIINSISGLSKTDHNIIEFINKFQEPVFDLTINDLAEFSGTSVSGVSRFVKKYNFKNYQEFKVQVNLIIQKFEKNYTINNNDSFSTIISSHRFAIDSLYNEVVLEKIKEAAKIINQSNKILIQGSGSSKRISDNLYANILKIGKTPISNSDFHVFFPSISNCNANDVLILFSNNLNTPEQIFSIQIAKENKVKIIVITSNEDNEYDQFFDVKIVYNKIHSSYIDVPLSSKLSQLLITDLLFQALILEDSNLENKLHNSRKVINRWLEIGKENISNKIHKK
>NZ_CP047225.1|WP_167845019.1|789483_791142_+|IS1634-family-transposase
MASVQIIKKNKTQYVRIVESYWDKETKKPKIREVKFLGKLEDLTKDNPNFIEELKESVSSKKNQKQKDRNEQILQIMNSLKLDKFKGTEIKGYGNLVYEEIINYLELPNFLNDLQKKNSRSKYDLASITKMLILTRILEPSSKRSSVEKIKKYWYKFDDSLKDIYRSLEFLQDKKADILKHLNEQFVDKINRNLTFCFYDVTTVYFESFIPDELRKFGFSKDNKVNQTQVVLGLLIDDMGIPIYYDLFPGNTSDFLTLKPVLENIKRDLGIDKITIVADRGLNSKSNLLAIKQAGYDYIMAYKIKGKENKIEGIYDLDTYKMMYEEFSVKKQDHKELFKSNNTFYEIDNKLILTFSGKRQRKDKKDRERLIKKAEKLLNLSAIKSEMKRGGKKYLKLSANEVELDHQAILKDEAADGFYGILTSHEDMDEMEIIEQYSKLWKIEESFRVMKTNFEVRPIYLSTEKTIKGHFLICFLALTIQRYLEFVLEYCGYPLPTNKIIESIKNQKLSIIPEINTYIKSEESEEFKTILKVLGLKPIETIGKCEDVKFTI
>NZ_CP047225.1|WP_167845608.1|791218_792274_+|phosphotriesterase
MGKFVRTVLGDISPKDLGVTDCHDHFIKNGGPEVEEHIDFLMLDVEASKKELKEFLERGGKTIVTMDPPNVGRDVHRTLEIAKAFEGKANIIMSTGFHKAKFYDKWSSWLAVVPTDDIVKMCVAEIEEGMDEYNYSGPVVKRSKAKAGIIKAGTGYAAIDRLELKALEVAARTSIQTGCPILVHTQLGTMALEVAQHLIGFGANPRKIQISHLNKNPDKYYYEKIIKETGVTLCFDGPDRVKYYPDSTLAENIKYLVDKGLQKHITLSLDAGRILYQRNYGVTKGKQTFGLAYLFDRFIPLMKQIGVPEDAIEDMLVNNPREILAFDEPRVYDESKVPAELKELKKELKLS
>NZ_CP047225.1|WP_167845609.1|792330_794064_+|PTS-ascorbate-transporter-subunit-IIC
MTDGTKKTIKTLAILFAVIAVFVVGMLITMTIAHFSLKDGTGFNGAGVVFYLKRVIIDNFLGVNAFLIGSIVFIGYLVLGRGIRDAILGFIKSAIGILVLSIGSGILVGMSKEIFVQISKLGAGVTSLDPYTGWTSAENFLKALNGQNISAFISYALLIGFAINLVLVVFRRWTNVHSIMLTGHVMFQQSAMVVAGITVSLFLSNTALSYGAQTGIILISGLILGLYWGIGSTATIKGSDAVTQGAGFCVGHQQMLGLSLAYKIGRFFGKKEQSAENMVLPKKLKVFEDNIFTQSLIMLILFTILIAIIAAKNPIGSVFDGQSYKWTKVLLPNWAVDGNVFFIFNILLGALKLVGSILVIQTGVRMFVSELQQSFQGITEKVAPGAVVAVDVAATYGFSSNSVTYGFVSGTIAQFIATGLLIGLSQINFGPHFKLDITIPLFITLFFNSGSIGVFANASGGFKAALIVPAIFGFGEILLSSLGLSLLKMHEAFVQNAPKVSDAAHVFGTGYLGMFDWNVFFAPMIGFGSLHPVVGGIVFTGAIGSLVAFSQIVDSGRQSEPTFLQKMFKLNIQTYNH
>NZ_CP047225.1|WP_129620633.1|794148_794430_+|PTS-sugar-transporter-subunit-IIB
MKVLCLCGSGMGTSMIIKMKVSQALKELGINGSVEALGLGQGKSVANNYDVILCTQNFVSEVNTKAQVYGLKNIMNLDEIKAALNDAKEKGIN
>NZ_CP047225.1|WP_167845610.1|794426_794912_+|PTS-transporter-subunit-EIIA
MMERLNLLESLLAHNSIEIQQEASSWKEAIKLACKPLEKAGVITEKYYQEILDSTEKYGPYYIIAKNFAMPHASDTEHAVLSNGFSLVTLKEPVKFDDGQEVKILMCLAAKDGEVHTQVAIPQIVAVFEDETNIDKIASSKTKEEVVEIIKSVDYTKYVIQ
>NZ_CP047225.1|WP_167845371.1|794924_795581_+|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD
MGKPLLQIALDNLTIEDAINSAKKVEKYIDVIEVGTILIASEGKKAVKALKEAFPDKIIVADGKIADAGKVFGKMFFENGADYTTCICAAELPTIVETMKVAKEYKDTNEVQIEMTSNFTWEQAKAWQEANVPQVVWHRSRDSQASGVKWGEKDINAVDRLSKMGFKVTVTGGVALEDIKLFKDIPIYIFIAGRSLRDAENPELAAKAFKDEFDKYWS
>NZ_CP047225.1|WP_167845372.1|795555_796449_+|L-ribulose-5-phosphate-3-epimerase
MNLTNIEVNMKKNRLIGIYEKAINNKFSLEEKILIAKASGYDFMEFSVDESEQRLQRLSWSDAKIQQVQMLLVKHQFNFNSMTLSGHRKYPFGSKDPKIRRKALWIMEKAIILAKKLGIRTVQLAGYDVYYENSDEETKKYFYQGMQKALQIAAKHSVMLAFEIMDTRFMGTISRALTWVNKLDSIYIGIYPDLGNVYQWAHKEDLENELVIAKNKLVAFHFKDTVPGKFRDTPFGSGTVDFEYMLKILKKHKLNQPIMIEMWSLNDPNETKEEAIKYILDAKEFYEKCWSNVDGDN
>NZ_CP047225.1|WP_167845611.1|796485_797190_+|L-ribulose-5-phosphate-4-epimerase-AraD
MELLKKEVYEANLKLVDYKLVIHTWGNVSGITRDRKFMVIKPSGVSYDKLSYHDMVITDLENNIYDSKYKPSVDAPTHTLLYKANPDMKGIVHTHSKHAVAFAQAGKDIPCFGTTHADNFYGSVPCARALTPAEIDSEYEHNTGLVILETFKNRNLDFKATPATLVKEHGPFAWSFKSPLDAVNMALTLETVAEMAINTLIVSNLDSHQAQDALITRHYLRKHGKNATYGQEKH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	KY779848	Staphylococcus phage qdsa001, complete genome	34832-34860	6	0.793
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP031899	Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence	47847-47875	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_KM085450	Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence	107745-107773	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_KM085449	Escherichia coli O104:H7 strain RM9387 plasmid pO104_H7, complete sequence	31018-31046	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP015246	Escherichia coli O91 str. RM7190 plasmid pRM7190-2, complete sequence	89247-89275	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP031907	Escherichia coli O91:H21 strain FWSEC0008 plasmid unnamed17, complete sequence	69056-69084	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	CP042949	Escherichia coli strain ATCC 51435 plasmid pB2F1, complete sequence	1626-1654	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP009107	Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence	107744-107772	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP009105	Escherichia coli strain RM9387 plasmid pO104_H7, complete sequence	31016-31044	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP028382	Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence	126778-126806	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027343	Escherichia coli strain 2014C-4587 plasmid unnamed, complete sequence	71880-71908	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027463	Escherichia coli isolate 07-4299 plasmid unnamed	41366-41394	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027441	Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence	63671-63699	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027453	Escherichia coli strain 2014C-3338 plasmid unnamed, complete sequence	45262-45290	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027372	Escherichia coli strain 2015C-3905 plasmid unnamed	68656-68684	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NC_007365	Escherichia coli EH41 plasmid pO113, complete sequence	132835-132863	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP023542	Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence	107749-107777	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP024291	Escherichia coli O178:H19 strain 2012C-4431 plasmid unnamed2, complete sequence	43576-43604	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP023164	Escherichia coli O22:H8 strain RM10809-3 plasmid pRM10809-3, complete sequence	10796-10824	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	CP027581	Escherichia coli strain 2013C-4282 plasmid unnamed2, complete sequence	14826-14854	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027375	Escherichia coli strain 05-3629 plasmid unnamed2, complete sequence	86591-86619	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP015239	Escherichia coli strain 2011C-3911 plasmid unnamed1, complete sequence	40212-40240	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027311	Escherichia coli strain 2014C-4135 plasmid unnamed, complete sequence	68308-68336	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027585	Escherichia coli strain 00-3076 plasmid unnamed, complete sequence	41662-41690	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027370	Escherichia coli strain 2014C-3307 plasmid unnamed2	88962-88990	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027367	Escherichia coli strain 89-3156 plasmid unnamed, complete sequence	44462-44490	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP027451	Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence	44886-44914	7	0.759
NZ_CP047225_2	2.1\|65552\|29\|NZ_CP047225\|CRISPRCasFinder	65552-65580	29	NZ_CP028121	Escherichia coli O43 str. RM10042 plasmid pRM10042-2, complete sequence	29392-29420	7	0.759

1. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to KY779848 (Staphylococcus phage qdsa001, complete genome) position: , mismatch: 6, identity: 0.793

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
taattgtgtttttgcaatttctgatttat	Protospacer
  ************** *******   **

2. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP031899 (Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

3. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_KM085450 (Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

4. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_KM085449 (Escherichia coli O104:H7 strain RM9387 plasmid pO104_H7, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

5. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP015246 (Escherichia coli O91 str. RM7190 plasmid pRM7190-2, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

6. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP031907 (Escherichia coli O91:H21 strain FWSEC0008 plasmid unnamed17, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

7. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to CP042949 (Escherichia coli strain ATCC 51435 plasmid pB2F1, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

8. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP009107 (Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

9. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP009105 (Escherichia coli strain RM9387 plasmid pO104_H7, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

10. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP028382 (Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

11. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027343 (Escherichia coli strain 2014C-4587 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

12. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027463 (Escherichia coli isolate 07-4299 plasmid unnamed) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

13. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027441 (Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

14. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027453 (Escherichia coli strain 2014C-3338 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

15. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027372 (Escherichia coli strain 2015C-3905 plasmid unnamed) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

16. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NC_007365 (Escherichia coli EH41 plasmid pO113, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

17. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP023542 (Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

18. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP024291 (Escherichia coli O178:H19 strain 2012C-4431 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

19. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP023164 (Escherichia coli O22:H8 strain RM10809-3 plasmid pRM10809-3, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

20. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to CP027581 (Escherichia coli strain 2013C-4282 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

21. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027375 (Escherichia coli strain 05-3629 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

22. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP015239 (Escherichia coli strain 2011C-3911 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

23. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027311 (Escherichia coli strain 2014C-4135 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

24. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027585 (Escherichia coli strain 00-3076 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

25. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027370 (Escherichia coli strain 2014C-3307 plasmid unnamed2) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

26. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027367 (Escherichia coli strain 89-3156 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

27. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP027451 (Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

28. spacer 2.1|65552|29|NZ_CP047225|CRISPRCasFinder matches to NZ_CP028121 (Escherichia coli O43 str. RM10042 plasmid pRM10042-2, complete sequence) position: , mismatch: 7, identity: 0.759

gtattgtgtttttgcattttctgaaagat	CRISPR spacer
gatacctgtttttgccttttctgcaagat	Protospacer
*   . ********* ******* *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

192632 : 370077

115

unidentified_phage(11.43%)

tRNA,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167845019.1\|192632_194291_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_167845020.1\|194933_195245_+	hypothetical protein	NA	NA	NA	NA
WP_167845021.1\|195511_196780_-	HNH endonuclease	NA	NA	NA	NA
WP_167845022.1\|196766_198545_-	DNA (cytosine-5-)-methyltransferase	M1PSQ0	Streptococcus_phage	2.2e-85	47.8
WP_167845023.1\|198740_200105_+	signal recognition particle protein	NA	NA	NA	NA
WP_167845024.1\|200568_200748_+	hypothetical protein	NA	NA	NA	NA
WP_167845025.1\|201052_201430_-	hypothetical protein	NA	NA	NA	NA
WP_167845589.1\|201823_203617_+	alpha-amylase	NA	NA	NA	NA
WP_167845026.1\|203725_204151_+	hypothetical protein	NA	NA	NA	NA
WP_167845027.1\|204186_206649_+	hypothetical protein	NA	NA	NA	NA
WP_167845028.1\|206654_207170_+	hypothetical protein	NA	NA	NA	NA
WP_167845029.1\|207169_207505_+	hypothetical protein	NA	NA	NA	NA
WP_167845019.1\|207525_209184_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_167845030.1\|209251_212158_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_167845031.1\|212157_213114_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_167845032.1\|213117_214326_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.0e-25	33.3
WP_167845033.1\|214306_215011_+	hypothetical protein	NA	NA	NA	NA
WP_167845034.1\|215127_216870_+	alpha-amylase	NA	NA	NA	NA
WP_167845035.1\|216871_217750_+	ROK family protein	NA	NA	NA	NA
WP_167845036.1\|217787_218483_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_167845037.1\|218678_220778_+	alpha-amylase	NA	NA	NA	NA
WP_167845038.1\|220791_222441_+	sucrase-isomaltase	NA	NA	NA	NA
WP_167845039.1\|222440_224810_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_167845040.1\|224802_225483_+	beta-phosphoglucomutase	A7ITQ4	Paramecium_bursaria_Chlorella_virus	3.7e-12	30.1
WP_167845041.1\|226691_228320_+	ABC transporter permease	NA	NA	NA	NA
WP_167845042.1\|228319_229021_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-17	31.1
WP_167845043.1\|228998_229955_+	hypothetical protein	NA	NA	NA	NA
WP_167845044.1\|229941_230859_+	hypothetical protein	NA	NA	NA	NA
WP_167845045.1\|230848_231727_+	hypothetical protein	NA	NA	NA	NA
WP_167845590.1\|231921_233001_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.9e-32	32.8
WP_167845046.1\|234484_235048_-	ECF transporter S component	NA	NA	NA	NA
WP_167845047.1\|235402_236560_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	NA	NA	NA
WP_167845048.1\|236541_237288_+	type III pantothenate kinase	NA	NA	NA	NA
WP_167845049.1\|237329_238166_+	HAD family phosphatase	NA	NA	NA	NA
WP_167845590.1\|238281_239361_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.9e-32	32.8
WP_167845050.1\|239622_246582_+	hypothetical protein	NA	NA	NA	NA
WP_167845051.1\|246621_247857_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.3e-68	37.4
WP_167845052.1\|248471_249332_+	DegV family EDD domain-containing protein	NA	NA	NA	NA
WP_167845053.1\|249733_250294_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_167845054.1\|250293_251232_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.7e-57	38.2
WP_167845591.1\|251460_252297_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.6e-15	30.4
WP_167845055.1\|252551_253103_-	ribosome recycling factor	NA	NA	NA	NA
WP_167845056.1\|253104_253824_-	UMP kinase	NA	NA	NA	NA
WP_167845057.1\|254004_255267_-	LlaJI family restriction endonuclease	M1PG77	Streptococcus_phage	5.1e-68	37.5
WP_167845058.1\|255267_257955_-	AAA domain-containing protein	M1NSM1	Streptococcus_phage	1.7e-89	39.1
WP_167845059.1\|257942_258965_-	adenine methyltransferase	A0A1P8BMM5	Lactococcus_phage	7.6e-30	31.9
WP_167845060.1\|258964_259906_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A193H0E0	Shigella_phage	8.6e-36	36.4
WP_167845061.1\|260108_261296_-	elongation factor Tu	A0A076FFS6	Aureococcus_anophage	5.9e-34	27.3
WP_167845062.1\|261538_262312_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_167845063.1\|262311_263106_-	TatD family hydrolase	NA	NA	NA	NA
WP_167845064.1\|263107_264466_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_167845065.1\|264514_265210_+	hypothetical protein	NA	NA	NA	NA
WP_167845066.1\|267185_276089_-	hypothetical protein	NA	NA	NA	NA
WP_167845067.1\|276787_277966_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.5e-16	34.6
WP_167845068.1\|280696_282355_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_167845586.1\|282472_284071_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_129620331.1\|284353_284566_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_167845069.1\|284571_285690_-	DNA polymerase III subunit beta	NA	NA	NA	NA
WP_167845070.1\|285837_287193_-	ATP-binding protein	NA	NA	NA	NA
WP_167845071.1\|287427_289632_+	AAA family ATPase	A0A2K9V9X6	Bandra_megavirus	1.1e-38	27.8
WP_167845072.1\|289622_290177_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_167845073.1\|290163_291042_+\|tRNA	tRNA lysidine(34) synthetase TilS	A0A0N7G7K4	Chrysochromulina_ericina_virus	1.6e-12	27.2
WP_167845074.1\|291072_293139_+\|protease	ATP-dependent zinc metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	9.8e-109	46.8
WP_167845075.1\|293307_301377_+	ABC transporter permease	NA	NA	NA	NA
WP_167845076.1\|301376_302339_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.6e-27	33.3
WP_167845077.1\|302815_303043_+	hypothetical protein	NA	NA	NA	NA
WP_167845078.1\|303143_304481_+	HTH domain-containing protein	NA	NA	NA	NA
WP_167845079.1\|306524_306842_-	HIT family protein	NA	NA	NA	NA
WP_167845080.1\|306853_308059_-	hypothetical protein	NA	NA	NA	NA
WP_167845081.1\|308058_310182_-	hypothetical protein	NA	NA	NA	NA
WP_167845082.1\|310287_310830_+	hypothetical protein	NA	NA	NA	NA
WP_167845083.1\|311318_312005_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_167845084.1\|312017_312944_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.8e-06	26.7
WP_167845085.1\|312975_313860_+	hypothetical protein	NA	NA	NA	NA
WP_167845086.1\|314060_315437_-	leucyl aminopeptidase family protein	Q6GYZ8	Mycoplasma_phage	9.3e-140	70.9
WP_167845087.1\|315548_317015_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	3.0e-80	37.5
WP_167845067.1\|317680_318859_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.5e-16	34.6
WP_167845088.1\|319117_321946_+	AAA family ATPase	E3T5S4	Cafeteria_roenbergensis_virus	4.2e-62	29.1
WP_167845089.1\|321964_322198_-	hypothetical protein	NA	NA	NA	NA
WP_167845067.1\|322867_324046_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.5e-16	34.6
WP_167845090.1\|324091_325114_+	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	2.6e-14	27.6
WP_167845091.1\|325116_325905_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_167845092.1\|326221_327265_+	YwaF family protein	NA	NA	NA	NA
WP_167845093.1\|327385_328312_+	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_167845094.1\|328359_330294_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	8.6e-115	41.5
WP_167845019.1\|330580_332239_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_167845095.1\|332366_333674_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_167845096.1\|333666_334341_-	(d)CMP kinase	NA	NA	NA	NA
WP_167845097.1\|334383_334806_-	hypothetical protein	NA	NA	NA	NA
WP_167845098.1\|334977_337911_+	hypothetical protein	NA	NA	NA	NA
WP_167845099.1\|337963_339871_-	M13 family metallopeptidase	J3IZA7	Acanthamoeba_polyphaga_lentillevirus	2.7e-12	20.4
WP_167845100.1\|340017_341067_+	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	7.4e-12	29.3
WP_167845101.1\|341056_341287_+	hypothetical protein	NA	NA	NA	NA
WP_167845102.1\|341319_341901_+	hypothetical protein	NA	NA	NA	NA
WP_167845103.1\|342042_342633_+	hypothetical protein	NA	NA	NA	NA
WP_167845104.1\|342710_343190_+	hypothetical protein	NA	NA	NA	NA
WP_167845592.1\|343245_343797_-	NUDIX hydrolase	NA	NA	NA	NA
WP_167845105.1\|343846_344821_-	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	2.3e-36	31.0
WP_167845106.1\|345060_347445_+	phosphoketolase family protein	NA	NA	NA	NA
WP_167845593.1\|347619_347856_-	TM2 domain-containing protein	NA	NA	NA	NA
WP_167845107.1\|348035_348863_-	HAD family phosphatase	NA	NA	NA	NA
WP_167845108.1\|348931_349459_-	hypothetical protein	NA	NA	NA	NA
WP_167845109.1\|349502_350117_+	ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	3.2e-23	38.0
WP_167845110.1\|350163_350964_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	2.8e-19	31.8
WP_167845111.1\|350954_351941_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	5.7e-14	26.6
WP_167845112.1\|351940_352912_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_167845113.1\|354289_357217_-	AAA family ATPase	NA	NA	NA	NA
WP_167845114.1\|357229_357925_-	ribonuclease III	A0A0P0YNG1	Yellowstone_lake_phycodnavirus	4.9e-20	32.2
WP_167845115.1\|357917_358904_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_167845116.1\|358903_360532_-	DAK2 domain-containing protein	NA	NA	NA	NA
WP_167845117.1\|360524_360854_-	hypothetical protein	NA	NA	NA	NA
WP_167845118.1\|360961_361633_+	DNA repair protein RecO	NA	NA	NA	NA
WP_167845119.1\|366778_367096_-	hypothetical protein	NA	NA	NA	NA
WP_167845120.1\|367176_367935_+	hypothetical protein	NA	NA	NA	NA
WP_167845067.1\|368898_370077_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.5e-16	34.6

DBSCAN-SWA_2

567400 : 586481

Streptococcus_phage(94.12%)

integrase

attL 562616:562632|attR 593344:593360

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
562616:562632	attL	NA	NA	NA	NA
WP_167845249.1\|567400_568618_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	8.3e-233	99.8
WP_167845600.1\|568699_568903_-	excisionase	A0A1S5SF07	Streptococcus_phage	1.2e-30	98.5
WP_000857133.1\|569363_569594_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_167845250.1\|569551_570013_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.8e-72	99.3
WP_001227347.1\|570516_570870_+	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000336323.1\|570929_571097_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_167845601.1\|571215_573135_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	98.4
WP_001224320.1\|573510_574446_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	7.7e-170	99.0
WP_004026779.1\|574427_575444_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	6.6e-191	100.0
WP_004026774.1\|575425_577618_-	hypothetical protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000506270.1\|580049_580556_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|580530_581028_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|581144_581366_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_167845602.1\|581408_582614_-	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	1.1e-232	99.8
WP_000985015.1\|584206_584593_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000420682.1\|584608_584923_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_167845251.1\|585413_586481_+	NAD(P)-dependent alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.6e-14	26.8
593344:593360	attR	NA	NA	NA	NA

DBSCAN-SWA_3

591577 : 600998

Erysipelothrix_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167845255.1\|591577_593755_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.0e-43	27.9
WP_167845256.1\|594740_595946_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	5.6e-72	38.5
WP_167845257.1\|595956_596910_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.1e-25	39.8
WP_167845258.1\|596899_597568_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	2.2e-33	42.9
WP_167845259.1\|597567_599721_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.2e-13	32.4
WP_167845260.1\|599729_600998_+	serine hydroxymethyltransferase	A0A219YCZ0	Aeromonas_phage	5.7e-91	47.2

DBSCAN-SWA_4

611212 : 702486

unidentified_phage(28.57%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167845269.1\|611212_612901_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_167845270.1\|612908_613343_+	hypothetical protein	NA	NA	NA	NA
WP_167845271.1\|613374_614313_+	hypothetical protein	NA	NA	NA	NA
WP_167845272.1\|614312_615146_+\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	7.4e-07	25.2
WP_129620559.1\|615292_616297_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_167845273.1\|616457_616952_-	redoxin domain-containing protein	NA	NA	NA	NA
WP_167845274.1\|616951_617482_-	hypothetical protein	NA	NA	NA	NA
WP_167845275.1\|617484_618321_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_167845276.1\|619348_620884_+	MATE family efflux transporter	NA	NA	NA	NA
WP_167845277.1\|620931_628290_-	hypothetical protein	NA	NA	NA	NA
WP_167845278.1\|628369_629023_-	LemA family protein	NA	NA	NA	NA
WP_167845279.1\|629077_630154_-	hypothetical protein	NA	NA	NA	NA
WP_167845280.1\|630165_631476_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_167844891.1\|631524_631821_+	hypothetical protein	NA	NA	NA	NA
WP_167845281.1\|631986_633003_-	ZIP family metal transporter	NA	NA	NA	NA
WP_167845282.1\|633012_633759_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_167845283.1\|633787_634582_-	NAD(+) synthase	A0A0K0KVL1	Prochlorococcus_phage	2.9e-29	41.0
WP_129620572.1\|634719_635283_+	elongation factor P	NA	NA	NA	NA
WP_167845284.1\|635282_635594_+	hypothetical protein	NA	NA	NA	NA
WP_167845285.1\|635635_635983_+	hypothetical protein	NA	NA	NA	NA
WP_167845286.1\|636118_637135_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_167845287.1\|637135_637855_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_167845288.1\|637912_638401_-	hypothetical protein	NA	NA	NA	NA
WP_167845289.1\|638493_640488_-	hypothetical protein	NA	NA	NA	NA
WP_167845290.1\|642518_643490_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_167845291.1\|643489_644464_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_167845019.1\|644583_646242_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_167845292.1\|646734_647817_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_167845293.1\|647831_648692_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_167845294.1\|648784_650578_+	molecular chaperone DnaK	A0A167RF67	Powai_lake_megavirus	8.7e-130	44.2
WP_167845295.1\|650623_651487_-	hypothetical protein	NA	NA	NA	NA
WP_167845603.1\|651630_652770_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_167845296.1\|653006_653981_+	6-phosphofructokinase	NA	NA	NA	NA
WP_129620588.1\|654110_654344_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_167845297.1\|654345_656580_+	ribonuclease R	Q0GXV6	Lactococcus_phage	2.3e-71	36.0
WP_167845604.1\|656629_657328_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_167845298.1\|657338_658889_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.6e-74	32.9
WP_129620591.1\|658897_659182_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_167845299.1\|659594_663998_+	hypothetical protein	NA	NA	NA	NA
WP_167845586.1\|664259_665858_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_167845019.1\|665975_667634_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_167845300.1\|670358_679304_+	hypothetical protein	NA	NA	NA	NA
WP_167845301.1\|681982_683203_-	hypothetical protein	NA	NA	NA	NA
WP_167845302.1\|683353_685306_-	hypothetical protein	NA	NA	NA	NA
WP_167845303.1\|685543_690259_-	hypothetical protein	NA	NA	NA	NA
WP_167845304.1\|690248_690476_-	hypothetical protein	NA	NA	NA	NA
WP_167845305.1\|690654_690840_-	hypothetical protein	NA	NA	NA	NA
WP_167845306.1\|690839_693782_-	hypothetical protein	NA	NA	NA	NA
WP_167845307.1\|693794_694634_-	hypothetical protein	NA	NA	NA	NA
WP_167845308.1\|695152_695431_-	hypothetical protein	NA	NA	NA	NA
WP_167845309.1\|695453_696101_-	hypothetical protein	NA	NA	NA	NA
WP_167845310.1\|696069_696816_-	hypothetical protein	NA	NA	NA	NA
WP_167845311.1\|697083_697329_+	hypothetical protein	NA	NA	NA	NA
WP_167845312.1\|697500_698262_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	1.6e-16	34.6
WP_167845313.1\|699176_700631_-	hypothetical protein	NA	NA	NA	NA
WP_167845314.1\|700683_700905_-	hypothetical protein	NA	NA	NA	NA
WP_167845315.1\|701505_702486_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.1e-16	34.6

DBSCAN-SWA_5

974049 : 982875

Mycoplasma_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167845469.1\|974049_975309_-	DNA (cytosine-5-)-methyltransferase	M4HPD7	Bacillus_phage	1.2e-21	32.2
WP_167845470.1\|975646_976645_+	AAA family ATPase	I6S783	Marinomonas_phage	4.5e-19	28.2
WP_167845471.1\|976635_978315_+	hypothetical protein	O80243	Mycoplasma_phage	2.5e-142	47.1
WP_167845472.1\|978301_979495_+	hypothetical protein	O80244	Mycoplasma_phage	1.8e-38	35.2
WP_167845473.1\|979487_981347_+	hypothetical protein	NA	NA	NA	NA
WP_167845474.1\|981386_981899_+	hypothetical protein	O80246	Mycoplasma_phage	7.8e-07	37.3
WP_167845475.1\|981903_982875_+	hypothetical protein	O80247	Mycoplasma_phage	2.0e-32	31.0

DBSCAN-SWA_6

1052417 : 1058234

Streptococcus_phage(83.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000814511.1\|1052417_1052621_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_000857133.1\|1053081_1053312_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_167845506.1\|1053269_1053731_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	4.0e-71	98.6
WP_001227347.1\|1054235_1054589_+	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000336323.1\|1054648_1054816_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_167845507.1\|1057055_1058234_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.8e-15	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047225

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection