CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022843	Halomonas hydrothermalis strain Slthf2	2 crisprs	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csx1,DEDDh,Cas9_archaeal,cas14j,csa3,PD-DExK,DinG,WYL,RT	0	20	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022843_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022843_1

240140-242670

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	CRISPRCasFinder
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CRT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	PILER-CR
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	PILER-CR

41 spacers

cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,WYL

The CRISPR arrays of NZ_AP022843_1

>merge|NZ_AP022843|1|240140-242670|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTCTTCCCCACGCCCGTGGGGGTGTTTCTTAATTATTGCCATTATCCTAGCAGACGATCCCGTCTTCCCCACGCCCGTGGGGGTGTTTCTAAATTGCATGGCGTAAGTGACTATGTTTATCAGTCTTCCCCACGCCCGTGGGGGTGTTTCTGCGCGCTCTTTTCTTTGCGATCTGTTTAGAAAGTCTTCCCCACGCCCGTGGGGGTGTTTCTCTCTTACGGATGAGGCGGCATTTGAGATTATGGTCTTCCCCACGCCCGTGGGGGTGTTTCTAAACTGGCACGCACAGCAGCCTATAAAGCTGCGTCTTCCCCACGCCCGTGGGGGTGTTTCTGTAATATCGCATGGTAAAGCCCCTTTATATTAGTCTTCCCCACGCCCGTGGGGGTGTTTCCGGCTTTGCAGTACCTAGGATGGGATGGGGAGGGTCTTCCCCACGCCCGTGGGGGTGTTTCTACAACGCTCCACTAGCTCTTGTACCGTTCCCGGTCTTCCCCACGCCCGTGGGGGTGTTTCTGATCTTCTCGTAAAGCGCGTCGATGCGATCACGTCTTCCCCACGCCCGTGGGGGTGTTTCTAATGCTTATAGGCAGACCTGGAAGCAAGCCTGGTCTTCCCCACGCCCGTGGGGGTGTTTCTGCTGGCATTCTTCGCACCCGCTGGATACAGAGGTCTTCCCCACGCCCGTGGGGGTGTTTCTGTCTAACTCTTCAAGCTTGCGTCGATTGGTATGTCTTCCCCACGCCCGTGGGGGTGTTTCTATTGCGCAAGAACAACAAGCCGCTGAGTTAAAGTCTTCCCCACGCCCGTGGGGGTGTTTCCTCTTGTACCGTTCCCGTGCCGTCGTTGTAAAAGTCTTCCCCACGCCCGTGGGGGTGTTTCCGACTCAAGTTCGACACATACGACCACAACCAGGTCTTCCCCACGCCCGTGGGGGTGTTTCTCATCTTTAGGAGGTTACGTGGCACAAGAAGGCGTCTTCCCCACGCCCGTGGGGGTGTTTCTCCCACCATCGTTACATCCTCCCCATCCCATCCGTCTTCCCCACGCCCGTGGGGGTGTTTCTGGATAGCTTGTCTCGGTAGATAACTTTATCAGGTCTTCCCCACGCCCGTGGGGGTGTTTCTTGTCCATTGTTTGCAGACCGTAGCGCAGAACAGTCTTCCCCACGCCCGTGGGGGTGTTTCTATTATTCTTGGCAAGTGACAACCAATTCGGAGGTCTTCCCCACGCCCGTGGGGGTGTTTCCATTACCAACCTACGCAAGATTATCGACAATGGGTCTTCCCCACGCCCGTGGGGGTGTTTCTACTCACAAGAGAGTTGTCAGCAGACAAGCCTGAGTCTTCCCCACGCCCGTGGGGGTGTTTCTACTACGACGACTTAAGCGAAGAAACCGGTGAGGTCTTCCCCACGCCCGTGGGGGTGTTTCCGTGATGCTTTGACACACGTAAGCAAAATGGAGGTCTTCCCCACGCCCGTGGGGGTGTTTCCCATAAACGCTGACATGTTCATCCGTGCATTTGGTCTTCCCCACGCCCGTGGGGGTGTTTCTGACTATTCCCACTTACTGGATGAAAATGTGCTGTCTTCCCCACGCCCGTGGGGGTGTTTCCAGACTAGCACGCACAGCAGCCTATAAAGCTGCGTCTTCCCCACGCCCGTGGGGGTGTTTCCAGACTAGCACGCACAGCAGCCTATAAATCTGCGTCTTCCCCACGCCCGTGGGGGTGTTTCTATAAAGGGATGGTCATGCGATATTACATTATGGTCTTCCCCACGCCCGTGGGGGTGTTTCTGACTCACACTAAGGAGTACGTCGCGTGGAGAAGTCTTCCCCACGCCCGTGGGGGTGTTTCTGCCTGGGTGGTTTCATCTTGGATGCGGTTGATGTCTTCCCCACGCCCGTGGGGGTGTTTCTAGCTGATGTTATTTGCGATGTGCCGTGACGGCGTCTTCCCCACGCCCGTGGGGGTGTTTCTTGAGCAGAATATGATTGAGGCAATCCGTGACAGTCTTCCCCACGCCCGTGGGGGTGTTTCCAATCTTCATCAGACTGAATGCGACGAGATAAAGTCTTCCCCACGCCCGTGGGGGTGTTTCCAAAACTACGCAAAGCACAAGAAGACCTCTTACGTCTTCCCCACGCCCGTGGGGGTGTTTCCGCAGCTTGCCGGGCATAATCTGGTTGCCCACAGTCTTCCCCACGCCCGTGGGGGTGTTTCCTTTTTAGCATCAGCGGTGATGTTGGACGACACGTCTTCCCCACGCCCGTGGGGGTGTTTCTGGAGTATTCGCTGGCAAAAACAGCACGCTCGAGTCTTCCCCACGCCCGTGGGGGTGTTTCCCTTTAAGCGCCTAATTGAGGAGCCTGGATCTTGTCTTCCCCACGCCCGTGGGGGTGTTTCCAGGCATGGGCAGTCACTTGATGTAAGAAAGCCGTCTTCCCCACGCCCGTGGGGGTGTTTCCCAAATCGCGCACTCATCCTGGCTTGCCGCCAGGTCTTCCCCACGCCTGTGAGGATGCACCG

>NZ_AP022843|1|1|240140-242670|CRISPRCasFinder
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	TAATTATTGCCATTATCCTAGCAGACGATCCC
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	AAATTGCATGGCGTAAGTGACTATGTTTATCA
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GCGCGCTCTTTTCTTTGCGATCTGTTTAGAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	CTCTTACGGATGAGGCGGCATTTGAGATTATG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	AAACTGGCACGCACAGCAGCCTATAAAGCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GTAATATCGCATGGTAAAGCCCCTTTATATTA
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	GGCTTTGCAGTACCTAGGATGGGATGGGGAGG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	ACAACGCTCCACTAGCTCTTGTACCGTTCCCG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GATCTTCTCGTAAAGCGCGTCGATGCGATCAC
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	AATGCTTATAGGCAGACCTGGAAGCAAGCCTG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GCTGGCATTCTTCGCACCCGCTGGATACAGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GTCTAACTCTTCAAGCTTGCGTCGATTGGTAT
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	ATTGCGCAAGAACAACAAGCCGCTGAGTTAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	TCTTGTACCGTTCCCGTGCCGTCGTTGTAAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	GACTCAAGTTCGACACATACGACCACAACCAG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	CATCTTTAGGAGGTTACGTGGCACAAGAAGGC
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	CCCACCATCGTTACATCCTCCCCATCCCATCC
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GGATAGCTTGTCTCGGTAGATAACTTTATCAG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	TGTCCATTGTTTGCAGACCGTAGCGCAGAACA
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	ATTATTCTTGGCAAGTGACAACCAATTCGGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	ATTACCAACCTACGCAAGATTATCGACAATGG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	ACTCACAAGAGAGTTGTCAGCAGACAAGCCTGA
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	ACTACGACGACTTAAGCGAAGAAACCGGTGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	GTGATGCTTTGACACACGTAAGCAAAATGGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	CATAAACGCTGACATGTTCATCCGTGCATTTG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GACTATTCCCACTTACTGGATGAAAATGTGCT
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	AGACTAGCACGCACAGCAGCCTATAAAGCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	AGACTAGCACGCACAGCAGCCTATAAATCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	ATAAAGGGATGGTCATGCGATATTACATTATG
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GACTCACACTAAGGAGTACGTCGCGTGGAGAA
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GCCTGGGTGGTTTCATCTTGGATGCGGTTGAT
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	AGCTGATGTTATTTGCGATGTGCCGTGACGGC
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	TGAGCAGAATATGATTGAGGCAATCCGTGACA
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	AATCTTCATCAGACTGAATGCGACGAGATAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	AAAACTACGCAAAGCACAAGAAGACCTCTTAC
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	GCAGCTTGCCGGGCATAATCTGGTTGCCCACA
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	TTTTTAGCATCAGCGGTGATGTTGGACGACAC
GTCTTCCCCACGCCCGTGGGGGTGTTTCT	GGAGTATTCGCTGGCAAAAACAGCACGCTCGA
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	CTTTAAGCGCCTAATTGAGGAGCCTGGATCTT
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	AGGCATGGGCAGTCACTTGATGTAAGAAAGCC
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	CAAATCGCGCACTCATCCTGGCTTGCCGCCAG
GTCTTCCCCACGCCTGTGAGGATGCACCG

>NZ_AP022843|1|1|240140-242669|CRT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TTAATTATTGCCATTATCCTAGCAGACGATCCC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAAATTGCATGGCGTAAGTGACTATGTTTATCA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGCGCGCTCTTTTCTTTGCGATCTGTTTAGAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TCTCTTACGGATGAGGCGGCATTTGAGATTATG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAAACTGGCACGCACAGCAGCCTATAAAGCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGTAATATCGCATGGTAAAGCCCCTTTATATTA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGGCTTTGCAGTACCTAGGATGGGATGGGGAGG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TACAACGCTCCACTAGCTCTTGTACCGTTCCCG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGATCTTCTCGTAAAGCGCGTCGATGCGATCAC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAATGCTTATAGGCAGACCTGGAAGCAAGCCTG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGCTGGCATTCTTCGCACCCGCTGGATACAGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGTCTAACTCTTCAAGCTTGCGTCGATTGGTAT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TATTGCGCAAGAACAACAAGCCGCTGAGTTAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CTCTTGTACCGTTCCCGTGCCGTCGTTGTAAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGACTCAAGTTCGACACATACGACCACAACCAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TCATCTTTAGGAGGTTACGTGGCACAAGAAGGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TCCCACCATCGTTACATCCTCCCCATCCCATCC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGGATAGCTTGTCTCGGTAGATAACTTTATCAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TTGTCCATTGTTTGCAGACCGTAGCGCAGAACA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TATTATTCTTGGCAAGTGACAACCAATTCGGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CATTACCAACCTACGCAAGATTATCGACAATGG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TACTCACAAGAGAGTTGTCAGCAGACAAGCCTGA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TACTACGACGACTTAAGCGAAGAAACCGGTGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGTGATGCTTTGACACACGTAAGCAAAATGGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CCATAAACGCTGACATGTTCATCCGTGCATTTG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGACTATTCCCACTTACTGGATGAAAATGTGCT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAGACTAGCACGCACAGCAGCCTATAAAGCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAGACTAGCACGCACAGCAGCCTATAAATCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TATAAAGGGATGGTCATGCGATATTACATTATG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGACTCACACTAAGGAGTACGTCGCGTGGAGAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGCCTGGGTGGTTTCATCTTGGATGCGGTTGAT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAGCTGATGTTATTTGCGATGTGCCGTGACGGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TTGAGCAGAATATGATTGAGGCAATCCGTGACA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAATCTTCATCAGACTGAATGCGACGAGATAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAAAACTACGCAAAGCACAAGAAGACCTCTTAC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGCAGCTTGCCGGGCATAATCTGGTTGCCCACA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CTTTTTAGCATCAGCGGTGATGTTGGACGACAC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGGAGTATTCGCTGGCAAAAACAGCACGCTCGA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CCTTTAAGCGCCTAATTGAGGAGCCTGGATCTT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAGGCATGGGCAGTCACTTGATGTAAGAAAGCC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CCAAATCGCGCACTCATCCTGGCTTGCCGCCAG
GTCTTCCCCACGCCTGTGAGGATGCACC

>NZ_AP022843|1|1|240262-242364|PILER-CR
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGCGCGCTCTTTTCTTTGCGATCTGTTTAGAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TCTCTTACGGATGAGGCGGCATTTGAGATTATG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAAACTGGCACGCACAGCAGCCTATAAAGCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGTAATATCGCATGGTAAAGCCCCTTTATATTA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGGCTTTGCAGTACCTAGGATGGGATGGGGAGG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TACAACGCTCCACTAGCTCTTGTACCGTTCCCG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGATCTTCTCGTAAAGCGCGTCGATGCGATCAC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAATGCTTATAGGCAGACCTGGAAGCAAGCCTG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGCTGGCATTCTTCGCACCCGCTGGATACAGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGTCTAACTCTTCAAGCTTGCGTCGATTGGTAT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TATTGCGCAAGAACAACAAGCCGCTGAGTTAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CTCTTGTACCGTTCCCGTGCCGTCGTTGTAAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGACTCAAGTTCGACACATACGACCACAACCAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TCATCTTTAGGAGGTTACGTGGCACAAGAAGGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TCCCACCATCGTTACATCCTCCCCATCCCATCC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGGATAGCTTGTCTCGGTAGATAACTTTATCAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TTGTCCATTGTTTGCAGACCGTAGCGCAGAACA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TATTATTCTTGGCAAGTGACAACCAATTCGGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CATTACCAACCTACGCAAGATTATCGACAATGG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TACTCACAAGAGAGTTGTCAGCAGACAAGCCTGA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TACTACGACGACTTAAGCGAAGAAACCGGTGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGTGATGCTTTGACACACGTAAGCAAAATGGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CCATAAACGCTGACATGTTCATCCGTGCATTTG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGACTATTCCCACTTACTGGATGAAAATGTGCT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAGACTAGCACGCACAGCAGCCTATAAAGCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAGACTAGCACGCACAGCAGCCTATAAATCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TATAAAGGGATGGTCATGCGATATTACATTATG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGACTCACACTAAGGAGTACGTCGCGTGGAGAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGCCTGGGTGGTTTCATCTTGGATGCGGTTGAT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAGCTGATGTTATTTGCGATGTGCCGTGACGGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TTGAGCAGAATATGATTGAGGCAATCCGTGACA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAATCTTCATCAGACTGAATGCGACGAGATAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAAAACTACGCAAAGCACAAGAAGACCTCTTAC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGCAGCTTGCCGGGCATAATCTGGTTGCCCACA
GTCTTCCCCACGCCCGTGGGGGTGTTTCCTTTTTAGCATCAGCGGTGATGTTGGACGACACGTCTTCCCCACGCCCGTGGGGGTGTTTCT	GGAGTATTCGCTGGCAAAAACAGCACGCTCGA
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	CTTTAAGCGCCTAATTGAGGAGCCTGGATCTT
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	AGGCATGGGCAGTCACTTGATGTAAGAAAGCC


>NZ_AP022843|1|2|242398-242609|PILER-CR
	TGCGCGCTCTTTTCTTTGCGATCTGTTTAGAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TCTCTTACGGATGAGGCGGCATTTGAGATTATG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAAACTGGCACGCACAGCAGCCTATAAAGCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGTAATATCGCATGGTAAAGCCCCTTTATATTA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGGCTTTGCAGTACCTAGGATGGGATGGGGAGG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TACAACGCTCCACTAGCTCTTGTACCGTTCCCG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGATCTTCTCGTAAAGCGCGTCGATGCGATCAC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAATGCTTATAGGCAGACCTGGAAGCAAGCCTG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGCTGGCATTCTTCGCACCCGCTGGATACAGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGTCTAACTCTTCAAGCTTGCGTCGATTGGTAT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TATTGCGCAAGAACAACAAGCCGCTGAGTTAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CTCTTGTACCGTTCCCGTGCCGTCGTTGTAAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGACTCAAGTTCGACACATACGACCACAACCAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TCATCTTTAGGAGGTTACGTGGCACAAGAAGGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TCCCACCATCGTTACATCCTCCCCATCCCATCC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGGATAGCTTGTCTCGGTAGATAACTTTATCAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TTGTCCATTGTTTGCAGACCGTAGCGCAGAACA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TATTATTCTTGGCAAGTGACAACCAATTCGGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CATTACCAACCTACGCAAGATTATCGACAATGG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TACTCACAAGAGAGTTGTCAGCAGACAAGCCTGA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TACTACGACGACTTAAGCGAAGAAACCGGTGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGTGATGCTTTGACACACGTAAGCAAAATGGAG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CCATAAACGCTGACATGTTCATCCGTGCATTTG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGACTATTCCCACTTACTGGATGAAAATGTGCT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAGACTAGCACGCACAGCAGCCTATAAAGCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAGACTAGCACGCACAGCAGCCTATAAATCTGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TATAAAGGGATGGTCATGCGATATTACATTATG
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGACTCACACTAAGGAGTACGTCGCGTGGAGAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TGCCTGGGTGGTTTCATCTTGGATGCGGTTGAT
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TAGCTGATGTTATTTGCGATGTGCCGTGACGGC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	TTGAGCAGAATATGATTGAGGCAATCCGTGACA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAATCTTCATCAGACTGAATGCGACGAGATAAA
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CAAAACTACGCAAAGCACAAGAAGACCTCTTAC
GTCTTCCCCACGCCCGTGGGGGTGTTTC	CGCAGCTTGCCGGGCATAATCTGGTTGCCCACA
GTCTTCCCCACGCCCGTGGGGGTGTTTCCTTTTTAGCATCAGCGGTGATGTTGGACGACACGTCTTCCCCACGCCCGTGGGGGTGTTTCT	GGAGTATTCGCTGGCAAAAACAGCACGCTCGA
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	CTTTAAGCGCCTAATTGAGGAGCCTGGATCTT
GTCTTCCCCACGCCCGTGGGGGTGTTTCC	AGGCATGGGCAGTCACTTGATGTAAGAAAGCC
GTCTTCCCCACGCCCGTGGGGGTGTTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022843.1\|WP_125744992.1\|245721_247128_+\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_AP022843.1\|WP_172419612.1\|238239_238950_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_AP022843.1\|WP_172419614.1\|239805_240093_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|187779
NZ_AP022843.1\|WP_172419618.1\|250040_250889_-\|ChaN-family-lipoprotein	unknown	unknown	gnl\|CDD\|377239
NZ_AP022843.1\|WP_172419617.1\|247500_248559_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226370
NZ_AP022843.1\|WP_125744996.1\|248555_249986_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_AP022843.1\|WP_125744988.1\|243959_244262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022843.1\|WP_172419615.1\|243071_243878_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
NZ_AP022843.1\|WP_172419620.1\|252135_252270_-\|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl\|CDD\|227797
NZ_AP022843.1\|WP_172422481.1\|237184_238231_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_AP022843.1\|WP_172422479.1\|229498_230233_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213202
NZ_AP022843.1\|WP_172419619.1\|250901_251078_-\|Lacal_2735-family-protein	unknown	unknown	unknown
NZ_AP022843.1\|WP_172419608.1\|230823_231789_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_AP022843.1\|WP_172419610.1\|235975_236527_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_AP022843.1\|WP_172422480.1\|234473_235970_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_AP022843.1\|WP_172419611.1\|236523_237168_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|187858
NZ_AP022843.1\|WP_172419613.1\|238952_239828_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_AP022843.1\|WP_172419616.1\|244625_245249_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022843.1\|WP_172419609.1\|231890_234470_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_AP022843.1\|WP_172422482.1\|251617_252130_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496

Protein	Function_ID	Function_description	E-value
NZ_AP022843.1\|WP_125744992.1\|245721_247128_+\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_AP022843.1\|WP_172419612.1\|238239_238950_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	1.18965e-51
NZ_AP022843.1\|WP_172419614.1\|239805_240093_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187779	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.85615e-35
NZ_AP022843.1\|WP_172419618.1\|250040_250889_-\|ChaN-family-lipoprotein	gnl\|CDD\|377239	pfam04187, Cofac_haem_bdg, Haem-binding uptake, Tiki superfamily, ChaN. This is a family of putative bacterial lipoproteins necessary for the uptake of haem-iron. The structure of UniProtKB:Q0PBW2, Structure 2g5g, comprises a large parallel beta-sheet with flanking alpha-helices and a smaller domain consisting of alpha-helices. Two cofacial haem groups (~3.5 Angstom apart with an inter-iron distance of 4.4 Angstrom) bind in a pocket formed by a dimer of two ChaN monomers.	1.3997e-68
NZ_AP022843.1\|WP_172419617.1\|247500_248559_+\|PAS-domain-containing-protein	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	4.26004e-129
NZ_AP022843.1\|WP_125744996.1\|248555_249986_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_AP022843.1\|WP_172419615.1\|243071_243878_+\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	1.70001e-65
NZ_AP022843.1\|WP_172419620.1\|252135_252270_-\|entericidin-A/B-family-lipoprotein	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	2.36597e-08
NZ_AP022843.1\|WP_172422481.1\|237184_238231_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.36098e-110
NZ_AP022843.1\|WP_172422479.1\|229498_230233_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213202	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.	2.9296e-78
NZ_AP022843.1\|WP_172419608.1\|230823_231789_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	7.98895e-45
NZ_AP022843.1\|WP_172419610.1\|235975_236527_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.06005e-25
NZ_AP022843.1\|WP_172422480.1\|234473_235970_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	6.01784e-76
NZ_AP022843.1\|WP_172419611.1\|236523_237168_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	7.16847e-51
NZ_AP022843.1\|WP_172419613.1\|238952_239828_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.72432e-118
NZ_AP022843.1\|WP_172419609.1\|231890_234470_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.48676e-81
NZ_AP022843.1\|WP_172422482.1\|251617_252130_-\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.90949e-06

>NZ_AP022843.1|WP_172419614.1|239805_240093_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVVVANDLPPAVRGRMKLWFVEPRANVFVSGVKDSVAKTVVDYLYQHCPPESGVVIFRSLPNPPGYEVRTVGPTRKALTEISGLQLVIETLKNQ
>NZ_AP022843.1|WP_172419613.1|238952_239828_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MAAGQRLFVKVTRDSLPQVKDKYPFLYLERGRLEIDDSSIKWIDSENSVVPLPVATLNALLLGPGTSITHDAVKTAVAANCSVCWVGEDSLLFYAAGFLPTADTRNLKQQIELSANPAKSVEVARRMFARRFPDADLEGKSLKEMMGMEGHRVRSLYQTKAEQYQVGWKGRKFVPGKFETSDVTNQVLTASNAALYGILCSAVHSMGYSPHIGFIHSGSPLPFVYDLADLYKEHLCIDLAFMLTRDMAGRYNKQKVSVAFRERVIEMDLLARLADDIPNMLGVSRARGRRK
>NZ_AP022843.1|WP_172419612.1|238239_238950_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MNDPYLLLWLEAPLQSWGHDSKFGRRDSLDFPTKSGVMGLLCCARGAGGKQADWLARWAERDMQVQAYVPAGKQGEALPRQPLMRDFHMVGSGYDDQDPWQNLLIPKTSEGKKAVGGGSKMTYRYYLQDMAFAVALQGAHEELAELEAALQNPVWDLYLGRKNCVPTEFIVQGIHADEEQAMDKARQLATSKNRLPIFKVLQGEYEGEVLTLNDVPVQFGEHKLYRDRRVTVLTED
>NZ_AP022843.1|WP_172422481.1|237184_238231_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTNAYTSTRIEYHILQSFPVTCLNRDDVGAPKSAIVGGVPRARVSSQCWKRQVRLAMQELGVKLGIRTKKASEIFIKACSEAGASEEQAAACGTKIATQLTDDTLLFVSETEAAAFAAYAAEKEFDDSKIKDKELAKVAKKALNPAEDSLDIALFGRMVAKAAGMNVEAAAAFSHAISTHKVSNEVEFFTALDDLQEEPGSAHMGSLEFNSATYYRYISLDLGQLAQTMGETDLKEAVEAFTKALFLAVPNARQTTQSGASHWDFARVMVRRGQRLQVPFETPVSKAREGGYLQASIDRLKTELDKKEKLAGSLFGKQGSYDWGENEDYSVDSLISDLQSHIAANPAQ
>NZ_AP022843.1|WP_172419611.1|236523_237168_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSMVASALHLDRRSVKALRITDAYSLHRVIYSLYDDVRDEADKVASKASGILYADQGGDFRGRKILMLSNRAPKTSVDGQYGEVLSKPISESFLEHDQYHFKVIVNPTRRDSASRKLFAVRGRDDVAQWFTERATKSWGFDVSPQHLQVDKIEVLQFKDKHQRQVTIGQAHVQGLLRVTDKQQFMHSFMQGIGRARAYGCGLLQVVPITENPFA
>NZ_AP022843.1|WP_172419610.1|235975_236527_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MQEAQATPPPNKPKSSDEKFVDTVIAHCLKDKGLAARLRRADNPAMEYQSWELLGSLSYLGIDLEVDYKRIPYVTVASAIAKAKAERNGTLSLGRAIAACYEDGRDSAQAKTRLRRLLASSELAEVCRLLRPVLTLIDSKVGQPVDYIRLLRQLRFFGHRTKTQWAQEFYGQSVPVDKQEAAT
>NZ_AP022843.1|WP_172422480.1|234473_235970_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MECRFNLIDEPWIPVADYGRVSLRQIFSNLEYRSLGGNPVQKIALLKLLLAIAQAAATPKDEAEWKALGAQGLAERCLSYLDKWHDRFYLYGDKPFLQMPAIKSARVQSYGAVLPEVSTGNTTVLSQQQVQKHLDDSERALLLLTLMGFALSGKKTDNSVVLTEGYAGKKNDKGKPSTGKPGPSVGHMGFLHSFLIGSDVPKTLWLNLFTRRQLEEMNCYPDGVGIAPWEQMPEGEDCEHAKQLKRALMGRLIPVCRFCFLTEDGIHYSEGVSHPGYKEGGVDPSTAVNYSGKELKALWVDPEKRPWRELTSLLGFFGQSDSQGFQSWQLRNGLGRAQEKTNAFAIWSGGLRVSSNAGEQYASGSDDFVESQVWLDSSILGDIWFSQLKKEMDAINDLAKNLYGRVQGVYKEQTVDGSKVAPLATRHFWQLCERDFQDLVDQCDQTEQAANDRHKLRRRFAGYVHQAYDQYCPRETARQLDAWAKCRPNNSKYLKQEA
>NZ_AP022843.1|WP_172419609.1|231890_234470_+|CRISPR-associated-helicase-Cas3'
MLRKKSSNVSSGEVKPYAACPAKSFTADDGRIRPGLSVESHCQIVGEVAKELIRRFPLQGIFPQGAAYLAATHDIGKVSPTFFNKIMRACSLERVPNANPDLEREWGGHAGVSQATAKAMGAPEYVPEILGQHHGFSPNLAGKRADAEVFGGTLWQKEREKLAKTLSESLGEDWPQIESVAQARLLAGLTSVADWIGSGHHFEDPNASWKEKIPQAIDDAGFVPASYQQNLSFEQVFGFAPRLAQSTLIEKASRPGVYVFEAPMGLGKTEAALYVAYQMLASRQASGIYFALPTQLTSNKIFERFEGFLASVLANSCLHRSLLLHANAWLFDTELGEEGRPGGAWFNQSKRGLLAPFAVGTIDQALMAAMNVKHGFVRAFGLAGKVVILDEIHTYDAYTSTLLDALVSLLRELHCTVIILSATLNQERRQGLLKRSLTSVGYPLITASRNDESVAQEVSVPAGKSSRVEIVIKPDETAAIEHVLLCAEQGQQVLWIENTVKAAQQRYLDIAARAADLGIGCGLLHSRFTASDRQQIEEKWVNLFGKSGWQDRQKQGRILVGTQVLEQSLDIDADFMVSRFAPTDMLLQRLGRLWRHSETPRCSKAKPQAWVLAPALDTAIEAPETQFGASAYVYSPYVLCRSLEVWQDMMHVDLPKDIRSLIDRTYVSRTEQNASMSRWLRELEEGNRHRKGLNALRQLARIGLSEGGNTLPESKAQTRYSESESYEVLLLKAMTRNRAGDTATLTLLNGEQLELPLQRHKLTKPEWRQRTAVLMRQIVNVPQGDKPNALSMETLKNFGLGHCFYLGNPEWPEDESLLRVALVDASDRLQGVEHNDVHDKHALEYRNDLGYRVIKNRGK
>NZ_AP022843.1|WP_172419608.1|230823_231789_+|YafY-family-transcriptional-regulator
MSRIDRIYKIHEILRAARHPVAMRVLMDELEASRNTITRDFEFLRDSLGAPLEYCREYNGHRYDPDAPSFELPGLWMTPAELHALLACEHLLENVQPGLIASHLSPLKKKVQQLLGESGHDAEQISERIRIQPIQNRISKNRVFDPVAQATLAGHCLEFSYQSRSDTSDSQSRCVHPQRLLHYRSNWYLLAHCERARALRLFSLDRISNICITEADCHRLSSSELDTFAFAGFGIFGGQPRDVAHLRFSEHAAKWVAEEKWHSEQESQWQADGYHLKVPYADDRELVMEILRYGSEVEVLEPNELRSEVASRVKKMKEIYW
>NZ_AP022843.1|WP_172422479.1|229498_230233_-|ABC-transporter-ATP-binding-protein
MSERSLSRLQLHDLHLAQGGRTVLEHIDGDIKPGAITALIGANGAGKSTLIQAIMGELRPISGKVICTVDKARRAWLPQQLALDLTFPMSVEELVMTGSWPSHGALKGYCAAHYRKGRDIMARLGISHLAHRPLGELSGGQRQRALIGRTLMQEAELLLLDEPFANVDSDTVDILIRILRQMADEGVTIIIVLHDMDHLSCLADEVLMLNGGHGRWVAPSALNHQHASAKVVPFALGGRHAGTA
>NZ_AP022843.1|WP_172419615.1|243071_243878_+|mechanosensitive-ion-channel
MENFLEQFGAYVPLIINAVKALLVLIVGWMAAGIVSSLVRKRVNAIPRIDPTLGNFLAALVKWGILLVVFITVLGLFGIQATSLVAVLGAATLAIGLALQGTLSDLAAGFMLIVFRPYKLGQFVDIGGTSGTVKDLNLFVTELVTPDNVQIIVPNGQAWGAIITNFSHHSTRRVDLVFGIGYDDDADLAMAIISGLAEADSRIHSDPAPWVKVTNLGASSVDLSVRLWVDAADYWDVKFDMTKAVKEAFDKQGVSIPYPHSVEIQKAG
>NZ_AP022843.1|WP_125744988.1|243959_244262_-|hypothetical-protein
MHQHIEWDEPGSASVVEFFKNDPDHNPPYPGAMLSARYLGRIVRVKVEAYRDEDAVSIGTVAAILDRHGHHHDSHHELNVGDIVRLPDDKRAMEHWDEDD
>NZ_AP022843.1|WP_172419616.1|244625_245249_-|hypothetical-protein
MGTVCFIVDASVTGALLPRHLRTIRQTGFADHTLPIIVTSATPDPRMPDIEQRYHAHFLVTPSQPLGARINHAAYLSQADWLLIAMQQQTPVAKLWCLLYPQLDTYTLDAFLIGSEPPRLSERLLQCFLGAGVAVPPYIAIRRTWLERLGGLDPELDEAALADLLQRLYACPTRLQTFSIDASGVRRGSLSRSNKPYRPPPSSHTDS
>NZ_AP022843.1|WP_125744992.1|245721_247128_+|glutamate--ammonia-ligase
MSAKTLALIEEHDVKWVDLRFTDTRGKEQHVTVPARDVDEEFFENGQMFDGSSIEGWKGINESDMILRPEDGTGFLDPFTEDATLILRCDIIEPATMQGYDRDPRSIAKRAEAYLQSTGLGDTAFFGPEPEFFIFDEVHWKSDIQGSMYKITSDEGAWATSNQVEGGNLGHRPRVKGGYFPVPPVDSFHDIRGAMCNTLEAIGQTVEVHHHEVANAGQNEIGVKFNTLVKKADEVQEMKYVIHNVAHAYGKTATFMPKPLVGDNGSGMHVHQSFWKDGQNQFAGDEYAGLSEMALYYIGGVIKHARALNAFTNASTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYTASPKGKRVETRFPDPTANPYLSFAALLMAGIDGIKNKIHPGDAMDKNLYDLPPEEGKSVPTVANSLDQALEALDADRAFLTEGGVFTDDMIDAYIDLKMEEVERIRMTTHPIEFDMYYSC
>NZ_AP022843.1|WP_172419617.1|247500_248559_+|PAS-domain-containing-protein
MYQRLLEHLTTAVLLLDGELRVRWMNPAAEALLAVSFSRVQGISLGTLLGGDESIDDVLAKARDAFHPYTQREARITPQNCEPLTVDYTVTPLSADELLLEVEPRDRLMQISREEALTTRQETIKVLARGLAHEVKNPLGGIRGAAQLLERDLDDPALREFTHIIVEEVDRLRDLVDSMLGPNRIVKHEPVNIHKVLERVRALLIAEHPHVEIRRDYDPSLPDLSGDESQMIQAVLNVARNAVQAMSDAATPSPELTLRTRARRQFTLGAERHRLVSEVGVIDNGPGIPETLRETLFYPMVSGRAEGSGLGLSIAQSILHQHQGLIECDSRPGHTEFRLLIPLVVNFTGEAS
>NZ_AP022843.1|WP_125744996.1|248555_249986_+|nitrogen-regulation-protein-NR(I)
MTEATQTDVARVVIVDDDRAIRWVLERALAQPDLDIECIERADTALERLLENPPDVLVTDIRMPGIDGLDLMSRVRDAHPDLPVIVMTAHSDLDSAVASYQGGAFEYLPKPFDVDEALALVRRAVAHARERQRPVSVPEGLSAEIIGEAPAMQEVFRAIGRLSHSHITVLINGESGTGKERVAQALHQHSPRAGKPFIALNMAAIPRDLIESELFGHEKGAFTGAAQQRQGRFEQANGGTLFLDEIGDMPAETQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLESLVDDGRFREDLFHRLNVIRVHLPRLAERREDIPRLTRHFLAEAAKELATDIKVLTPEAEAHLTRLPWPGNVRQLENICRWLTVMASGREILIEDLPPELRSLSASEGSVYGDWRSAFRDWADHALAEGHTHLLEEAVPDFERILIETALKHTGGRKGEAAELLGWGRNTLTRKLKTLLPALADDA
>NZ_AP022843.1|WP_172419618.1|250040_250889_-|ChaN-family-lipoprotein
MRHPFIAAMALGWLPLAAHADCPLPGQWWQSQHVVANSAILAQAVQHQVVLLGEQHDAIDHHRWQLHTLAGLYALRDDMVIGLEMLPREAQPVLDDWVAGLLSEEELLEQSRWEEHWGFDADLYLPILHFARVQRIPLVALNITPELRQRLARDGFSSVPIDQRHYIPAPLPPSAGYEMRLKDVFDQHAMGDDDPAMMKRFLQAQLSWDVAMAEGLADAALEGKLAVGLMGLGHVIYQDGVPHQLDGLGVDHTFSLLPWSTETCETPDPALADAVFVLPAAE
>NZ_AP022843.1|WP_172419619.1|250901_251078_-|Lacal_2735-family-protein
MFGLFKRNPKKKLQQDYERKLQAAMQASRNGDMRANATLTEEAEAILAEINRLKAEAH
>NZ_AP022843.1|WP_172422482.1|251617_252130_-|alpha/beta-hydrolase
MVTIYLSHGLESGPGALKVQALKGVAEKFENCEPVVMDYRGLKEPQKRLEHLLSVIDQRNDTLANCVLAGSSLGGWLSAAVSAQEPVLGCFLLAPALGLPDYPQTSLTLQAQHTHIIHGWRDDVVPPGPVIEHARCQRLSLRMMDDDHRLQNSLDTILADFERFLALCLQ
>NZ_AP022843.1|WP_172419620.1|252135_252270_-|entericidin-A/B-family-lipoprotein
MKRAIAISVLMMVTLLLVSGCNTIRGAGEDIERGGEAIQRSAGS

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Crispr_ID: NZ_AP022843_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022843_2

2562300-2562406

Orphan

Consensus_repeat	Method
TGTTCAGTACTACATTTTTCCAATCTCTCCTGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022843_2

>merge|NZ_AP022843|2|2562300-2562406|CRISPRCasFinder
TGTTCAGTACTACATTTTTCCAATCTCTCCTGAACACTATGCAATTGCTCGAGTAACAAGCCGTTTTCTTTCTGTTCAGTACTACGTTTTTCCAATCTCTCCTGAAC

>NZ_AP022843|2|2|2562300-2562406|CRISPRCasFinder
TGTTCAGTACTACATTTTTCCAATCTCTCCTGAAC	ACTATGCAATTGCTCGAGTAACAAGCCGTTTTCTTTC
TGTTCAGTACTACGTTTTTCCAATCTCTCCTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022843.1\|WP_172421225.1\|2559416_2561603_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_AP022843.1\|WP_172419622.1\|2562638_2564018_-\|IS1380-family-transposase	unknown	unknown	gnl\|CDD\|379340
NZ_AP022843.1\|WP_172421222.1\|2553953_2554970_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022843.1\|WP_146945363.1\|2571393_2572275_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213187
NZ_AP022843.1\|WP_172421226.1\|2561599_2562283_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022843.1\|WP_172421220.1\|2549092_2550055_-\|sulfotransferase-family-2-domain-containing-protein	unknown	unknown	unknown
NZ_AP022843.1\|WP_172421224.1\|2557498_2558776_-\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185104
NZ_AP022843.1\|WP_172421218.1\|2546402_2548130_+\|anion-permease	unknown	unknown	gnl\|CDD\|238535
NZ_AP022843.1\|WP_172421229.1\|2566448_2566994_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_AP022843.1\|WP_172421219.1\|2548173_2548650_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349783
NZ_AP022843.1\|WP_172421227.1\|2564096_2564804_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022843.1\|WP_172421231.1\|2568646_2569564_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NZ_AP022843.1\|WP_172421228.1\|2565084_2566407_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NZ_AP022843.1\|WP_172421221.1\|2551398_2552307_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022843.1\|WP_172421234.1\|2572893_2574315_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_AP022843.1\|WP_172421230.1\|2567076_2567973_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_AP022843.1\|WP_172421223.1\|2555042_2557481_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997
NZ_AP022843.1\|WP_172421233.1\|2572350_2572701_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NZ_AP022843.1\|WP_172422582.1\|2550264_2551053_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NZ_AP022843.1\|WP_172421232.1\|2570220_2571345_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013

Protein	Function_ID	Function_description	E-value
NZ_AP022843.1\|WP_172421225.1\|2559416_2561603_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.82604e-19
NZ_AP022843.1\|WP_172419622.1\|2562638_2564018_-\|IS1380-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	5.0622e-79
NZ_AP022843.1\|WP_172421229.1\|2566448_2566994_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.43354e-103
NZ_AP022843.1\|WP_172421224.1\|2557498_2558776_-\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185104	PRK15182, PRK15182, Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB.	5.46469e-173
NZ_AP022843.1\|WP_172421219.1\|2548173_2548650_-\|hypothetical-protein	gnl\|CDD\|349783	cd17874, FtsY, signal recognition particle receptor FtsY. FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.	0.00809424
NZ_AP022843.1\|WP_172421218.1\|2546402_2548130_+\|anion-permease	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	6.76885e-29
NZ_AP022843.1\|WP_172421228.1\|2565084_2566407_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_AP022843.1\|WP_172421231.1\|2568646_2569564_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	2.72956e-119
NZ_AP022843.1\|WP_172421230.1\|2567076_2567973_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_AP022843.1\|WP_172421234.1\|2572893_2574315_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	1.27665e-88
NZ_AP022843.1\|WP_146945363.1\|2571393_2572275_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.2203e-90
NZ_AP022843.1\|WP_172421223.1\|2555042_2557481_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	7.14133e-13
NZ_AP022843.1\|WP_172421233.1\|2572350_2572701_-\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	5.52358e-54
NZ_AP022843.1\|WP_172422582.1\|2550264_2551053_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.89698e-05
NZ_AP022843.1\|WP_172421232.1\|2570220_2571345_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0

>NZ_AP022843.1|WP_172421226.1|2561599_2562283_-|hypothetical-protein
MNEEKQLRIIQHKVKLEKENAVLLQQLHDTQEAYETLYTERKSLSNQLLTACTKSKQKLEKSTHDQLRLHQQLEKRQKELNILRADTQRHISHLESLVQWLRVHAQRHAAVAYRDSRSYKKELPKQLAMLEATPFFDADWYLAQYPDVAKSGIKPAEHFIKFGAIDGRHPSSQFSTDFYLTHYKDVAASGQHPLLHYLRHGIAEQRKTQPPQHHLPAPKKPTEGADA
>NZ_AP022843.1|WP_172421225.1|2559416_2561603_-|hypothetical-protein
MSQAADLLVHIGPLREESEALVKQANLAVLLASLSPVTAHHKALSQVLPALHIADQPITPPGGEAVCYAYTLKDFNSLAPASELTTLYPGLGKARHQSVDTQTLPQALEQAGLSQATFSHLIIEQPEISLSLLQAFNHSGLLDQLTHLWVRTSPLRLYEGMATDAELTQWCEQQGFELVAQNTTDPDFFLLGFTRSPLYHKLKETHAQLAERDTQLNQVKEEREKLEKELADSERNSKQSAQKAKQQLAEKLAEKDAQLAERDTQLSQLTEEREKLEKELADNERNSKQSAQKAKQQLAEKLAEKDAQLAERDTQLSQLTEERDTLKKQLNQALKVNQQQQKEHQETEQALKKVEQQYQDAVQAEQKAQEKLQETHTWFIHRKQQAEEGVEKIASLQEKLTHSEEEREKYQRYFANRKKQHEEAEAELVKAQQQLTEKDATISQLSEQLATLQQSNERFGQLESKLESLFGEQRSYIQQTTNALGQHVTRSARQQRDEQALMNYLQHGQRPISTTLAPGYAMALLEHYNANNHDVIVIFGSNGTTELLAQSVINARAEQPKLTRQKGQHHGQEHEVTLSHADLPQTIISITHQKVASDELKQCLNNKRLSHAVNVVHAPWIECQANGQTALFYAANTVLQRLNQWLPEDARVLAIIGETLAESGHSREAALTLLLQQLPTQRLDIVLEGNSYPLENDLKESWNTLLETRQRPAQWLTLPNTISLRVEG
>NZ_AP022843.1|WP_172421224.1|2557498_2558776_-|nucleotide-sugar-dehydrogenase
MQMENTKIAILGLGYVGLPLAVAFSKYFPTIGFDIKAGRIEELKKGKDNTREVSEAELAAAPNLTFSCNEEDLKAANVLIVTVPTPIDDHRQPDLTPLVKASEMLGRVINKGDVVIYESTVYPGATEEECIPVVEKVSGLVFNQDFFAGYSPERINPGDKERPVTKIMKVTSGSTPDVADFVDKLYGTIIEAGTHKASSIKVAEASKIIENTQRDVNIALVNELSMIFSLLGIDTNDVIEAAATKWNFIKLQPGLVGGHCIGVDPYYLVHKSMSVGHIPDMIRKAREINDGMARFVASKLIKAMIEKGQLIKGAKVLVMGMTFKENCPDIRNTKVIDLITELKSYGMQVDVYDPWVNHQNALEEYAVEMLDEPKSGNYDAILIAVGHNEFKKNEHKILSYGKESECTIFEIKKVMNCNNFKLHSL
>NZ_AP022843.1|WP_172421223.1|2555042_2557481_-|glycosyltransferase-family-2-protein
MLDLVNANSLFRNKKYSESIDFYNKYLNELGEEKRERFSVYFNLSEALAKRGNYVAARVAYIQGLLYHGKNIHSFIKPHWWSCKTESINSETVVILIPVFEAEDTLEEVVHSLYIQEYSDILIVAVNDNSQDSSINVLEKLGRKRSNFHVVDNVVNNGPFISANIALACLEPEDFGYFMKHDSDDILTPMRIIRQVKCLRDDKSKLFSTSGYSRIDKKSKEVVGGKKRGHNMTLYSKRVFDAIGYYDEVRFGADSEYLERALLKFGKASEAYIAERLTLAYLDPEKNIVSKNPLGSPIRVKYQSRFRSLHLKMKALNSWKYSQTFGEGLMLNEISKIGHEIVVCGIASLENRKKAIEDALASLLPQVDIVIVYQNGYKDRSGIFSNPKVLVISSLDTGVDMGDAGKFYKLSSFSNVYYFSCDDDLIYPCNYVSEMKSFLKKYDNKIIASCHGRVMVKKPISYYRDKKKVYHFANHVSEEAPVHFGGTGVMAFHTSFVNFNFNFFRTPNMADVWVGLYAQENKIPVMILPHHENWIKHSDKFDVETTIFRSGKDKEGQQDLLISGMEFCQPLNAASIKKSKNDFKIVVGIPTYNRHDFLKNILQRIDKEAKGYNVEVVVNDDGSEPPVSLSPSFKNIKVDLISSVNLGKKKYWETVNKIFNAMESKNADLYYYMADDLDIVDDFFDKSISSWMKIKDDEKLSLNLLNDGRDKCWTNYDRHMVCFNGFEVYQSQWLDMIMMFDHKLVKQRVDEIPLSRWKNRPNLSSGVGAQLSTKNHRAGFAMYQVKESLVRHGDHDSQMNFEERKLNPLLTK
>NZ_AP022843.1|WP_172421222.1|2553953_2554970_-|hypothetical-protein
MGKLIVHAGQMKSSTTYIQKILSKNRDLLSKKGFLYPGNSENHQILFYKICGSHIYWRNEKPNINHSGLSKLVEKINYEKESGRNIVLSAEGLSSMDEKGVDFLYEALGGFDSVVFTIRSLHKTLPSAWQQTLKSGSYSSLNDFFKKLERNRKNLEGYWRTYAFGNAAKIWGGYADVRAALLPNETSSDSYSWELFCQSVGLNLNEKVSLPIDKVNSSISQNTARLMRAVSLLADSEGLNKRDVARWFYNDFVLGSKVKGDKIFPPVEFKEVLDSWNYEELALLKEHASILSGSFDIYSEFENYNGKWLDKDKSIGELTQYDSEMASHVVNFFKSKFK
>NZ_AP022843.1|WP_172421221.1|2551398_2552307_-|hypothetical-protein
MSKLDISQFQYPVVYCNHLKDFYRKIKNKSSSFSIKVSPVQRLDVEVTYKGTSDALVLLAGAKTKKRMKTPNFSGKLISKSIDKTTIRISDPVFYLNDDFKLGWYFGSEEFNLQKFLPVILNNIKGVLNISNYIFFGGSGGGCASLYFSSKFEGSTAIVFNPQTNIVFYPADGFKVIDKYASEAFGTTRGDLHKKIVVDLCKLYAGGNQKNKIIYMQNKTDSHSIRDCKPFVEAFGVEYPKTFFSGLISENFYLHLTDWSKGHQPPPRESLIYVLKKIVNDKVEFSEESLNSMFERAEFLGV
>NZ_AP022843.1|WP_172422582.1|2550264_2551053_-|class-I-SAM-dependent-methyltransferase
MFFKITNQQNKSLKSQFDEIYTQLESLSWLQRALAIQGALPPLRGWPVSPDFLLRVHNWIRKNKPRVIVETGSGASTLVIADALRQNGVGVLISLEHLKKYGDQTWQTLVDEHLTEWVDLRVGELVLWKNDHLNSKSTDKPSRWYPLDLNGINHIDLLIVDGPPGDTCQFARYPAVPALFDRLAVNAEVWMDDANREDEKAICKRWAELYDFDLEYISLEKGLARLTRLGMEPVQSFATSDFNSMHPEFSIGLDFTLPEERR
>NZ_AP022843.1|WP_172421220.1|2549092_2550055_-|sulfotransferase-family-2-domain-containing-protein
MPFFFLHIPKTAGTSFRLGAEAYFSKERIVYDYGTNSKTTSPLVKESLHVDQPDFWQFKKAFLANNPAMICGHVPVARFVSLIGVGRTITFLREPLQRIASEYGHFVRNMDYKGSFKEFYASPAMINRQRRALNGVNSEAVGFLGLTERYTESLEILNGGFATDIAERKDNLGKRIPLAEHKLDQDDIDELTRLNKRDIMLYKHACALFDARYAMFKSNQPWAHARLVEANTKRISGWAWWANGSDEPVDIELWVKGEHATTLSAVEMRKELCRLLPPRGGYVGFHLPVKLLPGDTVQCRVAATGQWFPLKPQRVTEPAS
>NZ_AP022843.1|WP_172421219.1|2548173_2548650_-|hypothetical-protein
MDRTGVWQHTLLMGNASLATTLGRLHRDKGQGFVTVMADDDRASQHLEMQLASEGLGLWAQSLSLRGSVDSDASARAVTEHALSGLKGISLLVIDTADFSDEYLEALLSKLLPILLPRLAPTAQVWLADTMNVSLKALCQQWAKRHGFKVAELASRCG
>NZ_AP022843.1|WP_172421218.1|2546402_2548130_+|anion-permease
MTPWAVLLSIAVLLILLISGKVKPAIAFVSLAGLFLLCGFVDTSTLLMQYTNPALATLLLLLLVSLALERSPLLDWLSRHLLKGHPRLATARLMGSTAVLSAFLNNTAVVAAFLGAISRQQRIAPSRLLIPLSYASILGGITTLVGTSTNLVVNSFNLSASGNELGMFQFSLVGVPVALITLCILLWRANALPHHRLEDTDEKLSYFLAADVEADSPMIGKSIEENGLRSLNGLYLLEIERQGRLISPVAPNERLQAADTLVFTGEVSKVQALQRFPGLNLFGHQADNLLATNLVEVVISHESELSSKTLQDVDFRSMFSAGVVGIRRGGKRLEGQLGKIPLRVGDCLLLAVSADFRQHRNIDRNFHLLSGSFTRPQLTRKESIMTLGGFAAVIALATANLLPLFHGLLLLLGGLLLLKVISLAELRRRFPFELWLIIGSALGIAQALENSGAAAVLAGGMQWMFSGYGIYAAFIGCYLLTLLLTETVTNNAAAALAFPIAWSTAQAFGADPLPFVMAVAYGASACFLIPFGYQTHLMVYSPGRYKVTDFFKIGLPVSITYSAAVLVITPIVFPF
>NZ_AP022843.1|WP_172419622.1|2562638_2564018_-|IS1380-family-transposase
MGESLSTWTPSCNGAVRVELSGQRTTSDSGALLLREALDNSGVIEALEDNLVDRRHPLRILHSLASQLRTLVLQRAMGWIDLSDTDTLRRDPLWQLACSDARGTTPLAQDRPSQATLSRLLSCLGRNDNIDAVHEGLLRLVVWRLTSLQNGERPKQLTLDIDGLPIEVHGHQGGSAFHGLYGARIYSPLVASLAETGDMVGGLLREGNAGPAENADTWIPHLVRRLNESTGAQVRVRIDAGFTDNATLEALEERDIEYLGRLRSHSGLQKLAAPHLKRPPGRPPEQPREWCHDLEYQAGSWSAPRRVVLVVQERPDDLLLHAFFLVTNLGKFDWPPEKVLALYRKRGSAEAHMGEVKSALDVHLSSTDRGASTVQDVMARNEVSLLLSLYAYQVLHGLRCLLERQTRQGWSLSRMREQVLKVAATLRLHARRITVHLGAAADKWWPTLLKGLPKLTALS
>NZ_AP022843.1|WP_172421227.1|2564096_2564804_-|hypothetical-protein
MPRVIYLGLQAFAHEPHQLLPAAENPLACESLVDISEADAQAPSSIYLLSTLNDEDVVKLRAWCKHDSERQVMIAWPQPSAWLAARLASGAVAEEALNDWLAQAKRLLALFRSARRQITLVGYSPGRTSKLIDAPLDLLTTATDKAIYQLAAAYLCGQSQALQDTYPYLVASSQECTDYQQTKGSVLLEDALAEYLFQKSQLIAADQAKQELEKENDLLLEQLHSVQPALFMRPT
>NZ_AP022843.1|WP_172421228.1|2565084_2566407_-|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MNITVFGTGYVGLVTGTCLAEAGHHVICVDVDEQKIARLNQGIIPIYEPGLEAMVRHNGEDGRLKFTTDAAQAVQFGTLQFIAVGTPADEDGSADLQYVLNVAETIAQHMNGYKVVIDKSTVPVGTAEKVRDTIAATLNRLGKDYAFDVCSNPEFLKEGAAIEDFTRGARIVVGTDSPHVEKLMRECYAPYNRNHEKMLFMDVRSAELTKYAANAMLATKISFMNEIANLAERLGADIEQVRQGIGSDPRIGYHFIYPGCGYGGSCFPKDVQALARTAGLAGYSAELLKAVESVNERQKQTLFTKLSNALDGQLRGKTIAVWGLAFKPNTDDMREAPSRVLMEALWEAGAQVRAFDPKAMEEAARIYGSREDLTLCKRMEDTVIDADALVICTEWQQFRAVDLTWLANQLKGGVVIDGRNLYNPKEAKAVNLRYISVGRA
>NZ_AP022843.1|WP_172421229.1|2566448_2566994_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MQYEKLAIPDVVLITPQVFGDERGFFMETFRQSEFEHHCGHYTFVQDNHSKSTHGILRGLHYQHQQPQGKLVRVTQGEVFDVAVDMRQSSPTYGQWVGATLSEQNKQMLWVPPGFAHGFYVTSETAEFQYKCTDYYAPGDEVSILWNDPQLAIQWPTQGQKPQLSAKDEQGLAFKAAPAFD
>NZ_AP022843.1|WP_172421230.1|2567076_2567973_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MSQSSQRKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPISVLMLAGIREILIISTPEDLPQYQNLLGTGEDFGISLKYAEQPSPDGLAQAFIIGEEFIGDSPVCLVLGDNIFHGQHFSDQLKRASSYTSGATVFGYLVKDPERFGVVEFDENSNAISIEEKPRKPKSAYAVTGLYFYDNDVVEIAKNVTPSERGELEITSVNNAYLKHGDLRVERLGRGFAWLDTGTHDSLLEASQYVQTIEHRQGLKIACLEEIAWQQQWISDERLAELAKPLAKTQYGQYLKRLLKTKGNK
>NZ_AP022843.1|WP_172421231.1|2568646_2569564_-|dTDP-4-dehydrorhamnose-reductase
MNIFITGGNGQVGFELQRQFDPFGTILAPTRQELDLTNAEAVNVYLEKHQPGLILNAAAYTAVDKAESEPEQAKRLNAKLPAQLADYAAMQGIPLVHYSTDYVYPGNGEKPWQEDSLTGPLSIYGQTKLEGDDAVVSSGAKHLIFRTSWVYAARGNNFMKTMLRLGREREALNIVSDQIGAPTPARLIAQITALACTNHHSPSTTHHSLFTINIPQGIYHLAPRGETSWHGFASEIFKTARGLGEELAIAPEGVAGISTAEYPTPAKRPLNSRMALSKLENSLGITMPTWQSQLVLTLKEHLDSF
>NZ_AP022843.1|WP_172421232.1|2570220_2571345_-|dTDP-glucose-4,6-dehydratase
MSKTFFITGGAGFIGSAVIRELIHNTDNHVVNVDKLTYAGNLESLESVADSERYIFVQADICDAPAMQQLFERHQPDVVMHLAAESHVDRSIDGPAAFIQTNVVGTSVLLEAARAYWKSLQQQEAAKAEAFRFHHISTDEVYGDLDGTDDLFTEETSYAPSSPYSASKASSDHLVRAWQRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGDGQQIRDWLYVEDHARALIKVATEGEIGETYNIGGHNEQTNLHVVETICEILDELVPCKVKGSSHDSPLTTHDSPLTTHDSHKQLITFVTDRPGHDVRYAIDAGKIERELGWAPEETFETGLRKTVQWYLANETWWKRVQDGSYQGQRLGSI
>NZ_AP022843.1|WP_146945363.1|2571393_2572275_-|ATP-binding-cassette-domain-containing-protein
MIEIKHLYKRYHNHHGSDWVLKDVNFTIPMGVSVGLIGANGAGKSTLLRLIAGMDTPERGEVIRHSRVSWPVGLSGGMQGNMTGRQNVKFVARVQGSNPEEVKRVIKFVEEFAEIGPAFDEPIRTYSSGMKSRISFGLSLAFDFDVYISDEATAVGDRAFKAKAKELFESKTGQASLIMVSHSEGILKDLCQAGVYLKKGSAFWYDDINDAIAAYHADVDKKQRQSELPSDVVGARKYLQACHADLKAAQEILADAKEQEDKEALAAAKNAVKEASSRAREARENLELRQSTR
>NZ_AP022843.1|WP_172421233.1|2572350_2572701_-|four-helix-bundle-protein
MRKHQELRVWQQSMDLVEQIYSITKTFPDDERYGLISQMRRCAVSVPSNIAEGAARGSTQEFIRFLYISQGSLSELETQILIANRLNYLSDISVNINSIQQISSQLGGLIKHLKSR
>NZ_AP022843.1|WP_172421234.1|2572893_2574315_-|MBL-fold-metallo-hydrolase
MLDIIHHGGATGVTGSCHQLILNGENSLLVDCGLFQGEDAAQDSFQQLQIEFDISTVKALIITHVHIDHVGRLPYLLAAGFKGPIICSIPSATLLPLVIEDALKIGFTRNAELIQRFQAQLESQIVSVAYGKWHSVVNGCEKGKQGITTRIKFKRAGHILGSSYVEVAHQYANGSKERIVFSGDLGAPYAPLLPAPKSPYGCDQLVLESTYGDRQHVGRRERRATLKTAIEQALANGGTVMVPAFSIGRTQELLYELEGIIYEAKRNAKNNQWQAIEIIVDSPLAARFTNVYRQLKPYWDKEAQRRLRSGRHPLNFENLYTVESHEAHEQTVQYLAKTGRPAVVIAASGMCAGGRIMNYLKAMLGDERHQVLFVGYQGAGTPGRAIQQYGPQGGWVEIDGQRIDIHAGITTISGYSAHADQKDLLNFVKRMRRWPHTIRLVHGEETAKNALKHELEALYQRKGKQVDVVNSEW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP022843_1	1.13\|240901\|32\|NZ_AP022843\|CRISPRCasFinder	240901-240932	32	MK448884	Streptococcus phage Javan246, complete genome	23050-23081	6	0.812
NZ_AP022843_1	1.1\|240169\|32\|NZ_AP022843\|CRISPRCasFinder	240169-240200	32	MN855911	Siphoviridae sp. isolate 429, complete genome	1680-1711	7	0.781
NZ_AP022843_1	1.1\|240169\|32\|NZ_AP022843\|CRISPRCasFinder	240169-240200	32	MN855838	Bacteriophage sp. isolate 124, complete genome	5535-5566	7	0.781
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	236215-236246	7	0.781
NZ_AP022843_1	1.28\|241817\|32\|NZ_AP022843\|CRISPRCasFinder	241817-241848	32	MK448711	Streptococcus phage Javan235, complete genome	25769-25800	7	0.781
NZ_AP022843_1	1.29\|241878\|32\|NZ_AP022843\|CRISPRCasFinder	241878-241909	32	LR596902	Roseburia phage Jekyll genome assembly, chromosome: 1	17135-17166	7	0.781
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	196549-196580	8	0.75
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	MH015258	Ruegeria phage vB_RpoS-V16, complete genome	39486-39517	8	0.75
NZ_AP022843_1	1.18\|241206\|32\|NZ_AP022843\|CRISPRCasFinder	241206-241237	32	MF285618	Serratia phage 2050HW, complete genome	239747-239778	8	0.75
NZ_AP022843_1	1.18\|241206\|32\|NZ_AP022843\|CRISPRCasFinder	241206-241237	32	NC_048792	Serratia phage Moabite, complete genome	31116-31147	8	0.75
NZ_AP022843_1	1.25\|241634\|32\|NZ_AP022843\|CRISPRCasFinder	241634-241665	32	NZ_CP025505	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvC, complete sequence	22517-22548	8	0.75
NZ_AP022843_1	1.27\|241756\|32\|NZ_AP022843\|CRISPRCasFinder	241756-241787	32	MK448711	Streptococcus phage Javan235, complete genome	25769-25800	8	0.75
NZ_AP022843_1	1.37\|242366\|32\|NZ_AP022843\|CRISPRCasFinder	242366-242397	32	NZ_CP031226	Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence	270740-270771	8	0.75
NZ_AP022843_1	1.42\|240168\|33\|NZ_AP022843\|CRT	240168-240200	33	MN855911	Siphoviridae sp. isolate 429, complete genome	1679-1711	8	0.758
NZ_AP022843_1	1.42\|240168\|33\|NZ_AP022843\|CRT	240168-240200	33	MN855838	Bacteriophage sp. isolate 124, complete genome	5535-5567	8	0.758
NZ_AP022843_1	1.50\|240656\|33\|NZ_AP022843\|CRT,PILER-CR	240656-240688	33	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	236215-236247	8	0.758
NZ_AP022843_1	1.59\|241205\|33\|NZ_AP022843\|CRT,PILER-CR	241205-241237	33	MF285618	Serratia phage 2050HW, complete genome	239747-239779	8	0.758
NZ_AP022843_1	1.59\|241205\|33\|NZ_AP022843\|CRT,PILER-CR	241205-241237	33	NC_048792	Serratia phage Moabite, complete genome	31116-31148	8	0.758
NZ_AP022843_1	1.69\|241816\|33\|NZ_AP022843\|CRT,PILER-CR	241816-241848	33	MK448711	Streptococcus phage Javan235, complete genome	25769-25801	8	0.758
NZ_AP022843_1	1.70\|241877\|33\|NZ_AP022843\|CRT,PILER-CR	241877-241909	33	LR596902	Roseburia phage Jekyll genome assembly, chromosome: 1	17135-17167	8	0.758
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	314304-314335	9	0.719
NZ_AP022843_1	1.32\|242061\|32\|NZ_AP022843\|CRISPRCasFinder	242061-242092	32	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	51029-51060	9	0.719
NZ_AP022843_1	1.35\|242244\|32\|NZ_AP022843\|CRISPRCasFinder	242244-242275	32	MN694485	Marine virus AFVG_250M19, complete genome	52138-52169	9	0.719
NZ_AP022843_1	1.41\|242610\|32\|NZ_AP022843\|CRISPRCasFinder	242610-242641	32	NZ_CP014688	Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence	77316-77347	9	0.719
NZ_AP022843_1	1.50\|240656\|33\|NZ_AP022843\|CRT,PILER-CR	240656-240688	33	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	196549-196581	9	0.727
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP025015	Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence	336652-336683	10	0.688
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP049735	Rhizobium leguminosarum strain A1 plasmid unnamed2, complete sequence	86848-86879	10	0.688
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	54140-54171	10	0.688
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP018231	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3	106403-106434	10	0.688
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP018231	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3	173207-173238	10	0.688
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP018234	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed6, complete sequence	129701-129732	10	0.688
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP018234	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed6, complete sequence	185236-185267	10	0.688
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	1111320-1111351	10	0.688
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	387422-387453	10	0.688
NZ_AP022843_1	1.9\|240657\|32\|NZ_AP022843\|CRISPRCasFinder	240657-240688	32	CP049735	Rhizobium leguminosarum strain A1 plasmid pRLa12, complete sequence	100739-100770	10	0.688
NZ_AP022843_1	1.23\|241512\|32\|NZ_AP022843\|CRISPRCasFinder	241512-241543	32	JN880423	Salisaeta icosahedral phage 1, complete genome	32384-32415	10	0.688
NZ_AP022843_1	1.41\|242610\|32\|NZ_AP022843\|CRISPRCasFinder	242610-242641	32	MK557849	Caudovirales GX15bay, complete genome	26193-26224	10	0.688
NZ_AP022843_1	1.76\|242243\|33\|NZ_AP022843\|CRT,PILER-CR	242243-242275	33	MN694485	Marine virus AFVG_250M19, complete genome	52138-52170	10	0.697
NZ_AP022843_1	1.82\|242609\|33\|NZ_AP022843\|CRT	242609-242641	33	MK557849	Caudovirales GX15bay, complete genome	26193-26225	10	0.697

1. spacer 1.13|240901|32|NZ_AP022843|CRISPRCasFinder matches to MK448884 (Streptococcus phage Javan246, complete genome) position: , mismatch: 6, identity: 0.812

---attgcgcaagaacaacaagccgctgagttaaa	CRISPR spacer
gaaattg---aggaacaaaaagcggctgagttaaa	Protospacer
   ****   *.****** **** ***********

2. spacer 1.1|240169|32|NZ_AP022843|CRISPRCasFinder matches to MN855911 (Siphoviridae sp. isolate 429, complete genome) position: , mismatch: 7, identity: 0.781

--taattattgccattatcctagcagacgatccc	CRISPR spacer
gctag--attgccactatcctagcagtcgatcaa	Protospacer
  **.  *******.*********** *****

3. spacer 1.1|240169|32|NZ_AP022843|CRISPRCasFinder matches to MN855838 (Bacteriophage sp. isolate 124, complete genome) position: , mismatch: 7, identity: 0.781

--taattattgccattatcctagcagacgatccc	CRISPR spacer
gctag--attgccactatcctagcagtcgatcaa	Protospacer
  **.  *******.*********** *****

4. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 7, identity: 0.781

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
gagcaaggcgtcaagcgcgtcgttgcgatcac	Protospacer
** *    *** ********** *********

5. spacer 1.28|241817|32|NZ_AP022843|CRISPRCasFinder matches to MK448711 (Streptococcus phage Javan235, complete genome) position: , mismatch: 7, identity: 0.781

agactagcacgcacagcagcctataaatctgc	CRISPR spacer
cgtttagcacgctcagcagccgataaattagc	Protospacer
 * .******** ******** ******. **

6. spacer 1.29|241878|32|NZ_AP022843|CRISPRCasFinder matches to LR596902 (Roseburia phage Jekyll genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

ataaagggatggtcatgcgatattacattatg	CRISPR spacer
agaaaggaatggtcatgcgatatttcacttgt	Protospacer
* *****.**************** **.*

7. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 8, identity: 0.75

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
gtggctatcgaaaagcgcgtcgatgagatcat	Protospacer
*   .* *** ************** *****.

8. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to MH015258 (Ruegeria phage vB_RpoS-V16, complete genome) position: , mismatch: 8, identity: 0.75

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
gaaaatgtcgtagagcgcgtcgatgcgctcct	Protospacer
**   * *****.************** ** .

9. spacer 1.18|241206|32|NZ_AP022843|CRISPRCasFinder matches to MF285618 (Serratia phage 2050HW, complete genome) position: , mismatch: 8, identity: 0.75

ggatagcttgtctcggtagataactttatcag	CRISPR spacer
acacagcgtgtctcggtagataacgttacaac	Protospacer
. *.*** **************** ***. *

10. spacer 1.18|241206|32|NZ_AP022843|CRISPRCasFinder matches to NC_048792 (Serratia phage Moabite, complete genome) position: , mismatch: 8, identity: 0.75

ggatagcttgtctcggtagataactttatcag	CRISPR spacer
acacagcgtgtctcggtagataacgttacaac	Protospacer
. *.*** **************** ***. *

11. spacer 1.25|241634|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP025505 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvC, complete sequence) position: , mismatch: 8, identity: 0.75

cataaacgctgacatgttcatccgtgcatttg---	CRISPR spacer
cataaaagctgaaatgttcatcca---actcgaca	Protospacer
****** ***** **********.   *.*.*

12. spacer 1.27|241756|32|NZ_AP022843|CRISPRCasFinder matches to MK448711 (Streptococcus phage Javan235, complete genome) position: , mismatch: 8, identity: 0.75

agactagcacgcacagcagcctataaagctgc	CRISPR spacer
cgtttagcacgctcagcagccgataaattagc	Protospacer
 * .******** ******** ***** . **

13. spacer 1.37|242366|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP031226 (Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence) position: , mismatch: 8, identity: 0.75

tttttagcatcagcggtgatgttggacgacac	CRISPR spacer
tatttagcagcagcggtgatgatggctgtatc	Protospacer
* ******* *********** *** .*   *

14. spacer 1.42|240168|33|NZ_AP022843|CRT matches to MN855911 (Siphoviridae sp. isolate 429, complete genome) position: , mismatch: 8, identity: 0.758

--ttaattattgccattatcctagcagacgatccc	CRISPR spacer
ggctag--attgccactatcctagcagtcgatcaa	Protospacer
  .**.  *******.*********** *****

15. spacer 1.42|240168|33|NZ_AP022843|CRT matches to MN855838 (Bacteriophage sp. isolate 124, complete genome) position: , mismatch: 8, identity: 0.758

--ttaattattgccattatcctagcagacgatccc	CRISPR spacer
ggctag--attgccactatcctagcagtcgatcaa	Protospacer
  .**.  *******.*********** *****

16. spacer 1.50|240656|33|NZ_AP022843|CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.758

tgatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ggagcaaggcgtcaagcgcgtcgttgcgatcac	Protospacer
 ** *    *** ********** *********

17. spacer 1.59|241205|33|NZ_AP022843|CRT,PILER-CR matches to MF285618 (Serratia phage 2050HW, complete genome) position: , mismatch: 8, identity: 0.758

tggatagcttgtctcggtagataactttatcag	CRISPR spacer
tacacagcgtgtctcggtagataacgttacaac	Protospacer
*. *.*** **************** ***. *

18. spacer 1.59|241205|33|NZ_AP022843|CRT,PILER-CR matches to NC_048792 (Serratia phage Moabite, complete genome) position: , mismatch: 8, identity: 0.758

tggatagcttgtctcggtagataactttatcag	CRISPR spacer
tacacagcgtgtctcggtagataacgttacaac	Protospacer
*. *.*** **************** ***. *

19. spacer 1.69|241816|33|NZ_AP022843|CRT,PILER-CR matches to MK448711 (Streptococcus phage Javan235, complete genome) position: , mismatch: 8, identity: 0.758

cagactagcacgcacagcagcctataaatctgc	CRISPR spacer
acgtttagcacgctcagcagccgataaattagc	Protospacer
  * .******** ******** ******. **

20. spacer 1.70|241877|33|NZ_AP022843|CRT,PILER-CR matches to LR596902 (Roseburia phage Jekyll genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.758

tataaagggatggtcatgcgatattacattatg	CRISPR spacer
gagaaaggaatggtcatgcgatatttcacttgt	Protospacer
 * *****.**************** **.*

21. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP053022 (Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence) position: , mismatch: 9, identity: 0.719

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ggcattatcgcaaagcgcgtcgatgcgcccta	Protospacer
*.. ** ***.**************** .*

22. spacer 1.32|242061|32|NZ_AP022843|CRISPRCasFinder matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 9, identity: 0.719

agctgatgttatttgcgatgtgccgtgacggc	CRISPR spacer
cacgtgtattctttgcgatgagccgtgacggt	Protospacer
 .*  .*.** ********* **********.

23. spacer 1.35|242244|32|NZ_AP022843|CRISPRCasFinder matches to MN694485 (Marine virus AFVG_250M19, complete genome) position: , mismatch: 9, identity: 0.719

aaaactacgcaaagcacaagaagacctcttac	CRISPR spacer
aaaactacgcaaagtaaaagaagaatttgatt	Protospacer
**************.* ******* .*.   .

24. spacer 1.41|242610|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP014688 (Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence) position: , mismatch: 9, identity: 0.719

caaatcgcgcactcatcctggcttgccgccag	CRISPR spacer
gccggcgcgcactcatcctgcattgccggccg	Protospacer
   . ***************  ****** * *

25. spacer 1.50|240656|33|NZ_AP022843|CRT,PILER-CR matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 9, identity: 0.727

tgatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
cgtggctatcgaaaagcgcgtcgatgagatcat	Protospacer
.*   .* *** ************** *****.

26. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP025015 (Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

27. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP049735 (Rhizobium leguminosarum strain A1 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

28. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

29. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP018231 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

30. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP018231 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

31. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP018234 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

32. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP018234 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

33. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

34. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

35. spacer 1.9|240657|32|NZ_AP022843|CRISPRCasFinder matches to CP049735 (Rhizobium leguminosarum strain A1 plasmid pRLa12, complete sequence) position: , mismatch: 10, identity: 0.688

gatcttctcgtaaagcgcgtcgatgcgatcac	CRISPR spacer
ctcgatgtcgtaaagcgctccgatgcgatcga	Protospacer
  .  * *********** .**********.

36. spacer 1.23|241512|32|NZ_AP022843|CRISPRCasFinder matches to JN880423 (Salisaeta icosahedral phage 1, complete genome) position: , mismatch: 10, identity: 0.688

actacgacgacttaagcgaagaaaccggtgag	CRISPR spacer
ggggcgacgccttcagcgaagaaaccgcccgg	Protospacer
.  .***** *** ************* . .*

37. spacer 1.41|242610|32|NZ_AP022843|CRISPRCasFinder matches to MK557849 (Caudovirales GX15bay, complete genome) position: , mismatch: 10, identity: 0.688

caaatcgcgcactcatcctggcttgccgccag	CRISPR spacer
gccttcgcgcactcgccctggcttgccgaaca	Protospacer
    **********..************   .

38. spacer 1.76|242243|33|NZ_AP022843|CRT,PILER-CR matches to MN694485 (Marine virus AFVG_250M19, complete genome) position: , mismatch: 10, identity: 0.697

caaaactacgcaaagcacaagaagacctcttac	CRISPR spacer
aaaaactacgcaaagtaaaagaagaatttgatt	Protospacer
 **************.* ******* .*.   .

39. spacer 1.82|242609|33|NZ_AP022843|CRT matches to MK557849 (Caudovirales GX15bay, complete genome) position: , mismatch: 10, identity: 0.697

ccaaatcgcgcactcatcctggcttgccgccag	CRISPR spacer
cgccttcgcgcactcgccctggcttgccgaaca	Protospacer
*    **********..************   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

670831 : 721700

Halomonas_phage(29.27%)

integrase,terminase,capsid,head,protease,portal,tRNA,tail

attL 685182:685196|attR 700463:700477

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172419949.1\|670831_672127_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_172419950.1\|672212_673328_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_172419951.1\|673336_674335_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_172419952.1\|674374_675109_-	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_125745623.1\|675355_676540_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_172419953.1\|676625_677051_-	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.3e-20	41.7
WP_125745625.1\|677216_677543_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7N5	Lake_Baikal_phage	6.9e-17	39.3
WP_172419954.1\|677599_678766_-	aminotransferase class V-fold PLP-dependent enzyme	A0A142BZP5	Faustovirus	4.6e-31	28.9
WP_038481467.1\|678797_679265_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_172419955.1\|679341_680271_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_172419956.1\|680430_681177_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_172419957.1\|681319_682114_+	inositol monophosphatase	NA	NA	NA	NA
WP_172419958.1\|682229_683156_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	5.1e-41	38.8
WP_172419959.1\|683234_685088_-	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	6.7e-08	23.1
685182:685196	attL	NA	NA	NA	NA
WP_009722127.1\|685223_685550_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.3e-11	38.0
WP_172419960.1\|685621_686758_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.4e-88	45.7
WP_172419961.1\|686804_687836_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_172419962.1\|688100_688958_-\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	8.4e-14	28.3
WP_172419963.1\|688990_689317_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_172419964.1\|689318_689831_-	hypothetical protein	A0A1J0GUW8	Halomonas_phage	7.4e-34	42.0
WP_172419965.1\|691275_691863_-	hypothetical protein	Q5QF30	Pseudomonas_virus	1.3e-37	47.4
WP_172419966.1\|691855_692146_-	hypothetical protein	NA	NA	NA	NA
WP_172419967.1\|692142_693075_-	recombination-associated protein RdgC	A0A1J0GUV6	Halomonas_phage	3.2e-107	68.2
WP_172419968.1\|693076_693319_-	hypothetical protein	NA	NA	NA	NA
WP_172419969.1\|693401_693719_-	hypothetical protein	A0A2H4J2C6	uncultured_Caudovirales_phage	3.0e-09	39.4
WP_172419970.1\|693729_694050_-	hypothetical protein	A0A1J0GUV9	Halomonas_phage	1.9e-11	45.1
WP_172419971.1\|694046_694334_-	hypothetical protein	NA	NA	NA	NA
WP_172419972.1\|694330_694645_-	hypothetical protein	NA	NA	NA	NA
WP_172419973.1\|694641_695073_-	hypothetical protein	NA	NA	NA	NA
WP_172419974.1\|695237_695915_-	hypothetical protein	U5P0T5	Shigella_phage	5.4e-32	50.0
WP_172419975.1\|696026_696281_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_172419976.1\|696312_696678_+	HNH endonuclease	H6WG01	Cyanophage	1.6e-06	42.2
WP_172419977.1\|696674_697697_+	hypothetical protein	A0A067ZIA1	Vibrio_phage	2.5e-33	63.8
WP_172419978.1\|697687_698419_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	3.7e-34	47.5
WP_172419979.1\|698421_698748_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_172419980.1\|698731_699004_+	hypothetical protein	NA	NA	NA	NA
WP_172419981.1\|698990_699269_+	hypothetical protein	NA	NA	NA	NA
WP_172419982.1\|699621_699933_+	hypothetical protein	NA	NA	NA	NA
WP_172419983.1\|699929_700190_+	hypothetical protein	A0A1J0GUZ5	Halomonas_phage	1.0e-31	72.1
WP_172419984.1\|700186_700705_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	2.7e-23	46.2
700463:700477	attR	NA	NA	NA	NA
WP_172419985.1\|700785_701400_+	hypothetical protein	A0A1J0GV17	Halomonas_phage	1.1e-28	42.0
WP_172419986.1\|701409_702342_-	hypothetical protein	NA	NA	NA	NA
WP_172419987.1\|702363_702555_-	hypothetical protein	NA	NA	NA	NA
WP_172419988.1\|702938_703421_+	N-acetylmuramoyl-L-alanine amidase	A0A2K9VHF1	Pseudomonas_phage	2.8e-35	51.2
WP_172419989.1\|703453_703771_+	hypothetical protein	NA	NA	NA	NA
WP_172419990.1\|703767_704349_+	hypothetical protein	NA	NA	NA	NA
WP_172419991.1\|704345_704522_+	hypothetical protein	NA	NA	NA	NA
WP_172419992.1\|704521_704884_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	2.3e-21	45.8
WP_172419993.1\|704991_705453_+\|terminase	P27 family phage terminase small subunit	A0A1J0GV10	Halomonas_phage	6.9e-31	56.8
WP_172419994.1\|705456_707169_+\|terminase	terminase large subunit	A0A1J0GUY5	Halomonas_phage	1.5e-280	81.3
WP_172419995.1\|707165_708383_+\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.7e-159	66.2
WP_172419996.1\|708360_708498_+	hypothetical protein	NA	NA	NA	NA
WP_172419997.1\|708494_709169_+\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	6.1e-84	72.3
WP_172419998.1\|709158_710361_+\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	1.2e-143	63.5
WP_172419999.1\|710440_710761_+	hypothetical protein	A0A2D1GNQ9	Pseudomonas_phage	3.1e-06	59.6
WP_172420000.1\|710782_711109_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	4.0e-09	35.1
WP_172420001.1\|711115_711454_+\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	1.6e-32	58.9
WP_172420002.1\|711443_711947_+	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	1.9e-26	39.8
WP_172420003.1\|711950_712313_+	DUF3168 domain-containing protein	A0A1J0GUW9	Halomonas_phage	2.1e-30	53.4
WP_172420004.1\|712337_712823_+\|tail	phage tail protein	A0A1J0GUZ2	Halomonas_phage	2.2e-43	54.4
WP_172420005.1\|712819_713284_+\|tail	phage tail assembly chaperone family protein, TAC	Q9MCA4	Pseudomonas_phage	3.1e-23	51.3
WP_172422506.1\|713217_713472_+	hypothetical protein	A0A1J0GUY0	Halomonas_phage	9.7e-19	48.2
WP_172420006.1\|713640_714132_+	hypothetical protein	H6WRU8	Salmonella_phage	9.7e-23	50.0
WP_172420007.1\|714455_715391_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	8.3e-31	72.2
WP_172420008.1\|715520_715931_+	hypothetical protein	A0A0S2SY43	Pseudomonas_phage	1.3e-12	36.6
WP_172420009.1\|715992_718554_+	hypothetical protein	A0A1J0GUY9	Halomonas_phage	4.0e-35	33.3
WP_172420010.1\|718553_719048_+	hypothetical protein	NA	NA	NA	NA
WP_172420011.1\|719106_721206_+	hypothetical protein	A0A0U4B0B2	Pseudomonas_phage	5.3e-09	51.6
WP_172420012.1\|721202_721700_+	DUF1833 family protein	A0A2H4J983	uncultured_Caudovirales_phage	3.7e-30	44.4

DBSCAN-SWA_2

1134976 : 1199001

Pseudomonas_phage(21.43%)

integrase,tRNA,protease,transposase

attL 1176167:1176191|attR 1199160:1199184

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125753484.1\|1134976_1135300_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.0e-12	44.4
WP_172420273.1\|1135438_1137715_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.2e-169	43.0
WP_007111068.1\|1137906_1138125_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_172420274.1\|1138264_1138999_-	arginyltransferase	NA	NA	NA	NA
WP_172420275.1\|1139077_1139830_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_172420276.1\|1139948_1143446_+	DNA translocase FtsK 4TM domain-containing protein	G1DAY1	Mycobacterium_virus	6.6e-89	50.4
WP_172420277.1\|1143614_1144268_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_172420278.1\|1144332_1145667_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.6e-64	37.0
WP_172420279.1\|1145921_1146467_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_172420280.1\|1146579_1147377_+	glutamate racemase	NA	NA	NA	NA
WP_172420281.1\|1147434_1148550_+\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	A0A2K5B251	Erysipelothrix_phage	2.4e-13	28.7
WP_172420282.1\|1148745_1153569_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_172420283.1\|1153841_1154855_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_125746591.1\|1154927_1155137_-	ribosome modulation factor	NA	NA	NA	NA
WP_172420284.1\|1155479_1157702_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_172420285.1\|1157721_1158057_+	glutaredoxin family protein	NA	NA	NA	NA
WP_030070186.1\|1158142_1158424_-	WGR domain-containing protein	NA	NA	NA	NA
WP_172420286.1\|1158508_1159684_+	4-phosphoerythronate dehydrogenase PdxB	NA	NA	NA	NA
WP_172420287.1\|1159779_1160685_-\|protease	protease HtpX	NA	NA	NA	NA
WP_172420288.1\|1160793_1162041_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_172420289.1\|1162096_1163050_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_172420290.1\|1163169_1163568_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_172420291.1\|1164853_1165816_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-19	29.1
WP_172420292.1\|1165812_1166586_+	ABC transporter permease	NA	NA	NA	NA
WP_172420293.1\|1166686_1167520_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A1S5R3L8	Pseudomonas_phage	1.9e-34	34.1
WP_125746608.1\|1167567_1168128_+	nitroreductase family protein	NA	NA	NA	NA
WP_172420294.1\|1168133_1168652_+	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_172420295.1\|1168984_1169335_+	hypothetical protein	NA	NA	NA	NA
WP_172420296.1\|1170143_1170713_-	hypothetical protein	NA	NA	NA	NA
WP_172420297.1\|1170709_1171831_-	hypothetical protein	NA	NA	NA	NA
WP_172420298.1\|1171827_1173450_-	hypothetical protein	A0A1B0Z1F4	Shewanella_phage	8.9e-49	32.3
WP_172420299.1\|1173446_1173671_-	hypothetical protein	NA	NA	NA	NA
WP_172420300.1\|1173667_1173859_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_172420301.1\|1173947_1174790_-	hypothetical protein	NA	NA	NA	NA
WP_172420302.1\|1174786_1176022_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	1.1e-91	47.8
1176167:1176191	attL	NA	NA	NA	NA
WP_172420303.1\|1176349_1176502_+	hypothetical protein	NA	NA	NA	NA
WP_172420304.1\|1176615_1176837_-\|transposase	transposase	NA	NA	NA	NA
WP_172422525.1\|1177012_1178299_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_172420305.1\|1179076_1180114_+	threonine/serine dehydratase	NA	NA	NA	NA
WP_172420306.1\|1180552_1181905_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_172420307.1\|1182786_1184085_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_172420308.1\|1184362_1184791_-	RidA family protein	NA	NA	NA	NA
WP_172420309.1\|1184905_1185868_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA
WP_172420310.1\|1186075_1186705_-	PAS domain-containing protein	NA	NA	NA	NA
WP_172420311.1\|1186802_1187936_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA
WP_172420312.1\|1188073_1188400_+	asparaginase	NA	NA	NA	NA
WP_172420313.1\|1188445_1188667_+	hypothetical protein	NA	NA	NA	NA
WP_172420314.1\|1189319_1189691_+	RidA family protein	NA	NA	NA	NA
WP_172420315.1\|1190025_1190922_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_022519664.1\|1191384_1191654_-	hypothetical protein	NA	NA	NA	NA
WP_172420316.1\|1193323_1193614_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.3e-11	35.4
WP_022519766.1\|1193665_1193956_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_172420317.1\|1194174_1194312_-	hypothetical protein	NA	NA	NA	NA
WP_172420318.1\|1194323_1194935_-	YqaJ viral recombinase family protein	A0A1B0VMB3	Pseudomonas_phage	5.5e-76	69.3
WP_172422526.1\|1194993_1195677_-	ERF family protein	Q9MC70	Pseudomonas_phage	3.0e-62	58.6
WP_172420319.1\|1195768_1195954_-	hypothetical protein	NA	NA	NA	NA
WP_172420320.1\|1196070_1196676_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	1.8e-15	33.9
WP_172420321.1\|1197065_1197716_+	hypothetical protein	NA	NA	NA	NA
WP_172420322.1\|1197819_1199001_-\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	3.1e-99	48.2
1199160:1199184	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1748129 : 1755554

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172420691.1\|1748129_1749173_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-35	38.7
WP_172420692.1\|1749634_1750261_+	riboflavin synthase subunit alpha	A0A1V0SE20	Indivirus	1.5e-20	34.9
WP_172420693.1\|1750458_1751757_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	9.3e-73	40.6
WP_172420694.1\|1751791_1752337_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.3e-30	43.6
WP_125747484.1\|1752345_1752825_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_172420695.1\|1752826_1753510_+	uracil-DNA glycosylase	A0A0B4Q626	Equid_gammaherpesvirus	7.8e-47	47.1
WP_038483772.1\|1753607_1754237_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_172420696.1\|1754324_1755554_+	uracil-xanthine permease	Q9KX94	Enterobacteria_phage	1.6e-58	38.8

DBSCAN-SWA_4

2565084 : 2572275

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172421228.1\|2565084_2566407_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	7.2e-81	38.1
WP_172421229.1\|2566448_2566994_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.0e-52	54.6
WP_172421230.1\|2567076_2567973_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.1e-104	64.8
WP_172421231.1\|2568646_2569564_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	9.6e-24	33.6
WP_172421232.1\|2570220_2571345_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-95	49.9
WP_146945363.1\|2571393_2572275_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	6.0e-07	24.3

DBSCAN-SWA_5

3194084 : 3241199

Escherichia_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172422608.1\|3194084_3195254_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SLN2	Escherichia_phage	7.0e-128	59.9
WP_172421587.1\|3195309_3195738_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.7e-23	47.1
WP_172421831.1\|3196581_3197331_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_125751203.1\|3197508_3198933_+	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA
WP_038477934.1\|3198952_3199561_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA
WP_172421833.1\|3199564_3199786_+	cbb3-type cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_125751209.1\|3199782_3200712_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA
WP_172421835.1\|3200926_3202363_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA
WP_125751215.1\|3202370_3202895_+	FixH family protein	NA	NA	NA	NA
WP_172421837.1\|3202891_3205369_+	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.7e-78	30.4
WP_172421844.1\|3205365_3205584_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA
WP_172421846.1\|3205580_3206276_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_172421848.1\|3206404_3207832_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_125751227.1\|3207890_3208643_+	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
WP_172422609.1\|3208629_3209595_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.1e-108	71.5
WP_125753775.1\|3209661_3210312_-	DNA polymerase III subunit epsilon	NA	NA	NA	NA
WP_172421850.1\|3210317_3212135_-	cyclic nucleotide-binding/CBS domain-containing protein	NA	NA	NA	NA
WP_038477966.1\|3212730_3212991_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_172421852.1\|3212997_3214779_+	cation acetate symporter	NA	NA	NA	NA
WP_172421854.1\|3214884_3215415_+	hypothetical protein	NA	NA	NA	NA
WP_172421856.1\|3215510_3219458_+	PAS-domain containing protein	A0A2K9L5I4	Tupanvirus	3.6e-11	22.4
WP_125751244.1\|3219773_3220436_-	response regulator transcription factor	NA	NA	NA	NA
WP_125751247.1\|3220709_3222659_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.1e-88	38.9
WP_172421857.1\|3222827_3223376_-	SprT-like domain-containing protein	NA	NA	NA	NA
WP_172421858.1\|3223442_3223871_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.2e-24	47.8
WP_172421859.1\|3223926_3225096_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SLN2	Escherichia_phage	1.7e-126	59.4
WP_125751249.1\|3225223_3225898_+	YecA family protein	NA	NA	NA	NA
WP_172421860.1\|3225916_3227038_-	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein	NA	NA	NA	NA
WP_172421861.1\|3227065_3227785_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_172421862.1\|3227781_3228486_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	A0A0R6PI74	Moraxella_phage	9.0e-06	37.7
WP_125751262.1\|3228595_3229249_-	adenylate kinase	NA	NA	NA	NA
WP_172421863.1\|3229498_3231547_-	pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
WP_125747015.1\|3231605_3234278_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_172421864.1\|3234697_3235264_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	NA	NA	NA
WP_172421865.1\|3235347_3236202_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_172422610.1\|3236207_3236735_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_172421866.1\|3236880_3237609_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_035565795.1\|3237928_3239230_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_172421868.1\|3239302_3239731_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_035565795.1\|3239897_3241199_-\|transposase	IS1380 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022843

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection