CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049605	Klebsiella pneumoniae strain Kp8701 plasmid unnamed, complete sequence	0 crisprs	csa3	0	0	2	0
NZ_CP049604	Klebsiella pneumoniae strain Kp8701 chromosome, complete genome	2 crisprs	RT,DEDDh,cas3,WYL,DinG,csa3	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

68618 : 132263

Bacillus_phage(30.77%)

integrase,transposase,protease

attL 58378:58392|attR 90645:90659

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
58378:58392	attL	NA	NA	NA	NA
WP_001515717.1\|68618_69359_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_077269298.1\|71476_73360_-	EAL domain-containing protein	NA	NA	NA	NA
WP_139788384.1\|73889_74012_+	small membrane protein	NA	NA	NA	NA
WP_064185732.1\|74302_74938_+	hypothetical protein	NA	NA	NA	NA
WP_131863819.1\|75237_75711_+	hypothetical protein	NA	NA	NA	NA
WP_023328269.1\|76237_76495_-	hypothetical protein	NA	NA	NA	NA
WP_071836382.1\|77099_78554_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004176137.1\|79301_80333_+\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA
WP_023328272.1\|80824_81175_-	hypothetical protein	NA	NA	NA	NA
WP_001261282.1\|81734_81965_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044770.1\|81961_82378_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004206609.1\|82451_84014_+	AAA family ATPase	NA	NA	NA	NA
WP_165430150.1\|83998_85021_+	DNA helicase UvrD	NA	NA	NA	NA
WP_014343466.1\|85092_85215_+	hypothetical protein	NA	NA	NA	NA
WP_032411229.1\|85564_86473_+	HNH endonuclease	NA	NA	NA	NA
WP_004187110.1\|86658_87009_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	6.0e-19	51.4
WP_004187113.1\|87156_87588_-	silver-binding protein SilE	NA	NA	NA	NA
WP_032437967.1\|87837_89313_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_032437987.1\|89305_89986_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	3.5e-31	35.6
WP_023280925.1\|90175_91561_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
90645:90659	attR	NA	NA	NA	NA
WP_004213578.1\|91589_91952_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_048270279.1\|92065_93358_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_049183829.1\|93368_96515_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	8.0e-62	22.4
WP_000758228.1\|96601_97042_+	hypothetical protein	NA	NA	NA	NA
WP_049183833.1\|97168_99616_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	4.4e-84	35.8
WP_000843497.1\|99656_99854_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_000287501.1\|99887_100625_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.3e-10	31.9
WP_001023257.1\|100913_101363_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|101591_103409_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|103408_104305_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|104344_104725_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|104729_105659_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|105713_106394_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_009309895.1\|106390_107791_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	2.4e-18	26.6
WP_004118347.1\|108006_108441_+	hypothetical protein	NA	NA	NA	NA
WP_049183851.1\|108737_109718_-\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	1.3e-183	97.9
WP_015065578.1\|110130_110520_+	tautomerase family protein	NA	NA	NA	NA
WP_000654805.1\|110801_111770_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	7.7e-181	96.9
WP_032413314.1\|111977_112985_+	DUF1611 domain-containing protein	NA	NA	NA	NA
WP_023328925.1\|112986_113952_+	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA
WP_049183621.1\|113967_115833_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-14	30.7
WP_015065582.1\|115855_117397_+	glutathione ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015065583.1\|117478_118411_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_023328923.1\|118407_119292_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_023328922.1\|119294_120338_+	P1 family peptidase	NA	NA	NA	NA
WP_015065586.1\|120334_121156_+	M55 family metallopeptidase	NA	NA	NA	NA
WP_032413424.1\|121727_122636_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_162889636.1\|123771_124740_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.0e-181	97.2
WP_049183345.1\|125229_125739_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_049183348.1\|125761_127429_+	hypothetical protein	NA	NA	NA	NA
WP_013609503.1\|127442_128642_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|129063_129330_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|129317_129800_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004152113.1\|131300_132263_-\|protease	M48 family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

137758 : 202940

Planktothrix_phage(23.53%)

integrase,transposase

attL 150470:150489|attR 162312:162331

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118209.1\|137758_138022_+\|transposase	transposase	NA	NA	NA	NA
WP_004181997.1\|139172_140180_-	formamidase	NA	NA	NA	NA
WP_004181996.1\|140215_140905_-	urea ABC transporter ATP-binding subunit UrtE	G9BWD6	Planktothrix_phage	8.5e-17	29.6
WP_004181995.1\|140915_141665_-	urea ABC transporter ATP-binding protein UrtD	A0A2H4PQG7	Staphylococcus_phage	2.4e-17	26.4
WP_004181994.1\|141661_142777_-	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_004181993.1\|142786_143713_-	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_004197507.1\|143769_144960_-	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004181991.1\|145264_148645_+	response regulator	A0A1V0SGX0	Hokovirus	1.7e-41	30.3
WP_004181990.1\|148607_149528_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.0e-13	34.1
150470:150489	attL	NA	NA	NA	NA
WP_072143344.1\|150524_151493_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.0e-173	91.6
WP_049182134.1\|153403_155137_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
WP_004118225.1\|155144_156092_-	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	9.6e-11	22.7
WP_004152278.1\|156136_157741_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004118227.1\|157753_158674_-	ABC transporter permease	NA	NA	NA	NA
WP_004118228.1\|158673_159522_-	ABC transporter permease	NA	NA	NA	NA
WP_004118229.1\|159518_160112_-	ANTAR domain-containing protein	NA	NA	NA	NA
WP_004118840.1\|160108_161236_-	transporter substrate-binding protein	NA	NA	NA	NA
WP_004118231.1\|161520_161688_-\|integrase	integrase	NA	NA	NA	NA
WP_004197062.1\|162790_163312_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
162312:162331	attR	NA	NA	NA	NA
WP_004118237.1\|163308_164262_+	fec operon regulator FecR	NA	NA	NA	NA
WP_020325014.1\|164348_166673_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004182127.1\|166717_167620_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_049182130.1\|167616_168615_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_049182128.1\|168611_169568_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004152282.1\|169568_170336_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004118251.1\|170434_170728_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_074420616.1\|171058_171310_-	EAL domain-containing protein	NA	NA	NA	NA
WP_016528990.1\|171548_172631_+	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	2.0e-185	96.1
WP_065520837.1\|172752_175827_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.6
WP_004098904.1\|175878_177132_+	lactose permease	NA	NA	NA	NA
WP_074420608.1\|177188_177359_+	galactoside O-acetyltransferase	NA	NA	NA	NA
WP_024623136.1\|178576_179155_+	hypothetical protein	NA	NA	NA	NA
WP_049181506.1\|179157_179517_-	hypothetical protein	NA	NA	NA	NA
WP_087796248.1\|179667_180817_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	9.1e-173	95.6
WP_032432508.1\|181871_182471_-	cupin domain-containing protein	NA	NA	NA	NA
WP_032432506.1\|182516_183218_-	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_032432505.1\|183214_184468_-	M20 family metallo-hydrolase	NA	NA	NA	NA
WP_032432532.1\|184464_185250_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.5e-29	38.3
WP_032432503.1\|185281_185923_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_032432501.1\|185919_186579_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_032432500.1\|186589_187435_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_087788032.1\|189793_191001_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	9.8e-101	63.2
WP_003031962.1\|191566_192637_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_003031960.1\|193049_194147_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_049182672.1\|194377_195415_+	SIS domain-containing protein	NA	NA	NA	NA
WP_032432493.1\|195420_196251_+	carbohydrate kinase	NA	NA	NA	NA
WP_003031956.1\|196316_197072_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_165430151.1\|197115_197778_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003031954.1\|197777_198518_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-29	41.0
WP_016947508.1\|198517_199348_+	TIM barrel protein	NA	NA	NA	NA
WP_020803678.1\|199368_200235_+	DMT family transporter	NA	NA	NA	NA
WP_101977911.1\|200802_201327_+\|transposase	transposase	S5WIU1	Leptospira_phage	6.7e-22	31.0
WP_049183940.1\|201701_202940_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	6.2e-10	22.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP049604

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049604_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049604_1

1720191-1720276

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049604_1

>merge|NZ_CP049604|1|1720191-1720276|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NZ_CP049604|1|1|1720191-1720276|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049604.1\|WP_002888329.1\|1712942_1714229_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP049604.1\|WP_004178574.1\|1723203_1726110_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP049604.1\|WP_002888324.1\|1711129_1711951_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP049604.1\|WP_004177431.1\|1709896_1710745_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP049604.1\|WP_002888337.1\|1717735_1718434_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP049604.1\|WP_004177424.1\|1729663_1731166_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP049604.1\|WP_004145972.1\|1733223_1734069_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP049604.1\|WP_048291933.1\|1722531_1723191_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP049604.1\|WP_031592062.1\|1720373_1721738_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP049604.1\|WP_002888347.1\|1721917_1722457_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP049604.1\|WP_004222649.1\|1726297_1728655_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP049604.1\|WP_002888332.1\|1716875_1717703_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP049604.1\|WP_002888320.1\|1709164_1709644_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP049604.1\|WP_004192048.1\|1718423_1720049_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP049604.1\|WP_002888353.1\|1728830_1729526_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP049604.1\|WP_002888327.1\|1711947_1712937_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP049604.1\|WP_002888323.1\|1710749_1711127_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP049604.1\|WP_012737392.1\|1731176_1732886_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP049604.1\|WP_012737387.1\|1714283_1716632_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP049604.1\|WP_004219851.1\|1733067_1733238_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049604.1\|WP_002888329.1\|1712942_1714229_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP049604.1\|WP_004178574.1\|1723203_1726110_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP049604.1\|WP_002888324.1\|1711129_1711951_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP049604.1\|WP_004177431.1\|1709896_1710745_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP049604.1\|WP_002888337.1\|1717735_1718434_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP049604.1\|WP_004177424.1\|1729663_1731166_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP049604.1\|WP_004145972.1\|1733223_1734069_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP049604.1\|WP_048291933.1\|1722531_1723191_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.83616e-160
NZ_CP049604.1\|WP_031592062.1\|1720373_1721738_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	1.3077e-169
NZ_CP049604.1\|WP_002888347.1\|1721917_1722457_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP049604.1\|WP_004222649.1\|1726297_1728655_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP049604.1\|WP_002888332.1\|1716875_1717703_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP049604.1\|WP_002888320.1\|1709164_1709644_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP049604.1\|WP_004192048.1\|1718423_1720049_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	7.63459e-173
NZ_CP049604.1\|WP_002888353.1\|1728830_1729526_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP049604.1\|WP_002888327.1\|1711947_1712937_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP049604.1\|WP_002888323.1\|1710749_1711127_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP049604.1\|WP_012737392.1\|1731176_1732886_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP049604.1\|WP_012737387.1\|1714283_1716632_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0

>NZ_CP049604.1|WP_004192048.1|1718423_1720049_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP049604.1|WP_002888337.1|1717735_1718434_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP049604.1|WP_002888332.1|1716875_1717703_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP049604.1|WP_012737387.1|1714283_1716632_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNDWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP049604.1|WP_002888329.1|1712942_1714229_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP049604.1|WP_002888327.1|1711947_1712937_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP049604.1|WP_002888324.1|1711129_1711951_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP049604.1|WP_002888323.1|1710749_1711127_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP049604.1|WP_004177431.1|1709896_1710745_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP049604.1|WP_002888320.1|1709164_1709644_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP049604.1|WP_031592062.1|1720373_1721738_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLTNVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP049604.1|WP_002888347.1|1721917_1722457_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP049604.1|WP_048291933.1|1722531_1723191_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVLLYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP049604.1|WP_004178574.1|1723203_1726110_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP049604.1|WP_004222649.1|1726297_1728655_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP049604.1|WP_002888353.1|1728830_1729526_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP049604.1|WP_004177424.1|1729663_1731166_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP049604.1|WP_012737392.1|1731176_1732886_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP049604.1|WP_004219851.1|1733067_1733238_-|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP049604.1|WP_004145972.1|1733223_1734069_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE

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Crispr_ID: NZ_CP049604_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049604_2

2599106-2599183

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCACCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049604_2

>merge|NZ_CP049604|2|2599106-2599183|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NZ_CP049604|2|2|2599106-2599183|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049604.1\|WP_004223758.1\|2599884_2601174_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP049604.1\|WP_014342949.1\|2594622_2595561_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP049604.1\|WP_072145324.1\|2590670_2591990_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP049604.1\|WP_002895648.1\|2604313_2605036_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP049604.1\|WP_004212869.1\|2585788_2586220_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185353
NZ_CP049604.1\|WP_004147680.1\|2608680_2609778_-\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP049604.1\|WP_004183472.1\|2595557_2597084_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP049604.1\|WP_004183463.1\|2584169_2585255_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP049604.1\|WP_002895652.1\|2605786_2605999_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049604.1\|WP_004147672.1\|2597182_2598565_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP049604.1\|WP_002895358.1\|2593004_2593730_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP049604.1\|WP_023302145.1\|2603565_2604321_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP049604.1\|WP_002895655.1\|2606410_2608432_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP049604.1\|WP_004183475.1\|2602424_2603582_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP049604.1\|WP_023302146.1\|2591986_2592943_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP049604.1\|WP_023302148.1\|2586271_2588959_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP049604.1\|WP_004152853.1\|2604977_2605700_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP049604.1\|WP_002895580.1\|2601387_2602428_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP049604.1\|WP_004142122.1\|2589232_2590516_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP049604.1\|WP_002895575.1\|2599337_2599814_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339

Protein	Function_ID	Function_description	E-value
NZ_CP049604.1\|WP_004223758.1\|2599884_2601174_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP049604.1\|WP_014342949.1\|2594622_2595561_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP049604.1\|WP_072145324.1\|2590670_2591990_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP049604.1\|WP_002895648.1\|2604313_2605036_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP049604.1\|WP_004212869.1\|2585788_2586220_+\|universal-stress-protein	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	7.32546e-44
NZ_CP049604.1\|WP_004147680.1\|2608680_2609778_-\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP049604.1\|WP_004183472.1\|2595557_2597084_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP049604.1\|WP_004183463.1\|2584169_2585255_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.94626e-66
NZ_CP049604.1\|WP_004147672.1\|2597182_2598565_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP049604.1\|WP_002895358.1\|2593004_2593730_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP049604.1\|WP_023302145.1\|2603565_2604321_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.36239e-160
NZ_CP049604.1\|WP_002895655.1\|2606410_2608432_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP049604.1\|WP_004183475.1\|2602424_2603582_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP049604.1\|WP_023302146.1\|2591986_2592943_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	6.77924e-178
NZ_CP049604.1\|WP_023302148.1\|2586271_2588959_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP049604.1\|WP_004152853.1\|2604977_2605700_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP049604.1\|WP_002895580.1\|2601387_2602428_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP049604.1\|WP_004142122.1\|2589232_2590516_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP049604.1\|WP_002895575.1\|2599337_2599814_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117

>NZ_CP049604.1|WP_004147672.1|2597182_2598565_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP049604.1|WP_004183472.1|2595557_2597084_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLIGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP049604.1|WP_014342949.1|2594622_2595561_+|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP049604.1|WP_002895358.1|2593004_2593730_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP049604.1|WP_023302146.1|2591986_2592943_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEVAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLARLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARAAARVAWQIAHWWR
>NZ_CP049604.1|WP_072145324.1|2590670_2591990_+|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDANGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASMHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP049604.1|WP_004142122.1|2589232_2590516_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP049604.1|WP_023302148.1|2586271_2588959_+|cation-transporting-P-type-ATPase
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGDTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVETLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEPVGKIYAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLLLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>NZ_CP049604.1|WP_004212869.1|2585788_2586220_+|universal-stress-protein
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALTDELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR
>NZ_CP049604.1|WP_004183463.1|2584169_2585255_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MNRYFSLIPVVIIFTTACDQKAPTVESAPRMVKVAQVTAVGNTQQRTFPARIESGDSTELSFKRGGQVESLDIRQGASVAQGQTLARLNAREAQQRVNERQTAATLAQRQFDRFQTLAGRQAISQAEMDVQRANRDAANAALKIAREELAQMSLIAPFSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDIRNTAYRPVVRINTLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPRPDDFPAVGGVSGTVTVNLGNLPASAGRETLIVPAEAVFNPDNRPKNEPVVWVVKGDNAHRYLEERKVAVGEVTSQGVAITDGLRAGEQVVAAGVSELHAGQPVRVWTRERGL
>NZ_CP049604.1|WP_002895575.1|2599337_2599814_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP049604.1|WP_004223758.1|2599884_2601174_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMATLQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP049604.1|WP_002895580.1|2601387_2602428_+|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP049604.1|WP_004183475.1|2602424_2603582_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHTEDINRLLEVLHGHSE
>NZ_CP049604.1|WP_023302145.1|2603565_2604321_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAISELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP049604.1|WP_002895648.1|2604313_2605036_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP049604.1|WP_004152853.1|2604977_2605700_-|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP049604.1|WP_002895652.1|2605786_2605999_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP049604.1|WP_002895655.1|2606410_2608432_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP049604.1|WP_004147680.1|2608680_2609778_-|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIRVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

157488 : 175463

uncultured_Caudovirales_phage(66.67%)

portal,tRNA,tail,capsid,terminase,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004900709.1\|157488_158502_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	59.2
WP_001144069.1\|158739_158955_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_004149864.1\|159066_160812_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-75	38.7
WP_004174339.1\|161030_162872_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_002917636.1\|162971_163478_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_048292169.1\|164007_164940_+	hypothetical protein	NA	NA	NA	NA
WP_040177087.1\|164936_165488_+	hypothetical protein	NA	NA	NA	NA
WP_048292170.1\|165707_167369_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	96.2
WP_048292171.1\|167352_167709_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	3.6e-59	97.4
WP_048271590.1\|167984_168428_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.4e-49	62.6
WP_016160668.1\|168427_168721_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.2e-42	82.5
WP_048292172.1\|168713_169052_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.1e-20	45.9
WP_048292173.1\|169048_170284_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.9e-232	95.4
WP_004174254.1\|170285_170846_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.3e-100	98.4
WP_048292174.1\|170897_172058_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	4.5e-204	94.6
WP_048292175.1\|172312_173086_+	hypothetical protein	NA	NA	NA	NA
WP_048292176.1\|173138_173384_-	hypothetical protein	NA	NA	NA	NA
WP_048292177.1\|173663_175463_-	DNA primase	Q7M2A8	Enterobacteria_phage	1.4e-130	49.0

DBSCAN-SWA_2

2187877 : 2235525

Salmonella_phage(19.3%)

terminase,integrase,tRNA,head

attL 2190761:2190807|attR 2240012:2240058

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023302225.1\|2187877_2189263_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	2.7e-46	35.4
WP_004143016.1\|2189308_2189521_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143017.1\|2189522_2190389_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
2190761:2190807	attL	NA	NA	NA	NA
WP_165430066.1\|2190820_2191984_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	1.0e-203	87.3
WP_074188849.1\|2191860_2192196_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012542647.1\|2192208_2192448_-	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	2.4e-11	47.4
WP_165430067.1\|2192447_2192669_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.8e-14	58.0
WP_165430068.1\|2192665_2192857_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	1.3e-12	61.0
WP_087847398.1\|2192853_2193339_-	hypothetical protein	A0A076G835	Escherichia_phage	1.2e-30	61.9
WP_009483862.1\|2193335_2193560_-	hypothetical protein	G8C7U9	Escherichia_phage	9.2e-21	73.2
WP_023283320.1\|2193556_2193778_-	hypothetical protein	NA	NA	NA	NA
WP_141444227.1\|2193774_2194896_-	site-specific DNA-methyltransferase	A0A1P8DTZ3	Salmonella_phage	3.7e-102	52.3
WP_023283323.1\|2194892_2195051_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_165430069.1\|2195047_2195728_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.6e-121	91.6
WP_165430070.1\|2195724_2196570_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	9.0e-69	59.2
WP_048986756.1\|2196585_2196870_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_165430071.1\|2196877_2197849_-	hypothetical protein	A0A077KCC0	Edwardsiella_phage	2.9e-39	76.8
WP_100097684.1\|2197852_2198371_-	hypothetical protein	A0A1W6DY33	Salmonella_phage	2.9e-33	44.7
WP_008807814.1\|2198429_2198636_-	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_165430072.1\|2198628_2198754_-	hypothetical protein	NA	NA	NA	NA
WP_012542634.1\|2199058_2199235_+	hypothetical protein	NA	NA	NA	NA
WP_012542633.1\|2199339_2199744_-	hypothetical protein	NA	NA	NA	NA
WP_041165401.1\|2199927_2200638_-	helix-turn-helix domain-containing protein	K7P7K3	Enterobacteria_phage	1.1e-91	71.0
WP_165430073.1\|2200742_2200934_+	hypothetical protein	A0A2R2Z333	Escherichia_phage	1.1e-09	58.9
WP_116954341.1\|2201014_2201299_+	hypothetical protein	K7PHN8	Enterobacterial_phage	1.1e-21	57.4
WP_165430074.1\|2201333_2202353_+	phage replication protein	S4TNJ9	Salmonella_phage	5.8e-62	71.8
WP_040206708.1\|2202352_2202943_+	hypothetical protein	I3PUZ9	Vibrio_phage	7.0e-36	40.5
WP_165430075.1\|2202942_2203242_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_165430076.1\|2203809_2204502_+	ead/Ea22-like family protein	A0A1V0E5L5	Salmonella_phage	6.3e-28	47.6
WP_023283338.1\|2204501_2204714_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	2.4e-10	43.9
WP_009308005.1\|2205656_2205971_+	hypothetical protein	A0A220NQY7	Salmonella_phage	4.4e-05	35.6
WP_165430077.1\|2206127_2206724_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.3e-57	54.8
WP_165430078.1\|2206729_2206897_+	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_165430079.1\|2206893_2207562_+	serine/threonine protein phosphatase	M9P0E4	Enterobacteria_phage	6.8e-104	78.4
WP_009483889.1\|2207554_2208193_+	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	68.9
WP_009483890.1\|2208189_2208330_+	YlcG family protein	NA	NA	NA	NA
WP_165430080.1\|2208326_2209016_+	antiterminator	I6PDF8	Cronobacter_phage	2.7e-63	55.4
WP_004151282.1\|2210038_2210287_+	hypothetical protein	NA	NA	NA	NA
WP_017898848.1\|2210289_2210820_+	lysozyme	K7PLY1	Enterobacteria_phage	9.3e-80	78.9
WP_165430081.1\|2210816_2211206_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.6e-23	48.4
WP_165430082.1\|2211420_2211543_+	hypothetical protein	NA	NA	NA	NA
WP_072040663.1\|2211664_2212297_+	hypothetical protein	A0A2I7RHH8	Vibrio_phage	5.4e-42	48.5
WP_023304875.1\|2212298_2213975_+\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	3.9e-249	74.3
WP_165430083.1\|2213975_2215496_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	1.5e-106	45.2
WP_165430084.1\|2215548_2216256_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	1.3e-52	46.9
WP_064172633.1\|2216290_2217460_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	3.4e-58	37.5
WP_040218280.1\|2217461_2217944_+	hypothetical protein	A0A219YBF2	Aeromonas_phage	1.7e-32	49.7
WP_009308036.1\|2217943_2218981_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	6.5e-85	50.3
WP_040218278.1\|2218982_2219309_+	hypothetical protein	H9C0V9	Aeromonas_phage	4.8e-10	41.6
WP_040218276.1\|2219308_2219752_+	DUF4054 domain-containing protein	E2GLV0	Acinetobacter_phage	1.3e-13	41.7
WP_064190368.1\|2219754_2220318_+	hypothetical protein	H9C0W2	Aeromonas_phage	3.0e-20	33.3
WP_048279608.1\|2220314_2220683_+	hypothetical protein	Q6UJ26	Burkholderia_virus	9.5e-07	29.8
WP_064190367.1\|2220664_2221216_+	hypothetical protein	NA	NA	NA	NA
WP_099451436.1\|2221219_2222701_+	DUF3383 domain-containing protein	Q2NPD0	Xanthomonas_phage	3.0e-59	34.6
WP_023304864.1\|2222700_2223144_+	hypothetical protein	NA	NA	NA	NA
WP_110230517.1\|2223325_2224081_+	DNA-binding protein	K7PGT4	Enterobacteria_phage	1.2e-61	52.2
WP_094326520.1\|2224224_2224701_+	hypothetical protein	A0A068CGG2	Acinetobacter_phage	2.1e-06	29.1
WP_073568712.1\|2224778_2224922_+	hypothetical protein	NA	NA	NA	NA
WP_165430085.1\|2224902_2226819_+	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.6e-41	38.8
WP_004196852.1\|2226822_2227665_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	2.2e-27	32.1
WP_004177055.1\|2227666_2227972_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	6.2e-20	46.5
WP_071646971.1\|2227968_2228823_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	1.4e-29	30.1
WP_165430086.1\|2228824_2229415_+	hypothetical protein	A1Z003	Burkholderia_virus	6.4e-05	27.5
WP_101881436.1\|2230057_2230420_-	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	8.4e-16	48.2
WP_004151257.1\|2230519_2230690_+	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
WP_020804687.1\|2230679_2231381_+	hypothetical protein	H6WRU8	Salmonella_phage	2.3e-49	46.2
WP_087836132.1\|2231464_2232220_+	hypothetical protein	A0A0P0ZD96	Stx2-converting_phage	5.6e-70	59.3
WP_001518114.1\|2232303_2232660_+	hypothetical protein	NA	NA	NA	NA
WP_165430087.1\|2232667_2233900_+	hypothetical protein	A0A077KGW9	Edwardsiella_phage	1.3e-105	51.0
WP_165430088.1\|2233892_2234480_+	DUF2612 domain-containing protein	A0A077K9U8	Edwardsiella_phage	3.8e-34	43.4
WP_102024863.1\|2234481_2235525_+	hypothetical protein	A0A077KC23	Edwardsiella_phage	4.4e-17	41.5
2240012:2240058	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2726465 : 2735940

Dickeya_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002896440.1\|2726465_2727581_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_032429904.1\|2727577_2729518_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.9e-38	41.4
WP_002896516.1\|2729594_2729816_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|2730141_2730459_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|2730489_2732769_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|2732900_2733119_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_072145323.1\|2733472_2734192_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004224003.1\|2734218_2735940_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_4

2973009 : 3041542

Enterobacteria_phage(51.43%)

portal,tRNA,plate,tail,capsid,terminase,integrase,head

attL 3000205:3000222|attR 3036298:3036315

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165430095.1\|2973009_2974116_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004150802.1\|2974172_2974631_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004150801.1\|2974647_2975298_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004150800.1\|2975538_2976789_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004213085.1\|2977061_2977775_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004150798.1\|2977771_2978164_-	amino acid-binding protein	NA	NA	NA	NA
WP_004150797.1\|2978156_2978480_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_048263900.1\|2978568_2978775_-	hypothetical protein	NA	NA	NA	NA
WP_019704434.1\|2978722_2978908_+	hypothetical protein	NA	NA	NA	NA
WP_004140530.1\|2978928_2979156_-	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004140529.1\|2979268_2980462_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_137013050.1\|2980677_2980866_-	hypothetical protein	NA	NA	NA	NA
WP_004150795.1\|2981085_2981271_+	general stress protein	NA	NA	NA	NA
WP_004148027.1\|2981361_2981856_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004140514.1\|2981882_2982389_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004179357.1\|2982405_2983293_+	manganese catalase family protein	NA	NA	NA	NA
WP_004140511.1\|2983348_2984755_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004183659.1\|2984751_2985762_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140506.1\|2985877_2986075_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|2986641_2987274_+	DNA-binding protein	NA	NA	NA	NA
WP_032409986.1\|2987313_2987493_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|2987890_2988577_+	EAL domain-containing protein	NA	NA	NA	NA
WP_020804938.1\|2988689_2988854_-	hypothetical protein	NA	NA	NA	NA
WP_023302066.1\|2988887_2990396_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_021313530.1\|2990516_2991407_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004213090.1\|2991413_2993198_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_135718536.1\|2993271_2994480_-	HD domain-containing protein	NA	NA	NA	NA
WP_004150784.1\|2994782_2995826_+	type II asparaginase	NA	NA	NA	NA
WP_004148037.1\|2995906_2996026_+	hypothetical protein	NA	NA	NA	NA
WP_023302064.1\|2996487_2997402_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150783.1\|2997491_2998130_+	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004140489.1\|2998260_2998524_+	DUF2534 family protein	NA	NA	NA	NA
WP_004140488.1\|2998583_2998709_-	hypothetical protein	NA	NA	NA	NA
WP_004892898.1\|2998826_2998901_-	protein YoaJ	NA	NA	NA	NA
WP_004150782.1\|2998900_2999002_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_004176549.1\|2999059_3000073_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
3000205:3000222	attL	NA	NA	NA	NA
WP_065907439.1\|3000338_3001322_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	3.8e-151	80.7
WP_048024533.1\|3001437_3001737_-	helix-turn-helix transcriptional regulator	Q1JS83	Enterobacteria_phage	3.0e-43	85.9
WP_023339925.1\|3001858_3002137_+	hypothetical protein	Q1JS60	Enterobacteria_phage	2.4e-42	87.8
WP_165430096.1\|3002157_3002376_+	DUF4761 domain-containing protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
WP_040181449.1\|3002391_3002769_+	hypothetical protein	NA	NA	NA	NA
WP_165430097.1\|3002784_3003057_+	hypothetical protein	NA	NA	NA	NA
WP_165430098.1\|3003125_3003350_+	hypothetical protein	NA	NA	NA	NA
WP_040229546.1\|3003346_3003913_+	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	1.2e-13	33.2
WP_165430099.1\|3004145_3005102_+	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	2.5e-83	54.1
WP_165430100.1\|3005119_3007675_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	2.6e-188	52.5
WP_165430101.1\|3007671_3008073_+	hypothetical protein	NA	NA	NA	NA
WP_165430102.1\|3008130_3008982_-	hypothetical protein	NA	NA	NA	NA
WP_099751686.1\|3009678_3010740_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.4e-143	69.3
WP_165430103.1\|3010733_3012461_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	3.9e-228	66.9
WP_108418903.1\|3012617_3013457_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	3.3e-95	66.3
WP_004213107.1\|3013466_3014501_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	6.2e-96	50.0
WP_165430104.1\|3014550_3015408_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	3.7e-70	61.3
WP_004213109.1\|3015520_3016036_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	4.1e-40	49.4
WP_004131559.1\|3016035_3016236_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_165430105.1\|3016226_3016511_+\|tail	phage tail protein	NA	NA	NA	NA
WP_165430106.1\|3016507_3017053_+	lysozyme	Q1I0Z1	Pasteurella_virus	9.7e-32	44.7
WP_165430048.1\|3017239_3017575_+	peptidase	NA	NA	NA	NA
WP_040228476.1\|3017575_3018043_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	9.1e-47	59.2
WP_020316957.1\|3018039_3018675_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.6e-57	51.9
WP_165430107.1\|3018671_3019259_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.9e-60	60.5
WP_040229558.1\|3019255_3019606_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	1.6e-27	54.8
WP_040171963.1\|3019607_3020531_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	1.5e-53	44.3
WP_165430108.1\|3020520_3023547_+\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_165430109.1\|3023543_3023756_+	hypothetical protein	NA	NA	NA	NA
WP_165430110.1\|3023755_3024853_+\|tail	phage tail protein	A0A1J0GW57	Streptomyces_phage	3.4e-07	44.1
WP_165430111.1\|3024931_3025771_-	hypothetical protein	NA	NA	NA	NA
WP_165430112.1\|3025772_3028016_-	AAA family ATPase	Q7Y4B3	Escherichia_virus	7.8e-11	25.6
WP_165430113.1\|3028125_3028617_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.5e-52	60.6
WP_165430114.1\|3028631_3031607_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	9.8e-219	46.7
WP_077270439.1\|3031593_3031746_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	1.2e-11	65.3
WP_004131585.1\|3031751_3032069_-	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_165430115.1\|3032114_3032630_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.4e-56	60.6
WP_165430116.1\|3032629_3033802_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	2.5e-157	70.2
WP_165430117.1\|3033956_3035096_+	phage late control D family protein	B9A7A9	Serratia_phage	6.1e-145	70.5
WP_004213128.1\|3035139_3035391_+	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_023289244.1\|3035556_3036147_+	hypothetical protein	NA	NA	NA	NA
WP_004176548.1\|3036466_3036706_+	DUF333 domain-containing protein	NA	NA	NA	NA
3036298:3036315	attR	NA	NA	NA	NA
WP_014343000.1\|3036695_3037034_-	DUF488 family protein	NA	NA	NA	NA
WP_020802835.1\|3037038_3037548_-	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004140471.1\|3037693_3038386_+	CTP synthase	NA	NA	NA	NA
WP_020324105.1\|3038417_3039593_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140469.1\|3039700_3040495_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002901080.1\|3040478_3040925_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004892876.1\|3041041_3041542_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_5

3160917 : 3218754

Klebsiella_phage(21.31%)

terminase,holin,integrase,tail

attL 3156082:3156097|attR 3179974:3179989

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3156082:3156097	attL	NA	NA	NA	NA
WP_004140269.1\|3160917_3161727_-	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
WP_004140266.1\|3161728_3162721_-	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004151901.1\|3162720_3163611_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_012542039.1\|3163757_3164975_+\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	3.3e-120	51.6
WP_004190725.1\|3164871_3165186_-	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_016831904.1\|3165442_3165751_-	hypothetical protein	I6PD68	Cronobacter_phage	1.6e-23	56.9
WP_016831905.1\|3165747_3166404_-	hypothetical protein	M1F3E2	Salmonella_phage	3.5e-68	63.1
WP_017898877.1\|3166400_3166622_-	hypothetical protein	NA	NA	NA	NA
WP_048291998.1\|3166618_3167689_-	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	3.4e-145	67.9
WP_048291999.1\|3167685_3168342_-	DNA methyltransferase	G8C7S6	Escherichia_phage	1.3e-112	87.0
WP_023283323.1\|3168338_3168497_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_048292000.1\|3168493_3169174_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.3e-123	93.4
WP_048292001.1\|3169170_3170016_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.5e-68	58.8
WP_048292002.1\|3170031_3170316_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.2e-28	60.6
WP_019704100.1\|3170404_3170599_-	hypothetical protein	NA	NA	NA	NA
WP_074403789.1\|3170591_3170717_-	hypothetical protein	NA	NA	NA	NA
WP_004178796.1\|3171100_3172033_-	hypothetical protein	K7PGT0	Enterobacteria_phage	1.9e-91	55.5
WP_004178798.1\|3172029_3172503_-	hypothetical protein	K7PLT9	Enterobacteria_phage	1.1e-52	58.5
WP_086075425.1\|3172752_3173475_-	helix-turn-helix transcriptional regulator	E7C9R0	Salmonella_phage	2.1e-74	63.2
WP_004194000.1\|3173543_3173771_+	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	1.9e-18	61.2
WP_001548453.1\|3173811_3174033_+	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_048292003.1\|3174118_3174973_+	replication protein	K7PGT1	Enterobacteria_phage	5.7e-63	55.7
WP_032427729.1\|3174957_3175827_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	3.4e-95	69.7
WP_048292004.1\|3175823_3176117_+	protein ren	O48423	Enterobacteria_phage	5.6e-26	64.5
WP_048292005.1\|3176113_3176578_+	hypothetical protein	A0A0A6Z565	Enterobacter_phage	4.2e-28	80.0
WP_053065607.1\|3176570_3177182_+	ead/Ea22-like family protein	A0A075B8K3	Enterobacteria_phage	9.9e-25	36.6
WP_029602865.1\|3177185_3177479_+	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
WP_004223227.1\|3178395_3178599_+	hypothetical protein	NA	NA	NA	NA
WP_016831925.1\|3178757_3179354_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.1e-56	54.3
WP_048292008.1\|3179562_3179982_+	hypothetical protein	NA	NA	NA	NA
WP_048292009.1\|3179966_3180560_+	protein ninG	E7C9S3	Salmonella_phage	2.1e-40	49.8
3179974:3179989	attR	NA	NA	NA	NA
WP_032723549.1\|3180556_3180787_+	hypothetical protein	NA	NA	NA	NA
WP_048292010.1\|3180783_3180924_+	YlcG family protein	NA	NA	NA	NA
WP_048292011.1\|3180920_3181610_+	antiterminator	I6PDF8	Cronobacter_phage	3.8e-57	52.8
WP_071888089.1\|3182462_3183230_+	hypothetical protein	A0A1B2I9V6	Erwinia_phage	8.9e-108	75.9
WP_032692691.1\|3183232_3183382_+	hypothetical protein	NA	NA	NA	NA
WP_048334541.1\|3183419_3183539_-	small membrane protein	NA	NA	NA	NA
WP_123229826.1\|3184249_3184549_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	9.9e-47	99.0
WP_025713969.1\|3184545_3185085_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_004190674.1\|3185081_3185426_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
WP_004190672.1\|3185422_3185698_+	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_004190669.1\|3186656_3186902_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	6.7e-33	93.8
WP_023325165.1\|3187764_3188760_+\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.1e-38	45.5
WP_016946682.1\|3188743_3190057_+\|terminase	terminase	A0A0S2SYF1	Pseudomonas_phage	2.2e-183	73.6
WP_047694609.1\|3190058_3191459_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	4.1e-127	53.5
WP_048292012.1\|3191442_3192555_+	phage Mu F like family protein	I6PD76	Cronobacter_phage	1.6e-110	55.2
WP_016946679.1\|3192639_3193425_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.0e-66	63.9
WP_032427966.1\|3193435_3194389_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	1.4e-131	74.0
WP_151391665.1\|3194397_3194670_+	hypothetical protein	NA	NA	NA	NA
WP_048292013.1\|3194710_3195106_+	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	7.3e-13	43.3
WP_048292014.1\|3195107_3195362_+	hypothetical protein	J9Q7U0	Salmonella_phage	1.8e-20	52.4
WP_004184451.1\|3195371_3195605_+	hypothetical protein	A0A1V0E8A3	Vibrio_phage	1.3e-09	49.2
WP_029602988.1\|3195591_3195975_+	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	5.4e-21	45.2
WP_048292015.1\|3195976_3196528_+	hypothetical protein	G8C7Q1	Escherichia_phage	1.0e-28	40.4
WP_004146196.1\|3196524_3196917_+	hypothetical protein	M4SMU9	Cyanophage	7.3e-05	30.9
WP_048292016.1\|3196940_3198113_+	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	3.2e-24	27.3
WP_040244185.1\|3198166_3198649_+	hypothetical protein	NA	NA	NA	NA
WP_016831940.1\|3198786_3198993_+	hypothetical protein	NA	NA	NA	NA
WP_004217333.1\|3199069_3199426_+	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_032416607.1\|3199536_3199905_+	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	3.3e-15	42.9
WP_048292017.1\|3199978_3202879_+\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	2.3e-103	32.6
WP_032429439.1\|3202878_3203352_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.0e-61	69.2
WP_048292018.1\|3203338_3203821_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	8.2e-83	95.6
WP_048292019.1\|3203830_3204211_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	6.2e-70	96.8
WP_048292020.1\|3204207_3207276_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.3
WP_048292021.1\|3207353_3209546_+	hypothetical protein	B5TAB2	Burkholderia_phage	1.3e-98	36.4
WP_048292235.1\|3209689_3210310_+	hypothetical protein	NA	NA	NA	NA
WP_053065609.1\|3210498_3211623_-	hypothetical protein	A0A248XD67	Klebsiella_phage	6.6e-83	46.9
WP_053065608.1\|3211635_3213624_-	hypothetical protein	A0A286S1R8	Klebsiella_phage	5.7e-21	53.6
WP_048292022.1\|3213715_3214264_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	7.6e-93	97.8
WP_032428262.1\|3214341_3214764_+	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_002901812.1\|3215313_3215733_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_039110604.1\|3215734_3217000_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	7.6e-205	82.0
WP_072041214.1\|3217178_3217988_+	chaperonin	A0A0F7L9X0	Escherichia_phage	1.8e-154	94.1
WP_039110606.1\|3218085_3218754_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.0e-80	60.8

DBSCAN-SWA_6

3477345 : 3486760

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|3477345_3477966_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_032423485.1\|3477958_3479224_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002903955.1\|3479235_3480138_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210513.1\|3480399_3481161_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_001620095.1\|3481181_3482042_-	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_004176262.1\|3482339_3482600_+	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620097.1\|3482686_3483775_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176258.1\|3483805_3485071_-	MFS transporter	NA	NA	NA	NA
WP_162557934.1\|3485125_3486760_-	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.6e-183	56.0

DBSCAN-SWA_7

4496737 : 4503642

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004149058.1\|4496737_4498216_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3
WP_004175198.1\|4498212_4498935_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004144192.1\|4499253_4500615_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004151134.1\|4500857_4501754_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_047669696.1\|4501994_4502768_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-26	36.7
WP_032429748.1\|4502778_4503642_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049605

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP049604

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection