CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049368	Stenotrophomonas maltophilia strain MER1 chromosome, complete genome	7 crisprs	DEDDh,csa3,WYL,cas3,DinG,PD-DExK	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049368_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049368_1

1386081-1386186

Orphan

Consensus_repeat	Method
GCCCCATCCACGCATGGCGTGGATCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049368_1

>merge|NZ_CP049368|1|1386081-1386186|CRISPRCasFinder
GCCCCATCCACGCATGGCGTGGATCTACTGGGCCTCTGGTGGGTGAGGACCTTGGTCCACGCCGCTCTTCGGTGGGAAGCCCCATCCACGCATGGCGTGGATCTAC

>NZ_CP049368|1|1|1386081-1386186|CRISPRCasFinder
GCCCCATCCACGCATGGCGTGGATCTAC	TGGGCCTCTGGTGGGTGAGGACCTTGGTCCACGCCGCTCTTCGGTGGGAA
GCCCCATCCACGCATGGCGTGGATCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049368.1\|WP_165376651.1\|1382791_1384252_+\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_CP049368.1\|WP_165376658.1\|1392156_1393830_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP049368.1\|WP_165376650.1\|1382062_1382788_+\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
NZ_CP049368.1\|WP_165376660.1\|1396969_1397383_+\|MerC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377004
NZ_CP049368.1\|WP_165376648.1\|1376339_1376855_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165376654.1\|1386277_1387876_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349937
NZ_CP049368.1\|WP_108266146.1\|1375549_1376155_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP049368.1\|WP_165376647.1\|1374887_1375448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_089239753.1\|1393829_1394396_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP049368.1\|WP_165376655.1\|1388030_1389434_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP049368.1\|WP_165376657.1\|1390982_1392146_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP049368.1\|WP_165376649.1\|1381169_1382027_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NZ_CP049368.1\|WP_100551973.1\|1376937_1380402_-\|transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118
NZ_CP049368.1\|WP_025879325.1\|1380528_1381074_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP049368.1\|WP_025879333.1\|1389468_1389954_+\|Fur-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223806
NZ_CP049368.1\|WP_165376659.1\|1394637_1396836_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP049368.1\|WP_165376656.1\|1389987_1390659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_025879339.1\|1397493_1397676_+\|30S-ribosomal-protein-THX	unknown	unknown	gnl\|CDD\|293672
NZ_CP049368.1\|WP_165376653.1\|1385657_1386068_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165376652.1\|1384333_1385647_+\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|236960

Protein	Function_ID	Function_description	E-value
NZ_CP049368.1\|WP_165376651.1\|1382791_1384252_+\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_CP049368.1\|WP_165376658.1\|1392156_1393830_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.17465e-15
NZ_CP049368.1\|WP_165376660.1\|1396969_1397383_+\|MerC-domain-containing-protein	gnl\|CDD\|377004	pfam03203, MerC, MerC mercury resistance protein.	2.06753e-16
NZ_CP049368.1\|WP_025879339.1\|1397493_1397676_+\|30S-ribosomal-protein-THX	gnl\|CDD\|293672	pfam17067, RPS31, Ribosomal protein S31e. RPS31, Ubi3 precursor, which is part of mature 60S and 40S ribosomal subunits. It seems that linear ubiquitin fusion to Rps31 and its subsequent cleavage are required for the efficient production and functional integrity of 40S ribosomal subunits.	0.000302494
NZ_CP049368.1\|WP_165376654.1\|1386277_1387876_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349937	cd08015, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	2.45392e-119
NZ_CP049368.1\|WP_108266146.1\|1375549_1376155_-\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.10153e-54
NZ_CP049368.1\|WP_165376650.1\|1382062_1382788_+\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	2.52578e-127
NZ_CP049368.1\|WP_089239753.1\|1393829_1394396_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.55054e-06
NZ_CP049368.1\|WP_165376655.1\|1388030_1389434_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP049368.1\|WP_165376657.1\|1390982_1392146_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.17399e-96
NZ_CP049368.1\|WP_165376649.1\|1381169_1382027_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	2.55275e-126
NZ_CP049368.1\|WP_100551973.1\|1376937_1380402_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP049368.1\|WP_025879325.1\|1380528_1381074_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.23957e-07
NZ_CP049368.1\|WP_025879333.1\|1389468_1389954_+\|Fur-family-transcriptional-regulator	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	5.25908e-37
NZ_CP049368.1\|WP_165376659.1\|1394637_1396836_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.17086e-44
NZ_CP049368.1\|WP_165376652.1\|1384333_1385647_+\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	0

>NZ_CP049368.1|WP_165376653.1|1385657_1386068_+|hypothetical-protein
MSWRQGLQQRARQGIPALLEVDALLQAHGVLAALPGARIAPGLVRFQLAPITCDGLQRRGLDWLREARHGRGALAGKVPRYRPWKAGAAALSEIGIDGLPAEWPEHAAVFGCSSIDQRHWLLLLPERAQLWLGWKG
>NZ_CP049368.1|WP_165376652.1|1384333_1385647_+|cell-envelope-integrity-protein-CreD
MKSLKMLLRFAIVGGLILLLLIPLFLIRSVITERSAYREEAYSRVAESRAGTQRVVGPVRVVPWSKRQQVEVVDAQGNKKTELQTTQGYWLQPPATLQVSGELLPSQRSVGLFKVPVYSWNGQLKATFSEDDYPEHDGTTYGEAYIALGVSDARGLVGTPNLRVDGQQVKLLPGVAGASALGRGLHAPIAGVARSGGTLAASSVELELQLDGSRSLSVVPVGDDNQIALRSSWPHPSFAGAFLPNERRVDAQGFDARWAVSSLASDAQQRLHEGDDLDAQAVQVSLVDPVDTYTQADRASKYGVLFVVLTFVGFILFELIKSLRIHPLQYLMVGLALAIFFLLLISLSEHIAFWQAYLVSALACIGLQAVYLANVLGHWKRGLGFAAMLTVLYGALYGLLVSENNALLMGSLLLFVILALAMWVTRRVDWYALAEQK
>NZ_CP049368.1|WP_165376651.1|1382791_1384252_+|two-component-system-sensor-histidine-kinase-CreC
MRLVLKLFLGFFLIVGIAAFFVMRVFVNEVKPGVRQAMESTLVDAANVLAEMAAADVKAGTIRNGSFTRNLAKARQRDLKAMVWRFPKRALDYRVTITDAKGIVIYDSLGRDVGRDNSRWNDVYRTLRGEYGARSSPETPGDDSNTVMHVAAPVYDPVDGNTLIGVLSLAQPNRSIDPFIAASQRAIIERGAWLIGLSALVGVLVTMWLTNGLGQLSRYARAVSAGEPVPPPKRRNDEIGELGQALETMRRKLEGKAYVEQYVQSLTHEMKSPLAAIRGAAELLQEPMADADRAHFARSIVDQQERLTETIDKLLALAEVEQHGWLQTRDPIALPALLHEAAAAAQVRAQAAGVELHIDQVPDLRVQGDGYLLRQALHNLIDNAIAFSPPGAQVQLDAQVDGQGVRLQVADRGAGIPDYARERVFERFYSLARPGTGRRSSGLGLPFVQEVARLHDGRAGLQPREAGGTVASLWLPLAIPGQRPRR
>NZ_CP049368.1|WP_165376650.1|1382062_1382788_+|two-component-system-response-regulator-CreB
MLRAMTAPVTHVLVVEDEAAIAETVLYALRSEGYAASHCLLGGLALQQLQAGDIDLVVLDVGLPDLSGFEVCRRLRALPGPVAQVPVIFLTARNDELDRVLGLELGADDYMAKPFSPRELVARVRARLRRATPAPAAPGAETGWQEHGAFAIDRDGRRIRFQGHALDLTRYEYALLEALLQRPGAILSRAQLMDRGWDSAADSADRTVDTHVKTLRAKLRAAGASGEPIRTHRGLGYALEV
>NZ_CP049368.1|WP_165376649.1|1381169_1382027_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MNYRHAFHAGNHADVLKHIVQLALIDSFKRKDSPFFVLDTHGGAGRYLLASEESRKTLEVESGVMRLMAQPKLPEVVERYLKAVQADNPVGAMIAYPGSPLLSAQAMRPQDRMAVCELQEDEAASLKTLFAHDSRVGVHPGDGYALLRSLLPPKANGAKIGRGLVLIDPPYEAQDAEYQAVLAALAETLARWPQATCAVWFPIKQRRTILHFLRKAAALPVKSAVTIEFLVRPDDSPLRLNGSGMLVLNAPWQFDRVVGPALPALRQHLGEPGASTRLDWLKTAE
>NZ_CP049368.1|WP_025879325.1|1380528_1381074_-|N-acetyltransferase
MATRNRMPPWHEIFKAPSGHELLIRPIRPEDGAPLQAAFSLFGPEEIRDRFLQSVTELSPETTQRLTHPNPKTEITLVAAESLPAGEAVVGAVARASIIPGTREAEYAILISRFLIGQGLGRQLMRKLVKWGRGKYLDRLYGDVAAENEPMKQLAASLGFKPVPHPNGAEGLVRMVLELDN
>NZ_CP049368.1|WP_100551973.1|1376937_1380402_-|transcription-repair-coupling-factor
MSRTPFPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARTHDAPVLVVARDNHGANQIEADLHTLLGGDPSLPVVAFPDWETLPYDRFSPHPDIISQRLSALHRLPTLKRGLVVVPVQTLLQQLAPRSYVIGGSFNLEVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYPMGADEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDDASIARVLATLRERFDVDTRRSSLYQDLKSGLAPAGIEYYLPLFFERTATLFDYLPAGSLPVVCVGAAEAAETFWTQTGERYEQRRHDVERPLLPPSALYLSPDLLRERLNDAPRIEVWAADHARIAEAHALGDQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVADLLSFLASDERFAIAVAPLEDGFALDAPHIAVLTERQLFPERAGSTRRTRRAGREPEAIIRDLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRYSGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHRLLQPDVKFKDLGMVVVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSELVPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGHLPDIDAGEEARGAEVELHVPALIPDDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKNLFAIAELKLQASTLGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMDGPDKLRVKHPLPLPEDRFNAARALLLTLALR
>NZ_CP049368.1|WP_165376648.1|1376339_1376855_-|hypothetical-protein
MNRFAPLLLATSLGLLAACHSGMSNRDYLHENVASWNGTVSMVEQWTNGPNGESFHASLQDGKSMQQHRFGLKNAHQEIADRLVFVQQFTHGKDADALHQNLLDSLKSTEQMFAVMEQLAALPDGYSEEQVTPLLQTLDEAVTKMDEDMQTLSDAQDAFAKAHRIHLQTSG
>NZ_CP049368.1|WP_108266146.1|1375549_1376155_-|HD-domain-containing-protein
MPLPIPPDLLHAQACLIDALSMSLQMRDAYTRHHCDRVGLLAQHLALHCDLDEEACTQVALAARFHDIGKIGIPDDVLLSPRRHSDEERAIMREHPVRGEHIFLATGRSDAAPVARLIRAHHEAFDGSGYPDGLQGENIPLGARIVTIVDAYDAMTSARPYRAAMEHEKVLRILDEQAGGLIDPYVLQRFHGMLKHEPALV
>NZ_CP049368.1|WP_165376647.1|1374887_1375448_-|hypothetical-protein
MKGNTRIAAPLGLLLLALAPFAQAQQESDAPAATCLSRSQITAGTTPAALMNALPRCVQDGRMQEAIDLYNIAGVFAHFDRQRVADETGHGAYNALKAMAGSAMGEENLGRFDSALKAQLSPDKAPAYVAGICTFSKRVGPPSYTPTYMLAHGMSNFTGTGGGLVPGFDPASAWQATLSQYLKCPG
>NZ_CP049368.1|WP_165376654.1|1386277_1387876_+|M20/M25/M40-family-metallo-hydrolase
MLKWGVLAVALAMGGNAVAQQREPVDLDMVGKIRQQAFHKSQVMDTFSYLTERIGPRLTNSPAMGRANAWTRGKFSEWKLDNVHDEAFDEFGRGWEFTSASVEMLGDRVQPLHALPKAWTPGTRGPVEGELLQVDIKKPEDIEKYRGKLRGKILLLGEAREYKRGTDADSHRHDATSLEGLQEFTLPKDKDVAADRAKRVKEFQEKQALAAKVNAFFVEDGALASISISSWDNGIIRVAGGGSRKAGESVGVPELAMIAEHFNPLVRALEAKQSVRLRVDVAARFTDEADQPGYNTLAEIRGSSRPDEVVMIGAHLDSWHSGTGAADNAAGVAVMMEAMRILKASGAKPKRTIRVALWSGEEQGLIGSQAYVAKHFGRFPEPTDLAQKALPASLREPTGALQKTRDYGKFQVYFNMDNGSGRFRGIYAQENLAAMPIFEAWLAPFHDVGATTVATRNTGSTDHISFDRIGLPGFQFIQDKLDYFSNVHHSHLDTWDHAEPEDLKQAAAIVASFAYHAAMREQSFPRKPEPQP
>NZ_CP049368.1|WP_165376655.1|1388030_1389434_+|glutamate--tRNA-ligase
MTCRTRFAPSPTGYLHIGGARTALYCWLEARHRGGEFVLRIEDTDRERSTQGAIDAILEAMEWLGLDYDEGPFYQTERVARYKEVAEQLIADGKAYYAYETREELDAMREAAMAKQEKPRYNGAAREQGLPYRDDPNRVIRFKNPLEGTVVFDDLIKGRIEIANSELDDMVIFRPDGYPTYNFAVVVDDWDMKISEVIRGDDHINNTPRQINLYEGIGAPVPKFGHMPMILDEQGAKLSKRTGAADVMQYKDAGYLPDALLSYLARLGWSHGDQELFSRQELIDLFDVKDCNSKASRLDMAKLGWVNQHFLKTEEPAAIAPHLVYQLQKLGLDVAAGPAPVDVVIALRERVQTLKEMAEKAVVWYQPLNEYDEAAVAKHFKAGAELPLGKARELLAALPEWTAEAVGVALHDAAAALEMGMGKVAQPLRVAITGTQVSPDISHTVYLAGREQALKRIDVAITKVATA
>NZ_CP049368.1|WP_025879333.1|1389468_1389954_+|Fur-family-transcriptional-regulator
MSAKTACTAPHHHVHDASDFVAVVERVSRERGLRLTPIRANVLKLIAEAGKPVKAYELLEWVRNGKGVGADAPPTVYRALDFLMANGFVHKLESVNAFVACHHPSSAAHSVPFLICNSCHSAVELEDREIVTQLEKRAKELGFQPQAQTLEVHGLCARCAG
>NZ_CP049368.1|WP_165376656.1|1389987_1390659_-|hypothetical-protein
MKFNALARKAAKGPAPLEHGGAIEVEDLIGFVLEHGVEGAAEIERLCALHGWREEFQYNGDGTHFAPMAPWAKACAAVGYGGVAAMQPLLDDPRMATYAIGVLEEVRSEASVTALLAYCGQADFSQDDPTSAPWQALGALNVLLSFDKGVAVSTDIQQTLLQRVQRAWGQAPTPQWQCLALYAVRGAHVAEALDWVQSLVLEDAELIAARKAVLKHLKGRTQG
>NZ_CP049368.1|WP_165376657.1|1390982_1392146_-|HlyD-family-secretion-protein
MPPVPPRPDDTDAAENVTPPPPTDAAPAATPAAPAAAPKYLKPSSRSVVVMVVVALLGIALILRAWHLWPFTSSVMVTDNAYVRGQITVMAPQVNGYVTDVLVKDFQHVKQGEPLLRIDDRIYAQRVAQAQATLDSARAALANSDQSQAQNRAQIASAQATLSAGQAELQRSRNEAKRYEELAAQQLVSINDRDKFRTTQASAQASVQQSQAQIRIAEETLVSTQVSRKSLEAQVESAQAQLELARIDLANTVIHAPRDGQISEASVRVGQYVAAGSQLLFLVPDALWVVANYKEGQTWQMAIGQPASFSVDAFQGQVLRGRVEQIAPATGSEFSVLRPDNASGNFTKVVQRLPVRISINGEQQLAARLRPGMSVIVRVDTATKPMD
>NZ_CP049368.1|WP_165376658.1|1392156_1393830_-|MFS-transporter
MVQPYLKPVPDWEEHEKPTMPGSASMPWHPPYRRAAYALVSLLVAITGGLGNALVTANLPFLQGQLSLTPTQGSWLVAAYAMVNVTANLLAFKFRQQYGIRLFAEIGLGLYAALAVLHLFVGSFETTMLTRAASGFAGAACSTLGTLYMLQALPRRFTGNLLVVGVGLSQLAVPIAWIVSPGLVDTGQWHQLYSFEAGLALCAFAAVVVLKLPPGIQVKAFEPLDFLTFALLAPAVALLVIVLAQGYTRWWLNTPWLGWALIASIALTTTALIIEHYRRNPLLQIRWLSTLPVMHFIVGAFLIRFLTTEQSYGVVNLMRTLGMGPDQMRPLFVVILAGVVTGIAGAAITFGPKRLIAQLLLAILLLGAAAFFDQHRTSMDRPHDFYVSQFLASVGAGMFMGPLIMLGISAALKQGVDHMITFLVTLSITQTLGGLAGSAVLGTFQLHREQLYSSALTSQLDPADPVVAQRLRIQQQLYAAQITDPVLRSAQGSAQLAQTTRREANVRGFNDVFTLSGWLAIGFLCWLLLLSLRTAVRKQWRKRHPSSPAAAATAAPR
>NZ_CP049368.1|WP_089239753.1|1393829_1394396_-|TetR/AcrR-family-transcriptional-regulator
MTTQRADAAARRALILDAADHVFGQHGVTAPLDLVVERAEVGRATLYRNFPDRTALIQALLQRTVDRIRRQVEQLGDRDDALFEVFEGMAQRIIDSPALADYWRAVDSDVPAMRTARETVRDLLEAPIARAKAAGLCRPDLEKTDISLISGMLGAALRGKTRDERAQLAGRALQLLRGGLQGAASGER
>NZ_CP049368.1|WP_165376659.1|1394637_1396836_-|TonB-dependent-receptor
MPSHHPRFKPHSLALALAALLPSVAFAASDDDSHRDRHLTELSSVQVTASPLQGDAESLARPVEVLAGERLDEQKAGTLGDTVAKLPGVQSTFFGPGVGRPIIRGQEGPRVAVLSNGMGNMDASTVSADHATSIEPFLADQIEVLKGPATLLFGSGAIGGAVNVVDGRIARELPDRPLSGRAELRGNSVNDERSGMFRLDGVSGNVVLHVDGLVRNGDDFRIPGYAVIDGLEDHHDDHDHAGEEGEEPRRGRLDNSSIRTRAGGVGATWLGEGGYFGVSASTYRTNYGIPNGAHVHADGDGHDHGHDHDHGEEEEGEEHDVRIDMVQNRFETKAGIYNPVSFLKNINARVAYTDYEHVELEAGTPSTRFTNRGIEGRLEAVQQQIGGWDGAFGLQVGNSDFGAKGEEAFVPDTGTKNIGVFVLQEKQFGPFKLELGGRHDQVKLDPTGDYQRRKFDATNLSAAGIWKLNDAVDLRIGVDSSERAPTNEELYAAGAHIATRSLEIGDANLKTERGQRIELGIHTHSERLDFSAAIYQTKFKDFIYLADTGVTESLPVRAWTQQDAVFKGAEAEALVHLFEGVAGDWDLRVFGDYVQAKLDGSGNRNLDIAVPHGDHNHNYSVELANTGYLPRIAPARVGADLRWAKDGWRASVGAVRYSRQKDVAQNEEPSSGYTLVDAHLAYRWDRSDSNSYELFLDGSNLTNREVRPHTSLLKDYSPLPGRGVAFGIRAFF
>NZ_CP049368.1|WP_165376660.1|1396969_1397383_+|MerC-domain-containing-protein
MPLPSRLRHLLDRFGATGSMLCAVHCAVIPLLLAAAPSLGLSFWLSDGVEKALVVFVSLLGLFSLVWGYRRHGALRALAFLIPGLVALWTGVLYDPLHHNAVPHAVVMTLGGLLVGIAHLVNLRLNHGHVHDASCAH
>NZ_CP049368.1|WP_025879339.1|1397493_1397676_+|30S-ribosomal-protein-THX
MGKGDRKTAKGKRYNASYGNARSHTASKVAVGAAAPVAKKTVAKAPAKKAVAKKAVAKAG

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Crispr_ID: NZ_CP049368_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049368_2

2063384-2063483

Orphan

Consensus_repeat	Method
TAGGTGTGGACCTTGGTCGACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049368_2

>merge|NZ_CP049368|2|2063384-2063483|CRISPRCasFinder
TAGGTGTGGACCTTGGTCGACACGGGGGCGCCAACCAAGGTTGGCGGCTACCAGGGCGTCGGTGCCGCGATATCCGGTAGGTGTCGACCTTGGTCGACAC

>NZ_CP049368|2|2|2063384-2063483|CRISPRCasFinder
TAGGTGTGGACCTTGGTCGACAC	GGGGGCGCCAACCAAGGTTGGCGGCTACCAGGGCGTCGGTGCCGCGATATCCGG
TAGGTGTCGACCTTGGTCGACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049368.1\|WP_165377045.1\|2073502_2074975_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_CP049368.1\|WP_165377033.1\|2049705_2052585_+\|DUF2135-domain-containing-protein	unknown	unknown	gnl\|CDD\|378008
NZ_CP049368.1\|WP_165377038.1\|2058859_2059723_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP049368.1\|WP_165377048.1\|2077451_2080205_-\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NZ_CP049368.1\|WP_089240946.1\|2065358_2066504_+\|two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|225971
NZ_CP049368.1\|WP_165377043.1\|2069811_2071488_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|181546
NZ_CP049368.1\|WP_165377041.1\|2066500_2068672_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP049368.1\|WP_165377039.1\|2060257_2061649_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NZ_CP049368.1\|WP_089240944.1\|2063642_2065154_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP049368.1\|WP_165377040.1\|2061724_2063365_+\|acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236239
NZ_CP049368.1\|WP_165377046.1\|2075015_2075606_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_CP049368.1\|WP_165377036.1\|2055394_2056252_+\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NZ_CP049368.1\|WP_099818762.1\|2056342_2057468_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|136970
NZ_CP049368.1\|WP_135274296.1\|2058569_2058863_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP049368.1\|WP_165377035.1\|2054017_2055220_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|235167
NZ_CP049368.1\|WP_165377047.1\|2075776_2077327_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP049368.1\|WP_165377034.1\|2052676_2053834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165377042.1\|2068777_2069650_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|236338
NZ_CP049368.1\|WP_165377044.1\|2071718_2073401_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP049368.1\|WP_165377037.1\|2057567_2058350_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319

Protein	Function_ID	Function_description	E-value
NZ_CP049368.1\|WP_165377045.1\|2073502_2074975_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_CP049368.1\|WP_165377033.1\|2049705_2052585_+\|DUF2135-domain-containing-protein	gnl\|CDD\|378008	pfam08487, VIT, Vault protein inter-alpha-trypsin domain. Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumor metastasis as well as in plasma protease inhibition. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N-terminus of a von Willebrand factor type A domain (pfam00092) in ITI heavy chains (ITIHs) and their precursors.	9.82326e-30
NZ_CP049368.1\|WP_165377038.1\|2058859_2059723_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.25437e-57
NZ_CP049368.1\|WP_165377048.1\|2077451_2080205_-\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP049368.1\|WP_089240946.1\|2065358_2066504_+\|two-component-system-response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	2.40436e-132
NZ_CP049368.1\|WP_165377043.1\|2069811_2071488_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|181546	PRK08751, PRK08751, long-chain fatty acid--CoA ligase.	0
NZ_CP049368.1\|WP_165377041.1\|2066500_2068672_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	4.36333e-83
NZ_CP049368.1\|WP_165377039.1\|2060257_2061649_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NZ_CP049368.1\|WP_089240944.1\|2063642_2065154_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP049368.1\|WP_165377040.1\|2061724_2063365_+\|acetolactate-synthase-large-subunit	gnl\|CDD\|236239	PRK08322, PRK08322, acetolactate synthase large subunit.	0
NZ_CP049368.1\|WP_165377046.1\|2075015_2075606_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	6.1598e-101
NZ_CP049368.1\|WP_165377036.1\|2055394_2056252_+\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	5.18159e-31
NZ_CP049368.1\|WP_099818762.1\|2056342_2057468_+\|peptide-chain-release-factor-2	gnl\|CDD\|136970	PRK08787, PRK08787, peptide chain release factor 2; Provisional.	0
NZ_CP049368.1\|WP_135274296.1\|2058569_2058863_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	3.596e-06
NZ_CP049368.1\|WP_165377035.1\|2054017_2055220_-\|acyltransferase-family-protein	gnl\|CDD\|235167	PRK03854, opgC, glucans biosynthesis protein MdoC.	5.35534e-11
NZ_CP049368.1\|WP_165377047.1\|2075776_2077327_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP049368.1\|WP_165377042.1\|2068777_2069650_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|236338	PRK08788, PRK08788, enoyl-CoA hydratase; Validated.	7.2872e-134
NZ_CP049368.1\|WP_165377044.1\|2071718_2073401_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP049368.1\|WP_165377037.1\|2057567_2058350_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	2.39313e-43

>NZ_CP049368.1|WP_165377040.1|2061724_2063365_+|acetolactate-synthase-large-subunit
MSKGSDLLVAALENEGVERIFGIPGEENLDVVESLRHSSIELVITRHEQAAVFMAATYGRLTGKPGVCLATLGPGALNFTTGAAYALLGAWPVIMITGQKGIVASKQARFQIVDIVSTMKPLTKSARQIVSARTIPTIVREAFRTALEERPGPVLLELPEDIAAMEVEDAALIPPHPVDRPIASPEALDRAAQIIRDAKRPLLVIASAASRPQSSEALSAFVLRAGIPFVTTQMGKGAVAGGSGLYMGTAALSERDYVHMAIDQADVIVTIGHEVTEKPPFVMRPGGRTVIHIGYSQAAVEQVYFPQVEVIGDIGRSLTLLADRIEGNVDNAAALLPLRATILEHIADRAEEAGFTPQRLVHDVRQVMPPDGIVALDNGMYKIWFARNYRTQVANTLLLDNALATMGAGLPSAIMASILYPQRRVLAVCGDGGFMMNSQELETARRLGLNLVVLILNDGAYGMIRWKQAVDGFADYGMTFGNPDFVKYAEAYGCQGHEVTAIEQFIPTLEAAFTAGGVHLVSVPIDYSENQRVLVDELRQAFPGNG
>NZ_CP049368.1|WP_165377039.1|2060257_2061649_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MSASPAAPAAISRDPATGQQIASHPFATAAELEAILDRGQAGFAAWSAQSLEQRASVLRAMAAVLRRDREPLAALATAEMGKVHVESLAEIEKCAVLCDWYADNGAAFLRDEPTAVADNKAYVSYLPLGVVLGIMPWNFPYWQVMRAAVPILMGGNGFLLKPAENIVGTAALLAAAWRDAGLPEGTFIAANISREGTSAAIADDRIAAVTLTGSVAAGRSIAAQAGQALKKVVLELGGSDPFIVLADADLDAAVDAAVASRFQNTGQVCIAGKRIIVEAPVYERFVALFCERVQALTVGDGREAGNRIGPMARQDLLEQLDAQVRASVAAGAQLLVGGKQLDRPGSFYAPTVLAGVEPGMQAFDTETFGPVASISRARDADHAVDLANQSEFGLSGNLWTGDHARAMQLARRLQTGGVFVNGFSASDPRVPIGGVKKSGFGRELSHFGIREFVNAQTVWFDRR
>NZ_CP049368.1|WP_165377038.1|2058859_2059723_+|IS3-family-transposase
MRYAFVASHRTRYPTRVLCRVLGVSVSGFHDYLRRQSANTHDADAVLRAELRAIHAASNCSYGRHRLVRALRARNHPIGHKRVARLMAEERIRGNIKGRFRPKASLGGSSQLAPNLLDRQFAAGTGPTAWVGDITYVATRQGWLHLAVVISVQTRQVLGYSVSERMTEDLVVKAFANAWALHPQRPGLIFHSDRGGQYWGNEFRQLLQSHGVVQSMSRRGNCWDNAVAESFFATLKTEEAAQPYSSREQASQSIAAYIHGFYNPARLHSALGYQSPNTYARQLKAAA
>NZ_CP049368.1|WP_135274296.1|2058569_2058863_+|transposase
MSHITRRSYTDEFKHQAVELAESLGPAAAARQLEMSVKTLANWVDAVRAGRSLTSEARRPATDLESEISRLRAENANLRMEREILKKAAAFFAKESK
>NZ_CP049368.1|WP_165377037.1|2057567_2058350_+|helix-turn-helix-domain-containing-protein
MMRSEAERKELGGFLKACRARVEPATLGLPAGRRRTPGLKREEVALAIGVSVSWYTWIEQGREVRASPEVLERLAQVLRMSDDERAYAFALSGYGVPLESPDETVTDGLRQLVEAMQPIPAYVRNTRFDILAWNPAIADLFVDYGQLAPHERNTLRLMFLYPPYRTLILNWEEMTRGLLASFRAAMAQAPDKAPFLALAEDIGTHSEQFRQWWPEHDVRRFDEGAKRLNHPTRGLLDLQYVALVPESRHDLSLVTYLPRR
>NZ_CP049368.1|WP_099818762.1|2056342_2057468_+|peptide-chain-release-factor-2
MIELNPVRQRIADLTDRVLSLRGYLDYDAKKERLEEVTRELESPDVWNNAEYAQNLGRERSTLEKTVGGIAAVLEGLSDATELLELAESEQDEDTALAVVADLDKHQAHVEKLEFQRMFSGQMDTAPAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRVEGDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDNNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAERDAVEATKSDIGWGSQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGLAVGSKRIDA
>NZ_CP049368.1|WP_165377036.1|2055394_2056252_+|LytTR-family-transcriptional-regulator
MAKGSPTRWRTSTRLLLWAAILSASAVTNALVEVMDASRRGADLSLWEPMIWEFSSLSLILLTLPLLWWGCERWPLHADTWKRRLPLYLLASVAWSLLHVVGMMLLRHLAYAALGYRYQDDAGWLERFAYEYLKDVRTFAMFVALEHFASWFGRRRQGEARLLAAPDEGPPVEPVDRPDHFLVRKLGKEFLVATADVEYAQAAGNYVNLRVRGHDYPLRITMAVLEARLDPVLFLRSHRSWLVNRDQLRSIEPLDGGEALLHMADGARVPCSRRQLPLLRQALGG
>NZ_CP049368.1|WP_165377035.1|2054017_2055220_-|acyltransferase-family-protein
MNRRHDIDALRVFAFALLILYHTGMAYVDDWGFHLKSVHTAEWLQWPMVFVNRWRMSLLFLISGVAIALMRPETKPLRFAGLRTWKLLLPLLFGMFVIVPIQPYCEGVANGHVAPGFGHFLLRYWQVRPWPEGSFAGWQYGITWNHLWYLAYLWNYTLVLALLMPLLRTAVVRRGIERMAASPTLLIGIPSALLLAWVVWLEPIYPSTNALLGDWYQHAKYATVFLAGYLLGREPVFWERVVALRRTTMWLALTAVGWYMGLRILGQVLSEDSPLRQWPEPFWDLQVRTSQSLYVWTALLAILGWGKVFLDRPFRWLPYCTEAIYPWYMLHQSLIIVLLFWFKPLQLGPWAEPALLLVGTVGGCLLIHELLVRRVRWLRPLFGLRAAPLSPPAVRAVPAR
>NZ_CP049368.1|WP_165377034.1|2052676_2053834_-|hypothetical-protein
MEQSDINLLVAFIESEDDAIAEQRQGELYPQRHYELAALAPKAGRGLAGHELQRFYFHWLRVGDWKVAGLPEKDLRVLVAAYRNLTKLPIDYYTRRSSLSLERLFCFGFNEHGELPSGAVTSAAELKQRARLVEHCKKYQSFHAQREKVEKFLPYRSLAPTILETSRFLQHDIEGMGPTLYWGMALIAQLNEETRIQMANDLMSRTWPGDRNRDHALSVLYKTTEAARPHCAENTEYDLLCEHLAQLHDIRIMAGDAVQLVQQQGWQVENIRDWSAGITLYHDGEYSSERGHPRIRLNLNSWPDSPWSINLSCGDGSYVAYRDEPTSNDFQLPPIIGATLDCFPEWIKQINAQLGINLIPGTESVASAYKNRALARQLDAWMRGK
>NZ_CP049368.1|WP_165377033.1|2049705_2052585_+|DUF2135-domain-containing-protein
MVFARCCTVLLLALATWPASPQATRRPAPPMTSTPLLIAPAAEQPVQLRQARIEGEVQAGIAQTRITLEFHNPNQRVLEGELQFPLGEGQQITGFALDINGELREAVPVPKDRGRQVFEEIARRGVDPGLLEQTAGNQFRLRVYPLPAGGSRRVQLVVREPLAYAGQGWRWTLPLQFVAGAAAVELDVQASKGTDTGSAPFRIADGRLHWQGRGTQLPAQLQWTLPAERKAQVQVARWQDGHYLLAQLPVPTSAAPRRVPSEVGLLWDGSGSAGQRDRTREFALLDRYFAAMGEGNVALTVLRDRAEPVRRFRIRSGDWSELRRALMAVQPDGASALAQWQPQPEVKEYLMVSDGLLTYGPEALPALAADQRLFAISSAGARTDVTRLRGWSEAHAGTFVALGSDIDAAARELLSVPLDVQIDAGRGVQDVVIDRRSQAQGWLWLHARLAAEGVPMRVRVAGGEWQALPATQKSEDGDLLAGLWAQARLQQFSTDRRSNREAMQRLSQQFSLVGPDTSLIVLETLDDYLRYAIRPSGKLRAEYDQRFARQVADRDAADRQRLDKVVTQWQQRQQWWNRSWPKGAPPQSDSKALEMAAGAPPAPVAMLAAPAPAAAEMQLNAATARQRSVARPAPAPAPMQEVAADAMAAGPAAANDGQLGIRLAAWQSDSPVARRLRQGPSSQLYDRYLAERAANANSSAFFLDVADLLIEQGQRDLALRVLSNLAEMELDNRHLLRVLGYRLLQADAPVLAVPVFEQVLAMGQEEPQSFRDLGLALAAAGKPQQALVPLHQVVVRPWDARFDGIALIALDELTNLVAGSKPRLDTRGIDPRLLQAMPLDLRVVLAWDADNSDMDLWVTDPNGERAYYGNRLTYQGGQMSQDFTGGYGPEQFSLRNAKPGKYKVEANYFGSRQQLVTGATTLMLRLTTHWGTPKQKDQMVTMRLKDRAETVLVGEFEVR
>NZ_CP049368.1|WP_089240944.1|2063642_2065154_+|lysine--tRNA-ligase
MSEATDTPPVDENKLIAERREKLKALRGQGIAYPNDFRREDFAGSLQDEFADAEQWTAETLEGNGRQVKMAGRLMAKRVMGKASFAQIQDESGRIQLFLQGSVLGDAYTAFKGWDVGDIIAVEGGLTRTKTGELSVKAESIRLLTKSLRPLPDKWHGLADVEQRYRQRYVDLIVTPESRAVFIKRSKIIRAMRAWLDNRDFLEVETPMMHYIPGGAAAKPFTTHHNALDLDLYLRVAPELYLKRLTVGGLERVYEINRNFRNEGVSTRHNPEFTMMELYEAYATYNEIMDLTEGVIRDVAQSVNGSTTVEWDGANIDLGPAFRRWRMDEAVRHHNPEISAADCTDRDALLRHCERLKIRVKPSYGWGKLLLEIFEATVEHTLIQPTFITDHPVEVSPLARANDNDPGYTDRFELFVNGKELANGFSELNDPEDQAQRFQAQVAAKEGGDDEAMHYDADYIRALEYGMAPTGGLGIGVDRLVMLLTGSSSIRDVLLFPYMRPEQ
>NZ_CP049368.1|WP_089240946.1|2065358_2066504_+|two-component-system-response-regulator
MQGASVHSGGVSSPADLSAWSRKQAENALNIVIVDDQTSARTMLRHVIEDIAPELSVHDFGDPLTALAWCESYPVDLLLLDYRMPEMDGLEFARRFRRLPKHRDIPVILITVVGDEPIRQAALEAGVIDFLVKPIRPRELRARCYNLLQLRQQTENVKQRALSLEQRLLASMHEVEERERETLSRLARAIEFRDAGTSAYLERMARVAGLIAEQLGLPEDDVKLIEMAAPLHDMGKIAIPDAVLLKQGKLNDEELAIMRRHPRIGHELLSGSQNRFIQVGALIALRHHERYDGSGYPDGLVGDAIPLEARIVAVADVFDALISPRPYKEAWTMEATMAYLYAQRGRLFDPRCVDALLRGREQLEQICAEHSIASARPGLGA
>NZ_CP049368.1|WP_165377041.1|2066500_2068672_+|response-regulator
MKRLLSRLRLRLSQRQDSEHGQQIVRIILISLILAYVLLPSARHELPHSQYVGVLAIVLTGLSLSLLLFGWLLWRPQRSDPRRVLGMLADYGLIAAGMIQMGEPLSWVYIVVMWVTVGNGMRFGNHYLYVAVAMAMVSFGSTALSTPYWQQNARLAIGLWLGLAAVPLYFSTLLRQLTEAMAEARRASEAKSRFLANMSHEFRTPLNGLNGMTEVLATTRLDDEQRECVSTIQASSRSLLALVEEVLDISAIEAGKLRVVAEDFVLSEVIQAIGLILLPQAKAKRLDYRVKVAETVPPTLRGDVGHLRQILLNLAGNAVKFTDHGRVEIRVCVVHADTQGGVRLRFDILDTGIGVAPAMRPRLFEAFEQADVSMARRHEGTGLGTTIAKGLVEAMDGEIGYLDNPPQGSHFWVELPFAPPQPVVPGAVPTLAAGDEADAGGNVIAFADPFLRHRARVRSMQILVADDHEANRMVLQRLLQKAGHKVLCVDGGEAVLDALAESEFDAAIVDLHMPGMSGLDMLKELRVMQAGGGPRTPVLVLSADVTPEAIQRCTQAGAHAFLAKPVVAVRLLDTLAEIANNAQLKSSAPPIVRTVTNLDGVLDTGVLDELASLGMGEGFEREFIRQCLDDAESCLRKAEGDGEAARWDAFREQSHAIKGVASNLGLVRASNRAGELMRMADWQLKAEWRQRLAVLQGAIKEGRQALYARAERKARGVADDGER
>NZ_CP049368.1|WP_165377042.1|2068777_2069650_-|crotonase/enoyl-CoA-hydratase-family-protein
MSTIEKLPSSGSPYATIRTQDSADGAAHWLFMHADASTGVRPCCRKDMLDEMWSYMSAITRGPAQRHSGQLRHFVLASDAAAYNLGGDLDLFTRLIREGNRDLLLTYAQRCVEGVHHLHTGFGGDVRSIALIQGDALGGGLEMALACHTIVAEEGCGMGLPEVLFGLFPGMGAYSFLCRRVSPQLAEKIILDGRVYSAEEMHAMGVVDVLVRKGEGRGAVEAMIRQQQRLPQSYLAMNAARNLAQAVSYDELLEITKVWVDSALALGDRSLRTMDRLIKAQTRRANLDVA
>NZ_CP049368.1|WP_165377043.1|2069811_2071488_-|long-chain-fatty-acid--CoA-ligase
MSLDRPWLQSYPKGVPAEIDVNEFHSVVSVFDASVAKYRDRPAYSSFGKTLTYGETDALVEQFAAYLLGELKLKKGDRVALMMPNCLQYPVATFGVLRAGLTVVNVNPLYTARELKHQLVDAGVTALVVVDNFGDTVEQVIADTQVKQVITTGLGDLLGAKGAIVNFVLKYVKKMVPNYHLKGAIRFKQALKLGSRHTLPKVEIDHDDVAFLQYTGGTTGVAKGAMLTNRNLIANMQQASAWISASGIEMGKEWIITALPLYHIFALTANGLVFMKFGGCNHLITNPRDMKGFVKELKSVRFTAITGVNTLFNGLLNTPGFDTVDFSSLKVTLGGGMAVQRAVAERWKKTTGVTLVEAYGLTETSPAACINPLTLAEYNGSIGLPIPSTDACIKDDNGNILALGEVGELCIRGPQVMKGYWQRPEETAKAIDADDWLHTGDMAKMDEHGFFYIVDRKKDMILVSGFNVYPNEVEDVIAMMPGVLEVAAVGVPDEKSGEVVKVVIVKKDPNLTAEMVKEHARANLTGYKHPRIVEFRKELPKTNVGKILRRELRDTPAP
>NZ_CP049368.1|WP_165377044.1|2071718_2073401_-|choline-dehydrogenase
MSTHNEYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYKTDPEPFMNNRRMDCGRGKGLGGSSLINGMCYIRGNAMDYDNWAGMPGLEDWAYLDCLPYFRKAETRDIGANDYHGGDGPLRVTTPKAGNNELFAAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLDLAKPRPNLTIVTHALTDRILFSGKRAVGVQWLHNDQPQRATARREVLLCGGAIASPQILQRSGVGPADLLRSLDIDLVHHLPGVGANLQDHLEMYLQYECKKPVSLAPALKLYNQPAIGAEWLFLGTGIGASNQFEAGGFIRSDAEFDWPNLQYHFLPVAINYNGSNPIKAHSFQMHVGSMRSPSRGRIHVRSKDPREDPSILFNYMSHDQDWREFRSAIRITREIFAQPALAPYSGREISPGSALQTDAQIDAFVREHAETAYHPSCSNKMGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVTGNLNAPTIMIAEKLADVIRGRTPLPRSTAPYYKANGAPVRKQG
>NZ_CP049368.1|WP_165377045.1|2073502_2074975_-|betaine-aldehyde-dehydrogenase
MTTLPVQQLYIHGRRVDATSGKTFQSINPATGQVLADVQIASQADVERAVESASEGQKVWAAMTAMERSRILRRAVEILRERNDELAHLETLDTGKALAETTTVDIVTGADVLEYYAGLATAIEGIQLPLRESSFFYTRREPLGVVAGIGAWNYPIQIAMWKSAPALAAGNAMVFKPSEVTPLTVIKLAEIYTEAGVPDGVFNVVQGPGREIGNWLTEHPVIEKISFTGGVATGKKVMASAASSSLKEVTMELGGKSPLVICDDADLDRAADIAVMANFFSSGQVCTNGTRVFVPRSMLAAFEAAVVERVKRIRIGDPMAAETNFGPLTSFPHMENVLRFIESGKSEGARLLTGGGRATDGALADGAYVLPTVFSDCRDDMTIVREEIFGPVMSILAYDDEDEVVRRANDTTFGLAAGVVSKDISRAHRIIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGISTLGHYTRIKSVQVELGDYASVF
>NZ_CP049368.1|WP_165377046.1|2075015_2075606_-|transcriptional-regulator-BetI
MPKKGVEPVRREQLIRATFQTIDEIGMADATVATIAKKAGLSSGIVAHYFGDKDGLLNAAMRQILRELKAAVARYRDAAPGDARSQLRAIVDGNFDDSQTNGTAMRVWLTFWAASMHQPELTRLQRANDQRLFSNLCHQFNRQLPHAQARLSARGLAAMIDGLWLRGSLVGGDFNADKARRIAYGYIDFQLQANAP
>NZ_CP049368.1|WP_165377047.1|2075776_2077327_+|BCCT-family-transporter
MSSLAHPKRSPLRLNRFVFFSSSVSIGILGALTVFFPQASEHWLQWAQAEVSAAFGWWYMLLIVACLGFVLWLAFSPYCRIRLGHNEESPAFGYVAWVSMLFSAGIGIALLYYGAYEPLDHFLNPPGQPGGTVAAGREAMVLTFLHWGLHGWALYALVGVALGYFAYRRNLPLALRSALYPIFGERIHGRIGDMVDGFGILATLISMVTNLGIGALVVQSGLVYLFHIPDTPQVLVAIVLVMMVVATIGVVAGVEKGIAWLSNLNVRLLCLLLLFVLVTGPTLHLFDGLVQNTGDYLGAFVRKSFDMYLNDPKGREWMGSWTLFYWAWWIAWAPFVGLFVARISRGRTIREVIMGVLLIPLGFTLAWLSIFGNTAIDLVLNHGQAVLGEVAQHDAAMTLFKLLEYLPAAPYIAGAAVVIGFVLFLTPVDSGTLMIANLCTRRVDDGVEDGHDAPIWLRVFWAAGITVASVGLLLAGNFSAMQTAVVLCGLPFSFILAFYMWGLLKALRTDPDAPRR
>NZ_CP049368.1|WP_165377048.1|2077451_2080205_-|aconitate-hydratase-AcnA
MSDSFSTRSQLDVGGNTYDYFSLPKLGQRFDISHLPYSMKILLENLLRHEDGGVTVGKDHIEAVARWQPSAEPDTEIAFMPARVVLQDFTGVPCVVDLAAMRDAVVKLGGRPEQINPLIPSELVIDHSVQVDVFGKPDALDLNGKIEFQRNQERYGFLRWGQKAFDNFKVVPPNTGIVHQVNLENLARVVMTADKEGKAIAYPDTVFGTDSHTTMINGIGVLGWGVGGIEAEAAMLGQPSSMLIPQVVGFKLTGKLPEGATATDLVLTVTQMLRKLGVVGKFVEFYGDGLQHLPLADRATIGNMAPEYGATCGIFPIDNESLTYLRLSGRSEEQIALVEAYAKAQGLWHDANSPHAQYSTTLELDMGTVKPSLAGPKRPQDRVLLEDVQKNYRDALVGMTANRDKRSEDVSTFVNEGGGAAVGNEQLAKGYADIEMDGRKVRLKDGAVVIAAITSCTNTSNPAVMIGAGLLARNAAAKGLDRKPWVKTSLGPGSRVVTDYLEKAGVLTELEKIGFYVVGYGCTTCIGNSGPLPTEVSAGIASGDLVVTSVLSGNRNFEGRVHPEVKMNYLASPPLVVAYAIAGTTDIDLTTEPLGTGSDGQPVYLRDIWPSNKEIGDVIAATVGPEMFKQNYADVFKGDTRWNTIASPDGDLYAWSDASTYIKNPPYFDGMTMQVGTIDDVHGARVMGLFGDSITTDHISPAGNIKKDSPAGRFLQERGVQPADFNSYGSRRGNDDVMVRGTFANIRIKNLMFGGEEGGNTLYYPTNSGQPEKLAIYDAAMKYKADKVPLVVLAGKEYGTGSSRDWAAKGTLLLGVKAVIAESFERIHRSNLVGMGVLPLQFRNGENAQSLGLDGSEVIDVTGLQDGASKRATVTATKADGTKKTFEASVMLLTPKEVEYFRHGGLLQYVLRQLAAR

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Crispr_ID: NZ_CP049368_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049368_3

2164697-2164812

Orphan

Consensus_repeat	Method
TGCCGACCTTGGTCGGCACTGACGCCTGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049368_3

>merge|NZ_CP049368|3|2164697-2164812|CRISPRCasFinder
TGCCGACCTTGGTCGGCACTGACGCCTGCACTCGCGATCATCCACACATGGCGCGGATCTACTGAAGGAGCCTAGCTCTGGTGGGTGCCGACCTTGGTCGGCACTGACGCCTGCAC

>NZ_CP049368|3|3|2164697-2164812|CRISPRCasFinder
TGCCGACCTTGGTCGGCACTGACGCCTGCAC	TCGCGATCATCCACACATGGCGCGGATCTACTGAAGGAGCCTAGCTCTGGTGGG
TGCCGACCTTGGTCGGCACTGACGCCTGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049368.1\|WP_165377088.1\|2156553_2157771_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|340419
NZ_CP049368.1\|WP_165377090.1\|2161893_2164653_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP049368.1\|WP_165377091.1\|2164840_2165365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165377093.1\|2166456_2167647_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP049368.1\|WP_165377094.1\|2169566_2170028_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP049368.1\|WP_025879113.1\|2155821_2156127_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP049368.1\|WP_089241076.1\|2167816_2168431_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP049368.1\|WP_165377087.1\|2155089_2155746_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
NZ_CP049368.1\|WP_089241055.1\|2154010_2154955_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|223905
NZ_CP049368.1\|WP_165377096.1\|2171004_2171817_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	unknown	unknown	gnl\|CDD\|226100
NZ_CP049368.1\|WP_025879127.1\|2170631_2170958_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|225038
NZ_CP049368.1\|WP_089241062.1\|2157867_2159643_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP049368.1\|WP_165377095.1\|2170029_2170518_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_025879114.1\|2156123_2156462_+\|flagella-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165377089.1\|2159647_2161750_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP049368.1\|WP_089241078.1\|2168427_2169570_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP049368.1\|WP_049467362.1\|2171955_2174238_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP049368.1\|WP_165377092.1\|2166142_2166358_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_089241053.1\|2153461_2153857_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
NZ_CP049368.1\|WP_025879109.1\|2153050_2153458_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183634

Protein	Function_ID	Function_description	E-value
NZ_CP049368.1\|WP_165377088.1\|2156553_2157771_+\|PAS-domain-containing-protein	gnl\|CDD\|340419	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.	4.70872e-52
NZ_CP049368.1\|WP_165377090.1\|2161893_2164653_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	5.35446e-107
NZ_CP049368.1\|WP_165377096.1\|2171004_2171817_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	3.31807e-74
NZ_CP049368.1\|WP_165377093.1\|2166456_2167647_-\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	2.50536e-31
NZ_CP049368.1\|WP_165377094.1\|2169566_2170028_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	6.67746e-71
NZ_CP049368.1\|WP_025879113.1\|2155821_2156127_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	2.4414e-13
NZ_CP049368.1\|WP_089241076.1\|2167816_2168431_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	1.35251e-83
NZ_CP049368.1\|WP_165377087.1\|2155089_2155746_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	1.03281e-100
NZ_CP049368.1\|WP_089241055.1\|2154010_2154955_-\|chemotaxis-protein-CheV	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	1.11218e-37
NZ_CP049368.1\|WP_025879127.1\|2170631_2170958_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|225038	COG2127, COG2127, Uncharacterized conserved protein [Function unknown].	2.6241e-43
NZ_CP049368.1\|WP_089241062.1\|2157867_2159643_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	8.93584e-97
NZ_CP049368.1\|WP_049467362.1\|2171955_2174238_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP049368.1\|WP_165377089.1\|2159647_2161750_-\|PAS-domain-S-box-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.95761e-41
NZ_CP049368.1\|WP_089241078.1\|2168427_2169570_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP049368.1\|WP_089241053.1\|2153461_2153857_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	4.23991e-78
NZ_CP049368.1\|WP_025879109.1\|2153050_2153458_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183634	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.	9.78295e-80

>NZ_CP049368.1|WP_165377090.1|2161893_2164653_+|EAL-domain-containing-protein
MDQGIIASLLQHPLASALVIVDRSGRPLAANPAAREHGLPATVAAYAPMLEDLRLLAADGGIVACTLPGGPRGHYDGHLRAVHDGSGNLLAFTLSVPEPVPVDGGGRWELALDSAGHSLWDWDIPSDRVARTPALGEETATQILARVHADDITQVRAALDEHLQGGSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQLEAMLQEQQLHLREAQRIASMGSWSFDPHSRHFWWSPELRSLLALQQGSIPGQRRWLKQLHPRSRGVLRAAWRRLWRDGRAANIELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQVQNITEQHQTDALIRWRTELLNRVSALGRIGGCEIEVATRNMQWTEECYRIHGLRKEPITLDQALALYAEDSRAAFEAALGRIAGGGLPEQLDLCFYRQSGLRVWVQVLIELDRRDGLPPRFVVLFRDITREREANERIELLAHYDLLTGLPNRVLLGEQTSEAIEEARDRGTSLAMLFIDLDGFKNINDSFGHATGDALLKAAATRLHQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLINSLAEPLRRGDTTLKVGASVGIAMLGESQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRRLEIEHGLHGAIERDEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLSEACRQAAAWDRAGLHFERIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESALIRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGTAEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQQHAAPGRTDAASEVVLVR
>NZ_CP049368.1|WP_165377089.1|2159647_2161750_-|PAS-domain-S-box-protein
MPVEPTGTAPVPDPRMAQALGRDRRRVVLSYLAMALAWMIATDGAVTALVPDPQQAALWQSMKGAFFALASAGLLYLLLRPLAEHVLHTHARLQASELRLRQMFEGNPGPILVYDLDTLAILDANPAACSTFGWDRDALLTQTIDVLWPPGQDQALQTKLEEIREAPEQLCILRAQLQLRDGSLRQMELRSNAIDYDGHTARLLIAIDRTAEDLAQLRRDQALARVEEAHELARIGAWELDPSTGQGRYSNQVYRLLGRRPPEARRWHRFDELLVAADPATAAQTDQVLAGLCSGEQVQVDVLLPVLAMDGRALMVHLRAASGVDEAGRDRILGTLQDVTEREQSRRLLREREEQFRELVRVLPDGVVILSDEHVLYANAWAAGLFGYGSHTLLGEPLSALVAGSDLARLRAQMRAGQPQHSPGHSSVLAMQRADGRSFQAGLAVGDVRYGGRDCKLLIVRDLSESEQTRSALETSNRELQAMAGRLFSLQEDERRAISRDLHDDIGQAITAIKLSAYAAQDEDDAQRRGEDLAQIVSLADTTVAKLRDISTLLRPPQLDALGLEAALSWQARVLFRSSSVELQAEIESLPTRPDNSIEQACFRIAQESLTNVLRHARASQVVLQLRDVDQRGLHLMIRDDGEGFDPDGPRGLGLIVMRERAQSVGGHVRIESAHGAGTLVDVHLPYQAAVTAAVESAEY
>NZ_CP049368.1|WP_089241062.1|2157867_2159643_-|EAL-domain-containing-protein
MWNPNLPPVSIDDAPDRLGAGNPELQAMVAEAASGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRHGSDEFLIAVPRTADLPLAEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASSASRLLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSARDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARLWRDQGFDDFTIAVNVSTLQLLRPNFFAEVMGVIQASGVPAQMLTLEINESALTNNVNFVHETLANLRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQLGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRYLRPEAFAETRPDRTLLLLDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLAINDVQVILSDQRMSDMSGTEFLGRVKMLYPDTIRLVLSGYTDLNTVTDAINRGAIYRFLTKPWNDDELRKHIHQAFRTYEEQRRSNGGPVAAEPADGGEDRSPLR
>NZ_CP049368.1|WP_165377088.1|2156553_2157771_+|PAS-domain-containing-protein
MSAANVLVTAPLPPQPVLQALLERLREGLLLFTEDGQVALANPAAQSLLGRNEGALPPPQRLRELLPPDALEHARQHGHWSGSLPLGEGVVIAHLYFHGEPGSGHYLALFRHIEGQEDYERELQQRHAELRQAYLRLNGTQEKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTVIEAYERALRAPDPKALIPEIDDIRDRLDIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSGRDESWKLVDLHSGLESTINIIWNELKYKVHLVREFGQLPLVECLPSELNQVYMNLLLNAGHAIAERGTITVRTGVDGDTVWVEFEDTGGGISPELRQRIFDPFFTTKPVGSGTGLGLSISYSIINKHHGRIDLDSTPGVGSRFRLVLPIKQPR
>NZ_CP049368.1|WP_025879114.1|2156123_2156462_+|flagella-protein
MTAAMSEPLQRLAQALDVERQALVEHDVHALIRATGAKLEALRALEGAPPVGEGEQLQELAERNRANGVLLSRRRREVNWALRQMGRTEESSAYDAKGQSHTVTARRPLAVA
>NZ_CP049368.1|WP_025879113.1|2155821_2156127_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSQKIDGNLQVPQALRSVTTPAAKPGVSTDSAARPVEAADSLRLTGEATNLQAIERELSTAPAIDAQRVAAVRESLQNGTYKINPDAIASRMLELDQQLQG
>NZ_CP049368.1|WP_165377087.1|2155089_2155746_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MRRIASFLAIALAVAAPWATAADWQPVASIRAAALSTLAAGTEGEAVVADALRLPKCNGALQVQPTANTTVEVSCPDAGGWRLFVPVKVRRNQTVLVLTRGIGTGESIAAADISTAQRDAARIAGAVLADPAAAIGRIARRPLPAGTLLSSNDLVAQRLIKRGDSVALVSRRGSVEVRIAGRALGDAGQNERVSVENLSSRRIVQGTVDATGDVIVAR
>NZ_CP049368.1|WP_089241055.1|2154010_2154955_-|chemotaxis-protein-CheV
MSHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPGQFAGVADVRGRSVPVLDLGLAIGHPEREPDADTAPGYLVVTEFNRSIQGFLVSGVERIVNIAVEDIHPPPELGAESSYLTAVTRFQGELIQVIDVESVLADIAQVRGEAVLDPAMAMPADAPQLQVLVVDDSRVARQQIRSVLDQLGVGATLLSDGKQALDHLLQIHASGENPADRYAMVISDIEMPAMDGYTLTTEIRRHAGLSGLYVLLHTSLSGVFNNAMVERVGANAFVAKYSPHELADFVLDRLRKVAMAA
>NZ_CP049368.1|WP_089241053.1|2153461_2153857_-|flagellar-basal-body-rod-protein-FlgB
MRNLITDYLGVHAQAMPLREQRMKLIASNLGNADTPGYKAQDLDFDSALRHAQGLDANGLMTTTNEQHYEISSGLNPFQVAREGVQPSIDGNTVDPDAERAAYGRAALEYRASLSFVESKVRSMLTAITGQ
>NZ_CP049368.1|WP_025879109.1|2153050_2153458_-|flagellar-basal-body-rod-protein-FlgC
MSNLPIFDIAGSALQAQSVRMSTIASNLSNADSIAGSADAVYKPLEPIFQAVTSKTDPNITSVQVKEITQSNAAPIKRYEPGHPLADGDGYIYQPDVDPVAQMVNLISTSRNYQAGVEMLTTAKELALATLTMGR
>NZ_CP049368.1|WP_165377091.1|2164840_2165365_-|hypothetical-protein
MAIALIALLLVEVLLLVMWAPFFFRTGIVLFNQRVAATPAELAQLSLAGLEHDLPTDTWLRLVFHALPDGSIAFRESFAPSFGGRYFPLMRGRVMIDARRREVRVVGLCSWFALGLTLMMVPIILVRPSASPMLVALLLFYMGFYIQRRRYAGVVEAVRARLRSEFPQRLVAAR
>NZ_CP049368.1|WP_165377092.1|2166142_2166358_-|hypothetical-protein
MTLIRALPPINENERPRNAGVREQLRQLENVAREEIQELQQLADARPAPVVAGDDQLGLAWDLGLDGDALK
>NZ_CP049368.1|WP_165377093.1|2166456_2167647_-|chemotaxis-protein
MYSRIFIRLAAPLALTLLLPFAIGFEWPVALRWAILTTMTLSWLGFAWWTARAQAHRSPEHARVLREQDQLLTELRNFVGNEIDGSRGEVERARDLIRQAVSSLGGSFDAMNRKSRQQSQALSRIVDRAGDEGSAGLDVARFAQHASHRMEQLVEALEQVSGQSSTTVQHIDQMAQHLDGIFALLEDVKSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLSERSTTFNEQIRKLAHSSKDAIAKVRETVSHMASRDMDRSREARQEAAAMLDNVAQINASLGDGMREVSDCARSIDGSVAEAVRALQFEDIATQALGGVHTHLDRLTAINREAVALQELLHRNGGVFDEEIASALQRTGSRLRELRSEWERPPHKPVAQQSMGAGTVELF
>NZ_CP049368.1|WP_089241076.1|2167816_2168431_-|high-frequency-lysogenization-protein-HflD
MSFTVDDRVLALAGIAQALQQVRRIADTGHSDAAAVRTAVDSVFRIDASSPQAVFGDRHALKSGLRLLHNHFRNQGQDPILPKLALSVLQLERRFVQDGATVNKVASGIERAQQQAAELGDSGHPDVLAALGGLYADTISHLKPRVMVQGNPHYLGQAGVVAEIRALLLAAVRAAVLWRQLGGSYWDFLLSRKAMVEAVDRQLA
>NZ_CP049368.1|WP_089241078.1|2168427_2169570_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSSPRVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCRAEDDRRDAVAVCGLLGIPFHFRDFSNEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERIATGHYARIAQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKSDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKTGQILDPSDGSVIAEHPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSPWMLSNRLRSETAHWIAGAPPARRFECTAQTRYRQPDEPCTVDVLDDGSVQVSFARPQRAVTPGQSLVLYDGEVCLGGAVIAATDAPLEQRLRTTPSPFEVLAA
>NZ_CP049368.1|WP_165377094.1|2169566_2170028_-|NUDIX-hydrolase
MNTSPDPRWAPHATVATVVVDGGRVLLVEETIEGRKVLNQPAGHLEPGESLPAAALRETVEETGWTVELTAFIGCYQWTAADGTPFLRFCYAARPVSHDPARPLDAGIDRALWMTPAELQAAAGRQRSPLVWQVLADYLAGQRYPLALVREVA
>NZ_CP049368.1|WP_165377095.1|2170029_2170518_-|hypothetical-protein
MKRTLLSTLLIALAAAGTAGAATTTDSAKADKAVARHLEKLGYTYEVDEDGDYQMVFDVEGDRTQIVYVRSSVEDFGTHNIREVWSPGYTSPTKQFPVAVANRLLEDSQDAKMGGWVKQESTAMFVVKIDADATSDQLSDAIDAAIRTADAMELELTKKDDL
>NZ_CP049368.1|WP_025879127.1|2170631_2170958_+|ATP-dependent-Clp-protease-adapter-ClpS
MPRESAPDSHHEHGVAVEPARPEVAPPPFYQVMLLNDDYSPMDFVVDVLQQFFNMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYARMNQHPLLCTMEKA
>NZ_CP049368.1|WP_165377096.1|2171004_2171817_-|APH(6)-family-putative-aminoglycoside-O-phosphotransferase
MSEPYLSRWRLRRDGPSIRTPHARLWPVLTASGEAAMLKVSTETEEQNGHRLLRWWNGDGAARLLAHEGPAILIERAHGDSLRQRSIKGEDDACTMILCQVLQQLHRPRSAPPEDLVCLRRWFADLLQARAALPPLLEQCRSLAMALLEDEQEIRPLHGDLHHDNVLDFGARGWLAIDPKRLLGDRAFDYTTMFSNPDLRGPGIHVATRPERLHARLEQVCRLADIERTRLLRWIAASAGLSAVWFRDDGNPADIDEAVAGMALQALAEA
>NZ_CP049368.1|WP_049467362.1|2171955_2174238_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADADRLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGEEGEQPSSSEGEGRMEGGEGEPKGDALTEFASNLNEQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIVEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKGVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYEAHHGVTYADEALQAAVDLSVKHIADRLLPDKAIDVIDEAGARQRLLPEGQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIGTLASAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRAFTPEFRNRLDAVVQFQPLGFEHILRVVDKFLIELEMLLQEKHVSLSATPTARDWLAHHGFDPLMGARPMARVLQDKVKRPLADELLFGKLVNGGKVSIDVRNDELVVEAQAEPERLLPATVE

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Crispr_ID: NZ_CP049368_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049368_4

2188448-2188555

Orphan

Consensus_repeat	Method
GGTGGGTGTCAACCTTGGTTGACACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049368_4

>merge|NZ_CP049368|4|2188448-2188555|CRISPRCasFinder
GGTGGGTGTCAACCTTGGTTGACACGATGCTGCTCTGCCGGCCAGCGGCCGGCACACTACCGCTGCCCTGACCCATGGCTCCGGTAGGTGTCAACCTTGGTTGACACG

>NZ_CP049368|4|4|2188448-2188555|CRISPRCasFinder
GGTGGGTGTCAACCTTGGTTGACACG	ATGCTGCTCTGCCGGCCAGCGGCCGGCACACTACCGCTGCCCTGACCCATGGCTCC
GGTAGGTGTCAACCTTGGTTGACACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049368.1\|WP_165377099.1\|2177354_2178482_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|377314
NZ_CP049368.1\|WP_165377108.1\|2196189_2197233_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP049368.1\|WP_165378583.1\|2175214_2175955_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP049368.1\|WP_165377098.1\|2176026_2177295_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_089241102.1\|2191922_2192297_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_005409596.1\|2174909_2175128_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP049368.1\|WP_089241100.1\|2191436_2191838_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP049368.1\|WP_165377106.1\|2193716_2195096_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|274824
NZ_CP049368.1\|WP_165377103.1\|2188567_2189731_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319826
NZ_CP049368.1\|WP_089241098.1\|2187771_2188410_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|178807
NZ_CP049368.1\|WP_165377102.1\|2185720_2187661_+\|DUF3857-domain-containing-protein	unknown	unknown	gnl\|CDD\|379003
NZ_CP049368.1\|WP_025877237.1\|2182117_2183089_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP049368.1\|WP_165377107.1\|2195146_2196193_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226928
NZ_CP049368.1\|WP_165377101.1\|2180510_2182049_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|214762
NZ_CP049368.1\|WP_165377104.1\|2189987_2191349_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP049368.1\|WP_165377110.1\|2198060_2198810_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165377100.1\|2178569_2180153_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_CP049368.1\|WP_165377105.1\|2192566_2193595_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP049368.1\|WP_100552503.1\|2183321_2185685_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP049368.1\|WP_165377109.1\|2197229_2197991_+\|heme-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237422

Protein	Function_ID	Function_description	E-value
NZ_CP049368.1\|WP_165377099.1\|2177354_2178482_-\|N-acetyltransferase	gnl\|CDD\|377314	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition. FemAB_like is a family of both baterial and Viridiplantae proteins with responsibility for building interpeptide bridges in peptidoglycan. Such a function is feasible for bacteria but less likely for the plant members of this family. Perhaps the plant-members are using homologous proteins to recognize bacterial peptidoglcans as part of their innate immune system.	0
NZ_CP049368.1\|WP_165377108.1\|2196189_2197233_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.01654e-86
NZ_CP049368.1\|WP_165377109.1\|2197229_2197991_+\|heme-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	4.90828e-111
NZ_CP049368.1\|WP_165378583.1\|2175214_2175955_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.8456e-127
NZ_CP049368.1\|WP_005409596.1\|2174909_2175128_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	7.64978e-48
NZ_CP049368.1\|WP_089241100.1\|2191436_2191838_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.78809e-27
NZ_CP049368.1\|WP_165377106.1\|2193716_2195096_+\|ATP-binding-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	1.2431e-13
NZ_CP049368.1\|WP_165377103.1\|2188567_2189731_-\|hypothetical-protein	gnl\|CDD\|319826	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily. Bacillus subtilis recycles two toxic byproducts of polyamine metabolism, methylthioadenosine and methylthioribose, into methionine by a salvage pathway. The sixth reaction in this pathway is catalyzed by B. subtilis MtnX: the dephosphorylation of 2- hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HKMTP- 1-P) into 1,2-dihydroxy-3-keto-5-methylthiopentene. The hydrolysis of HK-MTP-1-P is a two-step mechanism involving the formation of a transiently phosphorylated aspartyl intermediate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	0.00109576
NZ_CP049368.1\|WP_089241098.1\|2187771_2188410_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|178807	PRK00031, lolA, outer membrane lipoprotein chaperone LolA.	8.51784e-72
NZ_CP049368.1\|WP_165377102.1\|2185720_2187661_+\|DUF3857-domain-containing-protein	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	3.41314e-27
NZ_CP049368.1\|WP_025877237.1\|2182117_2183089_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	4.65621e-153
NZ_CP049368.1\|WP_165377107.1\|2195146_2196193_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226928	COG4558, ChuT, ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism].	4.21894e-33
NZ_CP049368.1\|WP_165377101.1\|2180510_2182049_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|214762	smart00646, Ami_3, Ami_3 domain.	9.04254e-11
NZ_CP049368.1\|WP_165377104.1\|2189987_2191349_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP049368.1\|WP_165377100.1\|2178569_2180153_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	6.10041e-18
NZ_CP049368.1\|WP_165377105.1\|2192566_2193595_+\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	3.00865e-55
NZ_CP049368.1\|WP_100552503.1\|2183321_2185685_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0

>NZ_CP049368.1|WP_089241098.1|2187771_2188410_+|outer-membrane-lipoprotein-chaperone-LolA
MNLRLRRFLATTTLAVACAAAGSAWAGARDDLKTFTTGLKGLDGQFSQQVFDSRGKVKESTSGRVALSAPRLFRWEYVRPHEQLIVADGKKVWMFEPDLEQATVREQGKEEQNSPLTALINPALLEQQYDVSEEAATRDGLQWLSLSPKRDTEASFQYAALGFNAQGLAKMEITDAVGQRTVISFSGWKRNPSFAANTFRFTPPAGTDVIGN
>NZ_CP049368.1|WP_165377102.1|2185720_2187661_+|DUF3857-domain-containing-protein
MLQPVSCALALACLLAAGPALADAAATAVPAVAPPSTGSDAEASNNFSFVRYRADYQVRADAGNVQTETYEILLKTKAAVEQFSQVRLSYSEKMETLDVVNAYTLTADGQRREVPADRIYTQESYSSASAAMYADRKVRVIVFPNLAPGTRLFYQVRRTQLTPYFPGYFGLWETFNVFTQYDDAEVTLSAPANLPMLVDSRGVQGSDRPVVKNGLATWRWRYQRREPMQAQNWSAAVWEFGPNIMASTYRDWAQMGRAYQLKAGPAAQVTPEIQALADEVTDGVSDRRAQADALYRWVAQNIRYVAVYLGNGGLEPNSAQSILDNHYGDCKDHVTILEALLAAKGITSSPVLIGAGGGPTLPKIPLLGRFNHAITYVPEFDLYLDSTSAWARFGQLPDGDLGAPVLHTRDATLARTPANDPQRNATVMDVRFTFDAQGNLRGETVPQLSDNAEIGMRAQFAQLNAQNRARAEESIMAASGFDGRGQLQLQGVPVDLTRPFGYRMAFQAEDYVDFDVAGGMAVPDPPGGESVRGLYASASAPDNETPFYCNASLREETYRLQFPANAPIIAIPGSQRFANAAGEYRVDWSRQGQEVTVHHRLQQNAVRGAEALCQPQDYAAFRALFREVRRGFRGQVLYGKLPGAGG
>NZ_CP049368.1|WP_100552503.1|2183321_2185685_+|DNA-translocase-FtsK
MAKQVPERSKSDDKKASRRTAAAATTDNPRRQRLWRDLGLIAIAPALLYLAASLFTYSATDPGWSHTGSVVAPVHNMGGRAGAWIADVLLQLFGYIAFLLPVVLGALAWIAMFGLKRESKGENDLDPALRLVGLVGFLIAGTGFLHVRLFSGDVSHAGGILGKLVGNSLSVGFGALGANLFVLVLLLASITLATGLSWFVVMEKIGRGVMSLAPLLERKKEQATEWQQTRVMREERQEVRKADAEVRAKREPVKIEPRPEPVIEKSDRAKRDNQIPMFRGVNGDGSDLPPLALLDDPKPQPVGYDKETLDALSRQIEFKLKDFRIDAQVVGANPGPVITRFEIEPAPGIKVSQISSLDKDIARGLSVKSVRVVDVIPGKSVIGLEIPNVTREMIYLSELLRSKEYDKSASALTLALGKDIAGRSTVADLARMPHLLVAGTTGSGKSVAVNAMVLSLLFKASPKDLRMLMIDPKMLELSVYQGIPHLLAPVVTDMKEAANGLRWCVAEMERRYKLMSAVGVRNLAGFNKKVKDAQDAGQPMMDPLFKPNPELGEAPRPLETLPFIVIFIDEFADMMMIVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQSGAETLLGHGDMLYLPPGTAMPERVHGAFVSDEEVHRVVEHLKAMGPADYVDGVLDEVQTMGDGVVVGATGLPETSSGGGDESDPLYDEALRVVTETRRASISGVQRRLKIGYNRAARLIEAMEAAGVVSSPEHNGDRTVLAPPPPK
>NZ_CP049368.1|WP_025877237.1|2182117_2183089_-|thioredoxin-disulfide-reductase
MSTSLPSRHQRLVILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPGDAHGLMGPDLMARMQAHAERFETEVIFDHIHTADLSQRPFKLIGDSHEYTCDALIISTGATAKYLGIPTEDEFKGRGVSACATCDGFFYRDQDVVVVGGGNTAVEEALYLSNIARKVYLVHRRDTLKAEKIMQDKLFAKVEAGKIETVWHHQVEEVLGNEAGVTGVRVKSTLDGSTRDIDAHGFFVAIGHHPNTQLFDGQLTMNNGYLEIRSGLGGNATQTSVEGVFAAGDVADQHYRQAITSAGFGCMAALDAERYLDAQGKAS
>NZ_CP049368.1|WP_165377101.1|2180510_2182049_+|N-acetylmuramoyl-L-alanine-amidase
MNFVRAFRRIGLASIIACTLPCPQALTQPLPSAAETDVGLDLLLTRQAQKILDDHQLRKSRSTGISVGASVDIQQRKLVISFGAGILPSEDDHSLEELEQYIRNTLEAYTMQAGVGEVETVILYEGKPYWEHFPRGISAQQQGSARQAGGQVLVSASHGLLRVHPGMEWEFQRPVRNGVEEDLITPGYADELQRLLEDRGGVTVHRARRGGGGAHTDSMRPWYEMSARYHLKDLLPDRTDIWNHFANSTASNREVSDDIRARPYYANHLGVAGMLSIHTNADVPGVARGSRVFYHSSKPADRQLADLTLCYMRELITAQEGYADFPVPRSGVAAGHGENNFATMPSMVVEVAFHTNATDAAALQDPVFRTASMKGVEKGYRLFREGNGCVPLKAEPIQGIQLPQGSSQQVDVAFEGYPQYPIELVTTNVGCPPGWTCSDGKVHITTPDDKPSQITLRCENAGSAPILWDTRVVDADGVKSPPVRHVVQCIRTSRGLNVAPISPAGVEPATAG
>NZ_CP049368.1|WP_165377100.1|2178569_2180153_+|N-acetylmuramoyl-L-alanine-amidase
MSIGVRLVRNRWRTAGQGGGALHERRASRHMEKSIMKGLKLATAVVACGLFFVSPVLASGVEASRAAEDPGTYAELLALLEREIGTQLTRHLQEEGRLRQVTVSVAVDPQKRRMVVDFGPGYLPGDEQNYGELFLIPLAAGLRHYSDQAGLEILDVEFLFQGKPIEAHFPEDHPLPSAAKSRSAHTRALVSSSHGYIALHPSRAWEFQRPAPLGLQEDILSPTYGDELQDLLEQRSGLVVHRARSRSKDQHPESGYPWEQMSSRYHLKALFPERADIWNELPNSPSSDREVKEDIRARPNYANHLGVDVMLSLHTNGNPSPGVRGAEVYHHRTKPEDKALGDSILCGMREVIHAQPGYESFPIRAESVAEGHGENRIGTMPSVIVETAYHSNPEDVAALQDPVFRSAAMKGVEKGYRLWATGKSCGQFALQPISDIEVPLQTSRDVNVSFLGNPQYPLGIEVAVADCRPPGVCTPWKGRFEDPDAPVKFGVSCSSTRPGTVRWKVLMRDADGVAAAPVEFTQSCVRA
>NZ_CP049368.1|WP_165377099.1|2177354_2178482_-|N-acetyltransferase
MPTARFLDSLQSVPATDWDALHDGRNPFVSHAFLSGLETYGCLHEDWGWQPQHLTLWDGDDALVGAIPGYLKSNSHGEFVFDHAWANAYARHGRDYYPKWLGAVPYSPVTGPRLLALGDSQRTALLTALREQMPALDVSSAHINFHTAADETAFGDDWLLREDIQFQWQNPGDWSTFEQFLGAMNHKHRKNIRQERAKVTRQGITFRVVHGDEASRADLQAMYRFYLQTFLEYGNAPALTEAFLRHLAISLGRGLVLFLAEQDGEPIAGALCLRGGDTLYGRYWGGATLPGLHFEACYYQGIEYCLREGVARFEPGAQGEHKLARGFLPTIVRSRHWVADAEFAEALRDWCRQERRDVRRYQQELQGHSPFRAEP
>NZ_CP049368.1|WP_165377098.1|2176026_2177295_+|hypothetical-protein
MSDPITAILDAHDAPRTRNDSLGMLLTLASEDRPQLGALLLQALERRSPSSTFLDTALDLLSDEAVTPVCTDAWRRYRDGERGELLTSVLEFASYQAPHTLQGDWEALLGVAIEDDIQLAPQVWQALPPPLAAQWAHRLTEADDDRELERAKAVLLATQPETYAAARGYLADWSDLDAQVWAHWAGLADGPRLRRLHGQQPLHLRFGSKQHRAQVAEEPGWRKRIWRLHPTWNGGQVQHAGHMGGPLDAVCGSCHAPLQRLLQTDVAALEEGAAGSITLGLCLDCCGWEDPPVRFYRHDAEGVPSCHPSQHREVPINPTDSGDLMQAEVGLAAMDTHRWQQQDWGQSNHRQNLSRVGGAPSWVQSAHYPACIDCGEQMPFVMQLDSTLPTTNEGMLLWGSGGMLYSFWCAKCRVSGHFWQCT
>NZ_CP049368.1|WP_165378583.1|2175214_2175955_-|leucyl/phenylalanyl-tRNA--protein-transferase
MTRQLPWRLADAPGAPFPPAETALRQPDGLLAVGGDLHPLRLLNAYAGGIFPWFSEGEPILWWSPDPRMVFRTDGVHLGSRFRRQLRGSNWEVTADTAFSQVMRACASAPRPGQDGTWISPAMVDAYSQLHDLGFAHSVEVWDRQTLVGGIYGVAIGAMFFGESMFSGASGGSKVALAALAQTLHGWGWPLIDAQVENPHLLRMGAEHLPRAPFLQQVRSAVQAPGREGAWTRLVGRVPAADFAGE
>NZ_CP049368.1|WP_005409596.1|2174909_2175128_-|translation-initiation-factor-IF-1
MSKDDSIEFEGTVSETLPNTTFRVRLENGHEIIAHISGRMRKNYIRILTGDRVKVEMTPYDLTKGRITYRMK
>NZ_CP049368.1|WP_165377103.1|2188567_2189731_-|hypothetical-protein
MRDPESNVLEFVAGCAVDADIYYLAAASGPGHEYYDPDPGPPTRMFLYQRQTEEKWFYHDLPDFQVMSAQLVPEKNSRPRRVLALDFHGQLEYYSRAGATIEYISPEGPGFSGGLTALRRVGEEIFCCGVGGMIFHRTPSGWRQLPTNFPARERMEPGGDDVLDDFESWLDCVGHLFEAVDANPLPENPAEREAVLRRLFEDTRSQLRDQGVRFITEQVEALSAEMLNDLCGSGYDDLYAVGLHGLIAHWNGSTWQLTEPLTTSHLVHAMVTDAGGIFLVGHQSTIVMGDITTGFACVPHEISEEVDFYCACQHGSLIYIGSESGLYTYCLETGGVERLSTGLPEELRDATTVDISSVDGALWVLTSWDLARFDGDSWQVMFHPDNG
>NZ_CP049368.1|WP_165377104.1|2189987_2191349_+|replication-associated-recombination-protein-A
MPRHRSTSFPGPDLLSVDREHMRPLAERMRPRTLDEMVGQKRLLAPESALRRAVESGHVHSMILWGPPGCGKTTLALLLAEYSDAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPTDIVEALERALGDRERGLGEERIEVAPELLLEIATAADGDVRRALTLLEIAAELAGGEGGRITPQTLTQVLADRTRRFDKGGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPSYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKADVRDSGTEEVPLHLRNAPTKLMKELGYGAEYQYDHDAEGGIALDQTGFPDAMGERVYYNPVPRGLEIKLKEKLDRLRAAREAARAAKGA
>NZ_CP049368.1|WP_089241100.1|2191436_2191838_+|DUF805-domain-containing-protein
MQEMILPLKRYAQFEGRANRREYWMFQLFLLLAATGVGVLSLTVALVAGLVLEADSSWMAGITIGALALVGLLWLATIVPLIAVTVRRLHDCNQSGWLYLLALVPMGGLVILVFALLPGTPQDNLYGPVPAGP
>NZ_CP049368.1|WP_089241102.1|2191922_2192297_-|hypothetical-protein
MKHKALIALAAGLLAPLAGHAAPSLAGLYSAYEEAGYSSLGLEELNQTVQFTAVSLGASSNLQGEPVLEAGDEDGQVLARLTASDDEQNAKLAAMEEGVSFTASCTLQFSSGSDYLALGDCVLQ
>NZ_CP049368.1|WP_165377105.1|2192566_2193595_+|alpha/beta-hydrolase
MKSSVLPPRRGPLLSGLAALMMGLLLATPYAYAQQRNPLQKMGKTVLDAPAASYRFERFVIDSPDQQRRWRVNVAIPAKASKAPSPVLYALDGNAVAMVLDQPLLAELATRKAPPVLVLIGYDNDLRIDSASRTRDYTAWIDRADDESGKTQAVGGGAAAFLDMVERRIKPEVERRANIDRQQQALWGHSLGGLFVLSSLYTRPAAFQYYLSASPSLWWSQGAPLGDVEQQFVQNAHGQPAKVWLMLGGAERVGDRGKRDMSNPRVVAHLRRIGGATPDAAMQLSERLGKVPGLSVQYREFPGLGHGPMLPASFHAALNELYGVTDRSAGDDQPTGGDNAAE
>NZ_CP049368.1|WP_165377106.1|2193716_2195096_+|ATP-binding-protein
MSFRPSFRLTSLAAGLLLAVTATAQPVFDQPASATFKGQVVSRGDNVVPGSTADVTGRGFVPGQQVSLLRGDTVLNSQPVVVDADGNFKTQLAIPADAVPGTHPVVVRASQPAAATVLKLRVSPQLPLSGQAQFATQSNKLVPGLYQSAYSAASNAVFVTSAVGRPPVTQSQLLKLDPKSLKVTKAITPAQVPGSANGAVFAVYGVGVDDANGNVWVSNTRQDTVAVYRQADLSLVHQFPVGTVPHARDVVVDSTHGKVFASATGEDHLSVFDAKTLKALEPITLASGVDDEKFVPMSLVLDEPSGKLFTVSIGTPEAAVIDVSSGKVDKVIDLGNSISASGVAFDAQRNRLYVASQGTDNLLIVDVASGKVVHDVPVGAGALNVAFDAKSGLAYVTNRGAGTVTVVDRDGKVVGNLDGGTFPNHVRADGKGNVFAVNKSRGAEDPKGDRITRISLRQP
>NZ_CP049368.1|WP_165377107.1|2195146_2196193_+|ABC-transporter-substrate-binding-protein
MNITSRLRLCALPLAVSLVLAACGDQAAPSSGNPDAAAPAAATTEAGALPAGWQRVAGNDVPTLPGQQAVLPSKVQSDDGAGVEVDDTSRIIAGGDDIIAVIEALGLGKQVFAAPTNTTTQAGLAAPHQFLFNRTTGVEGVLSLQGSLFIGNSLRRHTELAKKLREVGEPAVVIDDLQPAPDKVRKIAAVLGVADAGQTLATQVQRQLDEAAVIGKGLEHAPRVIHVSATGAGGAPTVAGADSASAKLIALVGGINIGTEAGVANYSRLSNEGVVAAAPEVILVTEHDLQLFGGAEGLWKAYPTLKQTPAGQANRVWVMPDAQLKYASIGSGAGALALAQALAALPKA
>NZ_CP049368.1|WP_165377108.1|2196189_2197233_+|iron-ABC-transporter-permease
MSPADRRRRRGRTMLLIALVALLGAVLASFAVGPLRLPPLEVMQALAVKLGLLDPQSVSSRDLAVVWQLRIPRALLGAMVGAALAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGWLVPVAAFGGGAAAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYVANESELQSLVFWQMGSLARANWADVVAVLPLFAIGAFALQRLATPLDMLALGERQAQHLGLDVARTRRLLVAFSALLVGSAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPLSGLLGALLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRRKAAA
>NZ_CP049368.1|WP_165377109.1|2197229_2197991_+|heme-ABC-transporter-ATP-binding-protein
MSAFLQLRDVVVRRQQREILHGITLGFQPGTVTALVGPNGAGKSTLLGVAAGDLRADGGDVYLHGRPLRDYKAGPLARERAVMPQEHGVRFAFSVEEVVAMGRLPHSPDPQVDDAQVERAIDAAELQALRLREVQQLSGGESARTTFARVLAQDTPLLLLDEPTAALDLRHQERTLRSVRACAEAGACVIVVLHDLNLAAGYSDRIVLLEQGRVAADGTPSDVLTEANLQRVYQQDVVVLQHPRRGVPLVVVI
>NZ_CP049368.1|WP_165377110.1|2198060_2198810_+|hypothetical-protein
MNLFRHRCALLVVLIGVVGAASAAATTKVSLMTASEQASLIETRHSTGEGAAVSSFTTEYFGNGEIGMAWEDKRVLLLCKKAAYLNLPGMKPDASKLSVEQRQMVAYEAMMAGFGGIAALGAVTGESIEVADDGTETRRPGESKWAYGVERYEVATQRMPEGVLRVRVRKQATVNNAKPSAPGDTFSTDEDQAARLAELAPTGSWTEVLIHGGQRKPRTDPAMSLKGWVSTVEQHAATVGDARRLHECK

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Crispr_ID: NZ_CP049368_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049368_5

3236409-3236492

Orphan

Consensus_repeat	Method
GTTCATCCACGCATGGCGTGGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049368_5

>merge|NZ_CP049368|5|3236409-3236492|CRISPRCasFinder
GTTCATCCACGCATGGCGTGGATCTACCCTCAATCGACAGAGATTCATCCACCGACAGATGTTCATCCACGCATGGCATGGATC

>NZ_CP049368|5|5|3236409-3236492|CRISPRCasFinder
GTTCATCCACGCATGGCGTGGATC	TACCCTCAATCGACAGAGATTCATCCACCGACAGAT
GTTCATCCACGCATGGCATGGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049368.1\|WP_108266381.1\|3247326_3247929_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226789
NZ_CP049368.1\|WP_165377777.1\|3227089_3228724_+\|CHASE2-domain-containing-protein	unknown	unknown	gnl\|CDD\|215016
NZ_CP049368.1\|WP_165377778.1\|3229319_3230039_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165377782.1\|3235985_3236390_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319940
NZ_CP049368.1\|WP_025879081.1\|3241826_3242174_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100007
NZ_CP049368.1\|WP_032975063.1\|3228813_3229266_+\|DUF4442-domain-containing-protein	unknown	unknown	gnl\|CDD\|373120
NZ_CP049368.1\|WP_165377786.1\|3247097_3247370_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370696
NZ_CP049368.1\|WP_089236389.1\|3240161_3240575_+\|Rnf-electron-transport-complex-subunit-RnfB	unknown	unknown	gnl\|CDD\|181550
NZ_CP049368.1\|WP_089236383.1\|3231402_3232086_+\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
NZ_CP049368.1\|WP_165377780.1\|3232964_3234902_+\|DUF885-family-protein	unknown	unknown	gnl\|CDD\|227142
NZ_CP049368.1\|WP_165377776.1\|3225392_3227093_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226705
NZ_CP049368.1\|WP_165377781.1\|3234918_3235989_+\|beta-lactamase-family-protein	unknown	unknown	gnl\|CDD\|365903
NZ_CP049368.1\|WP_100553177.1\|3236839_3237289_+\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP049368.1\|WP_165377785.1\|3246483_3247101_-\|DUF998-domain-containing-protein	unknown	unknown	gnl\|CDD\|377627
NZ_CP049368.1\|WP_165378631.1\|3239546_3240137_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP049368.1\|WP_165377779.1\|3230046_3231327_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165377783.1\|3237391_3239470_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP049368.1\|WP_165377784.1\|3242367_3244932_+\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	unknown	unknown	gnl\|CDD\|225451
NZ_CP049368.1\|WP_165378632.1\|3245058_3246363_-\|virulence-factor-family-protein	unknown	unknown	gnl\|CDD\|226455
NZ_CP049368.1\|WP_025879090.1\|3232082_3232868_+\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|376842

Protein	Function_ID	Function_description	E-value
NZ_CP049368.1\|WP_108266381.1\|3247326_3247929_-\|hypothetical-protein	gnl\|CDD\|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	3.39834e-34
NZ_CP049368.1\|WP_165377777.1\|3227089_3228724_+\|CHASE2-domain-containing-protein	gnl\|CDD\|215016	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time.	8.22559e-59
NZ_CP049368.1\|WP_165377782.1\|3235985_3236390_+\|VOC-family-protein	gnl\|CDD\|319940	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins. uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.07304e-72
NZ_CP049368.1\|WP_025879081.1\|3241826_3242174_-\|RidA-family-protein	gnl\|CDD\|100007	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	6.40051e-55
NZ_CP049368.1\|WP_032975063.1\|3228813_3229266_+\|DUF4442-domain-containing-protein	gnl\|CDD\|373120	pfam14539, DUF4442, Domain of unknown function (DUF4442). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 139 and 165 amino acids in length. There is a conserved PYF sequence motif. There is a single completely conserved residue N that may be functionally important.	1.07494e-21
NZ_CP049368.1\|WP_089236389.1\|3240161_3240575_+\|Rnf-electron-transport-complex-subunit-RnfB	gnl\|CDD\|181550	PRK08764, PRK08764, Rnf electron transport complex subunit RnfB.	1.94148e-78
NZ_CP049368.1\|WP_089236383.1\|3231402_3232086_+\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	5.42606e-61
NZ_CP049368.1\|WP_165377780.1\|3232964_3234902_+\|DUF885-family-protein	gnl\|CDD\|227142	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown].	1.41045e-172
NZ_CP049368.1\|WP_165377776.1\|3225392_3227093_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|226705	COG4254, COG4254, Uncharacterized protein conserved in bacteria [Function unknown].	1.59926e-33
NZ_CP049368.1\|WP_165377781.1\|3234918_3235989_+\|beta-lactamase-family-protein	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	5.15325e-68
NZ_CP049368.1\|WP_100553177.1\|3236839_3237289_+\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	7.36311e-34
NZ_CP049368.1\|WP_165377785.1\|3246483_3247101_-\|DUF998-domain-containing-protein	gnl\|CDD\|377627	pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins.	0.000502416
NZ_CP049368.1\|WP_025879090.1\|3232082_3232868_+\|queuosine-precursor-transporter	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	1.19312e-41
NZ_CP049368.1\|WP_165377786.1\|3247097_3247370_-\|hypothetical-protein	gnl\|CDD\|370696	pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal. Members of this family are found in the N terminal region of various oxidoreductase like proteins. Their exact function is, as yet, unknown.	4.88157e-09
NZ_CP049368.1\|WP_165377783.1\|3237391_3239470_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP049368.1\|WP_165377784.1\|3242367_3244932_+\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	gnl\|CDD\|225451	COG2898, COG2898, Uncharacterized conserved protein [Function unknown].	0
NZ_CP049368.1\|WP_165378632.1\|3245058_3246363_-\|virulence-factor-family-protein	gnl\|CDD\|226455	COG3946, VirJ, Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion].	1.37311e-113
NZ_CP049368.1\|WP_165378631.1\|3239546_3240137_+\|HAD-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.96424e-49

>NZ_CP049368.1|WP_165377782.1|3235985_3236390_+|VOC-family-protein
MTTETTGLLGIHHAALICSDYARSKDFYVRVLGLRILAENHRPTRDSWKLDLALPDGGQLELFSFPSPPARPSRPEAQGLRHLAFRVAALEPFIERLASHGVACEPIRVDEYTGRRFTFFADPDDLPLELYEIG
>NZ_CP049368.1|WP_165377781.1|3234918_3235989_+|beta-lactamase-family-protein
MRAAALLCIAVLAVLPSITLAAAPLAPPDAGIDGLMQAYDGQVPGAAVLVLHDGKPVFRRGYGLAVVEDGSAVTPASNFRLASVSKQFTAAAVLLLVEDGRLALDQPARRWLPELPPAAAAITLRQLLSHTSGLLDYEDLMAPADTRQVHDADVLALLAREDRLAFAPGTQYRYSNSGYALLALIVGRAAGTDFASFLQQRIFRPLGMAHTVAHQDGVDVVAQRVYGYSEVSGHWQRTDQSTTSAVLGDGGIYSSLDDLARWDAALYDDRLLSAASRKAMFSPATATTEADVPHYGFGWRLNGRMQWHSGESIGFRNVILRYPDKHLTVIVLSNRNAPEPYPLALKIAQRWLDTLQ
>NZ_CP049368.1|WP_165377780.1|3232964_3234902_+|DUF885-family-protein
MPYSPRVLAAAIAALFLFSAVPPAEAAKKKGSRPAAAQTRQAAKPKARAGTRATPPARGSSARRAAPRPVAPARAVPKQVQLERLYDEYWDASMRLNPLQATFQGEPRYNDQLPNILSAAWRQQSHDFTTEWLGKVEKIGSDGLQGQDLLSYEIFVRDARASLAAERYPSWMMPISQYYNVGSIMAILGAGAGAQPFNTAKDYDTWSRRSLGIPDLFDQAIANMRQGMKAGVVQPRDLMEKVLPQLDAVIKPTAEESIFWSPIRTMPESISAEDKARISAEYKRMIELRIMPAYRALRGFIATEYLPATRSSSGLGALPDGQAWYANLIVQTTASQQTAAQLHALGEQRVQELQAQITTVMRDGKLRSSQAKLLRSMRNDRQFQYSDANALLNRYRHVQQQVDARLPLVLDTLPKAPLQIHAVEPERAMTAAAASYQPSPPGQPGVLFVNTRDLPSRKRWNVPVQYLHEAIPGHHVQLGLQQELTKLPRFRRLGGDLAFVEGWGLYAETLGEDLGTYTDPYDRIGYLYSRLLRAARVVADTGVHAQGWSKQQAVTYLQKTVDMSSDDANAEVERIMAQPGQALSNVAGLTTIIALRDKAKARQGAAFDLRRFHAEVLKDGSMPLDVLDHKIERWLAQPAAATPAP
>NZ_CP049368.1|WP_025879090.1|3232082_3232868_+|queuosine-precursor-transporter
MSEASHARPLQDRAVLLFIVLAAFFCGNAVLAELIGVKIFALEDTLGIDPLNWNLFGQTGSLSFTAGTLLWPVVFIMTDTINEFFGKRGVRFISWLAVVLIAYGFLFAFAAISLAPASWWVTSMDAHGVPDYQAAFAAVFGQGMWTIAGSLVAFLFGQLIDVAVFHRIRQATGERHVWLRATGSTAVSQLVDSFVVIWIAFVLGPQHWPTSLFLAVSSVNYVYKMGFAIALIPLLYLMRRAITRYLGEHRAADLRAAAAAD
>NZ_CP049368.1|WP_089236383.1|3231402_3232086_+|DUF502-domain-containing-protein
MSLEAPALVPRPSLQRLFLTGLLTLLPIWLTWVVVKFVFVLLSGISSPLVVPLSEQIATNFPHYLGWVRAEWIQNTIALLATLLVILAVGVASRRVVGQRLLRWVGAIIKRIPLASIIYDSAKKLLDMLQTEPGSTQRVVLIDFPHRDMKSVGLVTRVIKEQGTDRELAAVYVPTTPNPTSGYLEIVPVELLTPTDWTVDQAMSFIISGGAVAPSSVPFTRAGDRSE
>NZ_CP049368.1|WP_165377779.1|3230046_3231327_-|hypothetical-protein
MLKMLRWLGWAMLGLVVMAVAAWLLSRFWPLSAAQREDRRLLEAVQPNEGRNGFALLWTLPFDGLDQAQREAALADDLQRWKASPSQASHASLLAAKHAPLTLDRAGRCAVGPVGCLAQVRADPQRFADAHAGHAGLHERLARMADYDRFDSPFQPFESELLPLPAYTPLLDGTSAQALAYLQGDVAGAVEAGCRSVQFGRRMMRTGSTLVDSMMGAAVVRTHAALLGDMLVEQSPDYVPPASCEAALQPLDADEQSLCQAMQGEFAMNKAAIEASTQTAGSRLLLDRDHTLARIAGNFGWACRPAAAKALAADVPLLVPPSPRWDVGCVANPLGCTLSAIAGPSYTQYAARSQDTAAMIRLLGAQRWLRQQPEAPAEALVRLPAQWRSDTRAPQLSADGRHLQVLRRGPAREGEGPYLSMPLRAD
>NZ_CP049368.1|WP_165377778.1|3229319_3230039_+|hypothetical-protein
MRLLFFAAALAVMPFAAEALDVPPVRYPILPAHAATAEAFVPAGWALEYRIEGDLDQDGRADLALVLRQQDPRNIIEHDGFGPSPYDSNPRILAIAFERPSGYVLAAQNHTLIPRPDSPVLSDALAGSTGVSIQRGALRVGLYSFSSAGSWSTSTTTFTFRWQEGTFALIGYDRDSMMRNSGQTEGLSVNFSTSKVKLTEGSMQDDKEQVRWQTLGNRKRWTLDSVGDGWAFNPLGDGD
>NZ_CP049368.1|WP_032975063.1|3228813_3229266_+|DUF4442-domain-containing-protein
MKASTFRFGINLWPPFLFTGIHVTRITPDYRQIDVELRLRPWNRNYVGTHFGGSLFAMTDPFWMLGLMHTLGRDYYVWDRAGAIDFLKPGRGTVRTSFRIDDALLDELRTAAAGGEKVLRWFSNDVVDEAGEVVAQVRKQVYVRLKPHAR
>NZ_CP049368.1|WP_165377777.1|3227089_3228724_+|CHASE2-domain-containing-protein
MRRSPLPWSRRILLALLAGAATAVVSHGQWLWRQDETAYDLMVGSWDYRPDPSVLIVAIDEGSLQRLGQWPWPRSVHARLLDRLTDAGAERVALDLMLSEPDRRDARQDAELAAAIRRNGRVVLPVLAAPAAGDRMAEEMLPIPLIAASAAAMGHSDVEVDGDGVARGVYLHAGIGQAHWPALGLALTDLPPQRAHGLPDPDPALDSPYQWRRNDYVRVRYAGPPERLPQVSYADVLEGRVDASMLRGRRIVVGMTASGIALRLLTPTTREYWMSASEYQANIASMLLQDKQIDVLPRAWQDTLAGMLVAMCVLLLGLRLPWVVALCSLPAAPLLSWLLLRTGSLWWAPASALLGIVLVLTAWATWRIASWHRQANRDALTGLGNRLRFEQSLQQECDAARRSGKPLTLALIDVDHFKHHNDRHGHQVGDRVLCEVARLIQAHARRPRDMAARYGGDEFALVLPDTPVEGARQVIEDLISCIRALPPPGDGSDTGVTLTIGVYTRVPDSDLQPHHFVEGADNALYRAKDNGRDGYVIDGGTPGP
>NZ_CP049368.1|WP_165377776.1|3225392_3227093_+|LysM-peptidoglycan-binding-domain-containing-protein
MGSCSCAPALPGLHSVTVGRSSSFIIRFLRALLCALCLLPALAGAQDWNYRVRPGDTLWDLGAAYLKPSVGWQQLQQHNRIDNPYRLPPGELLRFPIGWLRVEPAPARVLAVRGQVELSAADGSSSRAVRAGEQLHIGDAIQTKADSSITLEFADASRLQLREYSRLRLDQLSRYGRTGMVDTRLRLQQGRASNRVTPARGPASRYIIDAPTATSSVRGTVFRVSAGDDARAGATEVLEGKVQVGNPHGQRLVHPGQASRSAGSGTAPEAVSGLLPAPHLRADSTRLGALPAQLAWEPVTGADHYRVEVVQAATPEILLFAATTTDTGLVIGELPPGALRLLLRAVDAQGVEGLDASEDFLLSDQPPPPLTISPVQGQTVNSDRPRFHWSQAPGASSSVLQVADEPQFLQPLREQSTDGTDLRLGEPLPPGQYFWRIASRDGQGHQGRYGQALTLQLSNEPVDPALQPPEATDGELTLRWQAGSDGQRYRVQVDRRGDFSAPLIDSTVDEPQVSLKRPWRGTLHIRVQYIDDDGHAGPFSPAQQVKLPCRLCYGAGGGVLLLWLLL
>NZ_CP049368.1|WP_100553177.1|3236839_3237289_+|DUF2147-domain-containing-protein
MRKTFKTLLLALPLCLAALSAQAADSAAGRWKTIDDKTGKVKSIVEISQAANGTLTGRVVEILHSDKGPNPVCDGCEGANKNKPVRGMTILWNLAQDKGSTSKWSGGTILDPGNGKTYKSKLELQSGGTKLDVAGCIAFICRTQTWVRE
>NZ_CP049368.1|WP_165377783.1|3237391_3239470_+|methionine--tRNA-ligase
MTRTALVTTALPYANGPLHLGHLVGYIQADIWVRARRMSGGKAWFVCADDTHGTPIMLAAEKAGVTPEAFIANIQASHERDFAAFGVAFDHYDSTNSATNKALTEAFYLKLEAAGHISRRSVAQFYDPAKGMFLPDRYVKGICPNCGSADQYGDNCEVCGATYAPTDLKEPRSVISGATPEMRDSEHFFFEVGHFDGFLRDWLAGDVALPGVKAKLGEWLNAEGGLRAWDISRDAPYFGFEIPGQPGKYFYVWLDAPIGYLSSFQTLCGKIGEDFEAHLRAGTSTELHHFLGKDIVNFHGLFWPAVLHGTGHRAPTRLHVNGYLTVDGAKMSKSRGTFVMARTFLDAGLEPEALRYYFAAKSGGGVDDLDLNLGDFIARVNADLVGKFVNLASRCAGFISKRFDGQLAAQLPDAAQYQRFVDGLAPIREAYERNDPAAAIRLTMTLADEANRYIDDVKPWVIAKQEGADAQLQAVCSQGLNLFRVLVTALKPVLPATAAQAEAFLAAPVNDWTELAQPLLGHRITEYTPLFTRIDPKKIDAMIDASKDTLTAAAAAPAAKVEAAKPAAPVVAKDEAKSADAPAYIGIDDFAKLDLRIGKVLVCEFVDGSDKLLRFELDAGELGKRQIFSGIRASYGEPEALVGRSVVFIANLAPRKMRFGLSEGMILSAGFDGGALALLDADSSAQPGMPVR
>NZ_CP049368.1|WP_165378631.1|3239546_3240137_+|HAD-family-hydrolase
MELALFDFDHTVTTCDTYGRFLRRVATAEQLAQAWWKVGPWLLAYKLKLISAERIRARVTRLTFSERHADDIETLAAGFSREFLPDVVRPEMLEQIRWHKEQQHTVVVVSGSLDLYLRPWCEQLGLQLICNRLESESGRLTGRYAGGDCGPRKVEHIRRQFDLARYTRIHAYGDSAEDRPMLALAHERWYRGKPLK
>NZ_CP049368.1|WP_089236389.1|3240161_3240575_+|Rnf-electron-transport-complex-subunit-RnfB
MSLIPPLTERLDRLLPQTQCGQCGYDGCRPYAQAMARGEVGVDRCPPGGDAGARALAQVLGVPALPFDRNRGEHKAPQVALIVEADCIGCTKCIQACPVDAIVGGAKYMHTVIADLCTGCELCIPPCPVDCIELVLV
>NZ_CP049368.1|WP_025879081.1|3241826_3242174_-|RidA-family-protein
MMERYDVGPRMSEMTVYNKVAYLSGQIPEDTSQDITGQTRQVLAEIDKLLALVASDRQHVLRAEIFLADMADFEGMNKAWDEWVVEGATPARATVEAKLAHAEWKVEIIVTAAVP
>NZ_CP049368.1|WP_165377784.1|3242367_3244932_+|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF
MTAPTDSVPAAAAPTWKRVVTIVVPLLILALALHGLAGEFDEHGYRAIRQAFRQLSAAQIALTVLLGLASYACLIGFDAIGLRRSGIRVHPARIGITAFLAHTLGQTVGFAALTGGAVRLRGYRSAGLDLAQIGQVVLMSTLGFIFGAWLLIGVALCMEPAAAALALPLDPAAVRVVGIVALIAFAATFILVGRDGRQFRIFGHGLWLPDRRTMLGVTVLSVVELVLASAAFYVLLPDSTPTGLPGFVGLYLVAVLAGLVSTVPAGLGVFEWSLLKLLPQVAPAAVLAAALIYRVSYYVLPLLLATVLALAPALRQPLQASAGATRAGWYALRPWLPQIIALAAFSVGAALVIDGTLPTPRRHLINASLPILETSHLIGSLGGVALLLIGQGLARRSHAAWMLAMAICVIAPLPIWLRGGQPLIALSALLVAMALWAARREFYRQGALLDEAWSWPWLRNLGLVLVAVTWLLFFTYSHVEYQNELWWQFAVSGNAPRALRALLLVAMALVMFGLARLLHSTRSPLPPADDATLQALAPVLAGATDTQACLVLTADKAVLRDAEHKGFVMMQRYGGSLIAMGDPVGPPEVARALIWRFREEADRLGLRPVFYQVGEAYWQTYLDLGLGLVKLGEEAMVPLHDFGLEGRERADLRQAWNRGKRGGLSFRVAPAEEIPALLPRLHAISNAWLDDKSGDEKGFSLGSYDPDYLVRFPIALVEAEGRIVAFANLWQAPAGAELSVDLMRHVSDAPKGTMDFLFIELFLWGRAQGYARFSLGMAPLSGLAQHRLAGRWNRLAGLLARHGERFYGFSGLRRFKSKFDPQWRPRYLAAPGGMHLPAALLDATRLISLDPRRN
>NZ_CP049368.1|WP_165378632.1|3245058_3246363_-|virulence-factor-family-protein
MGLVLALAALPAMAAVQQVSHGRFDQVPVHVPAGAPQRVVIWFHDGADAGRTPIEALRADGALVASVDVAHLRGVLKREGNSSCAFGAGDVENFSRWVQAFLHLPGYHLPLVGGSGEGAELAYALAAQADTQVFAGLLTSGFCPAHTHERMVCGDGVKHDRLQPSELNFPWLNAAGAPGCSTNSAGPFVQQVAMAREFKRTVAGDATPGLVAAARVIGAQAGIALAPPPDALKGLPVVEVPAQGSGDTLAVFVSGDGGWAGLDKDVAGALAEHGVAVVGLDSLRYFWSERTPQGFAVDLQKIIGHYRQQWQRDKVMLIGFSQGADVLPATINQLDAGTRAGLERIVLLSVGKNADFEFHVSNWLGGGGGGLPIAPEVAKLPADRTLCVYGDKDEDALCPDLPGNDGVHKVKLPGDHHFGGDYDRLAEVILKGGA
>NZ_CP049368.1|WP_165377785.1|3246483_3247101_-|DUF998-domain-containing-protein
MNRARPAAMLALVALLLFVATALWTQFARADLDWVKATLSLYLHGPWGLALRTAYCMLALAIAVLGIALYRYSVGPRRSAAALLLFCVAAGGLATVAIGDSWLPEATPLLAPLIHGLAANTAFLCASVGMLLQAWYLRREPGWRRSAALLWGWAWLAFVLLWMHVLWRGGPPRGLGQKLVIAVIVGWLIWLALALYRRGRAAGTR
>NZ_CP049368.1|WP_165377786.1|3247097_3247370_-|hypothetical-protein
MLPRGPTCAVNWAPERAATLSICNRVVLLPAVTVSDTPADPRPLPPEEPGPNECCGSGCPLCVLDLYSEELQRYRKVLAEWKARHPDADP
>NZ_CP049368.1|WP_108266381.1|3247326_3247929_-|hypothetical-protein
MDFAPLTLAPAHWQALQDAYATPPRAYHHFGHVRAVLQHCQAVAEGPGWQQPAEVYLAALYHDAVYQAGRKDNEAKSAALALQAIAASPELASVDAGRVEQLILLTARHGELGPADVDAEAALFLDCDMAILAAPEAVFSAYDRGVAEEYKGVVPGFLYRAGRRRFLQGLLRAPRIFLSDFFDQRLDAAARANLRRQLGA

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Crispr_ID: NZ_CP049368_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049368_6

3724201-3724369

Orphan

Consensus_repeat	Method
GTAGATCCACGCCATGCGTGGATG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP049368_6

>merge|NZ_CP049368|6|3724201-3724369|CRISPRCasFinder
GTAGATCCACGCCATGCGTGGATGGGCGGGCCAGGACATCCGCAGCCACCCATGGGGTGGCTCTACTGGTAGATCCACGCCATGCGTGGATGCATGCATCCGTGCCAACCAAGGTTGGCACCTACCAGGGCAGCGGCCAGTTGCAGTAGATCCACGCCATGGGTGGATG

>NZ_CP049368|6|6|3724201-3724369|CRISPRCasFinder
GTAGATCCACGCCATGCGTGGATG	GGCGGGCCAGGACATCCGCAGCCACCCATGGGGTGGCTCTACTG
GTAGATCCACGCCATGCGTGGATG	CATGCATCCGTGCCAACCAAGGTTGGCACCTACCAGGGCAGCGGCCAGTTGCA
GTAGATCCACGCCATGGGTGGATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049368.1\|WP_165378042.1\|3736352_3737684_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NZ_CP049368.1\|WP_165378043.1\|3737664_3738780_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340846
NZ_CP049368.1\|WP_165378039.1\|3729672_3730320_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_CP049368.1\|WP_100553502.1\|3730336_3731695_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP049368.1\|WP_165378033.1\|3719505_3720084_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP049368.1\|WP_165378034.1\|3720073_3721135_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP049368.1\|WP_165378028.1\|3712495_3714232_+\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NZ_CP049368.1\|WP_165378031.1\|3717248_3718028_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP049368.1\|WP_089236754.1\|3728855_3729536_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP049368.1\|WP_165378035.1\|3721234_3722365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165378032.1\|3718087_3719506_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP049368.1\|WP_165378030.1\|3715651_3717238_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_CP049368.1\|WP_165378038.1\|3727595_3728732_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP049368.1\|WP_165378041.1\|3734697_3735615_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	unknown	unknown	gnl\|CDD\|181542
NZ_CP049368.1\|WP_165378644.1\|3735715_3736165_-\|transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP049368.1\|WP_089236746.1\|3722408_3723182_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183716
NZ_CP049368.1\|WP_089236730.1\|3714215_3714467_+\|acetolactate-synthase	unknown	unknown	gnl\|CDD\|226486
NZ_CP049368.1\|WP_165378029.1\|3714563_3715655_+\|threonine-dehydratase	unknown	unknown	gnl\|CDD\|236339
NZ_CP049368.1\|WP_165378037.1\|3724430_3727592_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP049368.1\|WP_165378040.1\|3733338_3734637_-\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589

Protein	Function_ID	Function_description	E-value
NZ_CP049368.1\|WP_165378042.1\|3736352_3737684_-\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	1.20758e-17
NZ_CP049368.1\|WP_165378043.1\|3737664_3738780_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	6.68694e-49
NZ_CP049368.1\|WP_165378039.1\|3729672_3730320_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	4.11924e-64
NZ_CP049368.1\|WP_165378034.1\|3720073_3721135_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP049368.1\|WP_100553502.1\|3730336_3731695_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.26656e-105
NZ_CP049368.1\|WP_165378033.1\|3719505_3720084_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	4.30882e-93
NZ_CP049368.1\|WP_165378038.1\|3727595_3728732_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.32619e-58
NZ_CP049368.1\|WP_165378028.1\|3712495_3714232_+\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NZ_CP049368.1\|WP_165378031.1\|3717248_3718028_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.57413e-23
NZ_CP049368.1\|WP_089236754.1\|3728855_3729536_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	1.93762e-27
NZ_CP049368.1\|WP_165378032.1\|3718087_3719506_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP049368.1\|WP_165378030.1\|3715651_3717238_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_CP049368.1\|WP_165378041.1\|3734697_3735615_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	gnl\|CDD\|181542	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase.	0
NZ_CP049368.1\|WP_165378644.1\|3735715_3736165_-\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	8.15352e-08
NZ_CP049368.1\|WP_089236746.1\|3722408_3723182_-\|SDR-family-oxidoreductase	gnl\|CDD\|183716	PRK12744, PRK12744, SDR family oxidoreductase.	5.85453e-176
NZ_CP049368.1\|WP_089236730.1\|3714215_3714467_+\|acetolactate-synthase	gnl\|CDD\|226486	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown].	9.48358e-23
NZ_CP049368.1\|WP_165378029.1\|3714563_3715655_+\|threonine-dehydratase	gnl\|CDD\|236339	PRK08813, PRK08813, threonine dehydratase; Provisional.	0
NZ_CP049368.1\|WP_165378037.1\|3724430_3727592_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP049368.1\|WP_165378040.1\|3733338_3734637_-\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0

>NZ_CP049368.1|WP_089236746.1|3722408_3723182_-|SDR-family-oxidoreductase
MTDHRIQGKTVLIAGGAKNLGGLIARDFAEQGAKAIVIHYNSAATQADAEATVAAVQAAGAKAVALQADLTSAAAMERLFADAVAAVGRPDIAINTVGKVLKKPMLEISEAEYDQMSAVNAKTAFFFLKEAGRHVNDGGRICTLVTSLLGAFTPFYSSYAGTKAPVEHFTRAASKEFGERGISVTAIGPGPMDTPFFYPAESADAQAYHKTAAALSAFTRTGLTDIADIVPWIRFLVTDGWWMTGQTILVNGGYTTK
>NZ_CP049368.1|WP_165378035.1|3721234_3722365_-|hypothetical-protein
MDALGFIHAWRGSTVGPQVDSFRAFTGTIVASSRAGAPAMFFRTTCASALLLVACSGSAIAQPADADALLFQHDLRDVLECGASADVQQAVVSRLRAARYADAAERLPYLRDWRFEQEGEDDDHRVTVITPPQSITVHGVEVPRLFADAFGFSVALDPAQRDRIVAAHSLRLQSSTLQEPFELWSTPTTPIIVRSAGDGYRLGCAPSTNGNRAAVRQLPAVEVQDLQDAIHCRADEGGMRRLQAFWQRLSEQPQFEWPQDVRSVNEVNYTVGDDDLHLLLIGLQVPIQAYGVSTHTIALAFGGFFGADLGAVPVAPVLAQAGMDTSHTVGKDAWQRLLPPVAFSGGSWIPQHIVMRTDEGRVVAGCTSDYARSTSR
>NZ_CP049368.1|WP_165378034.1|3720073_3721135_+|3-isopropylmalate-dehydrogenase
MHAEIVVLPGDGIGPEVAAAAVAVLNAVAKRFNHTFTFSEHDIGGIAIDRHGEPLPASTLAACQAANAVLLGAVGGPKWSDPNAKVRPEQGLLAIRKALGLYANLRPVRTHEAALHASPIKAELLQGVDFVVVRELTGGIYFGDKTRDPDSASDLCRYTVTEIERVLRSAFRLAQQRRAKVTSVDKANVLETSRLWRDVAARIGREEFPDVALEHQLVDSMAMHLLAKPREYDVIVTENMFGDILTDEASMLAGSLGLLPSASLGEPGAVGIYEPIHGSAPDIAGKGIANPYATIFSAAMLLRHSLGLEAEAAAVEAAVHAVLDDGVFTADLAAKGHAVSTATATDAVLAKLG
>NZ_CP049368.1|WP_165378033.1|3719505_3720084_+|3-isopropylmalate-dehydratase-small-subunit
MSGFRTLSSASVVLRQTNIDTDQIIPARFLSTTERAGLGRNAFNDWRWQSDGSPVADFAFNQPHNAGRSILLAGRNFGCGSSREHAPWALTDLGLRAIVSSEIADIFRGNSLKNGLLPIVLDEADVQVLMQRPDDELTIDVATRELRTPDGRVYSFPLDGFSQTCLLEGVDQLGYLLGRVPEIERYESEHAR
>NZ_CP049368.1|WP_165378032.1|3718087_3719506_+|3-isopropylmalate-dehydratase-large-subunit
MTSAPRTLYDKLWDAHVVVPETDSAPAVLYIDLHLIHEVTSPQAFTELRERGLKPRRPDRTKATMDHSTPTLPAAADGTLPYASAASEAQVAMLARNCAEHDIELFDMTSDNRGIVHVIAPEQGFTQPGMTIVCGDSHTSTHGAFGSLAFGIGTSEVGHVLATQCLLQRKAKTLAITVDGEVAPGIGAKDVVLHIIGVIGVNGGTGHVIEFRGSTIEAMDMEQRMTLCNMSIEAGARAGMVAPDQATFDFVANTPRGPKGADFDAAVARWTQLRSDEGARFDSEVHIDAAGIRPTLTWGTHPGTAIAVDAPIPAANDAAAQKGLDYMHFQAGQTLAGTPVDVVFVGSCTNGRLSDMREVAQVLRGRRVAERVRMLVVPGSEIVKRQAEAEGIHEIVRAAGAEWREPGCSMCIAMNGDLVAPGQLAVSTSNRNFEGRQGPGSRTLLASPMSAAWAAVQGHVADARELFAQEVA
>NZ_CP049368.1|WP_165378031.1|3717248_3718028_+|methyltransferase-domain-containing-protein
MSAFDTATATSSAGQQWNAQDYAIDAGFVPTLGGAVARLLHARAGERILDLGCGDGVLTTELALSGAHMQGVDASPEMVIAARARGVDAQVMDGHALTFDGAFDAVFSNAALHWMPNPDRVLEGVRRALRPGGRFVAEFGGHGNVATIVAAVQAARVAHGHGASTFQWYFPTADGYAERLRQHGFQVQLTECLPRPTALPTGVAGWLRVFAAPLLDDLPAEARATVRDAATALLADLPRNATGQPLADYVRLRVLARRR
>NZ_CP049368.1|WP_165378030.1|3715651_3717238_+|2-isopropylmalate-synthase
MTTIERITTPRIRIFDTTLRDGEQSPGCSMSPPQKLVMARALDELGVDIIETGFPASSQSDREAMALIGRELRRPSLSLAVLSRCLQADIETSARALEAAANPRLHVFLSTSPLHREHKLRMTREQVLESVRRHVALARSYIDDVEFSAEDATRTELDYLIEVSRVAIAAGATTINLPDTVGFTTPEEIRTMFQQVIAGVADVPNAANVIFSAHCHNDLGLAVANSLAAIEGGARQVECTVNGIGERAGNCSLEEIAMVLKVRQAFYEQDTAIDTPRIVGTSQLLQRLVGMPVQRNKAIVGANAFAHESGIHQHGMLRHRGTYEIMRPEDVGWEDSQMVLGRHSGRAAVEARLRALGFWLEEDELKLVFEQFKGLCEQQRVVTDADLQTLMQGGSNAQGYRLASMTISDVGSRANALVELSDPDGNRVAETAQGDGPVDALFGALSAATGVQLMLDSYHVHSVGIGADARGEANLSVRHEGVEYDGTGTSKDIIEASALAWLDVANRLLRQRQANAGVSTEAPATATA
>NZ_CP049368.1|WP_165378029.1|3714563_3715655_+|threonine-dehydratase
MPAADASTESDVGDVTVADVLAAQARLRRFLPPTPLHHAERFGTWLKLENLQRTGSYKVRGALNALLAARERGDTRPVICASAGNHAQGVAWAAYRLDVPAIAVMPHGAPATKIAGVAHWGATVRQHGNSYDEAYAFAVELAQRHGYRFLSAFDDADVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKSQGVRIVGAQVEGVDSMARAIRGDVREINPVPSLADGVRVKIPGFLTRRLCTSLLDDVVIVREAELRETLVRLALEEHIIAEGAGALALAAGRRVAGRRKCAVVSGGNIDAGVLAGLLTDIRPRPPRKPRRRRTETPRSPGKATATAFPTPSPSPLQAVAPAVEEISL
>NZ_CP049368.1|WP_089236730.1|3714215_3714467_+|acetolactate-synthase
MQYRLDLVLQPAEGALLRVIGMAERRGFAPRAITGAPVAADDGRWHLQLVVDSQRPPETLCRQMEKIYDCVSVQMTALEGVSA
>NZ_CP049368.1|WP_165378028.1|3712495_3714232_+|acetolactate-synthase-2-catalytic-subunit
MNSPTHRSAPPNGARWLTQALEAEGVRTLFGYPGGTIMPFYDALVDSSLKHILVRHEQGAALAANGFARASGQVGVCVATSGPGASNLVTGIADAMLDSVPMVCITGQVATPLLGTDAFQELDVFGLTMPIVKHSWLVRSVDDLPRVVADAFRIAREGRPGPVLIDLPKDVQLADASHLPAHVPASVEPPPAAADAAIAEAIAALAAAEKPVVYAGGGIALGDAVQDLRAFVEASAIPTVMTLRGLGALPPQHPQSLGMLGMHGTRAANMAVQESDLLLVLGARFDDRATGKLAEFAPFARVVHIDADAYEISKLRSADVAVPGNVGHAIRALHAAFPSPKAHQDAWRKRCAQHRDRFAARYDAPGQHIYAPALLKRLSELAPADTVVACDVGQHQMWVAQHCRFNHPRNHLTSGALGTMGFGLPAAMGAQFACPERTVVLVSGDGSFMMNVQELATIARCRLPVKIILLDNSSLGMVRQWQELFFAERYSEIDLSDNPDFVALAKVFGIAATRIDARDDVEGGLAALLAEPGPALLHVAIDARANVWPLVPPNTANSTMLESNPAHARQEIPNAIPA
>NZ_CP049368.1|WP_165378037.1|3724430_3727592_-|efflux-RND-transporter-permease-subunit
MRRFNLSEWALGNRALVLFAMLAFAVIGAWSYKHLGQSEDPPFTFKAMVVRTMWPGATAEQVSRQVTEPIEKALMNTGEYEFIRSYSRPGESQVIFMARDSLRSKQIPDLWYQVRKRVGDIRATLPREIVGPFYNDEFGDTFGNIYALTGEGFDYAVMRDYADRIQLELQRVPDVGKIDLVGLQDEKVWIELSNTKLATLGVSLQQVQQALADQNAVSATSFFETPTDRVQLRVTGQFDSIEDIRRFPIQAGERTLHLGDIAEVKRGFADPASPKMRFMGQDAIGLAVAMKDGGDILKLGATLDAEFERLQKTLPAGMQLRKVSDQPHAVEESVGEFVQVLTEAVVIVLLVSFFSLGLRTGLVVGVTIPLVLAMTFFVMHYFDIGLHKISLGALVLALGLLVDDAIIAVEMMATKMEQGYDRLRAASFAWESTAFPMLTGTLITAAGFLPIATAASSTGEYTRSLFQVVTIALVVSWIAAVLFIPYLGDKMLPDLFNPQLPKPDSLAGRWRAKRLQWADRHPSLARWIAPKVHAHDHDPYQRPFYTRFRSFLDTCLRHRWWVIGATIALFIGSLVLFRFVPQQFFPDSTRPELMVDIELAEGASLAATQAQADKLEKLLKGREGISNYVAYVGTGSPRFYLPLDQQLPATNFAQFVVLTEDAKARESTRDWMLKEVIKQFPDVQMRVTRLENGPPVGYPVQMRVSGEHIAQVQAIARKVEAKVRENPHVMNVNLDWSEPSKVVRLVIDQDRARALGVSSAQVSQFLSSSLSGMSVSTYREGNRQIEMLLRGPDNERAQLDLLGSLAIPTSSGTAVTLSQVARLEYAFEDGIIWHRNRLPTVTVRADISDGKQPLDVVQQIVPTLDGIRAELPSGYLLETGGSVEDSARGQNSIKAGMPLFLIVVATLLMLQLRSFSRAAMVLVTAPLGIIGATLFLLLFRAPFGFVALLGTIALAGMIMRNSVILIDQIQQDIDAGHDRWHSIIDATVRRFRPIVLTALAAVLAMIPLSRSAFYGSMAISIMGGLIVGTVLTLVFLPALYAAWFRVKPDESGA
>NZ_CP049368.1|WP_165378038.1|3727595_3728732_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKNMRWLGVGVLVVVLAACGKQAAEPVAAIPVLVVHPTTQDGQAAAAYPGEVRARQESPLSFRVGGNLVKRHVDAGERVKKGQLLAELDAADYASQAAASQAQLAAAEADLVRARDDQKRYAKLAEDQLVSRSALDQQTAAFKAAQGQANAARANLAVARNQAEYAQLRAPADGVIASRQAEAGQVVSAGQTVFTLAADGGREVLIALPESNIRDYKVGQSVQVELWNRPGQLLPGTLREIAPAADAQARTYATRVSLAPEALSEVELGQSARVFATAGRSGALQLPLAAVLRGSDGKASVWVVNPSSGALKATPVQVGAYGAQAVPVVSGVGAADWVVAAGGHLLREGQVVTPVDRQNRPVLAPSAAKPAPAAGKGH
>NZ_CP049368.1|WP_089236754.1|3728855_3729536_+|TetR/AcrR-family-transcriptional-regulator
MSSPTSRKPSAKPAAKAAGPGRPKDLGKRAAILEAAKTLFIEQGYSGVSMDSIAAQAGVSKLTVYSHFGDKETLFSEAVQSKCIEMLPDALFVADVEGPLRDQLLGIGMAFFEMITSDAALSIQRVMMAPETDERLRELFWQAGPQRTCEALADFMRLRAERGELDIPDCYIAGQQFLTLVKGEVHMHMMCGMPLSPVETDAAIHVAASVDFFLRAYAPREAGTAG
>NZ_CP049368.1|WP_165378039.1|3729672_3730320_+|protein-L-isoaspartate-O-methyltransferase
MTIDYAHARELMVEQQIRPWDVLDIKVLDVLARLPREAFVADAHRALAYADVELPIGNGQKMMKPVVEGRTLQALDLQPGDEVLEIGTGSGFLSACIGALARDVLSLEIDPELAAAARARLDATGLGTNVRVEVADGLAWQTERRFDVICVTGAVDVVPSQFASWLRPGGRLYVIQGRSPAMEALLVKADGSTESLFETDIDYLRGAAPAPQFHL
>NZ_CP049368.1|WP_100553502.1|3730336_3731695_+|TolC-family-outer-membrane-protein
MIRRSLAVALATALLPLSAHAADLLQVYEMARNGDPQLSAAESTRLYDKEGAVQARAALLPQINGQATLNRTRSEANADANSGSVTSKRRNYTVDGTQTLFNWTQINNLRSQRELSKAADFTLDSANDNLIVRTSAAYFNVLVAIESLNAAQTNEAAAKKQFDFADKRLEVGLAPITDVHEARAQYDQARANAIVAQNTLADNYQALTELTGQPVMNLKGLPADFRPEVPANRGNLDQLVQQATTQNPALKAQELKVGAAEAGVQAARGGHYPTLSLGGSWGKSATWGDSVGAGSLSPDARTNSIGLTLSVPIFSGGATQSGVRQALAQRDIAQDGFEQQKRALDRNTRNAYQTLVQGISEVEARRLAVVSAQSAYDASQVGLEVGTRTVLDVIQNQRILFSAQLDYAQARYNFLQNRLLLSQAVGGLDVAELQDLNRLLTQDAGNPSTTTN
>NZ_CP049368.1|WP_165378040.1|3733338_3734637_-|3-deoxy-D-manno-octulosonic-acid-transferase
MRKDPVEWILRGLYSAVLYLLLPITVYHLVWRGFRVREYFRRWDERYASYPQPSGQPRVWLHAVSVGEVNAAAPLVNALREQRPDIRWVITTITPTGSERVRALWGDALDHVYLPYDVPGSVNRFLGHFQPSLALILETELWPNMLFGCRDRRIPVYILNARLSARSLRGYRMLAALIRRALRTVTCVAAQSQDDAARFVQLGAAPEQVQALGNLKFDIATPDVQPFIEQFHAHVPATRPVWIAASTHDGEEQAVIDLHRRLRQQHPDLLLLWAPRHPERFPKVEALAREQGWSVATRRAQQWPGASSDVFVIDTLGELMPFYGCAQVAFVGGSLQAIGGHNLLEPAAMGTAAVTGPHLHNFAEISRRMREAGALLIGEDVQAVGDLLLHLLDDAQAREDMARAGCTLVSNGRGALQRTLQLVAPHLPPPLA
>NZ_CP049368.1|WP_165378041.1|3734697_3735615_+|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase
MSDATTAVRPSLRDPRNWPMFAVMFTAFGIARLPWILQRALGRGVGSIAWRLAGSRRHAAEVNLKLCFPEKDEAWRKRLVRDSFDALGVGIFECARSWWGSIDSIRPQVHIEGLEHLKQMQAEGRGVLLVSGHFMTLEMCGRLLCDHVDLSGMYRKHKNPVYEWAVKFGRLRYAKAMYANEDIRATVRHLKKGGFLWYAPDQDMRGKDTVFVPFFGHTASTITATHQLARMTGCAVIPYFHRREGGKYFLKIGAPLENFPSEDVEADTARVNQAIEQMVREAPDQYLWIHRRFKRQPGGRSDFYK
>NZ_CP049368.1|WP_165378644.1|3735715_3736165_-|transposase
MASPRLRYGRYSRTGNVYSLTTATHGRAPLFADAANVAVLVDTLRFIERNAFSHSLAWVVMPDHLRWLMELQKGTLAQCMAVLKSRSSRLLNRQPGRKGPLWQHGYHDHAVRTDESLHEKAMYILANPVRAGLAGELGEYPHAWCRWPL
>NZ_CP049368.1|WP_165378042.1|3736352_3737684_-|O-antigen-ligase-family-protein
MPTSLADATPPLRDERAGRWAPWWVLAYVALWPLPGIAETVLGLGALYAAARMVIRRVQHRPHLLSPAAWALTSILFLGYWLPQAFSAFDAVDPSASWIKAAAGLRYLPFMWLVAIAVATPQRRRLTLGGLAVITGLWTLDALVQALAGTSPWFWSLQQIKLAISGHALCPAAEAALADRLSGALGPCNLKFGQVLASLSPFLLLPVARRFGNAGWLLAAAAVGVVLLLAGSRASWITFSLVVVYSGVRQLGWKRLGLLALVGVLSVGVLTASVPQLRERVARTAMAWEGGEDGVEQALSGRTRIWSAAACMIEAHPINGVGARGFRDAYPHCVADEGPAVWGTMPALHAHQIVLEILAETGVLGLLLWLAAVAQAWRAWRFAPAAARERARPAMLALAVTVFPLNTHLAFYSAFWGGLTVLLAALFVGTLLAREPDDLPRAA
>NZ_CP049368.1|WP_165378043.1|3737664_3738780_-|glycosyltransferase-family-4-protein
MRRLTVVQLLPALHSGGVERSTLEIAAALVAAGHRALVVSAGGRLVQPLLDSGAEHLTLDIGRKSLLTLRHLPTLRRLFTEVGADIVHARSRLPAWLGLYAIRAMQPAQRPHWVTTVHGLNSPGRYSAVMTSGERVICVSNSVRDYVHTHYPTVAHDRLQVIPRGVDVSQFPRVARADRRPRLALAADYPWLAQVDGPLLLLPGRGTRLKGHAHALQLLADVRAAGVPAQLWMLGTDEPGREAYLAELRKQADVLGVTGAVHISTPTARIAQAYAASDLVLQLSDKPEAFGRTVVEALSVGRPVLGWDHGGVGELLQQLQPSGAVPLGSAQLLGERALALLAQPPSLPGRIPFTLQAMQRDTLRLYADLAG

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Crispr_ID: NZ_CP049368_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049368_7

3873570-3873686

Orphan

Consensus_repeat	Method
GGACGGTTGCCGGCCAGCGGCCGGCACTACCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049368_7

>merge|NZ_CP049368|7|3873570-3873686|CRISPRCasFinder
GGACGGTTGCCGGCCAGCGGCCGGCACTACCGGAGAGCTTTGCGTCGTCGAAGGCTCGGGGGCAGACGGGTTCGTTGCAGAGGCGGACGGCTGCCGGCCAGCGGCCGGCACTACCGG

>NZ_CP049368|7|7|3873570-3873686|CRISPRCasFinder
GGACGGTTGCCGGCCAGCGGCCGGCACTACCGG	AGAGCTTTGCGTCGTCGAAGGCTCGGGGGCAGACGGGTTCGTTGCAGAGGC
GGACGGCTGCCGGCCAGCGGCCGGCACTACCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049368.1\|WP_089236951.1\|3872922_3873408_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP049368.1\|WP_165378118.1\|3867504_3868605_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP049368.1\|WP_165378121.1\|3870840_3872919_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP049368.1\|WP_049463859.1\|3876084_3877023_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP049368.1\|WP_165378119.1\|3868999_3869410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165378116.1\|3862872_3864117_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP049368.1\|WP_165378124.1\|3880155_3880887_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_089236961.1\|3885233_3885560_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_146187009.1\|3865531_3865717_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_135274296.1\|3865948_3866242_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP049368.1\|WP_005411083.1\|3884244_3884697_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP049368.1\|WP_165378120.1\|3869731_3870844_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP049368.1\|WP_165378117.1\|3864113_3865259_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP049368.1\|WP_025877269.1\|3883403_3884165_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP049368.1\|WP_089238112.1\|3884897_3885158_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049368.1\|WP_165377038.1\|3866238_3867102_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP049368.1\|WP_165378647.1\|3879538_3880153_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP049368.1\|WP_025877255.1\|3874755_3875802_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP049368.1\|WP_165378123.1\|3877236_3879210_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP049368.1\|WP_100553587.1\|3881014_3882943_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341062

Protein	Function_ID	Function_description	E-value
NZ_CP049368.1\|WP_089236951.1\|3872922_3873408_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	2.70844e-29
NZ_CP049368.1\|WP_165378118.1\|3867504_3868605_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.03968e-145
NZ_CP049368.1\|WP_165378121.1\|3870840_3872919_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP049368.1\|WP_049463859.1\|3876084_3877023_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	9.26637e-116
NZ_CP049368.1\|WP_165378116.1\|3862872_3864117_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	1.14898e-51
NZ_CP049368.1\|WP_135274296.1\|3865948_3866242_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	3.596e-06
NZ_CP049368.1\|WP_005411083.1\|3884244_3884697_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	3.60475e-42
NZ_CP049368.1\|WP_165378120.1\|3869731_3870844_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	9.60277e-147
NZ_CP049368.1\|WP_165378117.1\|3864113_3865259_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.02651e-135
NZ_CP049368.1\|WP_025877269.1\|3883403_3884165_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	7.21976e-138
NZ_CP049368.1\|WP_165377038.1\|3866238_3867102_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.25437e-57
NZ_CP049368.1\|WP_165378647.1\|3879538_3880153_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	3.65088e-28
NZ_CP049368.1\|WP_025877255.1\|3874755_3875802_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP049368.1\|WP_165378123.1\|3877236_3879210_-\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	2.83398e-93
NZ_CP049368.1\|WP_100553587.1\|3881014_3882943_-\|M1-family-metallopeptidase	gnl\|CDD\|341062	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain. This model represents the N-terminal catalytic domain of leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is poorly understood while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. Thermodynamic characterization using different biophysical methods shows that structurally distinct inhibitors of the LTA4H occupy different regions of the binding site; while some (RB202, ARM1 and SC57461A) bind to the hydrophobic hydrolase side, both bestatin and captopril are located at the hydrophilic peptidase side. LTB4H overexpression is associated with different pathological conditions and diseases such as cystic fibrosis, coronary heart disease, sepsis, shock, connective tissue disease, and chronic obstructive pulmonary disease. It is also overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well-known red wine polyphenolic compound with cancer chemopreventive activity.	0

>NZ_CP049368.1|WP_089236951.1|3872922_3873408_-|rod-shape-determining-protein-MreD
MSRLRDNRWVLPASVVVALLLGLLPLPALLQPLRPYWLALVLAYWVIEAPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP049368.1|WP_165378121.1|3870840_3872919_-|penicillin-binding-protein-2
MLPRRQVKNPHAEAEQFRRRAALGFFGVLVCLLGLGGWYFKLQVLDHDIYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIIQISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQELRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGEQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHAEFKALNDNPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDSHRGGHGWTDLRKSIAQSVNTYYYRLALDLGIERFDHYMEYYGFGQPTGIDLTGEISGILPSPAYKRKSRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSGLANGQLRTPHLVMQQRAGFDSDWVATEPGQSKPVSPNPNNLQAVREGMMATMLPGGSAARMAAGAPYTMAGKTGTAQVVSRKGTAAVNPRSLPMHLRHRALFVGFAPAEQPVIALAIAVEGGGYGGAAAAPIARKIFDAWLLGKMPEGMQSLDSERGTTAIGITAFDNEDVNARPAGDAAAAELGEHPVLIGMPAPPPAPAPVPGSPSAAAVPVGPRPTVAAEASR
>NZ_CP049368.1|WP_165378120.1|3869731_3870844_-|rod-shape-determining-protein-RodA
MSAFLRWAGEMLQRFFSSLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGVRFAVGLAAMWGISRMPILRIRSATPLIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVAMVIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWIGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRRHNPVHGGYG
>NZ_CP049368.1|WP_165378119.1|3868999_3869410_+|hypothetical-protein
MSASTYPYLFATLGEAAHQLPDDIARALETTLTATQAANSPGGPTLLDCLQRIRQVEAADGQPWPHKGRTQAQCMAMARIDRANAGLTFLLELLHASERVRVDGDDMQQLSDDAREGLLLACRGLSEYVDVQLQAA
>NZ_CP049368.1|WP_165378118.1|3867504_3868605_-|rod-shape-determining-protein-RodA
MPRVKWKRMLGGCREAVRTIDLPLLVALLILMGAGLAVLHSVNGPVHGQAMRFVGGLVAMWLLSRVSLLRLRAWTPAIYALSMLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTAAVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLQWRWVVAGLSAVSVAAPLAWFGLLRQYQKNRVLTFLDPAADPLGTGWNILQSRIAIGSGGMQGRGWGHGTQATLDFLPEYTTDFAFSVLAEEFGWIGVVTVFALYLFVVGRCLSIAVQARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHA
>NZ_CP049368.1|WP_165377038.1|3866238_3867102_+|IS3-family-transposase
MRYAFVASHRTRYPTRVLCRVLGVSVSGFHDYLRRQSANTHDADAVLRAELRAIHAASNCSYGRHRLVRALRARNHPIGHKRVARLMAEERIRGNIKGRFRPKASLGGSSQLAPNLLDRQFAAGTGPTAWVGDITYVATRQGWLHLAVVISVQTRQVLGYSVSERMTEDLVVKAFANAWALHPQRPGLIFHSDRGGQYWGNEFRQLLQSHGVVQSMSRRGNCWDNAVAESFFATLKTEEAAQPYSSREQASQSIAAYIHGFYNPARLHSALGYQSPNTYARQLKAAA
>NZ_CP049368.1|WP_135274296.1|3865948_3866242_+|transposase
MSHITRRSYTDEFKHQAVELAESLGPAAAARQLEMSVKTLANWVDAVRAGRSLTSEARRPATDLESEISRLRAENANLRMEREILKKAAAFFAKESK
>NZ_CP049368.1|WP_146187009.1|3865531_3865717_-|hypothetical-protein
MNLRKRISVIVPTTPHSSMAADEVPLKVGANSHFDAALILINGLVAIGLHNGGPFGMARRL
>NZ_CP049368.1|WP_165378117.1|3864113_3865259_-|lytic-murein-transglycosylase-B
MIRRSLACMLTLGLVACATQPTSPPTSPQASSTPRHPATKPQGPAEAAPEAAAATAAPVDLTPVPFETARAKFIADTAKRYGLKPDEIRNVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGKAFLAQHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFTSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAAGREEFNPTEWMPTWSLSDLAQRGYQPSAPVQPGATATPITLEGSAGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP049368.1|WP_165378116.1|3862872_3864117_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPGLIVLALAACSSAPKKPATAGHGGKPSGTVVQGKGGRPAHCPEGSPYAAATEDMSTRGNYTAGGLYKPGVKDTTPSYVPNVACIPEPLVTNEDRSAIGNKSPYVVLGKQYKVLDDTRNYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRAVQPGETNLMAQKPSRRERRAAEAAAATAAVASARPAPAARAVADSDIDRLVNRLPADGAPARGQPATTQAAVSTMPEVAVSSLPPSAPAPRPAAPVVAIAMPRSPAPASSPSLSQKVVGAVMLQVASFSNRDNANRAMGQLNAAGIVGATISDIAAGGRTLWRLRVPASDHASAAELAGRISGLGFGSPQIVKD
>NZ_CP049368.1|WP_025877255.1|3874755_3875802_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRFLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVFLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEAIEMEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDMDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP049368.1|WP_049463859.1|3876084_3877023_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGDPIPMGTVGSDFGPYREHFDALGIDLTRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRDVPGVSLGLVGPDGREGMIQNALEFHEDGVPFIFDPGQAMPLFNGPELREFIEQADYVVVNDYESNLLQERTGWNEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGFDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALSV
>NZ_CP049368.1|WP_165378123.1|3877236_3879210_-|LTA-synthase-family-protein
MLRAVWVSLYRRLCPIAAFFLFGLVALSLSRLGLALWHAARVSAADGWATVFLQGLRVDVSTLCLLYGIPAVLALLLPLEGRVGRAWRHLLRWWLILASVLLVFMELATPSFMAEYGLRPNRLFLEYLIYPEEVGMTLLRGHLLAVVIEVAAVVVLFWALLRGSRRWVGNSRRGAVEAGWLWRLPLAFLVLLLAALGVRSSLGHRPLNPALVAFSTDPTINALPLNSLYTVGYAARQLATRSETSRVYGDLPLAEVVSELRASSGLPASAYVSDALPSLALRPPQYQGKPRNLVIVLEESLGAQFIGSLGGRPLSPNYDRLSRQGWAFERLYATGTRSVRGIEAILTGFPPTPAESVVKLPASRQRFFTLADVLGRHGYDTGFYYGGESHFDNMREFFLANGFNRIVDRKDYRKPAFVGSWGASDEDLFGQADQQFRQLKAQGKPFFGLVFTSSNHDPFEFPDGRIDLYEQPKQTRDNAAKYADYALGEFFRKAMASPYWEDTVFLVVADHDSRVFGKNMVPIGNFHIPGLILGGGIEARRDTRIVSQIDLPPTLLSLLGIADPTPTVGQDLTDLQRLQPGRALMQYDRNLAWMEGNDVAILQPDKPAQGFRYDPASDQLQPQPLRPELARRAHAYAMWGTLAYEKELYRLPEKAKP
>NZ_CP049368.1|WP_165378647.1|3879538_3880153_-|HAD-family-hydrolase
MDARVAAPALSTIRHWVFDMDGTLTVAVHDFARIKRELAIPQEDDILTHLAGLPAAEASAKHAWLLAHERALAAASQPATGAVALVRALQGTGCRLGILTRNVRSLAQVTLQAIGLGDVFAEDDIIGRDEAEPKPSPAGLQYFLRRWQVEPSQVVMVGDYRFDLECGRAAGSRTLLVNALDNPWPGMACWHLPDCAAVLERWRD
>NZ_CP049368.1|WP_165378124.1|3880155_3880887_-|hypothetical-protein
MKRLILLTACTLALAACSNPEEERKAQEAAAAAVQAQKEAKAEDVAKQYDMAVAAQDWERARLHGASLLDQYKDTAAAERIAAGFDEVKSKGDAARDLRRMQALWQYNQIPVGNKGNQVSAQIFSKERVDVDGSGAKPVQLVFRDHPEWKRHAYLVLQAGDFRCPQCTVKVTVDDGKPISMAAWRPKTDEAIAMFITDQKALWKLAAKGKSISIEFPVKAGGTRTAVFETGGVDASRMPAWWH
>NZ_CP049368.1|WP_100553587.1|3881014_3882943_-|M1-family-metallopeptidase
MRNPLMLLPLAVALAAGCSQEAAAPAAAPTAQKAPAAPVNAENRSHDESSYAEPDKVVVKDIALDLKLDFDQKQIGGTATYTLEWKQKDAKQLVLDTRELSIAKVEAIAADGARSPLQFVLAPVDKVFGSKLTIETPDQPAKVEVTYHTAPTASGLQWLAPSMTEGKKLPFMFSQSQAIHARSWVPLQDTPSVRFTYSAHVVSRPDVMVLMSADNDPKAARDGDYTFKMPQPIPSYLLAIAAGDLVFEPISGRSGVWAEPTMVNKAAKEFEDTEKMIGAAEKLYGEYRWGRYDMLVLPPSFPFGGMENPRLTFATPTVIVGDKSLVSLVAHELAHSWSGNLVTNASWKDIWLNEGFTTYVQGRITEALYGKEMAEMEKQIDQTDLLAEVKDMSPADQALALPPLNERDPDEALSQVAYVKGSWFLEFLEQRFGRETFDPFLRGWFDDHAFQSANTDQFVEYLKKNLLPKNPSAVTEAELKAWLDEPGIPAFAAKAQSRNFSSVDTARIAFASAGTVPSSQVIAEWSTQEWVRFIDGLGATQPLDKLATLDKAFHFTGTPNGEIAMRWYPLTIRSGYEQANEAAAAFIERVGRRKLILPIYAELVKTPKGLELAKQAFEKAKPGYHPITTASVQDMLAKAEAK
>NZ_CP049368.1|WP_025877269.1|3883403_3884165_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSESPYKSGTTHFGFRDVDAKDKQKLVGQVFTSVARNYDLMNDLMSMGVHRAWKRYYVATAQVKPGDRVLDLAGGTGDIAALLKERVGAEGSVVLGDINAGMLSVGRDRLTNRGLVLGLDYVQCNAEALPFPDNSFDLVTIAFGLRNVTDKDAGLREMFRVLKVGGQARVLEFSEVTADWFKPIYDFHSFKILPKLGKLFANDSDSYQYLAESIRKHPPQEELKAMMGQAGFERCHYKNLTGGIVSIHSGYKL
>NZ_CP049368.1|WP_005411083.1|3884244_3884697_+|nucleoside-deaminase
MITTPDYQALLQTAIAEARQGLAEGGVPIGAALYHNDGRLLGCGHNRRVQEGDPSVHGETDAFRKAGRQRRYQDTIMVTTLAPCWYCSGLVRQFNIGTVVVGESRTFQGGIDWLRENGVNVIDLDSQECVDLLGGFIAQHPEIWNEDIGE
>NZ_CP049368.1|WP_089238112.1|3884897_3885158_+|hypothetical-protein
MQAHAVRPPSDPALAAIWDRLQQQYALHQRSAPFWSAYQDMQQDLLLDHPRDLVRLCNAMAGMAERLGAVEHAQLLRHRHAGCTSR
>NZ_CP049368.1|WP_089236961.1|3885233_3885560_+|hypothetical-protein
MHAEVPAIPPVINVDAELDYWRRQHADGALAHTSFGTYVPWIKFACDSLITQPRASNAQRDELFQTQYALQIMPRLTEAQAREFVERCWQHVYLASPVRSQEAPRLRA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

590157 : 599094

Enterobacteria_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165376202.1\|590157_591213_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.8e-78	45.9
WP_165376203.1\|591227_592115_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.8e-97	58.9
WP_165376204.1\|592111_592669_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.7e-45	51.1
WP_165376205.1\|592665_593559_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	1.1e-27	35.8
WP_165376206.1\|593611_595015_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.9e-47	28.9
WP_165376207.1\|595029_596376_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	3.5e-30	26.8
WP_165376208.1\|596472_599094_-	DEAD/DEAH box helicase	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	6.1e-47	30.4

DBSCAN-SWA_2

962263 : 1032555

Escherichia_phage(16.67%)

integrase,tail,protease,plate

attL 1013746:1013765|attR 1033601:1033620

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089239110.1\|962263_963553_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.9e-134	57.4
WP_108265118.1\|963695_966149_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.7e-214	50.9
WP_004146343.1\|966367_966640_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	7.7e-22	61.8
WP_165376379.1\|967363_969319_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_165376380.1\|969679_970882_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_165376381.1\|970878_971643_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_165376382.1\|971654_972299_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_025878155.1\|972311_972764_+	ribonuclease HI	J9Q745	Salmonella_phage	6.6e-42	52.1
WP_025878156.1\|972768_973497_+	DNA polymerase III subunit epsilon	A2I2Z6	Vibrio_virus	2.6e-08	30.0
WP_165376383.1\|973597_974302_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_049468383.1\|974915_975320_+	hypothetical protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	5.0e-17	35.3
WP_099819185.1\|975438_976485_-	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_089239126.1\|976505_977255_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
WP_165376384.1\|977254_978022_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_165376385.1\|978018_978408_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_032977375.1\|978882_979200_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_165376386.1\|979568_988826_+	transporter	NA	NA	NA	NA
WP_165376387.1\|988881_989325_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_165376388.1\|989388_990243_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA
WP_165376389.1\|990991_993070_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.8e-47	41.4
WP_025879376.1\|993076_993397_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_089239142.1\|993508_994108_+	recombination protein RecR	NA	NA	NA	NA
WP_089239144.1\|994172_994532_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_100551691.1\|994610_995138_-	hypothetical protein	NA	NA	NA	NA
WP_165376390.1\|995134_997084_-	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_165376391.1\|997076_998021_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_165376392.1\|998023_998977_-	MoxR family ATPase	NA	NA	NA	NA
WP_165376393.1\|999021_1000863_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_165376394.1\|1000892_1001465_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_088101178.1\|1001578_1002088_+	hypothetical protein	NA	NA	NA	NA
WP_025879386.1\|1002195_1002390_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_165376395.1\|1002481_1003459_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_100463422.1\|1003532_1004315_+	serine/threonine protein phosphatase	NA	NA	NA	NA
WP_165376396.1\|1004463_1005408_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_165376397.1\|1005490_1006234_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	3.4e-11	31.0
WP_025874077.1\|1006387_1006627_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	2.9e-09	43.2
WP_165376398.1\|1006772_1008035_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_165376399.1\|1008127_1009492_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_165376400.1\|1009636_1010698_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_165376401.1\|1010694_1011360_+	dTMP kinase	W8D0J5	Erwinia_phage	1.2e-20	35.3
WP_165376402.1\|1011356_1012313_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_089239172.1\|1012309_1012663_+	pilus assembly protein PilZ	NA	NA	NA	NA
WP_165376403.1\|1012926_1013160_-	hypothetical protein	NA	NA	NA	NA
WP_165376404.1\|1013296_1013677_+	tautomerase family protein	NA	NA	NA	NA
1013746:1013765	attL	NA	NA	NA	NA
WP_165376405.1\|1013759_1014833_-	phage late control D family protein	D5LGY1	Escherichia_phage	4.5e-97	53.7
WP_089239180.1\|1014823_1015039_-\|tail	phage tail protein	A2I2Y3	Vibrio_virus	2.5e-07	40.6
WP_165376406.1\|1015022_1015490_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	8.9e-18	36.1
WP_165376407.1\|1015492_1017946_-\|tail	phage tail tape measure protein	K4ICR4	Acidithiobacillus_phage	4.4e-15	23.6
WP_089239186.1\|1018066_1018357_-\|tail	phage tail assembly protein	A0A1W6JT47	Escherichia_phage	6.5e-19	59.0
WP_093817501.1\|1018440_1018944_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	7.6e-39	48.8
WP_165376408.1\|1018946_1020149_-\|tail	phage tail protein	A0A088FVH5	Escherichia_phage	3.0e-126	53.8
WP_165376409.1\|1020255_1020915_-	hypothetical protein	NA	NA	NA	NA
WP_165376410.1\|1020916_1022956_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	3.1e-99	37.4
WP_165376411.1\|1022963_1023743_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.5e-46	52.3
WP_165376412.1\|1023735_1024632_-\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	6.0e-79	55.5
WP_089239202.1\|1024634_1024973_-\|plate	phage baseplate protein	A0A193GYY8	Enterobacter_phage	7.8e-32	61.3
WP_165376413.1\|1025025_1025616_-\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	1.3e-26	39.3
WP_165376414.1\|1025612_1026167_-	hypothetical protein	NA	NA	NA	NA
WP_165376415.1\|1026286_1026565_-	hypothetical protein	NA	NA	NA	NA
WP_165376416.1\|1026539_1026917_-	hypothetical protein	NA	NA	NA	NA
WP_165376417.1\|1026913_1027399_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	8.6e-40	55.0
WP_089239212.1\|1027395_1027746_-	hypothetical protein	NA	NA	NA	NA
WP_165376418.1\|1027742_1028192_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_165376419.1\|1028531_1028915_-	hypothetical protein	NA	NA	NA	NA
WP_165376420.1\|1029084_1029621_-	hypothetical protein	NA	NA	NA	NA
WP_165376421.1\|1029662_1029890_-	hypothetical protein	NA	NA	NA	NA
WP_165376422.1\|1030236_1032555_-\|integrase	integrase	V5YUR8	Pseudomonas_phage	3.1e-135	42.1
1033601:1033620	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2209739 : 2222570

Stenotrophomonas_phage(50.0%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165377113.1\|2209739_2210135_-	hypothetical protein	S0F2J2	Stenotrophomonas_phage	1.2e-31	54.6
WP_165377114.1\|2210274_2210442_+	hypothetical protein	NA	NA	NA	NA
WP_165377115.1\|2210547_2211597_+	replication initiation protein	A0A077JDC0	Xanthomonas_phage	7.6e-142	70.3
WP_165377116.1\|2211593_2211884_+	DNA-binding protein	O80282	Xanthomonas_phage	2.1e-25	62.5
WP_165377117.1\|2212009_2212213_+	hypothetical protein	NA	NA	NA	NA
WP_165377118.1\|2212209_2212461_+	hypothetical protein	NA	NA	NA	NA
WP_165377119.1\|2212587_2214132_+\|coat	A coat protein	A0A077JDC5	Xanthomonas_phage	6.7e-62	45.8
WP_006445348.1\|2214137_2214452_+	DUF2523 domain-containing protein	A0A077JCZ2	Xanthomonas_phage	9.5e-24	60.2
WP_165377120.1\|2214448_2215645_+	zonular occludens toxin	A0A077JGB2	Xanthomonas_phage	4.5e-122	59.0
WP_165377121.1\|2215654_2215987_-	hypothetical protein	NA	NA	NA	NA
WP_165377122.1\|2216055_2216418_-	hypothetical protein	B1NI82	Stenotrophomonas_phage	4.3e-44	77.6
WP_165378587.1\|2216625_2216994_+	hypothetical protein	A0A077JDD0	Xanthomonas_phage	1.5e-28	50.4
WP_165377123.1\|2217030_2217630_-	hypothetical protein	NA	NA	NA	NA
WP_165377124.1\|2218204_2219413_-	hypothetical protein	B1NI81	Stenotrophomonas_phage	4.5e-37	30.7
WP_154880323.1\|2219409_2219694_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_165375838.1\|2219693_2220743_-	hypothetical protein	Q4LAU2	Stenotrophomonas_phage	3.1e-18	73.2
WP_165377125.1\|2220809_2220947_-	hypothetical protein	NA	NA	NA	NA
WP_165377126.1\|2221157_2221460_-	single-stranded DNA-binding protein	B1NI78	Stenotrophomonas_phage	6.5e-46	96.9
WP_165377127.1\|2221463_2222570_-	replication protein	S0F3I3	Stenotrophomonas_phage	1.1e-199	90.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049368

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection