CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049740	Jeotgalibaca arthritidis strain CECT 9157 chromosome, complete genome	3 crisprs	cas3,csa3,DEDDh,DinG	0	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049740_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049740_1

949984-950087

Orphan

Consensus_repeat	Method
TCAGATGCTCTACCAACTGAGCTAA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP049740_1

>merge|NZ_CP049740|1|949984-950087|CRISPRCasFinder
TCAGATGCTCTACCAACTGAGCTAAGCCGGCATTAAATGAGTCATGTAGGGCTCGAACCTACGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAA

>NZ_CP049740|1|1|949984-950087|CRISPRCasFinder
TCAGATGCTCTACCAACTGAGCTAA	GCCGGCATTAAATGAGTCATGTAGGGCTCGAACCTACGACCCTCTGATTAAAAG
TCAGATGCTCTACCAACTGAGCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049740.1\|WP_166161728.1\|945373_946549_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP049740.1\|WP_166161750.1\|961749_962082_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP049740.1\|WP_166161721.1\|941101_941983_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225306
NZ_CP049740.1\|WP_166161746.1\|959016_960690_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
NZ_CP049740.1\|WP_166161717.1\|939448_940012_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
NZ_CP049740.1\|WP_166161719.1\|940462_940987_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP049740.1\|WP_166161745.1\|957910_958981_+\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|223869
NZ_CP049740.1\|WP_166161741.1\|957182_957524_+\|arsenite-efflux-transporter-metallochaperone-ArsD	unknown	unknown	gnl\|CDD\|377741
NZ_CP049740.1\|WP_166161725.1\|943177_943891_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP049740.1\|WP_166161748.1\|960983_961535_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271192
NZ_CP049740.1\|WP_166161732.1\|949134_949599_-\|CtsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226869
NZ_CP049740.1\|WP_166161726.1\|944260_944746_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271155
NZ_CP049740.1\|WP_166161739.1\|956463_956952_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_166161743.1\|957538_957874_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NZ_CP049740.1\|WP_166161735.1\|955633_956116_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_166161733.1\|955453_955618_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_166161723.1\|942085_943057_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NZ_CP049740.1\|WP_166161737.1\|956127_956412_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_076768059.1\|944884_945238_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_166161730.1\|946594_949093_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616

Protein	Function_ID	Function_description	E-value
NZ_CP049740.1\|WP_166161728.1\|945373_946549_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	6.02919e-70
NZ_CP049740.1\|WP_166161750.1\|961749_962082_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	7.06461e-19
NZ_CP049740.1\|WP_166161721.1\|941101_941983_+\|hypothetical-protein	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	3.58399e-13
NZ_CP049740.1\|WP_166161746.1\|959016_960690_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	2.08826e-136
NZ_CP049740.1\|WP_166161717.1\|939448_940012_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	0.000350768
NZ_CP049740.1\|WP_166161719.1\|940462_940987_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.41691e-68
NZ_CP049740.1\|WP_166161741.1\|957182_957524_+\|arsenite-efflux-transporter-metallochaperone-ArsD	gnl\|CDD\|377741	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs.	1.2835e-46
NZ_CP049740.1\|WP_166161743.1\|957538_957874_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	2.66304e-23
NZ_CP049740.1\|WP_166161748.1\|960983_961535_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271192	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.01619e-49
NZ_CP049740.1\|WP_166161732.1\|949134_949599_-\|CtsR-family-transcriptional-regulator	gnl\|CDD\|226869	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription].	4.1442e-59
NZ_CP049740.1\|WP_166161726.1\|944260_944746_-\|hypothetical-protein	gnl\|CDD\|271155	cd14489, CBM_SBP_bac_1_like, Putative Carbohydrate Binding Module (CBM) of extracellular solute-binding protein family 1. Domains in this family co-occur with extracellular solute-binding domains which are periplasmic components of ABC-type sugar transport systems involved in carbohydrate transport and metabolism. Carbohydrate binding modules of family 6 (CBM6), also known as cellulose binding domain family VI (CBD VI), and related CBMs (CBM35 and CBM36) are non-catalytic carbohydrate binding domains found in a range of enzymes that display activities against a diverse range of carbohydrate targets, including mannan, xylan, beta-glucans, cellulose, agarose, and arabinans. These domains facilitate the strong binding of co-occuring (catalytic) modules to their insoluble substrates.	3.75781e-08
NZ_CP049740.1\|WP_166161725.1\|943177_943891_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	4.94942e-73
NZ_CP049740.1\|WP_166161723.1\|942085_943057_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	8.00542e-85
NZ_CP049740.1\|WP_166161745.1\|957910_958981_+\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|223869	COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism].	1.95521e-107
NZ_CP049740.1\|WP_166161730.1\|946594_949093_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0

>NZ_CP049740.1|WP_166161732.1|949134_949599_-|CtsR-family-transcriptional-regulator
MQNQNMSDIIEAYIKQILNTEEQVEIRRNEMATHFNCVPSQINYVINTRFTEQHGYLVESKRGGGGYIRIMKVKFLEEVDLLNEMIRIVGNSISERDAYAVVQNLYNQKIISKREGNLILAVMDKAFLQALQENEDAVRAGLLKKLLTSLRYEA
>NZ_CP049740.1|WP_166161730.1|946594_949093_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MDELFTQKASRALSLATEEAHYFKHQTIGTEHILLGLIRETEGIAGKVLRSFHIDEAIIRDEVEHLTGYGTARPLANQFAPMPFSPRAKKVMMYATAESQKLGVPQVGTEHILLGILREEILAVKILKNIGVDLNQLQRTLYEKIGLKDVPKSATKGAKKAQKAAEGTPTLDALARDMTDLARSGRLDPIVGRDREVKRILQVISRRTKNNPVLVGEPGVGKTAIVEGLAQKIVNGEVPETLANKRLMMLDMGSLVAGTKYRGEFEERMKKIIDEVYHDGNVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQTIGATTLDEYQKYIEKDAALERRFAPITIDEPTAEETTQILKGLRSRYEEHHHVEITDEAIEAAVALSVRYITARRLPDKAIDLIDESAAKVRLDVTHGDTPAGKLEDEIERLAQEKEEAILAQDFEKAARIRKKELSRKQRLEKVRAQSSTQDEGHYTLSVDETDVAQVVALWTGIPVYQMEQKESDRLMKLEKVLHERVIGQETAVSAVARAIRRARSGLKDPARPIGSFLFLGPTGVGKTELAKTLAEAMFGEEDALVRIDMSEYMEKFSTSRLVGSPPGYVGYDEGGQLTEKIRQKPYSVILLDEVEKAHPDVFNILLQVLDDGHLTDSKGRKVDFRNTILIMTSNLGATALRDEKMVGFNAKDAKHDYTAMEKRIREELKNSFRPEFLNRIDESIVFHSLGEKELSEIVKLMANNIVKRLEDLDIHVKVTPAAIQVIAKAGFDPEYGARPIRRAIQKEIEDRLSEEILSGAIKYGDHVMLGARNGTIRMTVKEKKETPIMEEKGELVNN
>NZ_CP049740.1|WP_166161728.1|945373_946549_+|cation-transporter
MLTKWLQRYLSKKVKTDNRVQLGILSGKVGLASNLVLFAIKLLAGVLSGSISIITDAMNNLSDTASSILALFGFYAAAKPADQEHPYGHERYEYISGLLISLVIIFVGGQFLVSSIDRIIHPGTLKMNPLIVILLLFSIIAKLFQGKFYQVIADAIHSNTLKGVAQDSFNDVYSTIVVLLASLVEYWLDWKVDGIAGAVLAVFIIFSGLQMIHHSINDLLGIRPDEDAIRKMIGLLDQYEMIVGYHDLLVHNYGPNQTHATIHIEIDDSWSLSRAHQLIDQIEKRFLEELDVELVCHVDPIAIQNERHTKVYQQIKAILKSYSMNLKFHDFRIVENNDRPLMQFDIVVPSSSSETNETLLKSITHDIHTQIGDYDVEIDFDRLYILEDVQK
>NZ_CP049740.1|WP_076768059.1|944884_945238_-|hypothetical-protein
MSMKNSKKALLVGLAATAAVAAVAAVVAYEEDTVDRIGSYINRHRVKSFVKNKFKGSAKVLKAVDAMSDREIDTLLKIFDHTGNWKDAALDAFSDVKDKASDYKGNVVDTVEDIFNK
>NZ_CP049740.1|WP_166161726.1|944260_944746_-|hypothetical-protein
MEEFEAELDAYTTVENYQSYITNHLLDGHAVPEIRIPATDFSRAEGMDTTILTDYEGVSGDALLVDEAGLVEYEFEVAESGLYQIYLHYYPVEGNSAAIQRSLFIDSELPFSEFQLVEFPRIWVNKMNQWETDNQGNDIRPSQIEEAEWLMAWVCRAKSAI
>NZ_CP049740.1|WP_166161725.1|943177_943891_-|GntR-family-transcriptional-regulator
MQKYVLISNDIRDKIMTGVYAINEQLPSEKEMCVDYGVSKMTIKRALDILVAEGLVIKRRGSGTFVKDLGESQMKHIHMANQFRGMSAMNQDKAISSNVLNFSVRTASPEIASQLNVTEGSFIYDVYRVRLVDGTPRVIEQTYMPIDVIPSLKMEHVQSSIYNYIESELKLVIQSAHRTVSVRKATDFEAEKLGLEKGDPVAVAEQVGYLNTGEAFELSTSVHRYDFYAVQMIFTRN
>NZ_CP049740.1|WP_166161723.1|942085_943057_+|threonylcarbamoyl-AMP-synthase
MIEECIQLQIDQAIDALAEGEVVVFPTETVYGIGVDSTNYEAVDRLFEVKQRPKDNPVTLHVSDVDMVKAVAYVTDDAQTLMADFWPGALAIILEVKENTVSPNVNAGKKTVGFRLPDNDIAKQLIAGLGKPVAGTSANVSGQLSSTSFKQVTEYFQDNVAAFIDGGPSQIGIESTVIDLTTDVPTIIRPGSITKEQIEQSIGKSIAEKTSDIAQKYAHYTVESDVLYGSASDILASIDLLKEKNFGVLASESTINQLPAELAEKSLAISDDIQEALSQLYSSIAEMNTHPDINGFVLETRLNDDSAFNNRVISVAQNQALLH
>NZ_CP049740.1|WP_166161721.1|941101_941983_+|hypothetical-protein
MIEDLLEDLFPELIINHSSRMGDGYFSVPYEDNWLHFPADSISDREKKLIVQLTTPEVIHFKKQTNRWARFLLEQSSDIPTNANKVQLLQVSIKHADDDSFDYQLWLDAFKNTLSFVKDGFFITETYGVLVIDNPSHIDLLEEIEGILNVLDDDFTVQTTVYLGQNWPVDNQLPALFAEEQQIFMNRRSHYQHKKIATLAEHAITYFTYEAASKSTILHHLKEAIFAIDGGNELVMAMWQNLGNISKAANDLYVHRNTLQYRIDRFFQETGVNLKTMDDLLLSYLAIHARFEK
>NZ_CP049740.1|WP_166161719.1|940462_940987_-|nucleoside-deaminase
MNQEEKEGFMREAIKEAEKAKQLGEVPIGAVVVLDGEIIGRGHNERETTHDATTHAEMSAIRQANHHLKNWRLEDASLFVTLEPCPMCSGAIILSRVKEVYYGAADLKGGTAGTLMNLLEDERFNHQSQVEVGILEAECKALLQDFFRNLRKQRKEERRNHLKRVHQQQLENES
>NZ_CP049740.1|WP_166161717.1|939448_940012_+|hypothetical-protein
MTYFIKGPYTTVTEVRDAITQLQKEGYPDSSLTIVADKKDHLLQIQKETHVAVRQDDLADLTEEKDLPLWERFAHTFTGFFTNQDTIDRESQMEMDEDREESPDELLLPYHRDLEDGKILILVEDLLNRDAKLNLDRQPDDVQYNVPPSDAMIDATFETESHPDVTHKEDVLDEETTYTPPSEGDRH
>NZ_CP049740.1|WP_166161733.1|955453_955618_+|hypothetical-protein
MINFELKKRTYVEQRESANLIEEEKREAIKTEKRLKQEQVEAQEEQELLEFFAE
>NZ_CP049740.1|WP_166161735.1|955633_956116_+|hypothetical-protein
MKKWRITIMTGMTFLLTACGGFNPETALNDSREQLNTFFTSHEDKEIVADYTQESVLTFLEGDLSEYFSDNFKEEISGLVEKIPFEETTLDPIPNKIDFLDDSNNQILWTKYVIDDYEIDSDNKQVIFEVSSEEFGMHSNDLKITMYQDNGNWKIFSISE
>NZ_CP049740.1|WP_166161737.1|956127_956412_+|hypothetical-protein
MGDKILRMFQEWVEDGTTIIFNILSEFIFGYEGLNGFATNLYGVLVFFGGILLVVMVLVKIIIYQLSEAEGSTEADIWSIIIEIMKSSSMVLIL
>NZ_CP049740.1|WP_166161739.1|956463_956952_+|hypothetical-protein
MFGSIGILTIEDLKSLQDSEKFVQIFNTTFSTLVASTLIMVVIGVFLVKVCIVHAELLILELTSVFAAITIINDEYNYMGIWWREFLSQIVTLLLEIVSMLLFTQILMSDDFNWVKLAGLIGMGFVIIKGPSVAKSMWFTTGSGRSTISGAKMVASAAIRRR
>NZ_CP049740.1|WP_166161741.1|957182_957524_+|arsenite-efflux-transporter-metallochaperone-ArsD
MNKLELFEPAMCCSTGVCGPSVDENLIRITAVMQHVRKVEGKQMVRYNLSANPNSFIRNEAVQQVLQEKGIDGLPVTVLNNDTIVKVGDYPTNQEIADWLGVSLEKTTASTVK
>NZ_CP049740.1|WP_166161743.1|957538_957874_+|helix-turn-helix-transcriptional-regulator
MTYESYAKIAKALSEPKRVKILDMLSCGEMCACDILEHFDFTQPTLSHHIKILTEAGVVTSEKKGTWHHYSLNEETAKQYIQETVHLLTHAADCICIKEGNKTDKTNLGVL
>NZ_CP049740.1|WP_166161745.1|957910_958981_+|ACR3-family-arsenite-efflux-transporter
MTTNSEKKHNKLAISIWEKYLSLWVGLSMIAGILIGYFLPGVPIALEGMTFYNVSIPTSILLWIMIFPMFLKIDFFSVVGALKKPKGIALTSFINYAIKPFTMFAIAAFFFYVVFNQWVSSELAGEYIAGAVLLGAAPCTAMVFVWSKLTNGDPAYTLVQVSVNDILILLLYVPIVSLLLGVTDIDVPMETLVLSLVLFIVAPLVAAIFTRNVVVNKKGKEYFENTFIGKFDGYTNLGLVLTLIIIFTTQGQPIIENPLHILLIAVPLIIQNILIYVIGYGGSKACRLPYNIAAPASMVGTSNFFELAVAVSISMFGLDSGATLVTVVGVLIEVPMMLLLVKFSNKTKHWFDGYEY
>NZ_CP049740.1|WP_166161746.1|959016_960690_+|FAD-dependent-oxidoreductase
MKIVIIGSVAAGTSVAAKARRNTEEAEIVVYDQGKDISYSVCGIPYQIGGEVESTDQLTPRNAAWFKKRYNVDIFTEHKVTKANHETKTLEVLNVVTGETKEDHYDVLVLATGASPFTPPPFNQNEYDNVFQVRNIQDNRDITAYLSLKQPKKAVVVGSGFIGLEMTEQLVHKGMEVTLVEMQDQVMPPMDADMAFRVEEHLRAHGVRLLLSDTVKTIDGKNSVKSVTTTKGETLEADIVFLSVGVRPNTELAKQMGVEIGTTGAIAVNKKMQTNVPDVYAVGDVAESFSVITGKPIYRPLGSTANKMGRIAGDVITGGNLEHRGVLGTGIFRLFDLHVGQSGLTEKEAIQEGYEYETLYNLKPDHAEYLGGQELTIKALADRKTGRVLGAQVIGKGGVDKRVDVLATAITFGAKAEDLFHLDLAYAPPFATTKDPVLYTGMALDNAIKRNPLMTPTKILAAQEKGEAIQIIDTRSKKDYEKSHVKGAVHIPLGELRIRAEELDKEVPTVTYCNKGVTGNAAQNVLINHGFKEVYNLSGGNKNYQSYVTMLDAKKTY
>NZ_CP049740.1|WP_166161748.1|960983_961535_-|tyrosine-type-recombinase/integrase
MGYNVQPLRSQQEINDFLFCLRRNKNAERDVFLFLIGINSGLRMSDIVKLKKKDVITSKKPRIVEQKTGKTRILYLSSLQDLIHGYTAPLDLEAYLFPSTKGGHLEVNTVYQMFQKVAKLLGRDDIGTHTLRKTFGYHYYKKTKDVTTLMEIFGHSSEKITKRYIGINEDEISETLLNFRLGF
>NZ_CP049740.1|WP_166161750.1|961749_962082_+|PadR-family-transcriptional-regulator
MDNKINSQMLKGILSGSILLLLYQEELYGYKLSEKLTKFGFTDIPKGTIYPLLLSLEKKELIKGTLRDSDTGPKRKYYSLTEKGLIEKNEFTVQWNKLKESVDNLVEGSE

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049740_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049740_2

1059540-1059613

Orphan

Consensus_repeat	Method
CACTCGACATAAAAAGTGAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049740_2

>merge|NZ_CP049740|2|1059540-1059613|CRISPRCasFinder
CACTCGACATAAAAAGTGAAAAAAGTGTCGAGTCGCGATTTTATTTGGCATCACTCGACATAAAAAGCGAAAAA

>NZ_CP049740|2|2|1059540-1059613|CRISPRCasFinder
CACTCGACATAAAAAGTGAAAAA	AGTGTCGAGTCGCGATTTTATTTGGCAT
CACTCGACATAAAAAGCGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049740.1\|WP_166161866.1\|1051863_1053015_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP049740.1\|WP_166161876.1\|1057464_1057905_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NZ_CP049740.1\|WP_166161890.1\|1066952_1067546_+\|chemotaxis-protein-CheC	unknown	unknown	gnl\|CDD\|381737
NZ_CP049740.1\|WP_166161870.1\|1055323_1055662_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234782
NZ_CP049740.1\|WP_166161874.1\|1056559_1057369_+\|protein-jag	unknown	unknown	gnl\|CDD\|224760
NZ_CP049740.1\|WP_166161878.1\|1059665_1059896_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_166161862.1\|1050240_1051362_-\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP049740.1\|WP_166161864.1\|1051358_1051607_-\|S4-domain-containing-protein-YaaA	unknown	unknown	gnl\|CDD\|379097
NZ_CP049740.1\|WP_166161872.1\|1055695_1056529_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|179508
NZ_CP049740.1\|WP_166161884.1\|1062214_1062658_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NZ_CP049740.1\|WP_166161868.1\|1053197_1054529_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NZ_CP049740.1\|WP_166161886.1\|1062672_1063158_+\|chemotaxis-protein-CheD	unknown	unknown	gnl\|CDD\|319352
NZ_CP049740.1\|WP_166161882.1\|1060397_1062185_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP049740.1\|WP_166161891.1\|1067561_1067924_+\|response-regulator	unknown	unknown	gnl\|CDD\|381097
NZ_CP049740.1\|WP_166161888.1\|1064193_1064970_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NZ_CP049740.1\|WP_076767859.1\|1055117_1055252_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NZ_CP049740.1\|WP_166161880.1\|1059997_1060207_-\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|281584
NZ_CP049740.1\|WP_166161170.1\|1057994_1059418_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP049740.1\|WP_166161889.1\|1064983_1066960_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP049740.1\|WP_166164086.1\|1063177_1064197_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828

Protein	Function_ID	Function_description	E-value
NZ_CP049740.1\|WP_166161866.1\|1051863_1053015_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	4.77741e-133
NZ_CP049740.1\|WP_166161876.1\|1057464_1057905_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	1.5829e-82
NZ_CP049740.1\|WP_166161890.1\|1066952_1067546_+\|chemotaxis-protein-CheC	gnl\|CDD\|381737	cd17909, CheC_ClassI, chemotaxis protein CheC, Class I. This subfamily contains Class I CheC proteins with phosphatase activity. The Class I cheC genes are generally found in firmicute and archaeal chemotaxis operons with cheD, usually translationally coupled. Class I CheCs interact with the CheD protein which is responsible for deamidation of certain glutamine residues to glutamates on the chemotaxis receptor proteins. This family contains two active sites with the consensus sequence ([DS]xxxExxNx(22)P), with four conserved residues thought to form the phosphatase active site. The C-terminal helix of CheC acts as a mimic of the natural enzymatic target of CheD, the alpha-helical receptors, and serves as the binding site for CheD. The CheC/CheD heterodimerization increases CheY-P phosphatase activity five-fold. Class I CheCs are involved in adaptation of the chemotaxis system.	1.17072e-54
NZ_CP049740.1\|WP_166161870.1\|1055323_1055662_+\|ribonuclease-P-protein-component	gnl\|CDD\|234782	PRK00499, rnpA, ribonuclease P; Reviewed.	2.89624e-56
NZ_CP049740.1\|WP_166161874.1\|1056559_1057369_+\|protein-jag	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	3.94435e-53
NZ_CP049740.1\|WP_166161884.1\|1062214_1062658_+\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	1.78013e-19
NZ_CP049740.1\|WP_166161862.1\|1050240_1051362_-\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	7.04684e-157
NZ_CP049740.1\|WP_166161864.1\|1051358_1051607_-\|S4-domain-containing-protein-YaaA	gnl\|CDD\|379097	pfam13275, S4_2, S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4.	6.7538e-28
NZ_CP049740.1\|WP_166161872.1\|1055695_1056529_+\|membrane-protein-insertase-YidC	gnl\|CDD\|179508	PRK02944, PRK02944, YidC family membrane integrase SpoIIIJ.	1.15626e-82
NZ_CP049740.1\|WP_166161868.1\|1053197_1054529_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP049740.1\|WP_166161886.1\|1062672_1063158_+\|chemotaxis-protein-CheD	gnl\|CDD\|319352	cd16352, CheD, chemotaxis protein CheD stimulates methylation of methyl-accepting chemotaxis proteins. This family contains bacterial chemotaxis protein CheD that stimulates methylation of methyl-accepting chemotaxis proteins (MCPs). The CheD chemotaxis gene is not found in the Escherichia coli genome, but is present in many other organisms, including B. subtilis, where CheD appears to have two separate roles; it binds to chemoreceptors to activate them as part of the CheC/CheD/CheYp adaptation system, and it deamidates selected residues to activate chemoreceptors, enabling them to mediate amino acid chemotaxis. CheD has been shown to catalyze amide hydrolysis of specific glutaminyl side chains of the B. subtilis chemoreceptors McpA, McpB and McpC; deamination by CheD is required for the chemoreceptors to effectively transduce signals to the CheA kinase. CheD's ability to bind the receptors is controlled by CheC via a competitive binding mechanism; substituting Gln into the receptor motif of the signal-terminating phosphatase, CheC, turns the inhibitor into a receptor-modifying deamidase CheD substrate. Also, CheYp increases the affinity of CheD for CheC, controlling CheD binding to the receptors through its interactions with CheC. Thus, high levels of CheYp means CheC is a better binding target for CheD than the receptors, resulting in decreased CheA activity. The CheD structure reveals a distant homology with a class of bacterial toxins represented by the cytotoxic necrotizing factor 1 (CNF1) as well as a class of proteins of unknown function represented by B. subtilis YfiH. An invariant Cys-His pair forming a catalytic dyad is observed, and is required by the toxins for deamidation activity.	8.20647e-62
NZ_CP049740.1\|WP_166161882.1\|1060397_1062185_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.62596e-54
NZ_CP049740.1\|WP_166161891.1\|1067561_1067924_+\|response-regulator	gnl\|CDD\|381097	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY. The chemotaxis response regulator CheY contains a stand-alone REC domain. Chemotaxis is a behavior known for motile bacteria that directs their movement in response to chemical gradients. CheY is involved in transmitting sensory signals from chemoreceptors to the flagellar motors. Phosphorylated CheY interacts with the flagella switch components FliM and FliY, which causes counterclockwise rotation of the flagella, resulting in smooth swimming. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.09428e-56
NZ_CP049740.1\|WP_166161888.1\|1064193_1064970_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	9.69473e-75
NZ_CP049740.1\|WP_076767859.1\|1055117_1055252_+\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	2.33775e-09
NZ_CP049740.1\|WP_166161880.1\|1059997_1060207_-\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|281584	pfam03601, Cons_hypoth698, Conserved hypothetical protein 698.	1.86422e-08
NZ_CP049740.1\|WP_166161170.1\|1057994_1059418_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.1019e-43
NZ_CP049740.1\|WP_166161889.1\|1064983_1066960_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP049740.1\|WP_166164086.1\|1063177_1064197_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	2.94188e-136

>NZ_CP049740.1|WP_166161170.1|1057994_1059418_+|IS3-family-transposase
MAVYSYEFKKKVVDAYLRGEGGYTFLAEKYGVKNRRQVLNWVHYYEELGDDGLKRSRKNENYSFEFKLGAVESYLTSEVSYQELALSLGINNNALIARWVNDYRAAGPDALRDKKRGRRAKMNSSGKAVNIQHQDDSAPVDTSTEHVKQLEAELLKLKIENAYLKELRRLRLEEEALLKKKRESSAASEEKFKLKDILAVVGFPKATYMYWQKRFDRDNPDKELEEKILKIHEDNKDYGYRRMRAELNNQGIHVNKKKVQRIMQKLNLQVTSFTRKSRKYSSYKGKVGIVAPNRIRRRFNTHIPHQKVTTDTTEFKYYEVDSKGHMTMHKLYLDPFMDMCNGEILSYGIAKHPTAKNVMDALDKAIEITSDCSYRRTFHSDQGWAYQMRAYSNRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQEIYYGVVYYSYEELKSEIERYINYYNEKRIKEKLGWLSPVQYRLSLQAA
>NZ_CP049740.1|WP_166161876.1|1057464_1057905_+|type-II-3-dehydroquinate-dehydratase
MKKVLVLHGVNLNMFGKRDPHHYGTESLDDINAAIQQLADELEVNVTVFQTNHEGEMVEQIHKAFDDQISAIVINAGAWTHYSYAIRDALAILTVPIIEVHMSHIHAREAFRHQSVFAEIARGQISGFGKDSYLLGLRAAVSAIDK
>NZ_CP049740.1|WP_166161874.1|1056559_1057369_+|protein-jag
MENEKIVVRDTTVDQAISKGLAQLNLGTHDVDIKIISEGKKGLFGFGQKDAEVEITPKQLPEMKEPGNISVFENEERADYISDHQTEENLDSEEDNYEYTDTIAYETVDEDEEFPAESNKEEAIQKVIDYLTTTVEVYGADAKVTAEETSQAITFNIESDKAGLIIGKHGKIINALQTLAQTVYQQNERKRASVIVNVGDYRERREKILENIADRTAERVLRTKQPVFLEPLPAFERKQIHARLSKNDRLSTHSEGKEPHRYLVVEIAE
>NZ_CP049740.1|WP_166161872.1|1055695_1056529_+|membrane-protein-insertase-YidC
MSKRKRLLFTLSLLAVMMVLSACGSTEAITSESTGFWDGMIIYNFSRMIIWLSNMFFGSYGMGIIVFTVIIRVILIPLNYFQTKSTRKMQDVQPQIKALQEKHSSKDTETKELLQAEISRVYAENDVNPYMGCLPALVQMPVMIALYQAISRTEILRSSSFLWMDLGSRDPYFIFPILAAILTFYTSKLTMMTQPDGGGQGKAMMYTMPAMILFMGISLPSALSLYWTVSNAFSVGQTLIMNNPYKVINERKAEASKKRELEKALEKAKNPKKKRRK
>NZ_CP049740.1|WP_166161870.1|1055323_1055662_+|ribonuclease-P-protein-component
MRKSFRVKKEKEFQRVFHHGASKANRQFVVYVLPKEDQQHFRVGLSVGKKIGNAVTRNAIKRKIRQSLLELKPMIKPDIDFIVIARPPTAEMSTEEVKKSLIHVLKLAHVME
>NZ_CP049740.1|WP_076767859.1|1055117_1055252_+|50S-ribosomal-protein-L34
MKRTFQPKKRKRQTVHGFRKRMSTKNGRNVLASRRRKGRKVLSA
>NZ_CP049740.1|WP_166161868.1|1053197_1054529_-|chromosomal-replication-initiator-protein-DnaA
MEDIYSLWQYLQEKFKESLSKVSYDTWIDSAVPIRLTESNIIIEVPSSLHKDYWQNNLATRVVEGIYEFSGKEISPIFMLKNEDVPALKQEKTKNEAKVPFKQALLNTKYTFDTFVIGKGNQMAHAAALVVAEEPGTIYNPLFFYGGVGLGKTHLMHAIGHQMLQLRPNAKVKYVSSETFANDFINSIQNRTQEQFRNEYRSVDLLLVDDIQFFADKEGTQEEFFHTFNALYDERKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRIAILRNKANSERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFSAIQGKDISTSLAADALKSILPTDKPKALSIYTIQQTVAKFYHVTIEELKGKKRIKGIVVPRQIAMYLSRELTDSSLPKIGTEFGGKDHTTVLHAYDKISNSLAKDVTMKQEIDTIKETLKNM
>NZ_CP049740.1|WP_166161866.1|1051863_1053015_-|DNA-polymerase-III-subunit-beta
MKFNINRPAFIKYITDVQRAISSRTTIPVLTGIKMVADKTGLMLSGSDSDISIEIFIPIEDESNDLEIIKEGGIVLPARIFNDIVRKMSDEKLTIEVGDNLQTHITSANAAFKINSIDVESYPNFPTIDSNEVISLPTNLFKQVIQHTVIATSTQESRPILTGVNITIENGTLKAVATDSHRLSQRIIPINIPESLSENSYKVIIPGKSLIELSRIVEDQDTIDMMVTENQVLFKAENLYFYSRLLEGYYPDTNRLIPTTSSTNLVMNAADLLQATDRASLLSHEGKNNVVKLSISDEKVELSGNSPEIGTVREDLQYQEANGDPLVISFNPDYLKDALRTFGHQDVMVSFTAPIRPFTVVPVDNHTDIEQAFIQLITPVRTY
>NZ_CP049740.1|WP_166161864.1|1051358_1051607_-|S4-domain-containing-protein-YaaA
MKNIVYIDDDFITLGQLLKHVNVISSGGMAKWYLAEYAVMIDSEKENRRGKKIYPGSVVEIPDAGTFIVQRNNQATDDGSEL
>NZ_CP049740.1|WP_166161862.1|1050240_1051362_-|DNA-replication/repair-protein-RecF
MILKEITLRNFRNYSELSVPFSSGINVFLGENAQGKTNLMEAIYALSMARSPRTSNEKEMIQWQQEQAQITGKVEKRHADYPLELTFSKKGKIAKINHLEQKRLSDYVGTLNVVLFAPEDLELVKGSPNRRRKFLDMELGQMSHIYLHNLVQYQRLLKQRNTYLKQLLTRKVSDKVYLEVLTEQLATLGASIIEARLSFIKQLEKWADSIHHQISDEKEHLKIRYKSPITFEDNMTKDAIFLLLLEEQERVKQRELEQATTLFGPHRDDLVFYVNDKNIHQFGSQGQQRTTVLSLKLAEIECMKEVLGEYPILLLDDVLSELDDSRQTHLLKTIEKKVQTFLTTPSLDGVKRNKIEEPTIFYIEAGKVEKEGA
>NZ_CP049740.1|WP_166161878.1|1059665_1059896_-|hypothetical-protein
MAKEIVSLSNETSTAVESIELILNTVNESVLQIVDSINTMTDKINNQASVSEEINSTTDIINERANQLLTFIQHLN
>NZ_CP049740.1|WP_166161880.1|1059997_1060207_-|putative-sulfate-exporter-family-transporter
MFITILPGLLVSLFISLLSQFLTNFLPQLSAALIAILLGMLFGNTLFIHPRLNPGTQFAEKRLLEVAIV
>NZ_CP049740.1|WP_166161882.1|1060397_1062185_+|methyl-accepting-chemotaxis-protein
MDTTEKIKKDKQKFDWSKIKGKFQSEKFKRFGFNNQTIRVRLLLSFSIVIIFMSGLGIANFITFRSINNDIKKIVEEEFVIQQNYDKISYYMAQKISAVRGYLLTGRESYVVEFNNYKQWSAENEKIISNIDNSITNQNLFTSMATWDESVQTDIFDLVTEGDRAAAMFNMNGNVNPKGEQIISNLSGQATTKSAEIRLETNSLMKKITTSISTMIITIVVIIVLSVFVAIFFANHFSKAISKVVTRLKSIEEGQLNQELLEVEGAGELADLGHSANALQIALYEIMTVISLGAEDMTQQSEELSQSSNEVKAGSEQVAITMQELSIGTENQAHSASQLSANMEAFNHKFMDVSETTEKVTVYSEDVLTLSGKGKELMNSSSQQMEKINEIVQDATVKMTELDKGTKEITKLVDIIQNVSKQTNLLALNAAIEAARAGEHGRGFAVVAEEVRKLSEQVAASVKEITLFVENIHREANDVSASLQEGFREAEAGLVGIKETNLTFDEITHSLQSVVEHINGVSTSLNDLTETGKEMNHSISEIASVSEESAAGVEETSAASQQINSTMEEVAVNAGQIAKLAENLGEIVQKFQLYP
>NZ_CP049740.1|WP_166161884.1|1062214_1062658_+|chemotaxis-protein-CheW
MEQFILFEANTQKIALPIQVVERIIEFDKGIAIPDTSDYLMGLHRYNDENLVLIDMNMRLFKTPIQATEDSKIIVVDWKDKKLGLAVDQVTTVQRFESNPNQKQSDENKTKYIVETFQFNDEIILHLDVEQLFQDEASNEIMIVLAK
>NZ_CP049740.1|WP_166161886.1|1062672_1063158_+|chemotaxis-protein-CheD
MLEEAIKVGIGDYKVANAPQSLITVALGSCVGIALYDPISKVGGLSHIMLPDSTAFRGEKKVEKFADLAIPSLVEDLKKIGASSRLEAKIAGGASMFKLKNSIAREQIGQRNIAAVKQVLSDLKIPIIGEHTGEDYGRTMWLDLEDLSVTVRTAQREYLDL
>NZ_CP049740.1|WP_166164086.1|1063177_1064197_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MATRILVVDDSAFMRKILTEQISAINGFEVIGTARSGEDALNKMALLRPDIITLDVEMPGMNGLETVKRIREISDLPVFMLSSLQGKEITIAALESGATDFIEKPQNLRENAAEFQRQLAYHLKSVLQKDEDDSGAKKEFTPANEADIIDQAYKAIVIGASTGGPRALMQLVQAIPSTLAIPIFIVQHMPEGFTASFAKRLNDSAQVPVKEASHLEKIQAGTVYVAPGNYHMHIHQDELFLTQTEKRNGVRPAVDHLFESAAPLYKNRLLSVILTGMGKDGTQGMLAVKEAGGYTLAQNKESCVVYGMPGSAVDAGVVDVCVHLNCISDIINKVARTSK
>NZ_CP049740.1|WP_166161888.1|1064193_1064970_+|protein-glutamate-O-methyltransferase-CheR
MTLQFEKFYDWTKSELNLQLDGYKQRQLQRRITTIMKKSGATDLASYAEKIKNDAQIRNDFLDYITINVTEFFRNKDIFADFETVLTDELPQKFPELKIWSAACSTGAEAYSMAIALKKKNLDSRAKIIGTDLDLNILEKARKGIYRDADVKNVEAVDLQRFFKADEPFYHLSDDIKKLVEFKKHDLIVGKYDKGYHVILCRNVTIYFNDEVKDDLYQKMSDALVPGGIFFIGATETIYNPAKYGLRKIGSFLYEKIE
>NZ_CP049740.1|WP_166161889.1|1064983_1066960_+|chemotaxis-protein-CheA
MDDNSQYLDMFYEETDDNLMKLNDLVLDLEHNPTDLSIVDEIFRSAHTLKGMAATMGFTTMTEVTHKLENVFSFLKEKNQAANETIITIVLKSLDALAEIMDRIRAGESDSGDYSDIIAMCDKVTSEGATANQPTEAAVEAAIVSTMTLDDSDWEVAKSAQKDGYKAYTIAVKIESDSMMANARAFLVMSKLEEFGEIIKTEPSPDVLETDDFGHLFKCLYFSEIDEASIVETIKQISEVETVVINKLQKEETTVKKEEQNTQVTTKKAAANHQPNHSIRVDIDKLDSFMSLVSELVVYRTQLEDISQKTGNQQLEETLTYVSRITNELQSLVLNIRMQPLQTVTNRFPRLVRDLSSDTGKPMDLVIEGDDTELDRTIVSELGEPLIHLIRNSADHGIENPERRLELGKDVRGTIKISAYQEGNRVLISVSDDGKGLDAEAIKASAERKGISTEGLTTQEIQELIFHPGFSTKQEVTKVSGRGVGMDVVKTKIQELGGSIDIVSEADKGTIFRLSLPLTLSIIPALLVKVEEHILAIPLSVINKVVRMDVDAVKQTHNGEILMAGDKGIPLIRLEKQLQLADDNDEASHVIIVTIEGKQYALAVDAIVRQQEIVIQELGPEVGQDAPYLGAAIMGDGSMTLILDITAICLERNRMLNV
>NZ_CP049740.1|WP_166161890.1|1066952_1067546_+|chemotaxis-protein-CheC
MSEKYTANQLDILKEMLNIGGGNAATSLSKLLDKTVNMRVPVLERMAYEAVFEQIMSADTVVRAVQMQSAGDIEGMFLFVLSDLGFNDITRELLRGYEDKEDLAESAVCELVNILVNTFVQAISTLLDLKVQTDVPYIMEDMFGSLLTSAYLEELQYDENLWIFKNEYLIEGIKWESSLYFVPQNGMLEKLMTEIKF
>NZ_CP049740.1|WP_166161891.1|1067561_1067924_+|response-regulator
MAKNILIVDDAAFMRMKLKDILEKNGYNVVGEAQNGLEAVSLYKEVKPDLVTMDITMPEMDGIEALKEIKAVDPAAKVIMCSAMGQQGMVMEAIKMGAIDFIVKPFDTARVIKSLSKVSL

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Crispr_ID: NZ_CP049740_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049740_3

1142180-1142255

Orphan

Consensus_repeat	Method
ATTTTGGGCTCAGTCGACATAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049740_3

>merge|NZ_CP049740|3|1142180-1142255|CRISPRCasFinder
ATTTTGGGCTCAGTCGACATAAAAAGCGGAAAAAGTGTCGAGTGGGCATTTATTTTGGGCTCAGTCGACATAAAAA

>NZ_CP049740|3|3|1142180-1142255|CRISPRCasFinder
ATTTTGGGCTCAGTCGACATAAAAA	GCGGAAAAAGTGTCGAGTGGGCATTT
ATTTTGGGCTCAGTCGACATAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049740.1\|WP_166162009.1\|1143418_1144921_-\|DUF1538-domain-containing-protein	unknown	unknown	gnl\|CDD\|377867
NZ_CP049740.1\|WP_166162019.1\|1148220_1148424_+\|DUF951-domain-containing-protein	unknown	unknown	gnl\|CDD\|377606
NZ_CP049740.1\|WP_166162021.1\|1148460_1149561_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP049740.1\|WP_166162015.1\|1146557_1147322_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_CP049740.1\|WP_166161997.1\|1132710_1133916_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_166162001.1\|1139579_1141043_-\|glucuronide-permease	unknown	unknown	gnl\|CDD\|225121
NZ_CP049740.1\|WP_166162007.1\|1142370_1143426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198006
NZ_CP049740.1\|WP_076766430.1\|1136136_1137495_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
NZ_CP049740.1\|WP_166162003.1\|1141260_1141605_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_166162013.1\|1145631_1146348_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP049740.1\|WP_166162011.1\|1145164_1145620_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_166161993.1\|1130620_1131523_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP049740.1\|WP_166162005.1\|1141607_1142045_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP049740.1\|WP_166162017.1\|1147311_1148202_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP049740.1\|WP_166161999.1\|1134281_1135997_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP049740.1\|WP_166164096.1\|1134041_1134254_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049740.1\|WP_166162023.1\|1149586_1150279_+\|DUF1129-domain-containing-protein	unknown	unknown	gnl\|CDD\|368981
NZ_CP049740.1\|WP_076766434.1\|1137649_1138405_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
NZ_CP049740.1\|WP_166162025.1\|1150515_1152000_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP049740.1\|WP_166161995.1\|1131519_1132698_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049740.1\|WP_166162009.1\|1143418_1144921_-\|DUF1538-domain-containing-protein	gnl\|CDD\|377867	pfam07556, DUF1538, Protein of unknown function (DUF1538). This family contains several conserved glycines and phenylalanines.	2.20841e-62
NZ_CP049740.1\|WP_166162019.1\|1148220_1148424_+\|DUF951-domain-containing-protein	gnl\|CDD\|377606	pfam06107, DUF951, Bacterial protein of unknown function (DUF951). This family consists of several short hypothetical bacterial proteins of unknown function. Structural modelling suggests this domain may bind nucleic acids.	1.49273e-29
NZ_CP049740.1\|WP_166162015.1\|1146557_1147322_+\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	1.09969e-96
NZ_CP049740.1\|WP_166162013.1\|1145631_1146348_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	2.17703e-95
NZ_CP049740.1\|WP_166162025.1\|1150515_1152000_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP049740.1\|WP_166161993.1\|1130620_1131523_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.68968e-54
NZ_CP049740.1\|WP_166162007.1\|1142370_1143426_-\|hypothetical-protein	gnl\|CDD\|198006	smart00938, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	6.66545e-05
NZ_CP049740.1\|WP_166162021.1\|1148460_1149561_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP049740.1\|WP_166162005.1\|1141607_1142045_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.91846e-16
NZ_CP049740.1\|WP_166162017.1\|1147311_1148202_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.6936e-83
NZ_CP049740.1\|WP_166161999.1\|1134281_1135997_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP049740.1\|WP_166162001.1\|1139579_1141043_-\|glucuronide-permease	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	8.70406e-36
NZ_CP049740.1\|WP_166162023.1\|1149586_1150279_+\|DUF1129-domain-containing-protein	gnl\|CDD\|368981	pfam06570, DUF1129, Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function.	2.36352e-50
NZ_CP049740.1\|WP_076766434.1\|1137649_1138405_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	2.97009e-09
NZ_CP049740.1\|WP_076766430.1\|1136136_1137495_-\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.10219e-66

>NZ_CP049740.1|WP_166162005.1|1141607_1142045_-|helix-turn-helix-domain-containing-protein
MTHFSEKIYQLRKEFSYSQEEVAERLQVSRQTISNWENGTAQPALDKAVELSNLFQVSLDELVGKIVGKSKPISPLLSDLVGQTITIFLVPSSDAWISVSRTEVTACEVIAVSEHSLKVIVSEKKQRIERVFMLRDIVGMKQEVV
>NZ_CP049740.1|WP_166162003.1|1141260_1141605_-|hypothetical-protein
MWLFIIVIAIMVFTRLDDLIELFKSKDPNYQEDKQKEALEQLQQIEERRERLKSLIGLDCQIESLEFYLMSLPGTMAVTIQAVDQEWVKMTIKQKKPFDLIMKVADITAVSRIL
>NZ_CP049740.1|WP_166162001.1|1139579_1141043_-|glucuronide-permease
MSEFKDGQASRYHQAKQWEIAFFSLNNSATNLYLFAFGFLTYYATGIAGFATLLVSNLLGAARLFDGIIDPTIGIVMDKFNTRWGKFRPLMLVSNIGLILSFLLLFSTHRLSGAAQVVVFLIALVFHKIVYSFQQTVTKAAQPALTNDPTQRPLFSIYDTVFSSIGVFAMGQVVVSNFLAPRHNGEFNQAFFTEFLTGIMILSAVLTVLAIIGISRKDRTEYFGLGEDTVETKSLQDYLSVIKGNTPLITLAICGGLMKFIAQLLSDQAFLVILFGIILGNYGLSGQLSLWQIVPNLIVVVLFTRLATRRDLKTSYTVSILIAMTAMLVMLAILWTSGDPTQIFGNGGLLPIVFGIAYIAMKISSTYPNSIVLTMSADISDFETSRSGRFVSGLIGTVFSLTDSIASSLAPIFIGFIVAGIGFKEAYPDASEPLTDNLFNGGLILLGIPLILYIFVFILIRKYPLNREAMDKVQLAISEKKKDDLFK
>NZ_CP049740.1|WP_076766434.1|1137649_1138405_+|helix-turn-helix-domain-containing-protein
MRSNSKHTTEEIERYILMYLNEGISFKELKEAYGLLINWTSFWDKVLRYQEHGISGIQVKSKSNKYSKEFKDLVVKEYLEDRLPIGQLAVKYNIPKVDTVRSWINKYTKGEEMRSYSPKSEVYTMTDKKSTQEEKIKIVQDCLANSLSYKKTAEKYQVSYNNVYSWVQKYKKHGPDGLVDGRGRGKPNSVQTEEERIRAENAALRARNEYLETENVALKKLEEVERELMSRKRGMKRNTKRSRNYKKKDTK
>NZ_CP049740.1|WP_076766430.1|1136136_1137495_-|ISL3-family-transposase
MTQIHCIKKMFGIKDPNIILEDIPVEFEKLNQINHMIIQGKLTYTPRCCVNCGVLNQSHQDIIKNGTKVSTIKLTHINFQPLLLRLKKQRFLCKHCHQTFIAETTLVERHCFISTIIKQTIAMELREIQSMTLVAQHLSVSTSTVIRVLRQVAKPLASKHLYLPQHLSIDEFKSVGAVSGAMSFLFIDAQNHRLMDVVEDRRKDHLIDYFLRYPKESRYSVKTVTMDMYSPYMAVVKTCFPNAQIVIDRFHIVQHLNRALNTHRIRVMNNLYSKRPRDYRKLKKQWKLLLKNDWELNVSDYRTHRLYDGLMTEKMMVDYLLSLDPQLRQVYMLVNHLRFALYQHDFEQFSTILEDTRQQILPRKIRTTVQTLVTHRVGISNACFYTLSNGAIEGINNKIKTIKRSGFGYRNYTNLRARILVSFRLTINHFEPKALRYQDEQARQKEKAKVRI
>NZ_CP049740.1|WP_166161999.1|1134281_1135997_-|ABC-transporter-ATP-binding-protein
MLKRFFSYYRPYKSLFILDFTCAVIAAILELAFPVAVNNVIDSILPSGKWSLVIIASLALLLLYVINTAMQYIVTYFGHKLGVNIETDMRQELFSHMQKQSFSYYDNNKTGKLMTRLTTDLFEISEVAHHGPEDIFITIITLLGAFLLMLQVHTKLAIATVCLIPLIMFAVSYFNRKMTKVNTRIYEDLGEFNAGIEASVSGIRVVQAFANEDHEAERFKFLNQAYRKSKLLFYKMMGLSSSYNYLIIRLINLFALFFGSYYTIQGELSYGDFVGFILLSNIFVRPIEKVNNMIELYPKGIAGFRRFAEEMDRPPLITDKVGAISVDGLKGNISYENVSFWYDESEKVLDNISLTIKAGETVAFVGPSGAGKTTLCNLLPRFYDIKEGQITVDGYNIQDVTMASLRNEIGVVQQDVYLFPGTIRENIAYGKLDASEDEIKRAAQLANLDHVIAAMPEGLDTVIGERGVKLSGGQKQRLSIARMFLKNPPILILDEATSALDTETEQVIQESLDSLAVGRTTLIIAHRLATIKHATRIVVVDETGISEQGTHDELMAINGTYRRLYEAQFLD
>NZ_CP049740.1|WP_166164096.1|1134041_1134254_-|hypothetical-protein
MTFFDWTFYYPDHFRIYSDLEEKRIAFLTAGDDEIHLTLEVVDNQLVFHPRWNVNVIVLGDKEFRITTND
>NZ_CP049740.1|WP_166161997.1|1132710_1133916_-|hypothetical-protein
MVIAVFKETWRHLIRHKKNRLVFVLALIGMVVYSGFLLPHQDDIHTIDLDKLEMSIHANKGIMDTAAEKENFSVNLFTGRSAYVDGKLKYENSRALLNAIENGDVSRYLAISRQYVPDFHKDKQTEFYQKKSLFPDKDFFFDSMMYSKRLESYPAEDLSFHVVQEKTAWQQIQVFLSKWGPTVLVTLTLFIACDVFVLGIKKRTQHIGVPIAWGSYLFIQSLAIIVFILVMLSTLAASFFIINGILYGFGSLNWPVVLFNYSEDFFFSEVSPFTLVSIGSFLAQALPFLIVFIYFFTRLSAFWSLIFKQEVVVFLAGLFTLLFEKLYFSRTTRDLLGIDISYFPQTYFDFGKVMTGEKNYLLNTSTVTAGRGIVVVLVAVVCLELLLALAARLRTRQTFIG
>NZ_CP049740.1|WP_166161995.1|1131519_1132698_-|hypothetical-protein
MHLAKWEWKKIMRDWKTRLLLLGFFLFFSSFSLLYKQQTLTFPEAEMNEQYQTIHQLFNSIPESVFTGEDGKDVYDTMAKQQMLYGMQLYILSKRDGNEIKGLEHVFDSYLENGVNIARNNAYLLELDQFEYYAYLISYLPDETDIYRDLAFFNYMDEKGIDIEWNAFSASTILVEEVNMMIGLVLFLFVALLACDSFSRDQLKNWSITHGLPVHWKKQWRLRSLQLWLLMWAASLLGLATSYIISLIMETSGSLIYPIMINWQGGYLPIPVWQYVCLALAFAMMVSFVLMLLATGLSWIFRTIYLTIVTIVALFFLPSLWTVIQPLSSWQPSLYFHIEDVFTSDTFAQLGVNIWKGPIVMIGLVVIIELIFHVVFDHIQTQTLGLKRRTSQ
>NZ_CP049740.1|WP_166161993.1|1130620_1131523_-|ABC-transporter-ATP-binding-protein
MTLSIADLTVQYGDRTILNQISFDIEKASIIGLVAPNGTGKTTLFNAIMRYIPIKGGSITIDGKTYSNSRKDILKLHQQVTFFPDQADLYENFSGREHIQMYADIWQKKAGQTVDQIIDRLHMNHYVDRHVHTYSLGMRQRLCFAMMCAADTPIMLMDEVMNGLDPENVNLVSSVLNHLRSEGKIIMVASHLLDNLDEYADKVYFLEDGKFVYISDHHQEKDQYVKAKLAKVDYDRLLPLPEGSLYLDNNLCCIPVKNDQEALHYVSQLRHYKVEQLSVGPLGTADHYIRIYDFTTENKE
>NZ_CP049740.1|WP_166162007.1|1142370_1143426_-|hypothetical-protein
MNKEMLSQTSLSELDQNYTLLTVIVNQNKAEKITQYAKRIGIKRYTSFRGKGTATSAILQMLEISDINREVIIFIIPTVQVDEMMAKLTEKFHFEKPSQGILFTVKLSHVLGITHKAPENSLPDTNLHTDLIGMCTIVDKGLASDVLDVCNRDSFLGGTILPAHGSARESVKIFNFAIEPEKELVLMLIPVNKANDMKNRLVEKLNLKDKNSGIFFTFAIDQVRGLKKKEGYEDSEHDIKERLADWEHEEAHYDAIWTIVPEGYDGDVVRAAEKGGSQGATILSARGAHVRDHSLMIADIEPEREVVIVITKRDATYDICKEINEKFRLDDPGQGVVFVFPIHEPVGLLNK
>NZ_CP049740.1|WP_166162009.1|1143418_1144921_-|DUF1538-domain-containing-protein
MNALTEKFREIAIGVLPIVGTVLLLHFFVTPLEGVILGRFLLGSALILIGMPLFLLGVDISISPIGEDMSHSLIQTNKMKIVVLGSFLFGFIISVAEPDLHILAKQVSVVTNHLIPQMLLVIVVSLGIGLLIALGMYRILKRIPLNRFMTIIYGLIFILALFSSGDFLAIAFDASGSTTGSVTVPFMLAMAAGASAITRSGSQEDSDSFGLLGIASSGAIVGVLLMGIIGGKGELTGALPLDEVASVSVISAFTQMIPSTAMESLLSLLPVLALFLIINAISLKKKKRELQRIAVGLFYTVVGLILFLTGVNAGFMDASRRLGFLLAENHSAFFVILVGAVFGVLTIPAEPSVYILNKQIERETTGAIKSRTVMISLCIGVGAAVGLSILRIMVPALQLWHILLPGMIIAIVLSYFVPDIFVGIAYDSGGVAAGTMTATFILPYTQGIAESYPMANVLTDGFGVIALVAITPIITVQLLGWIYRLRTKNDHKKTEGEVYE
>NZ_CP049740.1|WP_166162011.1|1145164_1145620_+|hypothetical-protein
MILQKKNVFILTLLLLLAFLSACQKTVDLEPSSYQDSDLNQLDGVTMLVTPTEHPVTTESIALTIKNESNEEHSYGVEFKLEKEIDGEWYEVPFEGEVSWIMIAYILEANSENNETISFDLLDKNTLTEGNYRLIKQISGQAISAAFTLTE
>NZ_CP049740.1|WP_166162013.1|1145631_1146348_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MNPEQFKDALAKAGVNLNDQQMVQYQRYYELLVEWNEKINLTAITEKEEVYLKHFYDSVTLGLHVEAFQTPISLCDVGAGAGFPSIPLKIAFPEIKVTIVDSLNKRIQFLQLLIDELGLSGVSCFHDRAETFGQNPRFRAQYDFVTARAVARMSVLSELCLPLVKKGGYFVAMKAASSQDELDDAKKAIATLGGKIEEDYAFELPLDAGERHIVMINKTKETPKKYPRKPGTPNKSPL
>NZ_CP049740.1|WP_166162015.1|1146557_1147322_+|ParA-family-protein
MARIIAVANQKGGVGKTTTTVNLAAALAYSGKKVLLIDSDAQGNATSGLGISKADVDKDIYDVLVNQISIADAVQPSSRENLWVVPATIQLAGAEIELTNQPHREARLSKALADLKDDYDYIFIDCPPSLGHLTINAFTASDAVLIPVQCEYYALEGLSQLLNTFRLVQKHFNKDLKIEGVLLTMLDARTNLGFEVVEEVKKYFKEKVYKTIIPRNVRLSEAPSYGQSIIDYDIRSKGAEVYLELAKEVLADGE
>NZ_CP049740.1|WP_166162017.1|1147311_1148202_+|ParB/RepB/Spo0J-family-partition-protein
MANKNSKGLGRGIDALFSSFEDIEQIDEKTEQVQEISLDDIRPNPYQPRKTFDEEALKELADSIQLNGVFQPIILRQSSVKGYEIIVGERRVRASRLAGKESIPAIVREFDEQAMIEIAVIENLQREDLSPLEEAEAYQMMSDKLKLTQAQVAERVGKSRPYIANYLRLLTLPEDVKVLLRNGDLTMGQARTLLGLKDQKQMSELAKRVVQDGITVRQLEQLVQQMTEPTETKEKKKRQKIAKPSYILESEERLMDRFGTSVQITPKGEQGKIEIEYLSPNDLDRILELLNVEFDD
>NZ_CP049740.1|WP_166162019.1|1148220_1148424_+|DUF951-domain-containing-protein
MNHKEYDLHDVVEMKKPHPCQSNSWEIIRMGMDIRIKCQKCGQMVLMPRRDFEKKMKKVLIKAAVAE
>NZ_CP049740.1|WP_166162021.1|1148460_1149561_+|redox-regulated-ATPase-YchF
MSLTAGIVGLPNVGKSTLFNAITKAGVEAANYPFATIDPNVGVVEVPDSRLNKLTELVKPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIRQVDAICHVVRCFEDENITHVSGKVSPLDDIEVINLELILADLESVDKRHTRVSKIARTKDKEALQELAVLDKMKTALEAGKPARTVEVTPEEEVIVKGLFLLTTKPVLYVANISEEDVMAGEDNDMVKEVREFAASEGAEVVTVSARIEEEVADLDDEEKAEFLAEMGIEESGLDQLIQKAYTLLGLGTYFTAGEQEVRAWTFTLGMKAPQAAGIIHSDFERGFIRAETVSYDDLVSYGNMSAAKEAGRVRQEGKEYIVADGDVMLFRFNV
>NZ_CP049740.1|WP_166162023.1|1149586_1150279_+|DUF1129-domain-containing-protein
MAETNTQQTKEELQAANTALWEQLTKRNEQYMLGLDKVLTAANYDEDKRATLYNQMMTELAENQKTGVTARQLYGTVSECAERILQQPEEAPGRSSDFLIAMDGGLLLGSMFALISGISLFTADGADAQKGMGIISLLINFIIGGLAMLIISKFTPNPDAPKGKRGYGKYILATTGAMLIWMLAMTLATAFIPVSINRALPAVAYLIIAGVGFAAKIYFKKRLRITGGIF
>NZ_CP049740.1|WP_166162025.1|1150515_1152000_+|IMP-dehydrogenase
MSNWESKFAKEGFTFDDVLLVPAESHVLPNDIDVSVQLAKNILLNVPIMSASMDTVTEAEMAIAMARQGGLGVIHKNMSIKAQADEVRKVKRSESGVIIDPFFLTPDHLASEAEALMSKYRISGVPVVNDMEERALVGILTNRDLRFIEDYQVPIGEVMTEEHLVTAPVGTSLKEAERMLQKYKIEKLPLVDEEGRLAGLITIKDIERVIEFPNSAKDEHGRLVVAAAVGVTSDTFERAQALLDAGADAIVIDTAHGHSAGVLRKIKEIRAQFPEATLIAGNVATAEGTRALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQITAIYDAAGVAREYGKTIIADGGIKYSGDIVKAMAAGGHAVMLGSMLAGTDESPGEFEIFQGRRFKTYRGMGSLAAMEKGSSDRYFQGGVNEAKKLVPEGIEGRVAYKGAAGDIIFQLLGGIRSGMGYVGAGNLEELRENAQFIRMSGAGLIESHPHDVHITKEAPNYSINR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049740_3	3.1\|1142205\|26\|NZ_CP049740\|CRISPRCasFinder	1142205-1142230	26	NZ_CP017942	Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence	164818-164843	5	0.808

1. spacer 3.1|1142205|26|NZ_CP049740|CRISPRCasFinder matches to NZ_CP017942 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

gcggaaaaagtgtcgagtgggcattt	CRISPR spacer
gcggaaaaagtggcgagtggggcgtg	Protospacer
************ ********   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

208143 : 217385

Streptococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166160633.1\|208143_209382_-	DNA cytosine methyltransferase	Q6DMX0	Streptococcus_phage	1.9e-67	47.1
WP_166160634.1\|209585_211376_-	recombinase family protein	A0A2I4R675	Erysipelothrix_phage	5.6e-169	53.1
WP_166160635.1\|211453_211600_-	conjugal transfer protein	NA	NA	NA	NA
WP_166160636.1\|212086_212329_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	3.1e-14	55.1
WP_166160637.1\|212303_213026_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	1.1e-17	41.9
WP_166160638.1\|213372_214116_-	ABC transporter permease	NA	NA	NA	NA
WP_166160639.1\|214102_214834_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-22	33.5
WP_166160640.1\|214928_217385_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.2e-190	41.1

DBSCAN-SWA_2

904574 : 912831

Enterococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166161654.1\|904574_905222_-	HD domain-containing protein	S4W232	Pandoravirus	1.4e-13	29.0
WP_166161656.1\|905233_905641_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_166161658.1\|905870_906233_+	hypothetical protein	NA	NA	NA	NA
WP_166164070.1\|906294_907269_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	3.8e-119	65.6
WP_166161660.1\|907303_909502_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A0D3MSW9	Lactococcus_phage	6.7e-273	64.2
WP_076768136.1\|909488_909857_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A1W6JL40	Lactococcus_phage	2.3e-13	37.1
WP_076768135.1\|909853_910084_-	glutaredoxin family protein	NA	NA	NA	NA
WP_166164072.1\|910098_910653_-	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	1.2e-53	58.8
WP_166161662.1\|910668_912831_-	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	7.8e-258	62.5

DBSCAN-SWA_3

1235417 : 1242293

Streptococcus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001062587.1\|1235417_1236035_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.9e-16	33.5
WP_000108743.1\|1236034_1238179_+	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	1.3e-268	98.6
WP_000635249.1\|1238312_1238552_+	peptide-binding protein	A0A1X9I6D5	Streptococcus_phage	6.8e-22	81.5
WP_001814874.1\|1238600_1238684_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA
WP_001038795.1\|1238808_1239546_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	3.1e-134	99.2
WP_166162137.1\|1240109_1240826_+	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	3.1e-102	100.0
WP_002294505.1\|1240858_1241722_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	A0A1X9I6F2	Streptococcus_phage	8.7e-168	100.0
WP_002294507.1\|1241765_1242293_+	adenine phosphoribosyltransferase	A0A1X9I6E2	Streptococcus_phage	1.9e-93	100.0

DBSCAN-SWA_4

1400177 : 1413184

Streptococcus_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166162367.1\|1400177_1401377_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.1e-15	31.3
WP_166162369.1\|1401695_1402586_+	RNase adapter RapZ	NA	NA	NA	NA
WP_166162371.1\|1402582_1403593_+	YvcK family protein	A1IMD5	Streptococcus_phage	5.7e-94	52.2
WP_076767333.1\|1403625_1404567_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.9e-53	38.0
WP_166162373.1\|1404640_1405018_-	single-stranded DNA-binding protein	Q0GXW0	Lactococcus_phage	4.5e-20	42.6
WP_076767329.1\|1405196_1405910_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.1e-30	34.6
WP_166164145.1\|1405963_1407331_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.0e-29	30.2
WP_166162375.1\|1407558_1407792_-	hypothetical protein	NA	NA	NA	NA
WP_166162377.1\|1407873_1410060_-	LTA synthase family protein	W6LM83	Streptococcus_phage	4.7e-162	46.5
WP_166162379.1\|1410277_1411468_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	6.7e-86	45.1
WP_166162381.1\|1411921_1413184_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	3.4e-27	58.0

DBSCAN-SWA_5

1479401 : 1488287

Erysipelothrix_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166162478.1\|1479401_1479719_+	rRNA biogenesis protein rrp5	A0A2K5B2A7	Erysipelothrix_phage	1.4e-11	46.2
WP_166162480.1\|1479719_1480862_+	DUF2800 domain-containing protein	M1Q218	Streptococcus_phage	1.9e-122	57.5
WP_166162482.1\|1480863_1481406_+	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	2.0e-77	77.2
WP_166162484.1\|1481466_1483404_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	3.8e-264	68.6
WP_166162486.1\|1483614_1484385_+	phage antirepressor	A0A1Q1PVU2	Staphylococcus_phage	8.0e-64	50.4
WP_166162488.1\|1484377_1484722_+	DUF4406 domain-containing protein	A0A2K5B270	Erysipelothrix_phage	1.2e-27	49.5
WP_166162490.1\|1487095_1487305_+	hypothetical protein	NA	NA	NA	NA
WP_166162492.1\|1487301_1487586_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	1.2e-25	60.6
WP_166162494.1\|1487585_1488287_+	DEAD/DEAH box helicase	A0A1L6BZE2	Pasteurella_phage	3.5e-42	54.9

DBSCAN-SWA_6

1608715 : 1676274

Enterobacteria_phage(18.52%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166162664.1\|1608715_1608976_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.9e-18	55.7
WP_166162665.1\|1609244_1609895_+	sugar transferase	NA	NA	NA	NA
WP_166162666.1\|1609931_1610789_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_166162667.1\|1610812_1611583_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.1e-15	38.5
WP_166162668.1\|1611663_1612896_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_166162669.1\|1612899_1613919_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	2.0e-38	36.7
WP_166162670.1\|1613918_1615028_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA
WP_166162671.1\|1615031_1616186_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	5.3e-104	49.5
WP_166162672.1\|1616187_1617210_+	EpsG family protein	NA	NA	NA	NA
WP_166162673.1\|1617219_1618503_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_166162674.1\|1618504_1619638_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_166162675.1\|1619630_1620962_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_166162676.1\|1620984_1622190_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_166162677.1\|1622189_1623137_+	hypothetical protein	NA	NA	NA	NA
WP_166164176.1\|1623208_1623727_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_166162679.1\|1624107_1625412_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_166162681.1\|1625425_1626685_+	thiolase domain-containing protein	NA	NA	NA	NA
WP_166164179.1\|1626774_1627836_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A0E3G0Y1	Synechococcus_phage	4.8e-11	24.7
WP_166162683.1\|1627846_1628716_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.9e-99	61.1
WP_166162685.1\|1628739_1629795_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.9e-72	43.8
WP_166162687.1\|1630386_1631250_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	1.3e-22	33.0
WP_166162689.1\|1631712_1632459_+	chain-length determining protein	NA	NA	NA	NA
WP_166162691.1\|1632471_1633206_+	CpsD/CapB family tyrosine-protein kinase	NA	NA	NA	NA
WP_166162693.1\|1633210_1633984_+	tyrosine protein phosphatase	NA	NA	NA	NA
WP_166164181.1\|1634041_1635820_+	polysaccharide biosynthesis protein	A0A2P1ELS8	Moumouvirus	1.2e-27	29.6
WP_166162695.1\|1636129_1636366_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_166162085.1\|1636390_1637899_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.0e-51	41.0
WP_166162148.1\|1638096_1639662_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	1.0e-12	23.3
WP_068561764.1\|1639658_1640426_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.0e-39	35.7
WP_166162697.1\|1640547_1641297_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	6.4e-42	36.8
WP_166164184.1\|1641289_1642828_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.4e-21	28.2
WP_166162699.1\|1643725_1644010_+	hypothetical protein	NA	NA	NA	NA
WP_166162701.1\|1644009_1644924_+	hypothetical protein	NA	NA	NA	NA
WP_166162703.1\|1644925_1645660_+	nucleotidyltransferase family protein	A0A127AW70	Bacillus_phage	1.6e-05	23.9
WP_166162705.1\|1645818_1646928_+	transcriptional regulator	NA	NA	NA	NA
WP_166162707.1\|1646948_1647917_+	transcriptional regulator	NA	NA	NA	NA
WP_166162709.1\|1647940_1648954_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.9e-98	52.3
WP_166162711.1\|1649094_1650408_+	nucleotide sugar dehydrogenase	M1I6A7	Acanthocystis_turfacea_Chlorella_virus	1.2e-27	29.7
WP_166162713.1\|1650516_1651395_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	7.0e-64	44.5
WP_166162715.1\|1652612_1653836_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_166162717.1\|1653835_1654855_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	2.4e-39	34.3
WP_166162719.1\|1654854_1655964_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA
WP_166162721.1\|1655972_1657100_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	4.2e-98	48.4
WP_166162723.1\|1657099_1658248_+	glycosyltransferase	NA	NA	NA	NA
WP_166162725.1\|1658312_1659485_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_166162727.1\|1659513_1660800_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_166162729.1\|1660787_1662164_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_166162731.1\|1662194_1663235_+	hypothetical protein	NA	NA	NA	NA
WP_166162733.1\|1663394_1666070_+	hypothetical protein	A0A0N9SGH1	Paenibacillus_phage	1.0e-20	34.9
WP_166162735.1\|1666147_1669312_+	LysM peptidoglycan-binding domain-containing protein	A0A249Y0X5	Enterococcus_phage	1.1e-13	38.7
WP_166164186.1\|1669329_1670022_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_166162737.1\|1670118_1671066_+	glycosyltransferase family 2 protein	V5USA4	Oenococcus_phage	3.2e-75	46.0
WP_166162739.1\|1671184_1672177_+	acyltransferase	A0A2H4IZR3	uncultured_Caudovirales_phage	2.1e-08	24.4
WP_166162085.1\|1672239_1673748_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.0e-51	41.0
WP_166162741.1\|1673944_1675510_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	1.0e-12	23.3
WP_166162743.1\|1675506_1676274_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.0e-38	35.3

DBSCAN-SWA_7

2063283 : 2075158

Bacillus_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166163525.1\|2063283_2064174_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	1.3e-36	32.1
WP_166163527.1\|2064190_2065363_+	phosphopentomutase	NA	NA	NA	NA
WP_166163529.1\|2065381_2066194_+	purine-nucleoside phosphorylase	Q5YBA4	Grouper_iridovirus	4.5e-57	41.7
WP_166163531.1\|2066337_2066727_+	N-acetyltransferase	NA	NA	NA	NA
WP_166163533.1\|2066723_2067503_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.7e-10	26.5
WP_166163535.1\|2067495_2068083_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.9e-18	35.3
WP_166163537.1\|2068105_2068846_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_166163539.1\|2068882_2069617_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.4e-41	40.5
WP_166163541.1\|2069613_2071428_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	1.1e-26	31.4
WP_166163543.1\|2071744_2072320_+	ECF transporter S component	NA	NA	NA	NA
WP_166163545.1\|2072390_2072615_-	ferredoxin	A0A127AYY7	Bacillus_phage	1.1e-10	39.4
WP_166163547.1\|2072651_2073719_+	hypothetical protein	NA	NA	NA	NA
WP_166163549.1\|2073706_2075158_+	ATP-dependent DNA helicase RecQ	K7YHB4	Megavirus	2.7e-52	32.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049740

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection