CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045514	Salmonella enterica subsp. enterica serovar Anatum strain Sal-3948 plasmid p77k, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP045513	Salmonella enterica subsp. enterica serovar Anatum strain Sal-3948 chromosome Sal-3948, complete sequence	2 crisprs	DinG,WYL,DEDDh,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	0	6	10	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5474 : 52874

Escherichia_phage(39.13%)

integrase,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067858.1\|5474_6179_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000084744.1\|6513_6906_+	NimC/NimA family protein	NA	NA	NA	NA
WP_063102497.1\|7225_7612_-	bleomycin binding protein	NA	NA	NA	NA
WP_063073416.1\|7743_10710_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
WP_021532377.1\|10712_11273_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_001067855.1\|11429_12134_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000027057.1\|12436_13297_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|13395_14100_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001300294.1\|15489_16158_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|16193_16430_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277456.1\|16426_16789_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000105636.1\|16806_18501_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001067855.1\|18689_19394_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|19583_20399_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_128111736.1\|20464_21169_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	2.6e-138	99.1
WP_000550473.1\|22121_22271_-	hypothetical protein	NA	NA	NA	NA
WP_000534857.1\|22615_22855_+	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	2.0e-18	54.4
WP_000323025.1\|22854_23142_+	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_001531258.1\|23445_24228_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	6.1e-136	96.5
WP_000627495.1\|24224_25247_-\|transposase	IS21-like element ISSen3 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-174	85.3
WP_001162839.1\|26046_28254_+	AAA domain-containing protein	NA	NA	NA	NA
WP_000449742.1\|28256_30839_+	hypothetical protein	NA	NA	NA	NA
WP_085950818.1\|31259_32380_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_004193081.1\|32392_32761_+	hypothetical protein	NA	NA	NA	NA
WP_000600827.1\|32808_33786_-\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	1.1e-06	34.9
WP_032435955.1\|34377_34512_-	hypothetical protein	NA	NA	NA	NA
WP_001351729.1\|36612_37005_+	cysteine hydrolase	NA	NA	NA	NA
WP_001067855.1\|37427_38132_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001381192.1\|38622_39615_+	AAA family ATPase	NA	NA	NA	NA
WP_000376623.1\|39583_40084_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|40211_41051_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|41044_41392_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206356.1\|41555_42347_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_071523897.1\|42352_42598_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|42754_43252_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845054.1\|43396_44410_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_001162012.1\|44715_45273_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_001138073.1\|45275_48248_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_000844627.1\|49318_49561_+\|transposase	transposase	NA	NA	NA	NA
WP_000164043.1\|49592_50243_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000804064.1\|50348_51548_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_001067855.1\|52169_52874_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP045513

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045513_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045513_1

3084802-3085562

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

12 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP045513_1

>merge|NZ_CP045513|1|3084802-3085562|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAACTGAAACCAGGCCAGGTGATATTTATCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCATACCCTGTAGTTTCAATTTCCGCAGGTGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGCGGAATGATTTTTAACGCTGAGATGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGTACCGCGACACCGTCAACGACAGCAACCACTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTCACTAAAATTTGTAGGGTTATCCACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCAATTGCAGTTTGACGCGGTGCTGTCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCTTAACTCCATTGCTGAGTCGATTGTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACACAGAACGCCAGTTATAATCATCGGTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGTTTGTGGCGTCAGTAATACTATTATCGGTGTGTTCCCCGCGCTAGCGGGGATAAACCGTTTTTAAATCCGGACAGACCCTGTAACGGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCGACTGTATGCCCAGCAGAACGAGGGCGCGTGTTCCCCGCGCTAGCGGGGATAAACCGCACGAGTGGCAAATTGATTTCGACGAAAAACCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP045513|1|1|3084802-3085501|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGAAACCAGGCCAGGTGATATTTATCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCCTGTAGTTTCAATTTCCGCAGGTGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGGAATGATTTTTAACGCTGAGATGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG

>NZ_CP045513|1|1|3084802-3085562|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGAAACCAGGCCAGGTGATATTTATCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCCTGTAGTTTCAATTTCCGCAGGTGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGGAATGATTTTTAACGCTGAGATGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP045513|1|1|3084802-3085562|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGAAACCAGGCCAGGTGATATTTATCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATACCCTGTAGTTTCAATTTCCGCAGGTGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGGAATGATTTTTAACGCTGAGATGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045513.1\|WP_000210863.1\|3080679_3082317_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP045513.1\|WP_023243192.1\|3098076_3099135_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP045513.1\|WP_000480218.1\|3078268_3078625_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP045513.1\|WP_000036734.1\|3082399_3083698_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP045513.1\|WP_165882434.1\|3071789_3074546_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP045513.1\|WP_023244652.1\|3087343_3089143_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP045513.1\|WP_165882437.1\|3095949_3097506_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP045513.1\|WP_001290660.1\|3089142_3090855_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP045513.1\|WP_023243200.1\|3074603_3075899_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP045513.1\|WP_001208002.1\|3085659_3086457_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP045513.1\|WP_000226842.1\|3075950_3078185_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP045513.1\|WP_023244651.1\|3091877_3092831_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP045513.1\|WP_000859612.1\|3078590_3078887_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP045513.1\|WP_000117946.1\|3097502_3098063_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP045513.1\|WP_023243194.1\|3093274_3095938_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP045513.1\|WP_000108313.1\|3086546_3086909_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP045513.1\|WP_023243195.1\|3090930_3091665_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP045513.1\|WP_001199961.1\|3083833_3084505_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP045513.1\|WP_000210454.1\|3079651_3080452_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP045513.1\|WP_000706479.1\|3070603_3071746_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840

Protein	Function_ID	Function_description	E-value
NZ_CP045513.1\|WP_000210863.1\|3080679_3082317_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP045513.1\|WP_023243192.1\|3098076_3099135_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.6231e-131
NZ_CP045513.1\|WP_000480218.1\|3078268_3078625_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP045513.1\|WP_000036734.1\|3082399_3083698_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP045513.1\|WP_165882434.1\|3071789_3074546_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP045513.1\|WP_023244652.1\|3087343_3089143_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP045513.1\|WP_165882437.1\|3095949_3097506_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP045513.1\|WP_001290660.1\|3089142_3090855_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP045513.1\|WP_023243200.1\|3074603_3075899_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP045513.1\|WP_001208002.1\|3085659_3086457_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP045513.1\|WP_000226842.1\|3075950_3078185_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP045513.1\|WP_023244651.1\|3091877_3092831_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP045513.1\|WP_000859612.1\|3078590_3078887_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.09008e-13
NZ_CP045513.1\|WP_000117946.1\|3097502_3098063_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP045513.1\|WP_023243194.1\|3093274_3095938_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP045513.1\|WP_000108313.1\|3086546_3086909_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP045513.1\|WP_023243195.1\|3090930_3091665_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.18614e-138
NZ_CP045513.1\|WP_001199961.1\|3083833_3084505_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP045513.1\|WP_000210454.1\|3079651_3080452_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
NZ_CP045513.1\|WP_000706479.1\|3070603_3071746_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0

>NZ_CP045513.1|WP_001199961.1|3083833_3084505_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP045513.1|WP_000036734.1|3082399_3083698_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP045513.1|WP_000210863.1|3080679_3082317_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP045513.1|WP_000210454.1|3079651_3080452_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP045513.1|WP_000859612.1|3078590_3078887_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKTVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP045513.1|WP_000480218.1|3078268_3078625_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP045513.1|WP_000226842.1|3075950_3078185_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP045513.1|WP_023243200.1|3074603_3075899_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLECFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP045513.1|WP_165882434.1|3071789_3074546_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP045513.1|WP_000706479.1|3070603_3071746_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP045513.1|WP_001208002.1|3085659_3086457_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP045513.1|WP_000108313.1|3086546_3086909_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP045513.1|WP_023244652.1|3087343_3089143_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMSGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP045513.1|WP_001290660.1|3089142_3090855_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP045513.1|WP_023243195.1|3090930_3091665_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDEITDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP045513.1|WP_023244651.1|3091877_3092831_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP045513.1|WP_023243194.1|3093274_3095938_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMCNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP045513.1|WP_165882437.1|3095949_3097506_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVMDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGGCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIQDLENGHKPDERLNKWQRELWMFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP045513.1|WP_000117946.1|3097502_3098063_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP045513.1|WP_023243192.1|3098076_3099135_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNAAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA

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Crispr_ID: NZ_CP045513_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045513_2

3101876-3102392

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCTAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCNAGCGGGGATAAACCG	CRT

8 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP045513_2

>merge|NZ_CP045513|2|3101876-3102392|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCGGACCACGACTGGAGTGATCAGATCGGTGTGGTGTGTTCCCCGCGCTAGCGGGGATAAACCGCGAGCGGTACAACTCCAGCATTAATCCCCACCGTGTTCCCCGCGCTAGCGGGGATAAACCGCGGCGAATCAGTACGAGGGACGGCTGGCGCTGGTGTTCCCCGCGCTAGCGGGGATAAACCGCGGTTCCGTCATTGCAGATCCCCCACTTCATCGTGTTCCCCGCGCTAGCGGGGATAAACCGGACGCGTCTTTTCCACAGCAGGACTCTAAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGCCAGAGGAATGGCTTTCAGTGTTTTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCGGCTAAACGATGAATTAACCAGGGAGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCACAACGCCTGGATATCCGCCCATCGGCCGTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP045513|2|2|3101876-3102331|PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACCACGACTGGAGTGATCAGATCGGTGTGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGAGCGGTACAACTCCAGCATTAATCCCCACC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGCGAATCAGTACGAGGGACGGCTGGCGCTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGTTCCGTCATTGCAGATCCCCCACTTCATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACGCGTCTTTTCCACAGCAGGACTCTAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGGCTAAACGATGAATTAACCAGGGAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP045513|2|2|3101876-3102392|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACCACGACTGGAGTGATCAGATCGGTGTGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGAGCGGTACAACTCCAGCATTAATCCCCACC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGCGAATCAGTACGAGGGACGGCTGGCGCTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGTTCCGTCATTGCAGATCCCCCACTTCATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACGCGTCTTTTCCACAGCAGGACTCTAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGGCTAAACGATGAATTAACCAGGGAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP045513|2|2|3101876-3102392|CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACCACGACTGGAGTGATCAGATCGGTGTGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGAGCGGTACAACTCCAGCATTAATCCCCACC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGCGAATCAGTACGAGGGACGGCTGGCGCTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGTTCCGTCATTGCAGATCCCCCACTTCATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACGCGTCTTTTCCACAGCAGGACTCTAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGGCTAAACGATGAATTAACCAGGGAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045513.1\|WP_001221538.1\|3109763_3110525_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP045513.1\|WP_023244650.1\|3100520_3101486_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP045513.1\|WP_000085115.1\|3099145_3099892_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP045513.1\|WP_001118109.1\|3106670_3107027_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP045513.1\|WP_000281483.1\|3099873_3100524_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP045513.1\|WP_000517480.1\|3107217_3107529_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP045513.1\|WP_001173664.1\|3106047_3106653_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP045513.1\|WP_001518648.1\|3101485_3101779_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP045513.1\|WP_000741650.1\|3107547_3108258_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP045513.1\|WP_000134246.1\|3108733_3109783_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP045513.1\|WP_023244651.1\|3091877_3092831_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP045513.1\|WP_165882437.1\|3095949_3097506_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP045513.1\|WP_000372384.1\|3103703_3104612_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP045513.1\|WP_001219245.1\|3108257_3108737_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP045513.1\|WP_000117946.1\|3097502_3098063_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP045513.1\|WP_023243194.1\|3093274_3095938_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP045513.1\|WP_023243192.1\|3098076_3099135_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP045513.1\|WP_000490481.1\|3102406_3103453_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP045513.1\|WP_001092255.1\|3104621_3106061_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP045513.1\|WP_023243195.1\|3090930_3091665_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
NZ_CP045513.1\|WP_001221538.1\|3109763_3110525_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP045513.1\|WP_023244650.1\|3100520_3101486_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.61403e-153
NZ_CP045513.1\|WP_000085115.1\|3099145_3099892_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
NZ_CP045513.1\|WP_001118109.1\|3106670_3107027_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP045513.1\|WP_000281483.1\|3099873_3100524_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
NZ_CP045513.1\|WP_000517480.1\|3107217_3107529_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP045513.1\|WP_001173664.1\|3106047_3106653_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.11365e-145
NZ_CP045513.1\|WP_001518648.1\|3101485_3101779_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP045513.1\|WP_000741650.1\|3107547_3108258_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP045513.1\|WP_000134246.1\|3108733_3109783_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP045513.1\|WP_023244651.1\|3091877_3092831_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP045513.1\|WP_165882437.1\|3095949_3097506_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP045513.1\|WP_000372384.1\|3103703_3104612_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP045513.1\|WP_001219245.1\|3108257_3108737_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP045513.1\|WP_000117946.1\|3097502_3098063_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP045513.1\|WP_023243194.1\|3093274_3095938_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP045513.1\|WP_023243192.1\|3098076_3099135_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.6231e-131
NZ_CP045513.1\|WP_000490481.1\|3102406_3103453_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP045513.1\|WP_001092255.1\|3104621_3106061_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP045513.1\|WP_023243195.1\|3090930_3091665_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.18614e-138

>NZ_CP045513.1|WP_001518648.1|3101485_3101779_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP045513.1|WP_023244650.1|3100520_3101486_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP045513.1|WP_000281483.1|3099873_3100524_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP045513.1|WP_000085115.1|3099145_3099892_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP045513.1|WP_023243192.1|3098076_3099135_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNAAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP045513.1|WP_000117946.1|3097502_3098063_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP045513.1|WP_165882437.1|3095949_3097506_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVMDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGGCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIQDLENGHKPDERLNKWQRELWMFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP045513.1|WP_023243194.1|3093274_3095938_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMCNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP045513.1|WP_023244651.1|3091877_3092831_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP045513.1|WP_023243195.1|3090930_3091665_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDEITDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP045513.1|WP_000490481.1|3102406_3103453_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP045513.1|WP_000372384.1|3103703_3104612_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP045513.1|WP_001092255.1|3104621_3106061_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPMEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP045513.1|WP_001173664.1|3106047_3106653_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARSGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP045513.1|WP_001118109.1|3106670_3107027_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP045513.1|WP_000517480.1|3107217_3107529_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP045513.1|WP_000741650.1|3107547_3108258_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP045513.1|WP_001219245.1|3108257_3108737_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP045513.1|WP_000134246.1|3108733_3109783_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP045513.1|WP_001221538.1|3109763_3110525_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	27359-27390	0	1.0
NZ_CP045513_2	2.8\|3102332\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3102332-3102363	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35345-35376	0	1.0
NZ_CP045513_2	2.8\|3102332\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3102332-3102363	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95164-95195	1	0.969
NZ_CP045513_2	2.8\|3102332\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3102332-3102363	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9403-9434	1	0.969
NZ_CP045513_2	2.8\|3102332\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3102332-3102363	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39768	1	0.969
NZ_CP045513_2	2.8\|3102332\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3102332-3102363	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113376-113407	1	0.969
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	CP054337	Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence	47898-47929	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	30480-30511	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	8985-9016	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	71040-71071	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP023732	Escherichia coli strain FORC 064 plasmid pFORC64.1, complete sequence	48005-48036	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	116267-116298	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	27391-27422	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	71244-71275	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP041922	Escherichia coli strain Ec40743 plasmid unnamed3, complete sequence	64019-64050	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	33729-33760	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	64871-64902	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	54320-54351	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NC_050152	Enterobacteria phage P7, complete genome	86888-86919	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NC_042128	Escherichia phage RCS47, complete genome	91937-91968	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NC_031129	Salmonella phage SJ46, complete genome	84791-84822	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5645-5676	3	0.906
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP042632	Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-5, complete sequence	40633-40664	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP042620	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence	54231-54262	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_AP018804	Escherichia coli strain E2863 plasmid pE2863-2, complete sequence	19433-19464	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP021720	Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence	110385-110416	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP021537	Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence	23452-23483	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP027309	Escherichia coli strain 2015C-3108 plasmid unnamed2, complete sequence	32859-32890	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	CP050999	Escherichia coli O39:NM str. F8704-2 plasmid pF8704-2_2	40868-40899	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP047663	Escherichia coli strain LD93-1 plasmid pLD93-1-90kb, complete sequence	62453-62484	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP029365	Escherichia coli strain WCHEC035148 plasmid p1_035148, complete sequence	65901-65932	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	NZ_CP020051	Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence	61123-61154	4	0.875
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	KY271396	Klebsiella phage 2 LV-2017, complete genome	41444-41475	4	0.875
NZ_CP045513_1	1.4\|3085014\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3085014-3085045	32	NZ_CP018865	Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence	205587-205618	6	0.812
NZ_CP045513_1	1.7\|3085197\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3085197-3085228	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1236642-1236673	6	0.812
NZ_CP045513_1	1.7\|3085197\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3085197-3085228	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1370300-1370331	6	0.812
NZ_CP045513_1	1.3\|3084953\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3084953-3084984	32	MK575466	Vibrio phage Rostov 7, complete genome	14119-14150	7	0.781
NZ_CP045513_2	2.8\|3102332\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3102332-3102363	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	270963-270994	7	0.781
NZ_CP045513_1	1.4\|3085014\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3085014-3085045	32	NZ_CP015738	Shinella sp. HZN7 plasmid pShin-02, complete sequence	176307-176338	8	0.75
NZ_CP045513_1	1.4\|3085014\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3085014-3085045	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	332281-332312	8	0.75
NZ_CP045513_1	1.10\|3085380\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3085380-3085411	32	NZ_CP025224	Enterococcus sp. CR-Ec1 plasmid pCREc1, complete sequence	62016-62047	8	0.75
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1655546-1655577	8	0.75
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1565948-1565979	8	0.75
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1565949-1565980	8	0.75
NZ_CP045513_1	1.4\|3085014\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3085014-3085045	32	AP018399	Xanthomonas phage XacN1 DNA, complete genome	89668-89699	9	0.719
NZ_CP045513_1	1.4\|3085014\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3085014-3085045	32	NC_030917	Gordonia phage OneUp, complete genome	3597-3628	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1578348-1578379	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1496565-1496596	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1568471-1568502	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1495587-1495618	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1496557-1496588	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1495910-1495941	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1496547-1496578	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1578515-1578546	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1578498-1578529	9	0.719
NZ_CP045513_1	1.12\|3085502\|32\|NZ_CP045513\|CRISPRCasFinder,CRT	3085502-3085533	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1578478-1578509	9	0.719
NZ_CP045513_1	1.4\|3085014\|32\|NZ_CP045513\|PILER-CR,CRISPRCasFinder,CRT	3085014-3085045	32	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	161882-161913	10	0.688

1. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggaatgatttttaacgctgagatggtg	Protospacer
********************************

2. spacer 2.8|3102332|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

3. spacer 2.8|3102332|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

4. spacer 2.8|3102332|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

5. spacer 2.8|3102332|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

6. spacer 2.8|3102332|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

7. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

8. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

9. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

10. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

11. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023732 (Escherichia coli strain FORC 064 plasmid pFORC64.1, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

12. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

13. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

14. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

15. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041922 (Escherichia coli strain Ec40743 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

16. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

17. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

18. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

19. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

20. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NC_042128 (Escherichia phage RCS47, complete genome) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

21. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
agcgcggcatgatttttaacgatgagatggtc	Protospacer
******* ************* *********

22. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 3, identity: 0.906

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcggaatgatttttaacgccgatatggtg	Protospacer
*.********************.** ******

23. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042632 (Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-5, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

24. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042620 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

25. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018804 (Escherichia coli strain E2863 plasmid pE2863-2, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

26. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021720 (Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

27. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

28. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027309 (Escherichia coli strain 2015C-3108 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

29. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to CP050999 (Escherichia coli O39:NM str. F8704-2 plasmid pF8704-2_2) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

30. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047663 (Escherichia coli strain LD93-1 plasmid pLD93-1-90kb, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

31. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029365 (Escherichia coli strain WCHEC035148 plasmid p1_035148, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

32. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020051 (Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacgcgggatgatttttaacgatgagatggtc	Protospacer
*.*****.************* *********

33. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to KY271396 (Klebsiella phage 2 LV-2017, complete genome) position: , mismatch: 4, identity: 0.875

agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
aacacggaatgatttttaacggggagatggtg	Protospacer
*.*.*****************  *********

34. spacer 1.4|3085014|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 6, identity: 0.812

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
aaccgcgtcaccggcaacgacagcaaccggct	Protospacer
 ****** ***** **************. .*

35. spacer 1.7|3085197|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcttaactccattgctgagtcga-ttgtgaa	CRISPR spacer
tgctttaactccatttttgagtcgatttgtgc-	Protospacer
**..*********** .******** *****

36. spacer 1.7|3085197|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcttaactccattgctgagtcga-ttgtgaa	CRISPR spacer
tgctttaactccatttttgagtcgatttgtgc-	Protospacer
**..*********** .******** *****

37. spacer 1.3|3084953|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 7, identity: 0.781

-agcgcggaatgatttttaacgctgagatggtg	CRISPR spacer
tagttc-caatgatttttaacactgacatggtt	Protospacer
 **. *  *************.**** *****

38. spacer 2.8|3102332|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** *

39. spacer 1.4|3085014|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 8, identity: 0.75

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
cgccgcgacaccgtcaacgacatcatcctgcc	Protospacer
..******************** ** **  ..

40. spacer 1.4|3085014|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

taccgcgacaccgtcaacgacagcaaccactt--	CRISPR spacer
gacagcgacaccgtcatcgacagca--cggtgaa	Protospacer
 ** ************ ********  *. *

41. spacer 1.10|3085380|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025224 (Enterococcus sp. CR-Ec1 plasmid pCREc1, complete sequence) position: , mismatch: 8, identity: 0.75

tttttaaatccggacagaccctgtaacggatc	CRISPR spacer
tttttaaatccggaaagacactgtcaaaaaag	Protospacer
************** **** **** * ..*

42. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

43. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

44. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

45. spacer 1.4|3085014|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
acttgcgacaccgacaccgacagcaacccgta	Protospacer
  ..********* ** ***********  *

46. spacer 1.4|3085014|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NC_030917 (Gordonia phage OneUp, complete genome) position: , mismatch: 9, identity: 0.719

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
gtgagctacaccgtcaacgacatcaacgagta	Protospacer
    ** *************** **** * *

47. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

48. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

49. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

50. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

51. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

52. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

53. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

54. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

55. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

56. spacer 1.12|3085502|32|NZ_CP045513|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

57. spacer 1.4|3085014|32|NZ_CP045513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 10, identity: 0.688

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
agccgcgccaccggcaacgacagcacgaagac	Protospacer
 .***** ***** ***********   *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4370 : 83811

100

Salmonella_phage(56.36%)

tail,head,capsid,protease,holin,integrase,plate,portal,terminase,tRNA

attL 25008:25024|attR 83330:83346

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023893413.1\|4370_4889_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_000272239.1\|4885_4993_-	hypothetical protein	NA	NA	NA	NA
WP_000460698.1\|5198_5645_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_000579793.1\|5624_6419_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000205341.1\|6519_7704_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_001222527.1\|7822_8170_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_000487135.1\|8155_8467_-	hypothetical protein	NA	NA	NA	NA
WP_000673492.1\|8535_8787_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001589065.1\|8982_9081_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_000512149.1\|9219_9468_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_001532438.1\|9781_10423_-	hypothetical protein	NA	NA	NA	NA
WP_000513733.1\|10652_10835_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_001248993.1\|10837_11200_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000457190.1\|11372_12011_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_000617985.1\|12206_12752_-	chorismate mutase	NA	NA	NA	NA
WP_000908466.1\|12834_12990_+	hypothetical protein	NA	NA	NA	NA
WP_000208086.1\|13068_13317_+	hypothetical protein	NA	NA	NA	NA
WP_000190263.1\|13571_14420_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001682351.1\|14488_15082_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000175797.1\|15226_16015_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
WP_001537483.1\|16122_16770_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_001183699.1\|16966_17293_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_001618317.1\|17486_18620_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_000947459.1\|18701_19292_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_000950212.1\|19285_20083_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_000966637.1\|20076_20889_-	ABC transporter permease	NA	NA	NA	NA
WP_001748353.1\|20878_21853_-	ABC transporter permease	NA	NA	NA	NA
WP_000946091.1\|21852_23487_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000182479.1\|24168_24483_+	hypothetical protein	NA	NA	NA	NA
WP_000929973.1\|24631_25162_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
25008:25024	attL	NA	NA	NA	NA
WP_021000256.1\|25244_26288_-	exo-alpha-sialidase	NA	NA	NA	NA
WP_001218120.1\|26626_27094_-	Hsp20 family protein	NA	NA	NA	NA
WP_000927827.1\|27246_27519_-	hypothetical protein	NA	NA	NA	NA
WP_000758947.1\|27718_27844_-	lipoprotein	NA	NA	NA	NA
WP_080155368.1\|28221_28566_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_000789471.1\|29787_30345_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	1.0e-15	33.0
WP_001535993.1\|31156_31420_+	virulence protein PagD	NA	NA	NA	NA
WP_001537306.1\|31551_31764_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_001520581.1\|32178_32700_+	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_000497451.1\|32890_33130_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_001033398.1\|33619_34408_+	hypothetical protein	NA	NA	NA	NA
WP_021000253.1\|35403_36528_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_012218897.1\|36975_37188_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
WP_000334550.1\|37441_38113_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-80	61.3
WP_023171144.1\|38105_39374_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	7.3e-240	96.0
WP_023171145.1\|39376_39796_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.8e-36	59.1
WP_077909836.1\|40132_40345_-	hypothetical protein	A0A1B0V844	Salmonella_phage	9.3e-07	62.9
WP_023171148.1\|40469_41603_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	1.6e-36	33.0
WP_023171149.1\|41640_41853_-	hypothetical protein	F1BUK1	Cronobacter_phage	1.6e-11	60.9
WP_095470790.1\|41842_42448_-\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	8.9e-103	96.8
WP_095470789.1\|42417_43671_-\|tail	phage tail protein	A0A1S6KZZ0	Salmonella_phage	1.4e-174	94.0
WP_001207833.1\|43657_44245_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	8.3e-114	99.5
WP_000785578.1\|44247_45327_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.9e-205	100.0
WP_000605051.1\|45319_45733_-	hypothetical protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
WP_001273648.1\|45737_46271_-\|plate	phage baseplate assembly protein	A0A192Y8K5	Salmonella_phage	8.4e-97	100.0
WP_001066630.1\|46270_47329_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	1.3e-202	100.0
WP_000863827.1\|47325_48666_-	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.2e-252	100.0
WP_165882362.1\|48699_50628_-\|tail	phage tail tape measure protein	A0A192Y6D8	Salmonella_phage	0.0e+00	99.7
WP_000588852.1\|50712_51039_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000515952.1\|51035_51392_-\|tail	tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_001007994.1\|51391_52888_-\|tail	tail sheath protein	Q8HAC5	Salmonella_phage	3.0e-277	99.4
WP_000497755.1\|52877_53042_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	8.4e-24	96.3
WP_001241332.1\|53063_53609_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	3.6e-87	84.7
WP_023171043.1\|53605_54118_-	hypothetical protein	Q8HAC8	Salmonella_phage	6.2e-81	87.1
WP_023171044.1\|54089_54503_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	6.0e-50	74.8
WP_000886224.1\|54514_54838_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	2.2e-31	57.4
WP_023171046.1\|55177_56395_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.6e-199	88.9
WP_023171047.1\|56404_57253_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	7.5e-132	88.2
WP_023171048.1\|57266_58571_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.9e-219	86.6
WP_077909829.1\|58570_60313_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	5.3e-140	44.5
WP_023171050.1\|60266_60731_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.7e-48	62.1
WP_024147208.1\|60863_61208_-	HNH endonuclease	K7P7P6	Enterobacteria_phage	8.8e-47	73.9
WP_001070544.1\|61342_61570_-	hypothetical protein	NA	NA	NA	NA
WP_000495545.1\|61666_62044_-	hypothetical protein	Q6UAR9	Klebsiella_phage	2.2e-43	68.5
WP_023171052.1\|62086_62626_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.3e-07	49.3
WP_023171053.1\|62622_63237_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.4e-108	93.1
WP_000250465.1\|63236_63518_-\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	8.2e-19	51.1
WP_023171055.1\|63504_63891_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	8.9e-56	92.2
WP_023171056.1\|64041_64965_+	hypothetical protein	A0A1B5FPA3	Escherichia_phage	1.6e-42	56.4
WP_023171057.1\|65071_65902_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	5.0e-56	43.3
WP_024147207.1\|65932_66922_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	1.5e-192	98.8
WP_023171059.1\|66929_67790_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.7e-161	98.6
WP_023171060.1\|67806_68196_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	7.1e-69	97.7
WP_023171061.1\|68192_69086_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	8.7e-163	93.9
WP_023171062.1\|69085_69568_-	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.6e-86	98.8
WP_024160494.1\|69569_70544_-	GntR family transcriptional regulator	U5P0A0	Shigella_phage	6.0e-117	79.6
WP_080155401.1\|70761_71904_-	peptidase	A0A1C9IHV9	Salmonella_phage	3.7e-182	87.6
WP_000509731.1\|71900_72455_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_001191666.1\|72483_72708_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_001020640.1\|72805_73501_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	4.6e-127	99.6
WP_000997190.1\|74315_74687_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
WP_000008351.1\|75707_76247_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_023171066.1\|77048_77522_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	2.1e-67	78.8
WP_000089141.1\|78282_78519_+	excisionase	NA	NA	NA	NA
WP_000741321.1\|78508_79651_+\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	1.4e-173	80.0
WP_000444509.1\|79764_81015_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
WP_001249412.1\|81186_81852_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000825957.1\|81848_82178_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_023227248.1\|82189_82651_+	NUDIX hydrolase	NA	NA	NA	NA
WP_000004540.1\|82704_83811_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
83330:83346	attR	NA	NA	NA	NA

DBSCAN-SWA_2

353229 : 362311

Ralstonia_phage(16.67%)

protease,integrase

attL 342637:342649|attR 365682:365694

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
342637:342649	attL	NA	NA	NA	NA
WP_080155296.1\|353229_354471_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	2.5e-75	40.7
WP_023243338.1\|354998_355376_+\|integrase	phage integrase	NA	NA	NA	NA
WP_001117984.1\|355537_355735_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|355947_358224_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|358254_358575_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|358898_359120_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125893.1\|359249_361196_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_023202044.1\|361192_362311_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
365682:365694	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1444084 : 1449890

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165882479.1\|1444084_1444966_-	poxvirus D5 -like family protein	Q7M2A8	Enterobacteria_phage	3.3e-154	91.5
WP_165882400.1\|1444983_1445829_-	hypothetical protein	Q7M2A8	Enterobacteria_phage	1.5e-135	86.6
WP_165882402.1\|1446425_1446746_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216597.1\|1446742_1446970_-	hypothetical protein	NA	NA	NA	NA
WP_000979749.1\|1446966_1447518_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.2e-29	64.5
WP_000556587.1\|1447514_1447781_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_162491381.1\|1447885_1448014_+	hypothetical protein	NA	NA	NA	NA
WP_023244191.1\|1448321_1449065_+	hypothetical protein	NA	NA	NA	NA
WP_000468231.1\|1449068_1449308_+	hypothetical protein	Q7M294	Enterobacteria_phage	2.4e-19	59.3
WP_000214429.1\|1449323_1449890_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.9e-61	65.9

DBSCAN-SWA_4

1713948 : 1758726

Burkholderia_phage(40.91%)

tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001182228.1\|1713948_1714947_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_023242904.1\|1715034_1716345_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416272.1\|1716591_1717107_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|1717206_1717416_-	CsbD family protein	NA	NA	NA	NA
WP_010989093.1\|1717437_1717551_-	hypothetical protein	NA	NA	NA	NA
WP_001128113.1\|1717547_1718873_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|1719051_1719660_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002900.1\|1719768_1720137_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|1720307_1722728_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|1722826_1723699_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019219.1\|1723712_1724210_-	chorismate lyase	NA	NA	NA	NA
WP_001749156.1\|1724390_1725308_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973681.1\|1725471_1726830_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|1726918_1728028_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000695415.1\|1728389_1729580_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_023242906.1\|1729711_1731256_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_020845801.1\|1731270_1732161_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982752.1\|1732326_1732737_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000750805.1\|1732879_1734976_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977959.1\|1734975_1735713_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_122821798.1\|1735709_1736378_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|1736411_1736654_-	outer membrane protein	NA	NA	NA	NA
WP_000790028.1\|1737097_1738747_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136394.1\|1739091_1740441_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615248.1\|1740571_1740919_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226440.1\|1741494_1741782_+	membrane protein	Q6QIC8	Burkholderia_phage	5.1e-16	48.1
WP_001270438.1\|1741784_1742390_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	6.5e-61	60.4
WP_000777266.1\|1742402_1742717_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449433.1\|1742876_1743332_+	hypothetical protein	NA	NA	NA	NA
WP_023242908.1\|1743328_1743526_+	hypothetical protein	Q6QIB1	Burkholderia_phage	6.6e-07	52.9
WP_023242909.1\|1743515_1744943_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	8.1e-195	71.2
WP_000907495.1\|1744942_1745467_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003640.1\|1745518_1745836_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|1745795_1745924_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_080155326.1\|1746020_1748375_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.4e-66	30.6
WP_023242911.1\|1748374_1749328_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
WP_001269716.1\|1749327_1749537_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_023244444.1\|1749524_1750568_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.2e-76	45.1
WP_000679393.1\|1750577_1751300_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000593182.1\|1751627_1751990_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703633.1\|1751986_1752916_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	1.4e-150	84.1
WP_000632053.1\|1752915_1754463_+	hypothetical protein	B9UDL6	Salmonella_phage	3.8e-49	29.9
WP_001093501.1\|1754626_1754986_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001749150.1\|1754976_1756092_+	bacteriophage protein	Q6QI99	Burkholderia_phage	4.1e-101	52.0
WP_001749149.1\|1756084_1756717_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.9e-23	55.6
WP_000368203.1\|1756719_1758201_+\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
WP_001177097.1\|1758210_1758726_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.4e-34	41.2

DBSCAN-SWA_5

3267251 : 3273055

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165882306.1\|3267251_3269585_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.0
WP_000743145.1\|3269599_3269920_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216597.1\|3269916_3270144_-	hypothetical protein	NA	NA	NA	NA
WP_000979749.1\|3270140_3270692_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.2e-29	64.5
WP_001604627.1\|3270688_3270955_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.7e-29	70.5
WP_039500098.1\|3271492_3272230_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.2e-78	63.6
WP_000984211.1\|3272226_3272472_+	transcriptional regulator	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_000210078.1\|3272488_3273055_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.7e-56	62.7

DBSCAN-SWA_6

3276585 : 3372575

Salmonella_phage(53.52%)

tail,head,capsid,holin,integrase,portal,plate,tRNA,terminase,lysis

attL 3280698:3280715|attR 3351080:3351097

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001536726.1\|3276585_3277611_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	9.9e-203	100.0
WP_000052560.1\|3277614_3278247_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
WP_000102104.1\|3278363_3278603_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	8.8e-38	98.7
WP_079809624.1\|3278638_3279148_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.5e-82	92.3
WP_000957775.1\|3279155_3279389_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
WP_000166366.1\|3279336_3279795_-	hypothetical protein	NA	NA	NA	NA
WP_000963195.1\|3280014_3280356_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
WP_001244234.1\|3280423_3280657_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
WP_000785509.1\|3280656_3280884_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
3280698:3280715	attL	NA	NA	NA	NA
WP_000104119.1\|3280880_3281738_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	1.3e-128	80.0
WP_079964478.1\|3281728_3284140_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.8
WP_001154444.1\|3284295_3284484_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
WP_000790439.1\|3284552_3284852_-	hypothetical protein	NA	NA	NA	NA
WP_063328720.1\|3284962_3285841_-	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	3.0e-51	49.8
WP_001284991.1\|3286290_3287955_+	AIPR family protein	E5G6M2	Salmonella_phage	0.0e+00	100.0
WP_063328721.1\|3288058_3289099_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	7.9e-200	99.7
WP_080155336.1\|3289098_3290865_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	97.4
WP_000216276.1\|3291007_3291841_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	3.1e-130	100.0
WP_063328723.1\|3291857_3292919_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	6.0e-195	99.7
WP_080155337.1\|3292922_3293573_+	hypothetical protein	E5G6M7	Salmonella_phage	9.2e-114	99.1
WP_063328725.1\|3293666_3294131_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	3.8e-85	98.7
WP_063328726.1\|3294130_3294334_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.9e-33	97.0
WP_000171565.1\|3294337_3294553_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_079964475.1\|3294533_3295049_+	lysozyme	E5G6N1	Salmonella_phage	6.7e-75	78.2
WP_063328728.1\|3295045_3295474_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	6.6e-52	80.7
WP_063328729.1\|3295569_3296001_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.9e-70	91.6
WP_063328730.1\|3295993_3296437_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.6e-56	78.1
WP_023184683.1\|3296487_3298194_-	hypothetical protein	NA	NA	NA	NA
WP_063328731.1\|3298332_3298911_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.8e-105	97.4
WP_000177401.1\|3298907_3299267_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	1.4e-58	98.3
WP_000268275.1\|3299253_3300162_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	3.2e-157	98.3
WP_063328732.1\|3300154_3300760_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.4e-116	98.0
WP_001274653.1\|3300756_3302523_+\|tail	tail fiber protein	A0A1S6KZZ8	Salmonella_phage	4.7e-136	52.3
WP_000680168.1\|3302525_3303053_+\|tail	tail protein	NA	NA	NA	NA
WP_000046109.1\|3303183_3304356_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.7e-223	99.7
WP_001207647.1\|3304365_3304881_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	9.3e-93	100.0
WP_001280962.1\|3304935_3305238_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
WP_000763316.1\|3305252_3305372_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
WP_080155390.1\|3305364_3308172_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.3
WP_000980409.1\|3308168_3308654_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
WP_165882439.1\|3308650_3309751_+	phage late control D family protein	E5G6Q3	Salmonella_phage	3.8e-192	95.1
WP_000980498.1\|3309819_3310038_+	hypothetical protein	Q53ZE7	Salmonella_virus	2.1e-38	100.0
WP_072101134.1\|3310589_3311753_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_023244174.1\|3311760_3313941_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_038389487.1\|3315412_3326887_-	biofilm-associated protein BapA	NA	NA	NA	NA
WP_001518569.1\|3327506_3327989_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242603.1\|3328138_3328615_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001112990.1\|3328604_3328895_+	RnfH family protein	NA	NA	NA	NA
WP_001203445.1\|3329060_3329399_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001525072.1\|3329547_3331209_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059155.1\|3331294_3332173_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|3332295_3332886_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_023243603.1\|3332920_3333526_-	hypothetical protein	NA	NA	NA	NA
WP_127172650.1\|3333646_3334933_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|3334952_3335744_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460052.1\|3335909_3337271_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|3337584_3337833_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|3337851_3338400_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469807.1\|3338444_3339212_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065257.1\|3339252_3339600_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_001030985.1\|3339756_3340977_-	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_001212380.1\|3340969_3341488_-	YfiR family protein	NA	NA	NA	NA
WP_001168062.1\|3341928_3342999_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_000225191.1\|3343008_3344130_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000210990.1\|3344187_3345096_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000200080.1\|3345056_3346217_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_010989056.1\|3346316_3346364_-	hypothetical protein	NA	NA	NA	NA
WP_024132356.1\|3346527_3347520_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.4e-108	58.2
WP_000185337.1\|3347586_3347892_-	helix-turn-helix transcriptional regulator	A0A0M5M1I9	Salmonella_phage	1.6e-15	47.5
WP_000661531.1\|3347989_3348328_+	hypothetical protein	NA	NA	NA	NA
WP_079960662.1\|3348353_3348686_+	hypothetical protein	NA	NA	NA	NA
WP_079960661.1\|3348695_3349265_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	3.4e-43	46.3
WP_076009995.1\|3349267_3349486_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	5.2e-05	41.7
WP_079960660.1\|3349524_3352182_+	bifunctional DNA primase/helicase	A0A077K8T2	Ralstonia_phage	7.9e-244	47.3
3351080:3351097	attR	NA	NA	NA	NA
WP_000088096.1\|3352209_3352533_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	1.3e-36	73.1
WP_023210894.1\|3352532_3353552_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.1e-134	68.1
WP_054175274.1\|3353548_3355333_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.9e-246	69.5
WP_023375469.1\|3355543_3356380_+\|capsid	capsid scaffolding protein	F1BUM4	Cronobacter_phage	3.6e-46	52.3
WP_001176503.1\|3356414_3357443_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.7e-133	71.6
WP_001177276.1\|3357454_3358153_+\|terminase	terminase	F1BUM0	Cronobacter_phage	3.6e-63	52.6
WP_031602415.1\|3358212_3358704_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.3e-48	64.7
WP_000080871.1\|3358700_3359183_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.3e-37	48.7
WP_001534848.1\|3359179_3359884_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.8e-70	59.9
WP_001748058.1\|3359880_3361008_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	2.1e-174	83.5
WP_054175275.1\|3361004_3361460_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	2.3e-58	70.9
WP_001154426.1\|3361472_3361769_+\|holin	holin	C7BGD7	Burkholderia_phage	2.4e-16	48.2
WP_054175276.1\|3361765_3362107_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	7.6e-51	93.1
WP_054175277.1\|3362106_3362439_+	hypothetical protein	F1BUL2	Cronobacter_phage	9.7e-35	69.1
WP_000411500.1\|3362585_3362843_+	hypothetical protein	A5X9I7	Aeromonas_virus	2.3e-20	61.0
WP_000811098.1\|3363030_3364998_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	4.3e-271	70.7
WP_001002797.1\|3364994_3365324_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_054175278.1\|3365320_3366505_+	hypothetical protein	F1BUK6	Cronobacter_phage	1.1e-178	78.4
WP_001001824.1\|3366497_3367085_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.1e-89	82.1
WP_054175279.1\|3367094_3369107_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.1e-148	81.2
WP_001215677.1\|3369109_3369640_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	4.4e-13	32.4
WP_000267951.1\|3369629_3370355_+	hypothetical protein	F1BUK1	Cronobacter_phage	6.6e-68	56.4
WP_000200789.1\|3370326_3370872_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
WP_054175283.1\|3370874_3372575_+	hypothetical protein	F1BUJ7	Cronobacter_phage	2.2e-223	81.3

DBSCAN-SWA_7

3859068 : 3868239

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|3859068_3860016_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
WP_000824854.1\|3859999_3860731_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|3860711_3860819_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|3860878_3861610_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_023243038.1\|3861832_3863518_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.9e-278	91.1
WP_000598637.1\|3863514_3864234_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|3864280_3864748_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_165882447.1\|3864804_3865335_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|3865506_3865965_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195332.1\|3866205_3868239_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_8

3936330 : 3942627

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023244537.1\|3936330_3937734_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981469.1\|3937911_3938805_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|3939181_3940267_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023662.1\|3940266_3941166_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_023243995.1\|3941213_3942092_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	64.1
WP_001100808.1\|3942096_3942627_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.8e-52	57.1

DBSCAN-SWA_9

4052887 : 4060136

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023243860.1\|4052887_4053307_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457663.1\|4053309_4054578_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.3e-227	91.9
WP_000208509.1\|4055032_4055245_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|4055255_4055444_+	hypothetical protein	NA	NA	NA	NA
WP_001080661.1\|4055703_4056897_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	3.0e-110	56.2
WP_000107435.1\|4057545_4057857_+	hypothetical protein	NA	NA	NA	NA
WP_023243859.1\|4057936_4058632_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_023243858.1\|4058705_4060136_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_10

4163889 : 4171652

Enterobacteria_phage(28.57%)

integrase

attL 4166099:4166121|attR 4178222:4178244

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080155354.1\|4163889_4164120_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	6.5e-14	58.8
WP_000168393.1\|4164257_4164632_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_072101102.1\|4164632_4165508_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|4165524_4165878_+	YebY family protein	NA	NA	NA	NA
4166099:4166121	attL	NA	NA	NA	NA
WP_020438172.1\|4166249_4167329_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.3e-99	52.0
WP_023244250.1\|4167325_4168432_-	exodeoxyribonuclease 8	Q9QF34	Lambdoid_phage	1.4e-53	65.0
WP_165882455.1\|4168462_4168693_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	5.1e-27	92.1
WP_001050883.1\|4168746_4169280_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
WP_000789530.1\|4169536_4169704_-	lytic enzyme	NA	NA	NA	NA
WP_001521334.1\|4169768_4169957_-	hypothetical protein	NA	NA	NA	NA
WP_000348541.1\|4170011_4170503_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	7.1e-42	56.2
WP_023244117.1\|4171055_4171652_+	hypothetical protein	Q1MVL8	Enterobacteria_phage	7.8e-35	43.1
4178222:4178244	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045514

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP045513

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection