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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046173 Nocardia terpenica strain AUSMDU00012715 chromosome, complete genome 7 crisprs WYL,DinG,DEDDh,csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas4,RT,c2c9_V-U4,cas8c 0 6 6 0

Results visualization

1. NZ_CP046173
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046173_1 71313-71630 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046173_2 2626612-2626698 TypeI-E I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046173_3 2761988-2762095 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046173_4 3884818-3884949 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046173_5 5544571-5544673 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046173_6 7935459-7935678 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046173_7 8111312-8111399 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046173_1 1.6|71586|24|NZ_CP046173|CRT 71586-71609 24 NZ_CP015597 Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence 187636-187659 2 0.917
NZ_CP046173_1 1.2|71385|24|NZ_CP046173|CRT 71385-71408 24 NZ_LR134456 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence 69802-69825 3 0.875
NZ_CP046173_1 1.6|71586|24|NZ_CP046173|CRT 71586-71609 24 CP000385 Mycobacterium sp. MCS Plasmid1, complete sequence 187407-187430 3 0.875
NZ_CP046173_1 1.6|71586|24|NZ_CP046173|CRT 71586-71609 24 NC_008704 Mycobacterium sp. KMS plasmid pMKMS02, complete sequence 29597-29620 3 0.875
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 NZ_CP023740 Methylosinus trichosporium OB3b plasmid pOB3b3, complete sequence 1861-1890 5 0.833
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 MN234236 Mycobacterium phage QueenHazel, complete genome 29698-29727 5 0.833
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 NZ_CP030354 Novosphingobium sp. P6W plasmid pP6W1, complete sequence 19666-19695 6 0.8
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 AP018487 Mycobacterium phage HC DNA, complete genome 29705-29734 6 0.8
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 MN234195 Mycobacterium phage Xula, complete genome 29222-29251 6 0.8
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 NC_023697 Mycobacterium phage Babsiella, complete genome 30924-30953 6 0.8
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 291505-291534 6 0.8
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 NZ_CP021653 Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence 1888474-1888503 7 0.767
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 NZ_CP021767 Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence 1888516-1888545 7 0.767
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 NZ_CP012688 Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence 1888472-1888501 7 0.767
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 NZ_CP023549 Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence 455575-455604 7 0.767
NZ_CP046173_6 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder 7935487-7935521 35 NZ_AP022607 Mycobacterium branderi strain JCM 12687 plasmid pJCM12687 346279-346313 7 0.8
NZ_CP046173_2 2.1|2626638|35|NZ_CP046173|CRISPRCasFinder 2626638-2626672 35 NZ_CP020695 Sulfitobacter sp. D7 plasmid p1SUD7, complete sequence 14383-14417 8 0.771
NZ_CP046173_6 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder 7935487-7935521 35 NZ_CP012267 Cronobacter dublinensis subsp. dublinensis LMG 23823 plasmid pCDU1, complete sequence 72637-72671 8 0.771
NZ_CP046173_1 1.1|71334|30|NZ_CP046173|CRT 71334-71363 30 NZ_AP018440 Undibacterium sp. KW1 plasmid pUKW01, complete sequence 127061-127090 9 0.7
NZ_CP046173_6 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder 7935487-7935521 35 NZ_AP022607 Mycobacterium branderi strain JCM 12687 plasmid pJCM12687 346294-346328 9 0.743
NZ_CP046173_6 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder 7935487-7935521 35 NZ_CP018865 Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence 15430-15464 9 0.743
NZ_CP046173_6 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder 7935487-7935521 35 NZ_CP018865 Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence 242258-242292 9 0.743
NZ_CP046173_6 6.3|7935613|38|NZ_CP046173|CRISPRCasFinder 7935613-7935650 38 NZ_CP038636 Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence 840301-840338 10 0.737

1. spacer 1.6|71586|24|NZ_CP046173|CRT matches to NZ_CP015597 (Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence) position: , mismatch: 2, identity: 0.917

ggcgtagccctgctcgtaaccgcc	CRISPR spacer
ggcgtacccctgctcgtagccgcc	Protospacer
****** ***********.*****

2. spacer 1.2|71385|24|NZ_CP046173|CRT matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 3, identity: 0.875

gtagccctgctggccgtacccggg	CRISPR spacer
gtagccctgctggccgtagccctg	Protospacer
****************** **  *

3. spacer 1.6|71586|24|NZ_CP046173|CRT matches to CP000385 (Mycobacterium sp. MCS Plasmid1, complete sequence) position: , mismatch: 3, identity: 0.875

ggcgtagccctgctcgtaaccgcc	CRISPR spacer
cgcatagccctgctcgtatccgcc	Protospacer
 **.************** *****

4. spacer 1.6|71586|24|NZ_CP046173|CRT matches to NC_008704 (Mycobacterium sp. KMS plasmid pMKMS02, complete sequence) position: , mismatch: 3, identity: 0.875

ggcgtagccctgctcgtaaccgcc	CRISPR spacer
cgcatagccctgctcgtatccgcc	Protospacer
 **.************** *****

5. spacer 1.1|71334|30|NZ_CP046173|CRT matches to NZ_CP023740 (Methylosinus trichosporium OB3b plasmid pOB3b3, complete sequence) position: , mismatch: 5, identity: 0.833

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
ggcgccgcgatcctcggcgccgtcgccggc	Protospacer
*  **** *************** **** *

6. spacer 1.1|71334|30|NZ_CP046173|CRT matches to MN234236 (Mycobacterium phage QueenHazel, complete genome) position: , mismatch: 5, identity: 0.833

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
gtcgccgggatcctcggcgccggactcgtc	Protospacer
** ******************* * .**.*

7. spacer 1.1|71334|30|NZ_CP046173|CRT matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 6, identity: 0.8

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
gaaatcggtatcctcggcgccgtagccggt	Protospacer
* *..*** ******************* .

8. spacer 1.1|71334|30|NZ_CP046173|CRT matches to AP018487 (Mycobacterium phage HC DNA, complete genome) position: , mismatch: 6, identity: 0.8

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
gtcgccgggatcctcggcgccggcctcgtc	Protospacer
** *******************   .**.*

9. spacer 1.1|71334|30|NZ_CP046173|CRT matches to MN234195 (Mycobacterium phage Xula, complete genome) position: , mismatch: 6, identity: 0.8

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
gtcgccgggatcctcggcgccggcctcgtc	Protospacer
** *******************   .**.*

10. spacer 1.1|71334|30|NZ_CP046173|CRT matches to NC_023697 (Mycobacterium phage Babsiella, complete genome) position: , mismatch: 6, identity: 0.8

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
gtcgccgggatcctcggcgccggcctcgtc	Protospacer
** *******************   .**.*

11. spacer 1.1|71334|30|NZ_CP046173|CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 6, identity: 0.8

gtagc-cgggatcctcggcgccgtagccgcc	CRISPR spacer
-caccacgggatcctcggcgccgccgccggc	Protospacer
 .* * *****************. **** *

12. spacer 1.1|71334|30|NZ_CP046173|CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
gcggtcggtatcctcggcgtcgtagccgaa	Protospacer
*..*.*** **********.********  

13. spacer 1.1|71334|30|NZ_CP046173|CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
gcggtcggtatcctcggcgtcgtagccgaa	Protospacer
*..*.*** **********.********  

14. spacer 1.1|71334|30|NZ_CP046173|CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
gcggtcggtatcctcggcgtcgtagccgaa	Protospacer
*..*.*** **********.********  

15. spacer 1.1|71334|30|NZ_CP046173|CRT matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
gacgggtggatcgtcggcgccgtagccgac	Protospacer
*  *   ***** *************** *

16. spacer 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 7, identity: 0.8

tgctgggcctgctggccgtagggctgctgcccgta	CRISPR spacer
cccgggtgctgctggccgtaaggctgctggccgta	Protospacer
. * **  ************.******** *****

17. spacer 2.1|2626638|35|NZ_CP046173|CRISPRCasFinder matches to NZ_CP020695 (Sulfitobacter sp. D7 plasmid p1SUD7, complete sequence) position: , mismatch: 8, identity: 0.771

cccgctgctcgacaatgccgggcaaccacgtcgga-	CRISPR spacer
ccggctgctcgacgatgccgggcaa-gaggccgatc	Protospacer
** **********.***********  * *.**.  

18. spacer 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder matches to NZ_CP012267 (Cronobacter dublinensis subsp. dublinensis LMG 23823 plasmid pCDU1, complete sequence) position: , mismatch: 8, identity: 0.771

tgctgggcctgctggccgtagggctgctgcccgta	CRISPR spacer
gactcggtctgctggccgtagggctgctggcgctg	Protospacer
 .** **.********************* *  *.

19. spacer 1.1|71334|30|NZ_CP046173|CRT matches to NZ_AP018440 (Undibacterium sp. KW1 plasmid pUKW01, complete sequence) position: , mismatch: 9, identity: 0.7

gtagccgggatcctcggcgccgtagccgcc	CRISPR spacer
taagccgggatactcggcgacgtagaactt	Protospacer
  ********* ******* *****   ..

20. spacer 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 9, identity: 0.743

tgctgggcctgctggccgtagggctgctgcccgta	CRISPR spacer
ccgtaaggctgctggccgtagggctgctgaccgcc	Protospacer
.  *..* ********************* ***. 

21. spacer 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 9, identity: 0.743

tgctgggcctgctggccgtagggctgctgcccgta	CRISPR spacer
ttcagttcctgctgaccgtggggctgctgccctgc	Protospacer
* * *  *******.****.************   

22. spacer 6.1|7935487|35|NZ_CP046173|CRISPRCasFinder matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 9, identity: 0.743

tgctgggcctgctggccgtagggctgctgcccgta	CRISPR spacer
ttcagttcctgctgaccgtggggctgctgccctgc	Protospacer
* * *  *******.****.************   

23. spacer 6.3|7935613|38|NZ_CP046173|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.737

ccgtaggacgcctgctggccgggctgcgccgcctggcc	CRISPR spacer
acccggagcgcctgctggccgcgctgcggcgcctgcgc	Protospacer
 * ..*..************* ****** ******  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2178734 : 2248102 74 Mycobacterium_phage(17.24%) capsid,tRNA,terminase,coat,protease,integrase attL 2213992:2214007|attR 2237255:2237270
DBSCAN-SWA_2 5754723 : 5790121 42 Mycobacterium_phage(26.92%) portal,capsid,tail NA
DBSCAN-SWA_3 8565202 : 8591985 24 Staphylococcus_phage(16.67%) transposase,integrase,tRNA attL 8585562:8585621|attR 8590946:8591031
DBSCAN-SWA_4 8643661 : 8685956 25 Gordonia_phage(28.57%) transposase,integrase attL 8670947:8670963|attR 8685031:8685047
DBSCAN-SWA_5 8699680 : 8843567 106 Gordonia_phage(21.05%) transposase,integrase attL 8729066:8729125|attR 8841910:8843274
DBSCAN-SWA_6 8862128 : 9017704 114 Bacillus_phage(20.0%) tRNA,transposase,integrase,tail attL 8919974:8919991|attR 8973778:8973795
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage