CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP049078	Escherichia coli strain p11A plasmid p11A_p1, complete sequence	0 crisprs	DEDDh	0	0
NZ_CP049079	Escherichia coli strain p11A plasmid p11A_p2, complete sequence	0 crisprs	RT	0	2
NZ_CP049077	Escherichia coli strain p11A chromosome, complete genome	5 crisprs	c2c9_V-U4,csa3,cas3,DEDDh,RT,DinG,WYL	6	12

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46243 : 90265

Stx2-converting_phage(36.36%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298859.1\|46243_47785_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_000850424.1\|48402_49134_+	complement resistance protein TraT	NA	NA	NA	NA
WP_013362805.1\|51569_56690_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_023149624.1\|56709_57456_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	3.2e-09	30.5
WP_000139363.1\|57510_58071_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_005012601.1\|58204_58417_+	hypothetical protein	NA	NA	NA	NA
WP_077779935.1\|58717_58885_-	hypothetical protein	U5P0U6	Shigella_phage	7.8e-09	100.0
WP_001339397.1\|58861_59539_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|59538_59886_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_023149734.1\|59905_61477_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-169	58.5
WP_072142979.1\|62180_62414_+	hypothetical protein	NA	NA	NA	NA
WP_001312851.1\|62657_62807_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_000083833.1\|63090_63348_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_032336874.1\|63583_63658_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_000410951.1\|65417_66638_+	arginine deiminase	NA	NA	NA	NA
WP_000440183.1\|66648_67560_+	carbamate kinase	NA	NA	NA	NA
WP_000154545.1\|67644_68649_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000514417.1\|68696_70100_+	YfcC family protein	NA	NA	NA	NA
WP_001496175.1\|70180_70660_+	ArgR family transcriptional regulator	NA	NA	NA	NA
WP_000080227.1\|71016_71238_-	hypothetical protein	NA	NA	NA	NA
WP_000624725.1\|71268_71619_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_059330006.1\|71615_71978_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	9.0e-34	88.5
WP_032152936.1\|72816_73395_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_000005489.1\|73807_74161_-	hypothetical protein	NA	NA	NA	NA
WP_000156883.1\|74632_75655_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000083821.1\|76059_76317_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001365705.1\|76551_76626_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_032152935.1\|76618_77476_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_001333237.1\|78176_78317_+	hypothetical protein	NA	NA	NA	NA
WP_000616807.1\|78414_79068_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|79160_79418_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|79350_79752_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001553819.1\|79888_82786_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
WP_000509965.1\|82880_83486_+	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	9.4e-20	35.3
WP_001351729.1\|84262_84655_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|84792_85677_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|85708_86908_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|87013_87664_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_032140899.1\|87695_87938_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|89560_90265_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

93603 : 161556

Escherichia_phage(34.62%)

integrase,transposase

attL 89498:89557|attR 159059:159880

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
89498:89557	attL	NA	NA	NA	NA
WP_001389365.1\|93603_94368_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|94594_94900_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|94910_96116_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|96271_96475_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|96602_97442_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|97435_97783_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000503573.1\|97988_98777_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_001389366.1\|98907_99381_-	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000845048.1\|99538_100552_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067855.1\|100931_101636_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_165587319.1\|101581_102738_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	1.3e-17	30.6
WP_002063889.1\|102829_103372_-	AAA family ATPase	NA	NA	NA	NA
WP_001067855.1\|104352_105057_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001334766.1\|105688_106519_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_063840321.1\|106649_107204_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001067855.1\|107347_108052_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001216963.1\|108699_108807_-	protein YohO	NA	NA	NA	NA
WP_001240408.1\|108866_109598_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001295431.1\|109819_111505_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|111501_112221_+	two-component system response regulator BtsR	A0A2R2ZGH8	Clostridioides_phage	5.1e-12	25.1
WP_001295430.1\|112267_112738_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|112778_113240_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001296230.1\|113364_115368_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001294398.1\|116494_118774_-	hypothetical protein	NA	NA	NA	NA
WP_001296229.1\|118784_119873_-	MoxR family ATPase	NA	NA	NA	NA
WP_001067855.1\|127380_128085_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_050011420.1\|128075_128438_+\|transposase	IS1380 family transposase	A0A1B0VDR3	Salmonella_phage	3.8e-40	100.0
WP_000239590.1\|128693_129569_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001393253.1\|129615_129948_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_001067855.1\|131365_132070_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|133097_133802_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000888080.1\|134019_134358_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_002431133.1\|134387_134717_-	thioredoxin family protein	V9SJ74	Achromobacter_phage	1.3e-10	34.7
WP_000039982.1\|134930_136037_+	alkene reductase	NA	NA	NA	NA
WP_001194013.1\|136102_136804_+	DsbA family oxidoreductase	NA	NA	NA	NA
WP_032152933.1\|136869_137643_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_000872613.1\|137828_139052_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000090196.1\|139182_140055_-	DMT family transporter	NA	NA	NA	NA
WP_000734115.1\|140296_141049_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001336919.1\|142424_142994_+	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	6.4e-26	44.2
WP_001189123.1\|143559_145068_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
WP_001020413.1\|147333_148509_-	enterotoxin production-related protein TieB	NA	NA	NA	NA
WP_001100763.1\|148577_150839_-	TonB-dependent receptor	NA	NA	NA	NA
WP_000981091.1\|151007_151784_-	energy transducer TonB	NA	NA	NA	NA
WP_001224623.1\|151791_152667_-	hypothetical protein	NA	NA	NA	NA
WP_001080732.1\|155136_155472_-	colicin transporter	NA	NA	NA	NA
WP_000142452.1\|155600_155948_+	hypothetical protein	NA	NA	NA	NA
WP_000194541.1\|155967_156537_-	hypothetical protein	NA	NA	NA	NA
WP_000371882.1\|156533_156794_-	hypothetical protein	NA	NA	NA	NA
WP_165696595.1\|158047_158317_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	3.0e-42	100.0
WP_001067855.1\|158350_159055_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_024193849.1\|159079_159454_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.8e-60	100.0
WP_000255956.1\|160533_161556_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
159059:159880	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP049077

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049077_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049077_1

2502781-2502904

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049077_1

>merge|NZ_CP049077|1|2502781-2502904|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP049077|1|1|2502781-2502904|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049077.1\|WP_001296102.1\|2497629_2498268_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP049077.1\|WP_001296101.1\|2498331_2499000_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP049077.1\|WP_000098896.1\|2506784_2507933_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP049077.1\|WP_000848170.1\|2500609_2502214_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP049077.1\|WP_000528342.1\|2494202_2494412_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP049077.1\|WP_000212681.1\|2502339_2502645_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP049077.1\|WP_001174939.1\|2504515_2505889_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP049077.1\|WP_000102278.1\|2511800_2511890_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP049077.1\|WP_001273524.1\|2495514_2497617_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP049077.1\|WP_000534260.1\|2503218_2504475_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP049077.1\|WP_000701057.1\|2512055_2513225_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP049077.1\|WP_000007273.1\|2513370_2513952_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP049077.1\|WP_001070015.1\|2498996_2499782_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP049077.1\|WP_000493947.1\|2506103_2506745_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP049077.1\|WP_001070248.1\|2494867_2495494_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP049077.1\|WP_001182336.1\|2508223_2509435_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP049077.1\|WP_000190985.1\|2510476_2511502_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP049077.1\|WP_001295403.1\|2492233_2493646_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP049077.1\|WP_000269498.1\|2509547_2510480_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP049077.1\|WP_000587585.1\|2499785_2500598_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159

Protein	Function_ID	Function_description	E-value
NZ_CP049077.1\|WP_001296102.1\|2497629_2498268_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	5.79235e-121
NZ_CP049077.1\|WP_001296101.1\|2498331_2499000_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.44535e-77
NZ_CP049077.1\|WP_000098896.1\|2506784_2507933_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP049077.1\|WP_000848170.1\|2500609_2502214_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP049077.1\|WP_000528342.1\|2494202_2494412_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP049077.1\|WP_000212681.1\|2502339_2502645_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	7.08279e-64
NZ_CP049077.1\|WP_001174939.1\|2504515_2505889_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP049077.1\|WP_001273524.1\|2495514_2497617_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP049077.1\|WP_000534260.1\|2503218_2504475_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP049077.1\|WP_000701057.1\|2512055_2513225_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.86098e-98
NZ_CP049077.1\|WP_000007273.1\|2513370_2513952_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.68395e-137
NZ_CP049077.1\|WP_001070015.1\|2498996_2499782_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.53331e-162
NZ_CP049077.1\|WP_000493947.1\|2506103_2506745_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP049077.1\|WP_001070248.1\|2494867_2495494_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	4.70639e-138
NZ_CP049077.1\|WP_001182336.1\|2508223_2509435_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP049077.1\|WP_000190985.1\|2510476_2511502_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP049077.1\|WP_001295403.1\|2492233_2493646_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP049077.1\|WP_000269498.1\|2509547_2510480_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP049077.1\|WP_000587585.1\|2499785_2500598_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.89827e-172

>NZ_CP049077.1|WP_000212681.1|2502339_2502645_-|monooxygenase
MATLLQLHFSFNGPFGDTMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNVPLSQINQAKLA
>NZ_CP049077.1|WP_000848170.1|2500609_2502214_-|FAD-NAD(P)-binding-protein
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFDQADEAGIGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLNLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVTFHRDNANEKLNITLMSRTGILPEADFYCPIPYEPLHIITDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEENLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPNVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGITACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP049077.1|WP_000587585.1|2499785_2500598_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERLFCSQFVRSDDHARLGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGARARVAVTGNSSRISSAGDSGRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGCAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP049077.1|WP_001070015.1|2498996_2499782_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHSERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLDRAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP049077.1|WP_001296101.1|2498331_2499000_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGVCPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP049077.1|WP_001296102.1|2497629_2498268_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAKVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP049077.1|WP_001273524.1|2495514_2497617_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP049077.1|WP_001070248.1|2494867_2495494_+|ferredoxin-like-protein
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKESQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP049077.1|WP_000528342.1|2494202_2494412_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP049077.1|WP_001295403.1|2492233_2493646_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP049077.1|WP_000534260.1|2503218_2504475_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEACNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFGIGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP049077.1|WP_001174939.1|2504515_2505889_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP049077.1|WP_000493947.1|2506103_2506745_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP049077.1|WP_000098896.1|2506784_2507933_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP049077.1|WP_001182336.1|2508223_2509435_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP049077.1|WP_000269498.1|2509547_2510480_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALKLENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP049077.1|WP_000190985.1|2510476_2511502_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP049077.1|WP_000102278.1|2511800_2511890_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP049077.1|WP_000701057.1|2512055_2513225_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHVTPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAIVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP049077.1|WP_000007273.1|2513370_2513952_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKPLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP049077_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049077_2

3048674-3048787

Orphan

Consensus_repeat	Method
TTTTTTTACCTGATTCGGGTAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP049077_2

>merge|NZ_CP049077|2|3048674-3048787|PILER-CR
TTTACCTGATTCGGGTAAACGCCTTTACCTGATTTGGGTAAACTTTTTTTACCTGATTCAGGTAAATTTACCTCTTTCAGGTAAACTTTATTTTTCTTACCTGATTCGGGTAAT

>NZ_CP049077|2|1|3048674-3048787|PILER-CR
TTTACCTGATTCGGGTAAACGCC	TTTACCTGATTTGGGTAAACTTTT
TTTACCTGATTCAGGTAAATTTA	CCTCTTTCAGGTAAACTTTATTTTT
CTTACCTGATTCGGGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049077.1\|WP_000224914.1\|3038301_3038472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP049077.1\|WP_021533932.1\|3053852_3054134_+\|cell-division-protein-ZapA	unknown	unknown	unknown
NZ_CP049077.1\|WP_000548516.1\|3053650_3053842_+\|DUF1382-family-protein	unknown	unknown	gnl\|CDD\|369224
NZ_CP049077.1\|WP_001067458.1\|3049832_3050063_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP049077.1\|WP_000995418.1\|3051734_3052031_+\|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl\|CDD\|368728
NZ_CP049077.1\|WP_001053005.1\|3038471_3038927_-\|DNA-base-flipping-protein-YbcN	unknown	unknown	gnl\|CDD\|182057
NZ_CP049077.1\|WP_000774479.1\|3038018_3038309_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_CP049077.1\|WP_000080195.1\|3040432_3042046_-\|IS66-like-element-ISEc23-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP049077.1\|WP_000624722.1\|3042076_3042427_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP049077.1\|WP_000149537.1\|3053495_3053678_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP049077.1\|WP_000788794.1\|3047509_3048211_-\|replication-protein-P-of-bacteriophage	unknown	unknown	gnl\|CDD\|369163
NZ_CP049077.1\|WP_029700859.1\|3039374_3040406_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP049077.1\|WP_072147164.1\|3038923_3039025_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049077.1\|WP_001182900.1\|3049223_3049763_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
NZ_CP049077.1\|WP_022645049.1\|3042994_3047260_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP049077.1\|WP_000100847.1\|3052036_3052822_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP049077.1\|WP_000186848.1\|3052818_3053499_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP049077.1\|WP_000422741.1\|3042423_3042849_-\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|225511
NZ_CP049077.1\|WP_000233576.1\|3051452_3051659_+\|phage-encoded-cell-division-inhibitor-protein	unknown	unknown	gnl\|CDD\|236900
NZ_CP049077.1\|WP_000858975.1\|3050167_3050857_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484

Protein	Function_ID	Function_description	E-value
NZ_CP049077.1\|WP_000224914.1\|3038301_3038472_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.03602e-26
NZ_CP049077.1\|WP_000548516.1\|3053650_3053842_+\|DUF1382-family-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	1.05312e-21
NZ_CP049077.1\|WP_001067458.1\|3049832_3050063_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.89251e-22
NZ_CP049077.1\|WP_000995418.1\|3051734_3052031_+\|host-nuclease-inhibitor-protein-Gam	gnl\|CDD\|368728	pfam06064, Gam, Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	4.88161e-52
NZ_CP049077.1\|WP_000422741.1\|3042423_3042849_-\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.12473e-12
NZ_CP049077.1\|WP_000774479.1\|3038018_3038309_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	8.41611e-49
NZ_CP049077.1\|WP_000080195.1\|3040432_3042046_-\|IS66-like-element-ISEc23-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.48631e-112
NZ_CP049077.1\|WP_000624722.1\|3042076_3042427_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.13694e-49
NZ_CP049077.1\|WP_000149537.1\|3053495_3053678_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	6.23812e-34
NZ_CP049077.1\|WP_000788794.1\|3047509_3048211_-\|replication-protein-P-of-bacteriophage	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	1.10349e-80
NZ_CP049077.1\|WP_029700859.1\|3039374_3040406_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.80997e-30
NZ_CP049077.1\|WP_001182900.1\|3049223_3049763_-\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	4.83697e-38
NZ_CP049077.1\|WP_022645049.1\|3042994_3047260_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	2.77506e-127
NZ_CP049077.1\|WP_000100847.1\|3052036_3052822_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.45393e-64
NZ_CP049077.1\|WP_000186848.1\|3052818_3053499_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	3.63434e-29
NZ_CP049077.1\|WP_001053005.1\|3038471_3038927_-\|DNA-base-flipping-protein-YbcN	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.40549e-94
NZ_CP049077.1\|WP_000233576.1\|3051452_3051659_+\|phage-encoded-cell-division-inhibitor-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	6.0586e-14
NZ_CP049077.1\|WP_000858975.1\|3050167_3050857_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.28713e-28

>NZ_CP049077.1|WP_000788794.1|3047509_3048211_-|replication-protein-P-of-bacteriophage
MKNIAAQMINFDREQMRRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVSDGMRVARRQNRPFLPSPGQFVAWCREEASVTAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELACMTARINRGEAIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGAMK
>NZ_CP049077.1|WP_022645049.1|3042994_3047260_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MTTVNKKLKKTASGAITWSVIVTQILSPVSLSLIPANSFASSGNKDVTQIYASDEHANKVASFAASAGQSLANNNASSFAVNTLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLGIRHFTPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDYLERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKKHALKISLPESVQGEGESIIPVTLTINNASGGIKSVQWNDSAFTAAGGKISGNGTSWQITLPAYKSEGVNSWNVGATVQDNRGNVSNYAVMNISVTDSGVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLTAGSQAGTVRVTAKVQGKTFTLNIKQAAITDSDVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLAAGSQAGTVRVTAKVQGKTFTLNIKQAAITDSDVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLAAGSQAGTVRVTAKVQGKTFTLSIKQTATTEPDSEVSAVLTAAPAEQVVGYNINLQLAVKDSQGNAITGDNTLSFYALNQAEGVEFGTVTEKDGVYSATVTSKRAGKITIGVKSDSHDFSGVKKEITFIEDRQQVTFSQFEASQNNALADGKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGGEHAVSTDENGNAIFALISSTPGSYVITAHAGSQMSTELTVTFASNMTGASLSLTPESSSLISNIPANGKDAAVLDVQLTNTNASVNGQKIQLITSSEGLSVPTNIVTDSTGHVSVPLTTVKAGEYTVTARVTDGSHSVESGSVKLTFVPDVASAELNMSVSKQEIVADGSENATVNIQLVDANNNAFTGEVDLTITPSTGASLTSSNLQLDAHGQATTQFTASKSGQYTIQAEYVLDGKRITASQNIDAVTDVKGAVLEITSSASSAVVSDTNNLVFTLLLKSKSGEALSGRALNVKTSGPSKYGALVVDKTTVTTDENGQATVSVHGRTVGSYKLTATLNELGSDVSAVKSFSLYADDANGVLTLTKDPGYETNDGSPVGIYARFVDHFGNPLSGTVEFSAGSEDSPDSQRVKMEPATVTLHWTGNAASEFSTYESGYHWIKAKITNSKNTYEKTIRTYVVKLPEKDS
>NZ_CP049077.1|WP_000422741.1|3042423_3042849_-|IS66-family-insertion-sequence-hypothetical-protein
MELQDWRKEPRKNYSNEFKLRMVELASQPGACVAQIARENGVNDNVIFKWLRLWQNEGRVSRRLPVTTSSDTGVELLPVEITPDEQKEPVAAIAPSLSTSTQTRVSASSCKVEFRHGNMTLENPSPELLTVLIRELTGRGR
>NZ_CP049077.1|WP_000624722.1|3042076_3042427_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MISLPSGTRIWLVAGVTDMRKSFNGLGEQVQHVLNDNPFSGHLFIFRGRRGDTVKILWADADGLCLFTKRLEEGQFIWPAVRDGKVSITRSQLAMLLDKLDWRQPKTSSRNSLTML
>NZ_CP049077.1|WP_000080195.1|3040432_3042046_-|IS66-like-element-ISEc23-family-transposase
MSQKYLIRIAELERLLSEQAEALRQKDQQLSLVEETEAFLRSALTRAEEKIEEDEREIEHLRAQIEKLRRMLFGTRSEKLRREVELAEALLKQREQDSDRYSGREDDPQVPRQLRQSRHRRPLPAHLPREIHRLEPEESCCPECGGELDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTPVNDALYRYVMNTRKVHTDDTPVKVLAPGQKKAKTGRIWTYVRDDRNVGSSSPPAVWFAYSPNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACWAHARRKIHDVYISSKSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKVLLTSLHEWMVEKNGTLSKKSRLGEAFSYVLNQWDALCYYSDDGLAEADNNAAERALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWNVVLTNK
>NZ_CP049077.1|WP_029700859.1|3039374_3040406_+|alpha/beta-hydrolase
MKINKILSSATLLYGMSMAMSVGSCATPVQTNLPGYTPGADIISVSPTRNQVDLIGDVVYSQIKGTRSVRQLHMSVLVPRTNDLKPAIIYYPGGGFMSSEHDKFIEMRMALAEAGFVVAAVEYRTIPDTFPAPVEDGKAAIRYLREHASNYGIDPQRIGVLGDSAGGWLAQMMGTTNGDKTFDKGDFLQQSSDVQAVATLYGISDLLNIGEGFPESVQEVHRSPAVTEALMINGPAFRNFAGAPITASKEKALNASPIGHMKGVKPPFLIMHGSKDTLVSPEQSAKLFRMLKKNGDNAEYVLVEGAEHGDKTWYQPIIINRVVEWFTKNLGAPIKTAPQQQNP
>NZ_CP049077.1|WP_072147164.1|3038923_3039025_-|hypothetical-protein
MRTHNPNSLLPSQMQKCTCVFLHLASDLCGGEA
>NZ_CP049077.1|WP_001053005.1|3038471_3038927_-|DNA-base-flipping-protein-YbcN
MNLPQDGIKLHRGNFIAIGQQIQPYLENGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLISRGKSFATAAWVKDALKHTYLGYETKDLVDVVTGEITTIQSLRHTSDLDTGEMYVFLCKVEAWAVNIGCHLTIPQSCEFQLLRDKQEA
>NZ_CP049077.1|WP_000224914.1|3038301_3038472_-|hypothetical-protein
MATPLIRVMNGHIYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRNHG
>NZ_CP049077.1|WP_000774479.1|3038018_3038309_-|DUF1364-domain-containing-protein
MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLAGLCGTGIKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
>NZ_CP049077.1|WP_001182900.1|3049223_3049763_-|hypothetical-protein
MQPLTYQQTSGFSPTAVINRSQTKQVPGHEKIRDAVRAWSAVDNQDVVATLIVNEYLEQGGGTIDFPDDVSRARQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLEYRGYLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEISEGIVSMFRVDPDLAGPLMAMVTTMLGAI
>NZ_CP049077.1|WP_001067458.1|3049832_3050063_-|helix-turn-helix-domain-containing-protein
MNPAIKTAINIVGSQKKLGAACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIRPDLPKLFPHTEKNAA
>NZ_CP049077.1|WP_000858975.1|3050167_3050857_+|helix-turn-helix-transcriptional-regulator
MKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
>NZ_CP049077.1|WP_000233576.1|3051452_3051659_+|phage-encoded-cell-division-inhibitor-protein
MVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNH
>NZ_CP049077.1|WP_000995418.1|3051734_3052031_+|host-nuclease-inhibitor-protein-Gam
MNAYYIQDRLEAQSWARHYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRCGASKKAITRAFDDDVEFQERMAEHIRYMVETIAHHHVDIDSEV
>NZ_CP049077.1|WP_000100847.1|3052036_3052822_+|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
>NZ_CP049077.1|WP_000186848.1|3052818_3053499_+|YqaJ-viral-recombinase-family-protein
MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVVERDEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
>NZ_CP049077.1|WP_000149537.1|3053495_3053678_+|DUF1317-domain-containing-protein
MTHPHDNIRVGAITFVYSVTKRGWVFHGLSVIRNPLKAQRLAEEINNKRGAVCTKHLLLS
>NZ_CP049077.1|WP_000548516.1|3053650_3053842_+|DUF1382-family-protein
MHKASPVELRTSIDLAHSLAQIGVRFVPIPAETDEEFHTLATSLSQKLEMMVAKAEADERDQV
>NZ_CP049077.1|WP_021533932.1|3053852_3054134_+|cell-division-protein-ZapA
MHFSGSGLHILCAYACRHGACSVTPQQENALRSIARQANSEIKKVRQQFPDKNVNDICRSVLKKHRETVTLKGFTPTHLSLAIGMLNGVFKER

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Crispr_ID: NZ_CP049077_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049077_3

3181081-3181172

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049077_3

>merge|NZ_CP049077|3|3181081-3181172|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP049077|3|2|3181081-3181172|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049077.1\|WP_000420625.1\|3184253_3185174_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP049077.1\|WP_000209903.1\|3185733_3186333_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP049077.1\|WP_001001161.1\|3178522_3179113_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP049077.1\|WP_001230247.1\|3188875_3190048_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP049077.1\|WP_001044302.1\|3182477_3183719_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP049077.1\|WP_001151437.1\|3181595_3182192_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP049077.1\|WP_001143120.1\|3182212_3182440_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP049077.1\|WP_000979522.1\|3170331_3170541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049077.1\|WP_000024569.1\|3185173_3185479_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP049077.1\|WP_001295944.1\|3177712_3178513_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP049077.1\|WP_000191701.1\|3174597_3175236_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP049077.1\|WP_001295947.1\|3170595_3174558_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP049077.1\|WP_001295946.1\|3175523_3176615_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP049077.1\|WP_001120112.1\|3190177_3190870_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP049077.1\|WP_001028098.1\|3179123_3179618_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP049077.1\|WP_001264949.1\|3190842_3191871_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP049077.1\|WP_012896765.1\|3176614_3177307_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP049077.1\|WP_001295943.1\|3179638_3180967_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP049077.1\|WP_001063148.1\|3186329_3188876_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP049077.1\|WP_001126780.1\|3177318_3177705_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677

Protein	Function_ID	Function_description	E-value
NZ_CP049077.1\|WP_000420625.1\|3184253_3185174_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP049077.1\|WP_000209903.1\|3185733_3186333_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.77311e-84
NZ_CP049077.1\|WP_001001161.1\|3178522_3179113_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	6.42763e-128
NZ_CP049077.1\|WP_001230247.1\|3188875_3190048_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP049077.1\|WP_001044302.1\|3182477_3183719_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP049077.1\|WP_001151437.1\|3181595_3182192_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP049077.1\|WP_001143120.1\|3182212_3182440_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP049077.1\|WP_001120112.1\|3190177_3190870_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP049077.1\|WP_000024569.1\|3185173_3185479_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	7.6018e-65
NZ_CP049077.1\|WP_001295944.1\|3177712_3178513_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.24575e-139
NZ_CP049077.1\|WP_000191701.1\|3174597_3175236_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP049077.1\|WP_001295947.1\|3170595_3174558_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP049077.1\|WP_001295946.1\|3175523_3176615_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP049077.1\|WP_001028098.1\|3179123_3179618_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.8278e-106
NZ_CP049077.1\|WP_001264949.1\|3190842_3191871_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	6.52362e-177
NZ_CP049077.1\|WP_012896765.1\|3176614_3177307_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	6.11512e-169
NZ_CP049077.1\|WP_001295943.1\|3179638_3180967_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP049077.1\|WP_001063148.1\|3186329_3188876_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP049077.1\|WP_001126780.1\|3177318_3177705_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85

>NZ_CP049077.1|WP_001295943.1|3179638_3180967_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGITTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNSVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQKP
>NZ_CP049077.1|WP_001028098.1|3179123_3179618_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEKALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP049077.1|WP_001001161.1|3178522_3179113_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWREPPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSDLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP049077.1|WP_001295944.1|3177712_3178513_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLDQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINTHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP049077.1|WP_001126780.1|3177318_3177705_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP049077.1|WP_012896765.1|3176614_3177307_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSSTSFARIA
>NZ_CP049077.1|WP_001295946.1|3175523_3176615_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVANVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP049077.1|WP_000191701.1|3174597_3175236_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP049077.1|WP_001295947.1|3170595_3174558_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDNALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP049077.1|WP_000979522.1|3170331_3170541_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP049077.1|WP_001151437.1|3181595_3182192_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP049077.1|WP_001143120.1|3182212_3182440_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP049077.1|WP_001044302.1|3182477_3183719_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYKLLEQIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTERTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDRVLNEAVK
>NZ_CP049077.1|WP_000420625.1|3184253_3185174_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP049077.1|WP_000024569.1|3185173_3185479_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPSEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP049077.1|WP_000209903.1|3185733_3186333_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNGLENSIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLDLLSHLHFSLGEGTVPARRIDGLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDYQKR
>NZ_CP049077.1|WP_001063148.1|3186329_3188876_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFISPQDASARGIRHGDVVRVFNVRGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP049077.1|WP_001230247.1|3188875_3190048_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP049077.1|WP_001120112.1|3190177_3190870_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP049077.1|WP_001264949.1|3190842_3191871_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLSAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPHVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Crispr_ID: NZ_CP049077_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049077_4

3378524-3378606

Orphan

I-F

Consensus_repeat	Method
ATCTGCCTGTACGGCAGTGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049077_4

>merge|NZ_CP049077|4|3378524-3378606|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACTTGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTAAGCTGCCTGTACGGCAGTGAACT

>NZ_CP049077|4|3|3378524-3378606|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACT	TGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTA
AGCTGCCTGTACGGCAGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049077.1\|WP_000488716.1\|3388309_3389005_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP049077.1\|WP_012896759.1\|3385279_3386230_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP049077.1\|WP_000410785.1\|3381767_3381992_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP049077.1\|WP_001040187.1\|3377914_3378133_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP049077.1\|WP_000746478.1\|3384007_3385123_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP049077.1\|WP_000188152.1\|3382064_3384011_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP049077.1\|WP_000228473.1\|3371269_3371764_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP049077.1\|WP_000067797.1\|3364904_3366248_-\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP049077.1\|WP_001043561.1\|3373395_3375162_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP049077.1\|WP_000491137.1\|3389419_3390319_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP049077.1\|WP_000599803.1\|3386226_3387885_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP049077.1\|WP_001385255.1\|3372307_3373273_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP049077.1\|WP_000934041.1\|3378817_3381094_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP049077.1\|WP_000077041.1\|3367028_3371135_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP049077.1\|WP_000886683.1\|3363521_3364814_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP049077.1\|WP_001202204.1\|3375162_3376884_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP049077.1\|WP_001241674.1\|3376925_3377630_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP049077.1\|WP_001295343.1\|3366258_3366870_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP049077.1\|WP_000520781.1\|3381124_3381445_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP049077.1\|WP_000458841.1\|3390462_3392115_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391

Protein	Function_ID	Function_description	E-value
NZ_CP049077.1\|WP_000488716.1\|3388309_3389005_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP049077.1\|WP_012896759.1\|3385279_3386230_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.94357e-131
NZ_CP049077.1\|WP_000410785.1\|3381767_3381992_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP049077.1\|WP_001040187.1\|3377914_3378133_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP049077.1\|WP_000746478.1\|3384007_3385123_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP049077.1\|WP_000188152.1\|3382064_3384011_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP049077.1\|WP_000228473.1\|3371269_3371764_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP049077.1\|WP_000067797.1\|3364904_3366248_-\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP049077.1\|WP_001043561.1\|3373395_3375162_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP049077.1\|WP_000491137.1\|3389419_3390319_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
NZ_CP049077.1\|WP_000599803.1\|3386226_3387885_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP049077.1\|WP_001385255.1\|3372307_3373273_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP049077.1\|WP_000934041.1\|3378817_3381094_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP049077.1\|WP_000077041.1\|3367028_3371135_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP049077.1\|WP_000886683.1\|3363521_3364814_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP049077.1\|WP_001202204.1\|3375162_3376884_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP049077.1\|WP_001241674.1\|3376925_3377630_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
NZ_CP049077.1\|WP_001295343.1\|3366258_3366870_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP049077.1\|WP_000520781.1\|3381124_3381445_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP049077.1\|WP_000458841.1\|3390462_3392115_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0

>NZ_CP049077.1|WP_001040187.1|3377914_3378133_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP049077.1|WP_001241674.1|3376925_3377630_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP049077.1|WP_001202204.1|3375162_3376884_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP049077.1|WP_001043561.1|3373395_3375162_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP049077.1|WP_001385255.1|3372307_3373273_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP049077.1|WP_000228473.1|3371269_3371764_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP049077.1|WP_000077041.1|3367028_3371135_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP049077.1|WP_001295343.1|3366258_3366870_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP049077.1|WP_000067797.1|3364904_3366248_-|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP049077.1|WP_000886683.1|3363521_3364814_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP049077.1|WP_000934041.1|3378817_3381094_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP049077.1|WP_000520781.1|3381124_3381445_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP049077.1|WP_000410785.1|3381767_3381992_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP049077.1|WP_000188152.1|3382064_3384011_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP049077.1|WP_000746478.1|3384007_3385123_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP049077.1|WP_012896759.1|3385279_3386230_+|DUF535-domain-containing-protein
MSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP049077.1|WP_000599803.1|3386226_3387885_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP049077.1|WP_000488716.1|3388309_3389005_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP049077.1|WP_000491137.1|3389419_3390319_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP049077.1|WP_000458841.1|3390462_3392115_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP049077_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049077_5

4262622-4262754

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP049077_5

>merge|NZ_CP049077|5|4262622-4262754|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAG

>NZ_CP049077|5|2|4262622-4262754|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049077.1\|WP_001295757.1\|4274166_4275315_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP049077.1\|WP_001295758.1\|4269562_4270153_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP049077.1\|WP_000377106.1\|4255300_4257163_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP049077.1\|WP_001183209.1\|4257793_4259125_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP049077.1\|WP_059338318.1\|4263003_4264518_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP049077.1\|WP_000333124.1\|4270271_4270667_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP049077.1\|WP_000600725.1\|4257155_4257686_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP049077.1\|WP_000692217.1\|4261760_4262531_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP049077.1\|WP_001091513.1\|4260804_4261746_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP049077.1\|WP_000349970.1\|4265819_4267037_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP049077.1\|WP_000543585.1\|4275770_4276592_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP049077.1\|WP_000347117.1\|4264548_4265691_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP049077.1\|WP_000203744.1\|4259183_4259471_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP049077.1\|WP_000004399.1\|4268771_4269557_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP049077.1\|WP_001160964.1\|4254023_4254308_-\|CcdB-family-protein	unknown	unknown	gnl\|CDD\|376629
NZ_CP049077.1\|WP_000624375.1\|4254629_4255109_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP049077.1\|WP_001295759.1\|4267109_4268663_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP049077.1\|WP_001287712.1\|4259467_4260754_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP049077.1\|WP_000125566.1\|4254310_4254544_-\|antitoxin	unknown	unknown	gnl\|CDD\|227619
NZ_CP049077.1\|WP_001126342.1\|4270927_4274149_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393

Protein	Function_ID	Function_description	E-value
NZ_CP049077.1\|WP_001295757.1\|4274166_4275315_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP049077.1\|WP_001295758.1\|4269562_4270153_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.67383e-142
NZ_CP049077.1\|WP_000377106.1\|4255300_4257163_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP049077.1\|WP_001183209.1\|4257793_4259125_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.5672e-59
NZ_CP049077.1\|WP_059338318.1\|4263003_4264518_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP049077.1\|WP_000333124.1\|4270271_4270667_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.21297e-74
NZ_CP049077.1\|WP_000600725.1\|4257155_4257686_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP049077.1\|WP_000692217.1\|4261760_4262531_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	2.42827e-170
NZ_CP049077.1\|WP_001091513.1\|4260804_4261746_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP049077.1\|WP_000349970.1\|4265819_4267037_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP049077.1\|WP_000543585.1\|4275770_4276592_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.6349e-141
NZ_CP049077.1\|WP_000347117.1\|4264548_4265691_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP049077.1\|WP_000203744.1\|4259183_4259471_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.0161e-68
NZ_CP049077.1\|WP_000004399.1\|4268771_4269557_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	6.92249e-179
NZ_CP049077.1\|WP_001160964.1\|4254023_4254308_-\|CcdB-family-protein	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	1.5415e-33
NZ_CP049077.1\|WP_000624375.1\|4254629_4255109_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP049077.1\|WP_001295759.1\|4267109_4268663_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP049077.1\|WP_001287712.1\|4259467_4260754_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP049077.1\|WP_000125566.1\|4254310_4254544_-\|antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	2.77856e-23
NZ_CP049077.1\|WP_001126342.1\|4270927_4274149_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0

>NZ_CP049077.1|WP_000692217.1|4261760_4262531_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP049077.1|WP_001091513.1|4260804_4261746_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLSGKPDERMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLNAAVSNDASAVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP049077.1|WP_001287712.1|4259467_4260754_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFNGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP049077.1|WP_000203744.1|4259183_4259471_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKRDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP049077.1|WP_001183209.1|4257793_4259125_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFEEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWTLPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP049077.1|WP_000600725.1|4257155_4257686_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP049077.1|WP_000377106.1|4255300_4257163_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRRAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFVLSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP049077.1|WP_000624375.1|4254629_4255109_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP049077.1|WP_000125566.1|4254310_4254544_-|antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
>NZ_CP049077.1|WP_001160964.1|4254023_4254308_-|CcdB-family-protein
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFSRIRPPERLNPILLLIDGKEYVLMTHETATVPVNALGTKFCDASAHRTLIK
>NZ_CP049077.1|WP_059338318.1|4263003_4264518_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGGRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSVLVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKY
>NZ_CP049077.1|WP_000347117.1|4264548_4265691_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP049077.1|WP_000349970.1|4265819_4267037_+|L-carnitine-CoA-transferase
MDHLTMPKFGPLSGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIAECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP049077.1|WP_001295759.1|4267109_4268663_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDIYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSVRAFWGQVQKYRATVTECIPMMIRTLMVQPPSVNDRQHCLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP049077.1|WP_000004399.1|4268771_4269557_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP049077.1|WP_001295758.1|4269562_4270153_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVLAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP049077.1|WP_000333124.1|4270271_4270667_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP049077.1|WP_001126342.1|4270927_4274149_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP049077.1|WP_001295757.1|4274166_4275315_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGSWTLTGGLPEAKKEDELPYHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIALIEQYRKTAK
>NZ_CP049077.1|WP_000543585.1|4275770_4276592_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAIKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049077_2	2.1\|3048697\|24\|NZ_CP049077\|PILER-CR	3048697-3048720	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37675	0	1.0
NZ_CP049077_2	2.1\|3048697\|24\|NZ_CP049077\|PILER-CR	3048697-3048720	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37958	0	1.0
NZ_CP049077_2	2.2\|3048744\|25\|NZ_CP049077\|PILER-CR	3048744-3048768	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37628	0	1.0
NZ_CP049077_2	2.2\|3048744\|25\|NZ_CP049077\|PILER-CR	3048744-3048768	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37911	0	1.0
NZ_CP049077_2	2.1\|3048697\|24\|NZ_CP049077\|PILER-CR	3048697-3048720	24	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44595	1	0.958
NZ_CP049077_2	2.2\|3048744\|25\|NZ_CP049077\|PILER-CR	3048744-3048768	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44548	1	0.96
NZ_CP049077_5	5.1\|4262639\|42\|NZ_CP049077\|PILER-CR	4262639-4262680	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
NZ_CP049077_1	1.1\|2502824\|38\|NZ_CP049077\|CRISPRCasFinder	2502824-2502861	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP049077_3	3.1\|3181107\|40\|NZ_CP049077\|CRISPRCasFinder	3181107-3181146	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	2	0.95
NZ_CP049077_5	5.2\|4262698\|40\|NZ_CP049077\|PILER-CR	4262698-4262737	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	2	0.95
NZ_CP049077_2	2.2\|3048744\|25\|NZ_CP049077\|PILER-CR	3048744-3048768	25	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35685	4	0.84

1. spacer 2.1|3048697|24|NZ_CP049077|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

2. spacer 2.1|3048697|24|NZ_CP049077|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

3. spacer 2.2|3048744|25|NZ_CP049077|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

4. spacer 2.2|3048744|25|NZ_CP049077|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

5. spacer 2.1|3048697|24|NZ_CP049077|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.958

cgcctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.***********************

6. spacer 2.2|3048744|25|NZ_CP049077|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

7. spacer 5.1|4262639|42|NZ_CP049077|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

8. spacer 1.1|2502824|38|NZ_CP049077|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

9. spacer 3.1|3181107|40|NZ_CP049077|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 2, identity: 0.95

gcgctgcgggtcatttttgaaattacctccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.***********.************

10. spacer 5.2|4262698|40|NZ_CP049077|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

catggcgtagcaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *********************.*******

11. spacer 2.2|3048744|25|NZ_CP049077|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

824327 : 879903

Stx2-converting_phage(38.46%)

transposase,integrase,protease

attL 877889:877903|attR 886481:886495

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422741.1\|824327_824753_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|824749_825100_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000080195.1\|825130_826744_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000997995.1\|826902_828441_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-281	93.9
WP_000624646.1\|829568_829919_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.4e-36	62.1
WP_000435655.1\|829915_830341_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	3.6e-34	74.2
WP_085949591.1\|830712_830850_-	hypothetical protein	NA	NA	NA	NA
WP_001149834.1\|831001_831919_+	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_000629094.1\|831952_832828_+	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_000376547.1\|832876_834349_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-06	22.7
WP_000948500.1\|834352_835183_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001296386.1\|835228_835939_+	N-acetylneuraminic acid channel protein	NA	NA	NA	NA
WP_000865295.1\|835951_837061_+	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_001030790.1\|837122_838046_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001282578.1\|838081_838816_-	transcriptional regulator NanR	NA	NA	NA	NA
WP_000274668.1\|838915_839902_+	hypothetical protein	Q08JA2	Stx2-converting_phage	4.0e-108	57.7
WP_096928816.1\|840053_841281_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	7.2e-168	94.4
WP_001223344.1\|841781_843872_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_001296383.1\|844733_844976_+	hypothetical protein	NA	NA	NA	NA
WP_001296382.1\|845266_845626_+	hypothetical protein	NA	NA	NA	NA
WP_000266542.1\|845629_845845_+	hypothetical protein	NA	NA	NA	NA
WP_001254932.1\|850625_851777_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_001034083.1\|852373_856261_-\|protease	serine protease autotransporter toxin Sat	Q9LA58	Enterobacterial_phage	1.2e-227	39.0
WP_011076574.1\|856510_856654_+	hypothetical protein	NA	NA	NA	NA
WP_000973516.1\|857204_859406_-	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_000750130.1\|859487_860765_-	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_001015715.1\|860761_862504_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_001287500.1\|862503_863451_-	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001296374.1\|863451_865176_-	aerobactin synthase IucA	NA	NA	NA	NA
WP_000074472.1\|865311_866505_+	MFS transporter	NA	NA	NA	NA
WP_001296373.1\|867222_867651_-	DUF417 family protein	NA	NA	NA	NA
WP_000109147.1\|867690_868251_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001110186.1\|868292_868553_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001513409.1\|870386_870500_+	hypothetical protein	NA	NA	NA	NA
WP_000006213.1\|872367_872601_-	Major pilus subunit operon regulatory protein	NA	NA	NA	NA
WP_000147017.1\|877338_878382_-	hypothetical protein	NA	NA	NA	NA
877889:877903	attL	NA	NA	NA	NA
WP_001218869.1\|878637_879903_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
WP_001218869.1\|878637_879903_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
886481:886495	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1161985 : 1169125

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001279004.1\|1161985_1162624_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5
WP_000590411.1\|1162620_1163883_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_000847996.1\|1163879_1164788_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_001296319.1\|1164983_1165751_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_001141293.1\|1165801_1166458_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_000103863.1\|1166563_1169125_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8

DBSCAN-SWA_3

1238617 : 1326398

Enterobacteria_phage(33.93%)

tRNA,portal,lysis,terminase,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029700790.1\|1238617_1239790_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	5.1e-147	67.5
WP_001331174.1\|1239750_1239957_-	hypothetical protein	I6PBM8	Cronobacter_phage	6.9e-23	70.3
WP_001331173.1\|1240016_1240232_-	hypothetical protein	K7PLX1	Enterobacteria_phage	1.2e-14	65.1
WP_001222408.1\|1240228_1240591_-	phage protein	K7PH61	Enterobacteria_phage	2.0e-65	96.7
WP_000008249.1\|1240581_1241118_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	4.8e-100	98.9
WP_029700792.1\|1241246_1242071_-	DUF2303 family protein	K7PJQ6	Enterobacteria_phage	1.0e-149	99.3
WP_000135682.1\|1242136_1242499_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_000016389.1\|1242967_1243402_+	hypothetical protein	U5P096	Shigella_phage	8.4e-79	100.0
WP_000549623.1\|1243373_1243580_-	hypothetical protein	NA	NA	NA	NA
WP_000450737.1\|1243827_1244454_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	1.9e-47	48.8
WP_000205494.1\|1244551_1244752_+	cell division protein	NA	NA	NA	NA
WP_001250269.1\|1245517_1245697_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104967.1\|1245686_1246628_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.3e-153	100.0
WP_021576994.1\|1246624_1247119_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	2.5e-87	99.4
WP_001355692.1\|1247118_1247772_+	phage N-6-adenine-methyltransferase	A0A0P0ZCC0	Stx2-converting_phage	1.1e-127	100.0
WP_000210155.1\|1247768_1248095_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	7.8e-53	98.1
WP_000767113.1\|1248091_1248481_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_029700795.1\|1248500_1249298_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	2.6e-150	99.6
WP_001360050.1\|1249305_1250295_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-195	100.0
WP_029700797.1\|1250312_1250654_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.6e-56	89.4
WP_001531322.1\|1250666_1251215_-	hypothetical protein	NA	NA	NA	NA
WP_000868396.1\|1251201_1252128_-	hypothetical protein	NA	NA	NA	NA
WP_029700800.1\|1252392_1252596_+	hypothetical protein	A0A291AWX6	Escherichia_phage	3.0e-31	98.5
WP_029700801.1\|1252746_1253799_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	1.4e-207	99.7
WP_000839596.1\|1253866_1254082_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135250.1\|1254081_1254579_+	lysozyme RrrD	A0A291AWW2	Escherichia_phage	4.5e-92	100.0
WP_029700804.1\|1254575_1255043_+\|lysis	lysis protein	K7PH77	Enterobacteria_phage	6.1e-75	97.4
WP_001139681.1\|1255030_1255183_+	hypothetical protein	K7PKL2	Enterobacteria_phage	4.7e-21	96.0
WP_000373425.1\|1255858_1256353_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
WP_000934127.1\|1256352_1258455_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	97.4
WP_001072975.1\|1258451_1258664_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_029700806.1\|1258663_1260172_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	6.6e-288	99.6
WP_001136591.1\|1260116_1262144_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	0.0e+00	99.8
WP_001097050.1\|1262230_1262554_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_001283144.1\|1262546_1262822_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	8.6e-45	98.9
WP_029700808.1\|1262833_1263412_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.6e-101	98.4
WP_001079398.1\|1263408_1263810_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
WP_000211099.1\|1263821_1264565_+	hypothetical protein	A0A291AWU6	Escherichia_phage	3.0e-132	99.6
WP_001440689.1\|1264625_1265012_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	6.1e-65	99.2
WP_001161009.1\|1265020_1265350_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_029700810.1\|1265321_1268387_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	99.2
WP_000447247.1\|1268386_1268716_+\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	1.7e-60	99.1
WP_001152385.1\|1268725_1269424_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	6.0e-135	100.0
WP_064735486.1\|1269428_1270172_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.3e-147	95.1
WP_050550752.1\|1270108_1270717_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	8.1e-104	97.0
WP_029700815.1\|1270777_1274275_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	97.5
WP_029700816.1\|1274345_1274945_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	4.5e-107	95.5
WP_072059871.1\|1275009_1278081_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	2.8e-67	80.7
WP_029701022.1\|1278080_1278665_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.6e-103	95.8
WP_000355482.1\|1278734_1279508_-	hypothetical protein	G9IA57	Pseudomonas_phage	4.1e-36	37.7
WP_072095179.1\|1279944_1281348_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	4.0e-106	50.1
WP_012602456.1\|1281382_1282597_-	type II restriction endonuclease	E5E3X4	Burkholderia_phage	7.9e-34	38.6
WP_000162574.1\|1283402_1283885_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_000600193.1\|1284016_1284493_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_001117834.1\|1284482_1284773_+	RnfH family protein	NA	NA	NA	NA
WP_001203437.1\|1284834_1285176_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880939.1\|1285324_1286986_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059176.1\|1287071_1287950_-	NAD(+) kinase	NA	NA	NA	NA
WP_001296310.1\|1288072_1288666_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_010723175.1\|1288719_1290006_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001189256.1\|1290026_1290893_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460035.1\|1290984_1292346_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256450.1\|1292482_1292731_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043335.1\|1292749_1293298_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000264790.1\|1293328_1294096_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065253.1\|1294137_1294485_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_000589791.1\|1294561_1295044_-	OmpA family protein	NA	NA	NA	NA
WP_000969008.1\|1295059_1296286_-	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_001212400.1\|1296275_1296794_-	YfiR family protein	NA	NA	NA	NA
WP_001296308.1\|1296940_1297306_-	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001168045.1\|1297515_1298586_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
WP_000225212.1\|1298596_1299718_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000200140.1\|1299760_1300921_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_001386991.1\|1301019_1301067_-	hypothetical protein	NA	NA	NA	NA
WP_000178456.1\|1301170_1301512_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197686.1\|1301781_1302519_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079111.1\|1302653_1303634_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000040156.1\|1303630_1304362_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235102.1\|1304491_1307065_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000852119.1\|1312854_1314153_+	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	2.4e-44	31.5
WP_001467872.1\|1314149_1314473_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_001312028.1\|1314518_1315874_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000082935.1\|1315987_1318648_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_001296305.1\|1318679_1319378_-	DTW domain-containing protein	NA	NA	NA	NA
WP_001098726.1\|1319446_1319866_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_000997384.1\|1320072_1321110_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001262723.1\|1321157_1321847_-	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	2.1e-55	52.1
WP_000627804.1\|1322151_1322535_+	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	4.7e-33	70.9
WP_000189207.1\|1322590_1323178_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_001296304.1\|1323280_1324162_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000219193.1\|1324194_1325529_-	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_000083664.1\|1325660_1326398_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA

DBSCAN-SWA_4

1777167 : 1820099

Enterobacteria_phage(46.15%)

transposase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000968208.1\|1777167_1777863_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_001295452.1\|1777859_1778258_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_000691708.1\|1780611_1780695_-	protein YohP	NA	NA	NA	NA
WP_122984437.1\|1780828_1782355_+	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA
WP_000079537.1\|1782407_1783169_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_000365433.1\|1783298_1783877_-	DedA family protein	NA	NA	NA	NA
WP_001295454.1\|1784046_1784634_+	YIP1 family protein	NA	NA	NA	NA
WP_001319943.1\|1784807_1785740_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_000097409.1\|1785778_1787494_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_000871487.1\|1787689_1789987_+	beta-glucosidase BglX	NA	NA	NA	NA
WP_001131267.1\|1790176_1791094_+	glycine betaine ABC transporter substrate-binding protein OsmF	NA	NA	NA	NA
WP_000221815.1\|1791100_1792258_+	glycine betaine ABC transporter permease YehY	NA	NA	NA	NA
WP_000569347.1\|1792250_1793177_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8
WP_000783109.1\|1793181_1793913_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1793893_1794001_-	protein YohO	NA	NA	NA	NA
WP_001240408.1\|1794060_1794792_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001295431.1\|1795013_1796699_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1796695_1797415_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1797461_1797932_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|1797972_1798434_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001296230.1\|1798558_1800562_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001292786.1\|1800558_1801695_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7
WP_001294398.1\|1801687_1803967_-	hypothetical protein	NA	NA	NA	NA
WP_001296229.1\|1803977_1805066_-	MoxR family ATPase	NA	NA	NA	NA
WP_000356760.1\|1806144_1809777_-	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|1812575_1813280_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_050011420.1\|1813270_1813633_+\|transposase	IS1380 family transposase	A0A1B0VDR3	Salmonella_phage	3.8e-40	100.0
WP_000239590.1\|1813888_1814764_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001393253.1\|1814810_1815143_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_001067855.1\|1816560_1817265_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|1818292_1818997_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_165587319.1\|1818942_1820099_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.8e-17	33.6

DBSCAN-SWA_5

1908830 : 1915133

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116066.1\|1908830_1910225_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0
WP_000183040.1\|1910399_1911293_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.0e-46	42.0
WP_000699407.1\|1911665_1912751_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-101	53.9
WP_001023641.1\|1912750_1913650_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_000857525.1\|1913707_1914586_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.5
WP_001100793.1\|1914590_1915133_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8

DBSCAN-SWA_6

1938280 : 2014421

Enterobacteria_phage(44.78%)

head,integrase,coat,tail,portal,holin,transposase,lysis,terminase,protease

attL 1933228:1933243|attR 1996165:1996180

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1933228:1933243	attL	NA	NA	NA	NA
WP_001531805.1\|1938280_1938739_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.2e-11	31.5
WP_001576845.1\|1938849_1940274_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_029700882.1\|1940455_1941634_+\|integrase	site-specific integrase	A0A0P0ZDN8	Stx2-converting_phage	2.4e-229	98.5
WP_000132739.1\|1941614_1941806_-	AlpA family phage regulatory protein	A0A0P0ZBL0	Stx2-converting_phage	1.7e-31	100.0
WP_029700883.1\|1941885_1942230_-	hypothetical protein	K7PJY7	Enterobacterial_phage	3.8e-58	97.4
WP_001277766.1\|1942330_1942510_-	Eag protein	K7PL40	Enterobacteria_phage	2.8e-28	96.6
WP_029700885.1\|1942606_1943404_-	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	8.3e-48	65.6
WP_029700887.1\|1943542_1943734_-	hypothetical protein	A0A0F6R8N3	Escherichia_coli_O157_typing_phage	3.6e-26	92.1
WP_029700889.1\|1943726_1944323_-	ead/Ea22-like family protein	H6WZG2	Escherichia_phage	9.5e-73	78.3
WP_050011452.1\|1944309_1944687_-	hypothetical protein	A0A222YWN7	Escherichia_phage	4.8e-22	61.6
WP_001111298.1\|1944861_1945155_-	DUF2856 family protein	K7P7E6	Enterobacteria_phage	1.9e-50	99.0
WP_001535902.1\|1945178_1945766_-	hypothetical protein	G9L666	Escherichia_phage	8.4e-106	99.5
WP_000536247.1\|1945762_1946443_-	AAA family ATPase	A0A2D1GLT5	Escherichia_phage	4.5e-127	100.0
WP_000613347.1\|1946451_1946640_-	hypothetical protein	A0A2D1GM16	Escherichia_phage	1.7e-28	100.0
WP_000372936.1\|1946636_1946750_-	host cell division inhibitory peptide Kil	K7PL44	Enterobacteria_phage	7.8e-13	97.3
WP_001198861.1\|1946718_1946883_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_029700895.1\|1947073_1947544_-	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	5.3e-87	98.7
WP_128357223.1\|1947547_1947799_-	hypothetical protein	A0A088CPT8	Enterobacteria_phage	4.4e-40	95.2
WP_029700898.1\|1947838_1948462_-	hypothetical protein	K7PKU5	Enterobacteria_phage	5.8e-105	95.7
WP_072190279.1\|1948473_1948854_-	antitermination protein	A4KWR0	Enterobacteria_phage	3.1e-53	100.0
WP_104460248.1\|1949134_1949830_-	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	3.7e-129	96.1
WP_000067728.1\|1949905_1950121_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	8.2e-35	98.6
WP_000536663.1\|1950237_1950519_+	hypothetical protein	K7PMG0	Enterobacteria_phage	7.4e-44	98.9
WP_000166207.1\|1950553_1950700_+	DUF2740 family protein	Q687G5	Enterobacteria_phage	1.1e-19	100.0
WP_029700901.1\|1950692_1951553_+	replication protein	K7PL20	Enterobacteria_phage	9.6e-159	99.3
WP_029700902.1\|1951660_1953541_+	DNA replication protein	K7PK08	Enterobacteria_phage	0.0e+00	99.8
WP_000736913.1\|1953618_1954059_+	recombination protein NinB	M1FPM8	Enterobacteria_phage	1.2e-80	100.0
WP_001254220.1\|1954055_1954232_+	NinE family protein	K7PHE6	Enterobacteria_phage	2.7e-28	100.0
WP_029700904.1\|1954234_1954600_+	DUF2591 family protein	G8EYI2	Enterobacteria_phage	3.3e-60	94.8
WP_029700905.1\|1954592_1954772_+	protein ninF	G9L691	Escherichia_phage	1.3e-25	100.0
WP_000237096.1\|1954761_1955154_+	hypothetical protein	A0A077SL57	Escherichia_phage	5.9e-15	36.1
WP_021571394.1\|1955146_1955758_+	recombination protein NinG	A0A088CQ20	Enterobacteria_phage	6.0e-99	99.5
WP_000144614.1\|1955754_1955961_+	protein ninH	Q716C0	Shigella_phage	7.3e-33	100.0
WP_029700907.1\|1955938_1956610_+	serine/threonine protein phosphatase	K7PJY0	Enterobacterial_phage	5.0e-131	99.1
WP_029700909.1\|1956600_1957119_+	DUF1133 family protein	A5VW83	Enterobacteria_phage	4.5e-95	98.3
WP_000783734.1\|1957583_1957907_+\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_029700910.1\|1958364_1958802_+\|lysis	lysis protein	A0A2I6PIF7	Escherichia_phage	1.0e-71	99.3
WP_004015017.1\|1959004_1959547_+	phage regulatory, Rha family protein	A0A088CBJ5	Shigella_phage	3.1e-91	91.7
WP_000807788.1\|1959774_1960017_+	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_000113732.1\|1960019_1960460_+	hypothetical protein	C7U0V7	Enterobacteria_phage	1.7e-79	99.3
WP_029700916.1\|1960456_1961872_+\|terminase	PBSX family phage terminase large subunit	A5VW75	Enterobacteria_phage	1.6e-275	98.9
WP_029700917.1\|1961873_1964072_+\|portal	portal protein	A0A088CQ69	Enterobacteria_phage	0.0e+00	97.3
WP_000372575.1\|1964162_1965056_+	scaffold protein	A0A088CPT0	Enterobacteria_phage	4.3e-130	99.0
WP_029700919.1\|1965074_1966328_+\|coat	coat protein	A0A088CQ56	Enterobacteria_phage	7.7e-234	98.3
WP_001389518.1\|1966369_1966558_+	hypothetical protein	A0A088CPR7	Enterobacteria_phage	2.9e-28	100.0
WP_001140510.1\|1966538_1967000_+\|head	head DNA stabilization protein	A5VW70	Enterobacteria_phage	7.1e-84	100.0
WP_029700923.1\|1967009_1968428_+	Packaged DNA stabilization protein gp10	Q716G7	Shigella_phage	4.2e-276	99.6
WP_029700925.1\|1968427_1969129_+\|tail	tail protein	A5VW68	Enterobacteria_phage	6.2e-116	96.1
WP_029700927.1\|1969128_1969584_+	DUF2824 family protein	A0A2D1GLX4	Escherichia_phage	7.4e-86	98.7
WP_000964872.1\|1969586_1970279_+	DNA transfer protein	A5VW66	Enterobacteria_phage	5.8e-114	97.8
WP_029700929.1\|1970289_1971564_+	phage DNA ejection protein	E7C9U5	Salmonella_phage	3.4e-128	61.0
WP_029700931.1\|1971563_1973672_+	hypothetical protein	Q9AYY9	Salmonella_phage	1.2e-284	84.1
WP_000467047.1\|1973696_1974119_-	hypothetical protein	NA	NA	NA	NA
WP_001263856.1\|1974246_1974795_-	PIN domain-containing protein	NA	NA	NA	NA
WP_000749484.1\|1974785_1975505_-	hypothetical protein	NA	NA	NA	NA
WP_029700933.1\|1975554_1975809_-	Arc family DNA-binding protein	A5VW60	Enterobacteria_phage	2.0e-32	88.6
WP_001555391.1\|1975899_1976058_+	Arc family DNA-binding protein	I6S1K8	Salmonella_phage	9.3e-20	92.3
WP_000868958.1\|1976054_1976279_+	hypothetical protein	NA	NA	NA	NA
WP_029700934.1\|1976341_1977244_+	antirepressor	Q0H8C7	Salmonella_phage	2.5e-170	97.7
WP_001296209.1\|1980328_1981495_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	5.9e-228	99.5
WP_001105368.1\|1981613_1982087_+	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_001200889.1\|1982284_1983343_+	FUSC family protein	NA	NA	NA	NA
WP_000450409.1\|1983514_1983844_+	DUF496 family protein	NA	NA	NA	NA
WP_001296208.1\|1983944_1984127_-	hypothetical protein	NA	NA	NA	NA
WP_001161660.1\|1984615_1984729_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000988600.1\|1984741_1984936_-	hypothetical protein	NA	NA	NA	NA
WP_165696580.1\|1984932_1985307_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_001280918.1\|1985395_1985764_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000086752.1\|1985779_1986424_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.8e-24	32.9
WP_000692345.1\|1986442_1986664_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186200.1\|1986726_1987203_-	RadC family protein	NA	NA	NA	NA
WP_001542276.1\|1987218_1987692_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	4.3e-12	33.1
WP_001164966.1\|1987785_1988031_-	hypothetical protein	NA	NA	NA	NA
WP_001542275.1\|1988030_1988849_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	8.8e-45	38.6
WP_000846703.1\|1989069_1989480_-	hypothetical protein	NA	NA	NA	NA
WP_001016257.1\|1989928_1990675_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|1990689_1992231_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001542273.1\|1992345_1992759_-	hypothetical protein	NA	NA	NA	NA
WP_000102633.1\|1992894_1993965_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_000203551.1\|1993961_1994867_-	chemotaxis protein	NA	NA	NA	NA
WP_001531797.1\|1994863_1997248_-	hypothetical protein	NA	NA	NA	NA
1996165:1996180	attR	NA	NA	NA	NA
WP_001069649.1\|1997465_1997900_-	hypothetical protein	NA	NA	NA	NA
WP_000856948.1\|1998328_2000494_+	TonB-dependent receptor	NA	NA	NA	NA
WP_000778018.1\|2000504_2001494_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000217077.1\|2001512_2002571_+	iron ABC transporter permease	NA	NA	NA	NA
WP_000016207.1\|2002567_2003335_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.5e-14	27.9
WP_001163787.1\|2003388_2003646_+	hypothetical protein	NA	NA	NA	NA
WP_000080195.1\|2004020_2005634_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|2005664_2006015_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|2006011_2006437_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_001296206.1\|2006716_2007862_-	hypothetical protein	NA	NA	NA	NA
WP_089438313.1\|2009061_2009241_-\|transposase	transposase	NA	NA	NA	NA
WP_000255956.1\|2009386_2010409_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
WP_000970353.1\|2010408_2011101_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.7e-118	88.4
WP_000813432.1\|2012126_2012729_-	hypothetical protein	NA	NA	NA	NA
WP_001304240.1\|2012822_2013101_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001296203.1\|2013224_2014421_-\|transposase	IS110-like element ISEc20 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2136372 : 2275661

164

Enterobacteria_phage(35.71%)

tRNA,head,integrase,tail,portal,capsid,holin,plate,transposase,lysis,terminase

attL 2166031:2166048|attR 2276124:2276141

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001531780.1\|2136372_2137389_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
WP_000833838.1\|2137357_2137621_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_000916334.1\|2137830_2138013_-	hypothetical protein	NA	NA	NA	NA
WP_000100753.1\|2138012_2138582_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
WP_000151806.1\|2138578_2140795_-	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000388260.1\|2140825_2141146_-	hypothetical protein	NA	NA	NA	NA
WP_001296165.1\|2142156_2142570_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000360804.1\|2142668_2142899_+	transcriptional regulator	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_000431205.1\|2142957_2143434_+	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000943914.1\|2143473_2143698_+	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_001023813.1\|2143694_2144450_+	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
WP_000609322.1\|2144439_2145855_+	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_000214056.1\|2145893_2146304_+	hypothetical protein	NA	NA	NA	NA
WP_000918616.1\|2146305_2146542_+	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|2146538_2146850_+	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000661082.1\|2146846_2147071_+	hypothetical protein	NA	NA	NA	NA
WP_001531776.1\|2147752_2148541_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_001237642.1\|2148715_2149639_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_000536231.1\|2150826_2151525_+	hypothetical protein	Q858R8	Enterobacteria_phage	1.5e-117	91.4
WP_001138663.1\|2151987_2152593_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|2152602_2153091_-	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_000536919.1\|2153489_2153723_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|2153966_2154608_+	hypothetical protein	NA	NA	NA	NA
WP_001025459.1\|2154759_2154939_+	hypothetical protein	NA	NA	NA	NA
WP_000057010.1\|2155016_2155613_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_000717783.1\|2155609_2155903_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000064384.1\|2155902_2156574_+	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_001294589.1\|2156686_2157070_+	hypothetical protein	NA	NA	NA	NA
WP_000172496.1\|2157069_2157342_+\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_000131873.1\|2157341_2157821_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000734931.1\|2157828_2158023_+	hypothetical protein	NA	NA	NA	NA
WP_001531775.1\|2158082_2158328_-	hypothetical protein	NA	NA	NA	NA
WP_000168117.1\|2158696_2159263_+	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_000148195.1\|2159249_2161112_+\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000203897.1\|2161111_2161345_+	hypothetical protein	NA	NA	NA	NA
WP_000126513.1\|2161341_2162916_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_001145892.1\|2162915_2164223_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000206292.1\|2164222_2164552_+	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001283997.1\|2164610_2165645_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
WP_000105179.1\|2165679_2166099_+	DNA-packaging protein	NA	NA	NA	NA
2166031:2166048	attL	NA	NA	NA	NA
WP_001531773.1\|2166095_2166476_+	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|2166507_2167188_+	hypothetical protein	NA	NA	NA	NA
WP_000015612.1\|2167184_2167721_+	hypothetical protein	NA	NA	NA	NA
WP_000079174.1\|2167701_2168604_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000901289.1\|2168606_2168948_+\|plate	phage baseplate assembly protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000633314.1\|2168944_2169865_+\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000203868.1\|2169867_2170494_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_000829621.1\|2170486_2171671_+\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000626358.1\|2171670_2172060_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_000117510.1\|2172056_2173559_+\|tail	tail sheath protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000785563.1\|2173576_2174089_+\|tail	phage tail protein	NA	NA	NA	NA
WP_000444667.1\|2174101_2174383_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001018353.1\|2174491_2176132_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_001531768.1\|2176167_2176557_+\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001531767.1\|2176718_2176943_+	hypothetical protein	NA	NA	NA	NA
WP_001296152.1\|2178157_2178577_+	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_000847882.1\|2179048_2179714_+	UPF0149 family protein YecA	NA	NA	NA	NA
WP_000797555.1\|2179764_2180976_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000377224.1\|2181166_2181406_+	YecH family protein	NA	NA	NA	NA
WP_000917208.1\|2181443_2181941_-	non-heme ferritin	NA	NA	NA	NA
WP_001237881.1\|2182112_2182436_-	hypothetical protein	NA	NA	NA	NA
WP_010723106.1\|2182699_2182786_+	stress response protein AzuC	NA	NA	NA	NA
WP_000082127.1\|2182900_2183152_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_000179469.1\|2183229_2183733_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000548680.1\|2184527_2185517_+	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_001187827.1\|2185586_2187101_+	arabinose ABC transporter ATP binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000100203.1\|2187115_2188102_+	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001296149.1\|2188268_2189069_+	trehalose-phosphatase	NA	NA	NA	NA
WP_001296148.1\|2189043_2190468_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_000122413.1\|2190474_2190903_-	universal stress protein UspC	NA	NA	NA	NA
WP_001295647.1\|2191682_2192033_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_001291603.1\|2192035_2192614_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_000906342.1\|2192740_2193628_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_000795641.1\|2193624_2194551_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_001531763.1\|2194555_2196520_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_000147302.1\|2196540_2197044_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_001296146.1\|2197188_2198850_+	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000204320.1\|2199140_2200001_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000036371.1\|2200003_2201053_+	protein-glutamate methylesterase/protein glutamine deamidase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000763867.1\|2201067_2201457_+	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000983600.1\|2201467_2202112_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_001278946.1\|2202300_2203449_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000066973.1\|2203441_2205520_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001202076.1\|2205519_2205912_+	flagellar protein FlhE	NA	NA	NA	NA
WP_001025326.1\|2205964_2207698_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001490174.1\|2207913_2208480_+	VOC family protein	NA	NA	NA	NA
WP_001185734.1\|2208493_2209240_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214293.1\|2209627_2210728_+	cytochrome c	NA	NA	NA	NA
WP_000176764.1\|2210752_2213182_+	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_000564759.1\|2213217_2214189_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|2214185_2214929_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252980.1\|2214969_2215365_-	hypothetical protein	NA	NA	NA	NA
WP_042040108.1\|2215417_2216188_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.1e-72	99.2
WP_000362005.1\|2216169_2217483_-\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	4.1e-246	95.6
WP_000528718.1\|2217538_2217775_-	excisionase family protein	Q8W657	Enterobacteria_phage	6.4e-41	100.0
WP_001030156.1\|2217783_2217930_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	1.6e-21	93.8
WP_000457723.1\|2217933_2218176_-	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.3e-32	87.5
WP_021519728.1\|2218260_2218605_-	hypothetical protein	A0A2R2Z2X8	Escherichia_phage	1.4e-57	98.2
WP_021519727.1\|2218601_2218769_-	hypothetical protein	A0A192Y7X3	Salmonella_phage	3.6e-14	80.8
WP_000224227.1\|2218779_2219043_-	hypothetical protein	A0A2P0P958	Salmonella_phage	8.8e-31	72.4
WP_021519726.1\|2219044_2219455_-	hypothetical protein	C6ZR27	Salmonella_phage	2.7e-18	49.6
WP_021519725.1\|2219456_2220272_-	ead/Ea22-like family protein	A0A2I6TD51	Escherichia_phage	1.3e-141	96.4
WP_021519724.1\|2220258_2220573_-	hypothetical protein	B1GS43	Salmonella_phage	2.8e-39	86.0
WP_000179800.1\|2220526_2220844_-	DUF4752 family protein	A0A1I9LJV1	Stx_converting_phage	5.2e-38	82.6
WP_001199104.1\|2221092_2221674_-	hypothetical protein	Q8W653	Enterobacteria_phage	1.9e-70	65.1
WP_021519723.1\|2221679_2221862_-	hypothetical protein	Q8W652	Enterobacteria_phage	2.9e-09	50.9
WP_021519722.1\|2222056_2222263_-	hypothetical protein	Q8W651	Enterobacteria_phage	2.0e-30	95.6
WP_000608402.1\|2222550_2223054_-	helix-turn-helix domain-containing protein	Q8W649	Enterobacteria_phage	1.2e-63	95.5
WP_000838344.1\|2223157_2223814_-	helix-turn-helix domain-containing protein	Q8W648	Enterobacteria_phage	3.1e-125	97.7
WP_001090259.1\|2224149_2224857_+	DNA-binding protein	Q8W645	Enterobacteria_phage	9.1e-107	86.0
WP_029700954.1\|2224965_2225628_+	hypothetical protein	Q8W643	Enterobacteria_phage	4.7e-97	84.9
WP_029700955.1\|2225624_2226476_+	hypothetical protein	Q8HA97	Salmonella_phage	1.9e-103	68.9
WP_000626792.1\|2226472_2226667_+	hypothetical protein	NA	NA	NA	NA
WP_000618007.1\|2226663_2226888_+	hypothetical protein	NA	NA	NA	NA
WP_000092417.1\|2227180_2228167_+	hypothetical protein	Q8W642	Enterobacteria_phage	1.7e-55	96.3
WP_000988266.1\|2228177_2229077_+	ATP-binding protein	Q8W641	Enterobacteria_phage	2.3e-139	94.8
WP_029700958.1\|2229073_2230474_+	replicative DNA helicase	Q8W640	Enterobacteria_phage	3.0e-250	93.9
WP_001520742.1\|2230470_2230728_+	hypothetical protein	Q8W639	Enterobacteria_phage	4.4e-35	100.0
WP_001205451.1\|2230727_2231096_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.2e-56	90.0
WP_001025378.1\|2231159_2232200_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	9.3e-100	50.9
WP_000052342.1\|2232168_2232858_-	hypothetical protein	NA	NA	NA	NA
WP_000209290.1\|2232860_2234018_-	DUF262 domain-containing protein	A0A0R6PJX3	Moraxella_phage	2.3e-59	37.4
WP_000917767.1\|2234271_2234469_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_000193280.1\|2236873_2237224_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.9e-37	95.2
WP_016248004.1\|2237287_2237821_+	lysozyme	Q6H9V6	Enterobacteria_phage	2.5e-101	96.6
WP_000459345.1\|2237980_2238118_+	hypothetical protein	Q687G2	Enterobacteria_phage	1.3e-17	97.8
WP_001082546.1\|2238119_2238587_+\|lysis	lysis protein	Q9ZXB6	Enterobacteria_phage	3.4e-78	99.4
WP_000347013.1\|2238937_2239078_+	hypothetical protein	NA	NA	NA	NA
WP_001329960.1\|2239210_2239396_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	3.2e-19	90.4
WP_001102145.1\|2239783_2240332_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	6.1e-58	82.7
WP_094083981.1\|2240261_2242232_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.1e-262	67.5
WP_000259002.1\|2242215_2242422_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_029701046.1\|2242418_2244011_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	3.2e-184	60.9
WP_001253935.1\|2244000_2245506_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.6e-100	53.5
WP_000256835.1\|2245542_2245890_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.9e-21	55.9
WP_000522601.1\|2245947_2246976_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.1e-113	62.2
WP_000201501.1\|2247027_2247411_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_001402971.1\|2247403_2247757_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	9.6e-41	69.2
WP_001575631.1\|2247771_2248347_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.1e-49	57.8
WP_000683079.1\|2248343_2248739_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000235110.1\|2248746_2249499_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	1.2e-133	98.4
WP_000479095.1\|2249512_2249944_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.2e-42	68.8
WP_000533402.1\|2249970_2250384_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_023909007.1\|2250364_2252938_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	83.3
WP_000847298.1\|2252934_2253264_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_033561175.1\|2253263_2253962_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	6.4e-129	96.1
WP_000194723.1\|2253972_2254716_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	5.0e-148	98.0
WP_122997661.1\|2254661_2255294_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.5e-100	94.3
WP_134163207.1\|2256764_2259110_+	host specificity protein J	Q9EYE7	Enterobacteria_phage	0.0e+00	98.6
WP_106493736.1\|2259928_2262955_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	7.2e-68	82.1
WP_000631346.1\|2262951_2263854_+\|tail	tail protein	A0A0M4QWS3	Salmonella_phage	4.0e-99	63.9
WP_029701058.1\|2263862_2264447_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.5e-102	94.3
WP_029701056.1\|2264559_2265930_-	reverse transcriptase	NA	NA	NA	NA
WP_000545005.1\|2265907_2266459_-	SLATT domain-containing protein	NA	NA	NA	NA
WP_000891625.1\|2267277_2267844_-	hydrolase	NA	NA	NA	NA
WP_001258676.1\|2268153_2269926_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_077249130.1\|2269918_2270371_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_000907234.1\|2270399_2271140_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001295503.1\|2271174_2271696_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_001024911.1\|2271697_2272300_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_072093883.1\|2272370_2272436_+	hypothetical protein	NA	NA	NA	NA
WP_000580323.1\|2272574_2273186_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_000568520.1\|2273194_2274205_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_165696581.1\|2274314_2275661_+\|transposase	IS3-like element IS1397 family transposase	A0A1B1P773	Bacillus_phage	8.7e-74	52.4
2276124:2276141	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2409371 : 2458067

Burkholderia_virus(35.71%)

tRNA,integrase,capsid,plate,transposase,tail

attL 2408732:2408748|attR 2460700:2460716

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2408732:2408748	attL	NA	NA	NA	NA
WP_001144199.1\|2409371_2411300_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.6e-129	37.1
WP_001700733.1\|2411303_2411846_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	32.9
WP_001124225.1\|2411942_2412140_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_000124850.1\|2412192_2412549_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_001386830.1\|2412671_2412716_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000018588.1\|2412999_2413983_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.1e-33	38.5
WP_000672320.1\|2413997_2416385_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_001229265.1\|2416389_2416689_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_000956533.1\|2416789_2417770_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_001154187.1\|2417832_2418384_+	bifunctional thioredoxin/glutathione peroxidase	NA	NA	NA	NA
WP_000029460.1\|2418383_2419133_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	28.2
WP_001209785.1\|2419210_2419675_+	endopeptidase	S5MM68	Bacillus_phage	2.1e-11	36.9
WP_001296111.1\|2419922_2420636_+	anti-FlhDC factor	NA	NA	NA	NA
WP_000904922.1\|2420739_2421312_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_001427100.1\|2421383_2421896_+\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	1.3e-33	47.9
WP_000072166.1\|2421895_2422510_+\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	1.7e-61	61.5
WP_024240575.1\|2422516_2422990_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.8e-34	51.8
WP_077883632.1\|2423000_2424995_-	short-chain fatty acid transporter	A0A0K2FIZ6	Escherichia_phage	2.7e-39	44.4
WP_000138756.1\|2424997_2425576_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_001219102.1\|2425568_2426672_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	8.3e-107	55.2
WP_000859111.1\|2426662_2427010_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
WP_001404342.1\|2427064_2427661_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.7
WP_001545521.1\|2427657_2428812_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.2e-84	47.3
WP_032142594.1\|2428799_2429015_-	membrane protein	Q6QIA3	Burkholderia_phage	3.5e-17	55.7
WP_000458386.1\|2429011_2429896_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_001202894.1\|2433184_2433343_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084213.1\|2433266_2433602_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000110114.1\|2433699_2433981_-	hypothetical protein	NA	NA	NA	NA
WP_162832341.1\|2433983_2434508_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.1e-67	66.7
WP_012602372.1\|2435922_2436177_-	hypothetical protein	NA	NA	NA	NA
WP_001101804.1\|2436173_2436638_-	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000271668.1\|2436637_2437084_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_000537457.1\|2437085_2437424_-	DUF2190 family protein	NA	NA	NA	NA
WP_001286908.1\|2437433_2438387_-	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_001273074.1\|2438401_2439517_-	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
WP_000135513.1\|2439731_2440190_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
WP_000117560.1\|2440192_2441014_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	1.2e-97	61.2
WP_001546013.1\|2440994_2442491_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	4.8e-166	59.2
WP_001409862.1\|2442490_2444023_-	hypothetical protein	A4JWJ4	Burkholderia_virus	4.8e-185	62.8
WP_000124060.1\|2444082_2444628_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_000227700.1\|2444627_2444939_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000175097.1\|2444938_2445265_-	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_000264664.1\|2445261_2445912_-	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
WP_001104440.1\|2445895_2446636_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000793146.1\|2446638_2446989_-	membrane protein	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_000149906.1\|2447119_2447596_+	ABC transporter ATPase	NA	NA	NA	NA
WP_001330012.1\|2447633_2448221_-	hypothetical protein	NA	NA	NA	NA
WP_000031883.1\|2448305_2449292_-	hypothetical protein	NA	NA	NA	NA
WP_001259268.1\|2449288_2449750_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000200153.1\|2449800_2449989_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	6.1e-18	71.0
WP_000049025.1\|2450041_2450350_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	5.5e-24	55.9
WP_000533821.1\|2450360_2451275_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	6.8e-70	52.5
WP_001545516.1\|2451278_2453048_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	2.4e-228	68.3
WP_000960679.1\|2453058_2454225_+	AAA family ATPase	A4JWN1	Burkholderia_virus	2.2e-121	59.4
WP_000843446.1\|2454227_2454497_+	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|2454524_2455055_+	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_001381531.1\|2455343_2455616_+	hypothetical protein	NA	NA	NA	NA
WP_001299260.1\|2455625_2455922_+	hypothetical protein	NA	NA	NA	NA
WP_000763553.1\|2455936_2456152_+	hypothetical protein	NA	NA	NA	NA
WP_000132039.1\|2456148_2456832_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-32	36.1
WP_000631813.1\|2456828_2457059_+	hypothetical protein	NA	NA	NA	NA
WP_000206212.1\|2457048_2457255_+	hypothetical protein	NA	NA	NA	NA
WP_001170114.1\|2457256_2457706_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	6.1e-24	45.1
WP_001281701.1\|2457677_2458067_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2
2460700:2460716	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2804404 : 2831256

Escherichia_phage(25.0%)

transposase,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422062.1\|2804404_2805454_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_000559273.1\|2805673_2806432_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.4
WP_001278898.1\|2806428_2807019_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001000715.1\|2807075_2807384_-	hypothetical protein	NA	NA	NA	NA
WP_000622024.1\|2807393_2808416_-	hypothetical protein	NA	NA	NA	NA
WP_001291206.1\|2808585_2809461_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001296033.1\|2809673_2811569_-	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001295575.1\|2811596_2812217_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001285702.1\|2812213_2813095_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001700591.1\|2813232_2813277_+	trp operon leader peptide	NA	NA	NA	NA
WP_001194644.1\|2813368_2814931_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763535.1\|2814930_2816526_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001195273.1\|2816529_2817888_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.9e-37	41.2
WP_000209513.1\|2817899_2819093_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000443082.1\|2819092_2819899_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_001296031.1\|2820274_2820550_+	hypothetical protein	S5MQL6	Escherichia_phage	1.1e-10	52.9
WP_001348267.1\|2820546_2821104_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	4.2e-30	63.8
WP_000251936.1\|2821230_2821401_-	hypothetical protein	A0A0U2RK60	Escherichia_phage	9.4e-10	62.5
WP_000937495.1\|2821515_2821785_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_000240999.1\|2821841_2822510_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001421220.1\|2822708_2822891_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.4e-24	95.0
WP_001513292.1\|2823016_2823985_+	hypothetical protein	A0A0F7LDR4	Escherichia_phage	6.5e-47	38.8
WP_001164137.1\|2824000_2824528_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	8.4e-73	77.7
WP_000972097.1\|2824558_2825092_-\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.8e-67	70.1
WP_023363168.1\|2825093_2827919_-\|tail	tail protein	Q858V4	Yersinia_virus	9.0e-04	63.6
WP_001016257.1\|2828380_2829127_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|2829141_2830683_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001554091.1\|2830797_2831256_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	9.5e-65	89.0

DBSCAN-SWA_10

2835140 : 2874121

Stx2-converting_phage(32.5%)

head,integrase,portal,capsid,holin,terminase,tail

attL 2833290:2833304|attR 2875085:2875099

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2833290:2833304	attL	NA	NA	NA	NA
WP_061089814.1\|2835140_2835773_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.0e-101	97.6
WP_001296027.1\|2836473_2837172_-\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	5.8e-130	97.4
WP_000807937.1\|2837171_2837513_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	9.0e-60	95.6
WP_000212991.1\|2837505_2840748_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	91.6
WP_001513217.1\|2840795_2841005_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000710949.1\|2841100_2841475_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001275441.1\|2841489_2842206_-\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000133388.1\|2842272_2842617_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|2842613_2843060_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|2843056_2843407_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|2843416_2843743_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_000267294.1\|2843739_2846325_-\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	100.0
WP_001063099.1\|2846270_2846492_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000173031.1\|2846536_2848474_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
WP_001296023.1\|2848537_2850199_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.7
WP_000958366.1\|2850195_2850759_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.6e-82	92.0
WP_000829185.1\|2851049_2851415_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_000095741.1\|2851456_2851657_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000736382.1\|2851855_2852071_-	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|2852156_2852342_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_032140280.1\|2852563_2852650_-	hypothetical protein	NA	NA	NA	NA
WP_000992071.1\|2853204_2853738_-	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_000369850.1\|2853843_2854116_+	hypothetical protein	NA	NA	NA	NA
WP_000193278.1\|2854081_2854426_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000284510.1\|2854430_2854646_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_016230612.1\|2854796_2856650_-	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
WP_000871291.1\|2856910_2857246_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_023142244.1\|2857526_2857658_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.1e-05	100.0
WP_000024331.1\|2858459_2859509_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.4e-198	95.4
WP_000917751.1\|2859660_2859858_-	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
WP_001513213.1\|2860084_2860906_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.7e-80	60.1
WP_000140014.1\|2860902_2861283_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.9e-35	64.5
WP_001265085.1\|2861283_2862339_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
WP_001329966.1\|2862340_2862613_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_000018429.1\|2862780_2862993_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_000150294.1\|2863173_2863839_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001151161.1\|2864013_2864439_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
WP_000450998.1\|2864454_2865225_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_000788950.1\|2865246_2865993_-	ATP-binding protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_000095675.1\|2865999_2866962_-	DNA-binding protein	S5FM81	Shigella_phage	1.4e-70	56.4
WP_000693845.1\|2866984_2867410_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000471549.1\|2867406_2867622_-	transcriptional regulator	NA	NA	NA	NA
WP_000103687.1\|2867671_2868388_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.7e-52	42.0
WP_000379589.1\|2868660_2868816_+	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_001171951.1\|2868975_2869194_+	hypothetical protein	NA	NA	NA	NA
WP_000449179.1\|2869759_2869948_+	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|2869944_2870136_+	DUF1482 family protein	NA	NA	NA	NA
WP_016230610.1\|2870228_2872700_+	exonuclease	A0A192Y6E0	Salmonella_phage	5.7e-55	56.0
WP_000113189.1\|2872764_2873013_+	excisionase	NA	NA	NA	NA
WP_000113700.1\|2872990_2874121_+\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	3.4e-103	51.4
2875085:2875099	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3012082 : 3060331

Enterobacteria_phage(54.72%)

head,tRNA,integrase,portal,capsid,holin,transposase,lysis,terminase,tail

attL 3030866:3030880|attR 3062000:3062014

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000654172.1\|3012082_3012361_-	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4
WP_000290538.1\|3012357_3014379_-	hypothetical protein	A0A0E3M0V5	Enterobacteria_phage	7.2e-181	72.3
WP_001531667.1\|3014437_3017920_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_023149564.1\|3017980_3018583_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-88	85.6
WP_023146277.1\|3018519_3019263_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_001152626.1\|3019267_3019966_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.1e-134	99.6
WP_000847375.1\|3019965_3020295_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
WP_000840216.1\|3020291_3022853_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	98.4
WP_000459457.1\|3022845_3023280_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479203.1\|3023261_3023684_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	94.3
WP_001295979.1\|3023699_3024440_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	1.6e-130	98.0
WP_000683150.1\|3024447_3024843_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.9e-70	98.5
WP_000985120.1\|3024839_3025418_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	92.7
WP_000753018.1\|3025429_3025783_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_000158908.1\|3025794_3026193_-	DNA packaging protein from bacteriophage origin	A0A0K2FIR1	Enterobacteria_phage	1.0e-62	98.5
WP_000063293.1\|3026234_3027260_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
WP_001295978.1\|3027315_3027648_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000123268.1\|3027657_3028977_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.1e-230	97.7
WP_001295977.1\|3028957_3030559_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	98.9
WP_000198149.1\|3030555_3030762_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027261.1\|3030758_3032684_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
3030866:3030880	attL	NA	NA	NA	NA
WP_000453620.1\|3032658_3033204_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	98.3
WP_000881610.1\|3033767_3033950_-	hypothetical protein	NA	NA	NA	NA
WP_000830178.1\|3034156_3034483_-	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001298464.1\|3034963_3035257_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_001228695.1\|3035347_3035530_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001180486.1\|3035746_3036223_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	7.3e-84	94.9
WP_000544528.1\|3036209_3036515_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001097224.1\|3036836_3037526_-	antiterminator Q	I6PDF8	Cronobacter_phage	4.9e-57	48.5
WP_000971096.1\|3037522_3037663_-	YlcG family protein	K7PHH3	Enterobacteria_phage	8.5e-09	68.9
WP_001099488.1\|3037659_3038022_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-59	95.7
WP_000774479.1\|3038018_3038309_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_000224914.1\|3038301_3038472_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001053005.1\|3038471_3038927_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.6e-59	66.9
WP_072147164.1\|3038923_3039025_-	hypothetical protein	NA	NA	NA	NA
WP_029700859.1\|3039374_3040406_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000080195.1\|3040432_3042046_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|3042076_3042427_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|3042423_3042849_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_022645049.1\|3042994_3047260_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000788794.1\|3047509_3048211_-	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	1.5e-125	97.0
WP_001435464.1\|3048207_3049137_-	replication protein	A0A0M5M7Y1	Salmonella_phage	6.1e-111	64.1
WP_001182900.1\|3049223_3049763_-	hypothetical protein	K7PJT7	Enterobacteria_phage	2.6e-61	67.0
WP_001067458.1\|3049832_3050063_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000858975.1\|3050167_3050857_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_000233576.1\|3051452_3051659_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995418.1\|3051734_3052031_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.9e-48	98.0
WP_000100847.1\|3052036_3052822_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186848.1\|3052818_3053499_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000149537.1\|3053495_3053678_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000548516.1\|3053650_3053842_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_021533932.1\|3053852_3054134_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000763374.1\|3054232_3054454_+	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_000002139.1\|3054453_3054780_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000490213.1\|3054763_3055003_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000088653.1\|3055142_3055379_+	excisionase	NA	NA	NA	NA
WP_000741335.1\|3055368_3056511_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_000444487.1\|3056624_3057875_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248677.1\|3058046_3058700_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|3058709_3059171_+	phosphatase NudJ	NA	NA	NA	NA
WP_001295972.1\|3059224_3060331_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
3062000:3062014	attR	NA	NA	NA	NA

DBSCAN-SWA_12

3242948 : 3381445

148

Enterobacteria_phage(41.67%)

tRNA,head,integrase,portal,capsid,transposase,plate,holin,terminase,tail,protease

attL 3324820:3324839|attR 3363480:3363499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000117888.1\|3242948_3244349_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	6.9e-82	36.1
WP_000462681.1\|3246216_3247407_+	aspartate transaminase	NA	NA	NA	NA
WP_001109456.1\|3247456_3248104_-	hydroxyacylglutathione hydrolase GloC	NA	NA	NA	NA
WP_001295932.1\|3248130_3248679_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	7.0e-06	33.7
WP_000925990.1\|3248859_3250707_-	L,D-transpeptidase	NA	NA	NA	NA
WP_000572714.1\|3250967_3255428_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_001295931.1\|3255427_3256132_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288856.1\|3256112_3257435_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001295930.1\|3257431_3258217_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899600.1\|3258352_3259132_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436917.1\|3259108_3260002_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011610.1\|3260155_3260902_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350057.1\|3260898_3261081_-	protein YcaR	NA	NA	NA	NA
WP_000056492.1\|3261132_3262365_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000570547.1\|3262401_3263388_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551259.1\|3263384_3265133_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.3e-57	29.8
WP_000705731.1\|3265169_3267434_-	ComEC family protein	NA	NA	NA	NA
WP_000167336.1\|3267639_3267924_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_000140327.1\|3268083_3269757_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_000125016.1\|3269867_3270551_-	(d)CMP kinase	NA	NA	NA	NA
WP_029364556.1\|3270723_3271506_-	metallopeptidase YcaL	NA	NA	NA	NA
WP_001281701.1\|3271648_3272038_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2
WP_001170114.1\|3272009_3272459_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	6.1e-24	45.1
WP_000206212.1\|3272460_3272667_-	hypothetical protein	NA	NA	NA	NA
WP_000631813.1\|3272656_3272887_-	hypothetical protein	NA	NA	NA	NA
WP_000763554.1\|3273565_3273781_-	hypothetical protein	NA	NA	NA	NA
WP_001295929.1\|3273795_3274092_-	hypothetical protein	NA	NA	NA	NA
WP_000632576.1\|3274101_3274374_-	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|3274662_3275193_-	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_000843446.1\|3275220_3275490_-	hypothetical protein	NA	NA	NA	NA
WP_000960679.1\|3275492_3276659_-	AAA family ATPase	A4JWN1	Burkholderia_virus	2.2e-121	59.4
WP_000186588.1\|3276669_3278439_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	1.5e-227	69.4
WP_001095645.1\|3278454_3278772_-	hypothetical protein	NA	NA	NA	NA
WP_000533817.1\|3278771_3279692_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	1.6e-74	56.2
WP_000047759.1\|3279702_3280011_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	2.7e-23	55.9
WP_000123378.1\|3280063_3280252_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_000031013.1\|3280345_3280702_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000783854.1\|3280818_3281583_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.2e-100	64.4
WP_001069611.1\|3281773_3281989_-	hypothetical protein	NA	NA	NA	NA
WP_000972294.1\|3281987_3282392_+	hypothetical protein	NA	NA	NA	NA
WP_000194951.1\|3282367_3283096_-	hypothetical protein	NA	NA	NA	NA
WP_000793146.1\|3283226_3283577_+	membrane protein	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_001104440.1\|3283579_3284320_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000264665.1\|3284303_3284954_+	hypothetical protein	J9SVN7	Pseudomonas_phage	2.8e-09	32.9
WP_000175099.1\|3284950_3285277_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	48.6
WP_000227701.1\|3285276_3285588_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000124060.1\|3285587_3286133_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_000090684.1\|3287723_3289220_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	9.7e-167	59.0
WP_000117548.1\|3289200_3290022_+\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	1.8e-98	61.9
WP_000135514.1\|3290024_3290483_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_000537457.1\|3292792_3293131_+	DUF2190 family protein	NA	NA	NA	NA
WP_000271668.1\|3293132_3293579_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_001101804.1\|3293578_3294043_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_012602372.1\|3294039_3294294_+	hypothetical protein	NA	NA	NA	NA
WP_000729834.1\|3294283_3295711_+\|tail	tail protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_162832341.1\|3295707_3296232_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.1e-67	66.7
WP_000110114.1\|3296234_3296516_+	hypothetical protein	NA	NA	NA	NA
WP_000084213.1\|3296613_3296949_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001202894.1\|3296872_3297031_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000016538.1\|3297105_3300057_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.8e-86	29.9
WP_000458387.1\|3300056_3300941_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_012602373.1\|3300937_3301153_+	membrane protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000808007.1\|3301140_3302295_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.9e-85	47.6
WP_000148266.1\|3302291_3302888_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.2
WP_000859111.1\|3302942_3303290_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
WP_001219098.1\|3303280_3304384_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.4e-106	55.2
WP_000138756.1\|3304376_3304955_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_023363137.1\|3304957_3306205_+\|tail	tail protein	A0A0K2FIZ6	Escherichia_phage	2.0e-40	43.7
WP_023142129.1\|3306215_3306677_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	3.9e-34	50.0
WP_000072165.1\|3306683_3307298_-\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	2.5e-60	60.5
WP_063269479.1\|3307297_3307822_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.8e-35	48.6
WP_000904922.1\|3307881_3308454_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_000445240.1\|3308709_3309993_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057158.1\|3310063_3311152_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8
WP_000642852.1\|3311350_3312043_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_000194832.1\|3312172_3313933_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_001295917.1\|3314338_3315196_+	formate transporter FocA	NA	NA	NA	NA
WP_001292822.1\|3315250_3317533_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
WP_000111043.1\|3317724_3318465_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	8.0e-21	26.5
WP_000109283.1\|3318561_3319710_-	MFS transporter	NA	NA	NA	NA
WP_000165876.1\|3320023_3320650_+	hydrolase	NA	NA	NA	NA
WP_000534666.1\|3320685_3321549_-	dimethyl sulfoxide reductase anchor subunit DmsC	NA	NA	NA	NA
WP_000213098.1\|3321550_3322168_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000850306.1\|3322178_3324623_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
3324820:3324839	attL	NA	NA	NA	NA
WP_000023739.1\|3324922_3325915_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.3e-103	56.2
WP_001368591.1\|3325984_3326326_-	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	4.7e-16	51.2
WP_001204236.1\|3326430_3326952_+	transcriptional regulator	NA	NA	NA	NA
WP_000856387.1\|3326956_3327379_+	hypothetical protein	NA	NA	NA	NA
WP_001287828.1\|3327385_3327577_-	hypothetical protein	NA	NA	NA	NA
WP_000776267.1\|3327714_3328065_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.1e-56	93.1
WP_000159455.1\|3328075_3328354_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.1e-34	79.3
WP_000514277.1\|3328365_3328608_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021715.1\|3328604_3328718_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.8e-09	89.2
WP_000543036.1\|3328811_3329222_+	hypothetical protein	NA	NA	NA	NA
WP_000985157.1\|3329245_3329449_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000153700.1\|3329445_3329712_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	2.0e-30	75.9
WP_000104290.1\|3329708_3330008_+	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	2.4e-40	88.9
WP_023142408.1\|3330019_3330637_+	hypothetical protein	S5MQL6	Escherichia_phage	1.5e-09	42.0
WP_000599382.1\|3330633_3330999_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.7e-61	97.5
WP_000123489.1\|3331005_3333828_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	98.4
WP_000686485.1\|3333904_3334864_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	4.2e-179	99.1
WP_000211282.1\|3334868_3335183_+	plasmid partition protein	A0A0A7NPT5	Enterobacteria_phage	4.1e-19	52.3
WP_000193205.1\|3335266_3336109_-	hypothetical protein	NA	NA	NA	NA
WP_001068329.1\|3336148_3336646_-	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_000236495.1\|3337369_3337894_+	hypothetical protein	NA	NA	NA	NA
WP_000087814.1\|3337908_3338955_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.2e-202	99.7
WP_000613780.1\|3338954_3340706_-\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.8
WP_001262655.1\|3340860_3341697_+\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	99.6
WP_001055083.1\|3341720_3342773_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.4e-188	94.3
WP_000632309.1\|3342818_3343619_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.9e-127	89.1
WP_000063100.1\|3343720_3344215_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.9e-87	97.0
WP_000864901.1\|3344214_3344415_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_001342221.1\|3344417_3344741_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.7e-47	93.5
WP_000072341.1\|3344737_3345130_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.9e-69	96.9
WP_000780577.1\|3345126_3345522_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	1.0e-59	93.3
WP_000202148.1\|3345660_3347538_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	2.7e-299	80.2
WP_000921127.1\|3347561_3348029_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.5e-83	95.5
WP_000356366.1\|3348021_3348657_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.1e-114	99.5
WP_001271941.1\|3348653_3349235_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	3.3e-102	98.4
WP_000213444.1\|3349231_3349582_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	3.5e-59	99.1
WP_001111954.1\|3349585_3350482_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	3.3e-154	97.7
WP_000071703.1\|3350474_3351005_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	3.6e-92	98.2
WP_021538277.1\|3351007_3352993_+\|tail	phage tail fiber protein	A0A0A7NV63	Enterobacteria_phage	3.2e-173	86.0
WP_000972134.1\|3352995_3353529_+\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	4.2e-96	98.9
WP_001554335.1\|3353557_3354085_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	2.6e-90	93.7
WP_023363133.1\|3354086_3354872_-	hypothetical protein	Q858V4	Yersinia_virus	1.1e-108	76.6
WP_000905061.1\|3355102_3355702_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.8e-98	98.9
WP_000979945.1\|3355730_3356219_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_000853410.1\|3356231_3359039_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	90.1
WP_000333503.1\|3359025_3359181_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651577.1\|3359189_3359564_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.9e-36	71.5
WP_000290462.1\|3359619_3360132_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000005447.1\|3360131_3361316_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.4e-222	97.5
WP_000132830.1\|3361473_3362583_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.3e-195	94.9
WP_000488106.1\|3362623_3362884_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078916.1\|3363075_3363216_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_000886683.1\|3363521_3364814_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
3363480:3363499	attR	NA	NA	NA	NA
WP_000067797.1\|3364904_3366248_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|3366258_3366870_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077041.1\|3367028_3371135_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|3371269_3371764_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_001385255.1\|3372307_3373273_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.6
WP_001043561.1\|3373395_3375162_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001202204.1\|3375162_3376884_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.4e-20	25.0
WP_001241674.1\|3376925_3377630_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3377914_3378133_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000934041.1\|3378817_3381094_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_000520781.1\|3381124_3381445_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049079

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP049077

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection