CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048751	Brevundimonas mediterranea strain D151-2-6 chromosome, complete genome	2 crisprs	csa3,WYL,DinG,DEDDh	0	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048751_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048751_1

903433-903511

Orphan

Consensus_repeat	Method
GAGCGCCGCGCGCGAGGCGATAGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048751_1

>merge|NZ_CP048751|1|903433-903511|CRISPRCasFinder
GAGCGCCGCGCGCGAGGCGATAGGCCCCAAAACGAAGATGGCCTCAAGCAGCAGAGCGCCGCGCGCGATGCGATAGGCC

>NZ_CP048751|1|1|903433-903511|CRISPRCasFinder
GAGCGCCGCGCGCGAGGCGATAGGCC	CCAAAACGAAGATGGCCTCAAGCAGCA
GAGCGCCGCGCGCGATGCGATAGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048751.1\|WP_008259992.1\|902070_902739_-\|LPS-export-ABC-transporter-periplasmic-protein-LptC	unknown	unknown	gnl\|CDD\|227667
NZ_CP048751.1\|WP_008260210.1\|897788_898427_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NZ_CP048751.1\|WP_008260623.1\|906556_907357_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP048751.1\|WP_008261787.1\|911247_911610_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048751.1\|WP_040349932.1\|898489_899992_-\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NZ_CP048751.1\|WP_008260703.1\|896938_897190_+\|DUF1150-domain-containing-protein	unknown	unknown	gnl\|CDD\|369004
NZ_CP048751.1\|WP_008262589.1\|895023_896340_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP048751.1\|WP_008262903.1\|900721_901516_-\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224060
NZ_CP048751.1\|WP_008260176.1\|906092_906368_+\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|274610
NZ_CP048751.1\|WP_008262263.1\|897235_897703_-\|PTS-IIA-like-nitrogen-regulatory-protein-PtsN	unknown	unknown	gnl\|CDD\|162350
NZ_CP048751.1\|WP_008263186.1\|905545_905953_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|235667
NZ_CP048751.1\|WP_008263548.1\|907470_907749_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP048751.1\|WP_040349248.1\|907785_910644_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP048751.1\|WP_008260227.1\|896453_896876_+\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|107227
NZ_CP048751.1\|WP_008261131.1\|902746_903361_-\|ribonuclease-D	unknown	unknown	gnl\|CDD\|223426
NZ_CP048751.1\|WP_008262620.1\|904796_905099_-\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|179101
NZ_CP048751.1\|WP_008260146.1\|910762_911149_+\|DUF983-domain-containing-protein	unknown	unknown	gnl\|CDD\|227652
NZ_CP048751.1\|WP_008261179.1\|905109_905496_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_CP048751.1\|WP_040349931.1\|901555_902065_-\|organic-solvent-tolerance-protein-OstA	unknown	unknown	gnl\|CDD\|224845
NZ_CP048751.1\|WP_008261429.1\|903859_904771_+\|WecB/TagA/CpsF-family-glycosyltransferase	unknown	unknown	gnl\|CDD\|224833

Protein	Function_ID	Function_description	E-value
NZ_CP048751.1\|WP_008259992.1\|902070_902739_-\|LPS-export-ABC-transporter-periplasmic-protein-LptC	gnl\|CDD\|227667	COG5375, COG5375, Uncharacterized protein conserved in bacteria [Function unknown].	4.50373e-30
NZ_CP048751.1\|WP_008260210.1\|897788_898427_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.62369e-22
NZ_CP048751.1\|WP_008260623.1\|906556_907357_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	1.98117e-111
NZ_CP048751.1\|WP_040349932.1\|898489_899992_-\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	0
NZ_CP048751.1\|WP_008260703.1\|896938_897190_+\|DUF1150-domain-containing-protein	gnl\|CDD\|369004	pfam06620, DUF1150, Protein of unknown function (DUF1150). This family consists of several hypothetical bacterial proteins of unknown function.	1.06518e-25
NZ_CP048751.1\|WP_008262589.1\|895023_896340_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	4.89938e-153
NZ_CP048751.1\|WP_008262903.1\|900721_901516_-\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224060	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only].	5.32545e-143
NZ_CP048751.1\|WP_008260176.1\|906092_906368_+\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|274610	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.	2.26881e-05
NZ_CP048751.1\|WP_008262263.1\|897235_897703_-\|PTS-IIA-like-nitrogen-regulatory-protein-PtsN	gnl\|CDD\|162350	TIGR01419, nitro_reg_IIA, PTS IIA-like nitrogen-regulatory protein PtsN. This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS].	7.5855e-42
NZ_CP048751.1\|WP_008263186.1\|905545_905953_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|235667	PRK06004, flgB, flagellar basal body rod protein FlgB; Reviewed.	4.91745e-48
NZ_CP048751.1\|WP_008263548.1\|907470_907749_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.62521e-32
NZ_CP048751.1\|WP_040349248.1\|907785_910644_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	7.99439e-07
NZ_CP048751.1\|WP_008260227.1\|896453_896876_+\|Hsp20-family-protein	gnl\|CDD\|107227	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 600-kDa structures. This elevated activity seen under heat shock conditions is retained for an extended period of time after the temperature is returned to normal. IbpA also forms multimers.	1.53289e-37
NZ_CP048751.1\|WP_008261131.1\|902746_903361_-\|ribonuclease-D	gnl\|CDD\|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	3.78998e-76
NZ_CP048751.1\|WP_008262620.1\|904796_905099_-\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|179101	PRK00732, fliE, flagellar hook-basal body complex protein FliE.	2.84588e-24
NZ_CP048751.1\|WP_008260146.1\|910762_911149_+\|DUF983-domain-containing-protein	gnl\|CDD\|227652	COG5349, COG5349, Uncharacterized protein conserved in bacteria [Function unknown].	1.96338e-40
NZ_CP048751.1\|WP_008261179.1\|905109_905496_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	2.15827e-59
NZ_CP048751.1\|WP_040349931.1\|901555_902065_-\|organic-solvent-tolerance-protein-OstA	gnl\|CDD\|224845	COG1934, COG1934, Uncharacterized protein conserved in bacteria [Function unknown].	1.71717e-22
NZ_CP048751.1\|WP_008261429.1\|903859_904771_+\|WecB/TagA/CpsF-family-glycosyltransferase	gnl\|CDD\|224833	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane].	7.57194e-68

>NZ_CP048751.1|WP_008261131.1|902746_903361_-|ribonuclease-D
MTVYLHEGDLPDDLDLGPDVAIDSETMGLRFRRDPLCVVQLSAGDGNAHVVRLNRPGYDCPNLKRLLTDPAVTKIFHFGRFDIGMFLLHLGVETRPVYCTKIASKLARTYTDRHGLKDVVRETVGVDLSKAQQSSDWGAAELTQAQLDYAASDVLYLHAARAKLDLMLAREGRAELAAQCFDFLPTRSALDLAGWDEIDIFAHS
>NZ_CP048751.1|WP_008259992.1|902070_902739_-|LPS-export-ABC-transporter-periplasmic-protein-LptC
MTDPGEQTRIQADAADEARVVLAGARWRARSRRVKLYRRVLPIIILVLAGGVLTWTVFRTVMSGVERKASQGQEVRLDKPLFHGQDAQGRAFTVGAQGAIRDPATGHFRLVGPALKLNLGGRKVTEMTADGGTYNEQARTVTIGPNVRISDGGSGFVLTTPEAVVDTSTGIITGSRGVQGAGPIGTINASSYAIYDQGERVVFKGSGDTKISGTINPSGSGE
>NZ_CP048751.1|WP_040349931.1|901555_902065_-|organic-solvent-tolerance-protein-OstA
MTAKTHYARTVAALAALALLALPAVGDAQSARTSSNQPIAFGADTGEQSAERISLRGRAEVTQGQNRLRAEAITLFRNAAGDPERVEATGTVYFVTPTQSMRGDRAVYTLSNGELVVTGNVILNQGKNVLTGGRLVYNVNTDAANMSGAPRGGTAGSRIQGVFYPNGTN
>NZ_CP048751.1|WP_008262903.1|900721_901516_-|LPS-export-ABC-transporter-ATP-binding-protein
MARKELSALNLSDRPAATPEPAVSAAEKGLRVRNIARAFGQRQVVSDVSLTVQRGEVAGLLGPNGAGKTTCFYMITGLIPPDSGTIWLDGEDITSQPMYQRSRMGLGYLAQEASIFRGMTVEQNIMAVVELNYPRDQLQAETDRLLNELHIDHLRHAPATGLSGGERRRVEIARALAGRPSFILLDEPFAGIDPLAIADIRSVIRYLADQGIGVLITDHNVRETLDITDRVSIISGGSVLFEGTAEEAVNDAEVRRVYLGENYA
>NZ_CP048751.1|WP_040349932.1|898489_899992_-|RNA-polymerase-factor-sigma-54
MIGQRLEIRQGQGLVITPQLQQAIKLLQLSNLELEEFVEAELERNPLLQRDEPEGDGPEAPVSVSDAAPDGEMSFGDGVGQDSVASMDAGSDDVYGDAAPGERTSDRMTDEAQPGLSDWSSAGKGGQVFEGDGERPDAHELTLWEHLQAQASSAGLSAADHAIALTLIDATDEGGYLRGEMAEFADRLGVSLDRIEAVVAVCQGFEPTGIMARSVPECLKLQLIERNRFDPAMGALLDHLDLLARRDLAGLKKICGVDGEDLAEMIAELKALTPRPGAGFGGEPAQTVVPDVHVRPDPAGGWRVELNADTLPRLLIDKRYHGLVQAGARSDTEKTFVAECAAQASWLVKSLDQRAKTILKVSSEIVRQQDAFLAFGVEFLRPLNLKTVADAIGMHESTVSRVTSNKYVSTPRGVFELKFFFTAAIQSVDGASTHSAEAVRHRIKTMIDGEGVGGDVLSDDRIVEILKEAGIDIARRTVAKYREALRIPSSVERRRMLKTG
>NZ_CP048751.1|WP_008260210.1|897788_898427_-|ribosome-associated-translation-inhibitor-RaiA
MQVQVSGKQVDVGEALGSRISQELEDGVGKYFARGGEDAEVVVSKDGHNFKVDCWVRLASGQTLVTTGMGGDAHSAFTEALDRLEKRVRRYKRRLKDHHIGPKGLSPEKTENAAREVARSIVLRDPDSVEDDVFGDTGENDGPPPVGMVIAETEHEIRSITVGRAVLELDMTGYPVVLFRNAAHGGLSVVYRRPDGNVGWIDPERTKKSNGH
>NZ_CP048751.1|WP_008262263.1|897235_897703_-|PTS-IIA-like-nitrogen-regulatory-protein-PtsN
MDIADLLAPNGVVLRGGASSKRQALHAVAEAAAQALGVDQGRIFEALLEREALGSTGLGSGVAVPHARLKEIDRVTAVFVRLDTPVAYEAVDDRPVDLLLALFAPPKDGAEHLRALAAVSRALRSPELREQLRQARTVDAIKALFVKDQAPATAA
>NZ_CP048751.1|WP_008260703.1|896938_897190_+|DUF1150-domain-containing-protein
MTPMMMTKEDFAGLGAPDLVYVREVKASDLLEEAVEMKDIAFDPNQSLYAVHSADGERLAVMLDRDTAFAAAVAHELEPVSVH
>NZ_CP048751.1|WP_008260227.1|896453_896876_+|Hsp20-family-protein
MTTTRTILFDSPFLLGFDHTRALIDRAAKAAAESYPPYNVEQIGEAGVRISLAVAGFAPDELAITLEGRQLTIAGKRDDAGKSEQAFLHRGIAARGFVRSFVLADGLEIEGARLEHGLLHVDLIRPEAERQVRRIPITAG
>NZ_CP048751.1|WP_008262589.1|895023_896340_+|ammonium-transporter
MTRHAALSAIAVAGAASLASPALAAAPALLAHQAPLVIDNAATAWILTSTALVLLMTLPGLALFYGGMVRKKNIISVIAQSAAAFAIVSVLWFLVGYSLSFGKGPDAVNGLIGGVQAAFLNGVTMETAHSLLPGLPELLFVSFQMTFAIITPALIAGAFAERMKFSASLLFFALWHLIVYAPICHQVWGGGYLGSLGVLDFAGGAVVHVNAGVAGLVCALVLGPRHGFGRDNMAPANLVYSAIGTGLLLVGWIGFNAGSAGAADALAATAAFNTILAAAAAALGWMTVEWFDRKRPTLLGLLSGVVGGLVAITPAAGFVDPKGAFFIGLIAGPACYAGAVWLKHALKYDDSLDAFGVHGIGGIVGALLTGVFATTSINALSEGATVWKQALGLGGAIVWSAVGTFVVLMICKFTTGLRVTKDEEVEGLDYTQHGEAIH
>NZ_CP048751.1|WP_008261429.1|903859_904771_+|WecB/TagA/CpsF-family-glycosyltransferase
MADPSRVPKAHERRTTPRATYRKRRRRRERVHMFGQLVDLVKPEEVLHHVQDAVAEGRKSVVANHNLHSLYLLQKHPEMRAFYDMAELVEVDSTPMIWFSRALGLHSRGFHRCTYLDWRDHFWSVANRKAWRVMAVGGAPGVGEEAARRLGARYPKTEIRTRHGFFDARAGSADNAEVVAEIQAFQPHILFVGMGMPRQELWTLAVFDALPDCVILSVGAAFDYEAGTQNPAPRWMGRAGIEWAYRLAQDPRRLFHRYCIEPWTLAPLAIRDLRAARRRMSGKTAARGADFGAPPTRNFPHGT
>NZ_CP048751.1|WP_008262620.1|904796_905099_-|flagellar-hook-basal-body-complex-protein-FliE
MNPMMAARAYAAVQGSAMPTAAQPPASGDNGFADLVKNAMTDMTQQSRAAETQMTQSIQGNGNLIDVVTALSSAEASLETVMSVRDQVISAYKEIMAMPI
>NZ_CP048751.1|WP_008261179.1|905109_905496_-|flagellar-basal-body-rod-protein-FlgC
MAVAASALKAQQSRMRVIAENIANAQSTARTPGGEPYRRQIPVFQAREVDGATGVTLAEVRPDQGEFKMDYDPSHPAANAQGYVMRPNVDTLVEAMDMREAQRAYEANLNVIETARSMDSRTLDIIKR
>NZ_CP048751.1|WP_008263186.1|905545_905953_-|flagellar-basal-body-rod-protein-FlgB
MGVADIPLLGQIKGRLGWLDERQRVIAENVANADTPGYGGRDLKQPTDFAAALRSGGGLQVVRTNRAHIAPPVSAPRFDPTKSPDSETTLDGNSVVVEEQMLKMAESRMAYDAAIGFYQKSMSMLRMAARKPGAG
>NZ_CP048751.1|WP_008260176.1|906092_906368_+|flagellar-biosynthetic-protein-FliO
MNFLDLARAVFGLAFTLGLIGLAAYAARRYAPQLMAKLNAQRGERRMQVVETLVLDPARRLVLVRIDAEERLILLGEGRELIEPRQPEIFK
>NZ_CP048751.1|WP_008260623.1|906556_907357_+|flagellar-type-III-secretion-system-pore-protein-FliP
MFAVPAASELKRAALLSLFTTLVCLAWPLAAFAQDAAAGGSAINIDLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGMQQSPPNAVLVSLALFLSAIVMAPTWQDAYDSGIRPLLDQQMELPQAFDAASEPVKTFMLAQVDRGDLALFTRLSRVEAPANLQELPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESFQRASGTG
>NZ_CP048751.1|WP_008263548.1|907470_907749_+|HU-family-DNA-binding-protein
MTTQAELIAAVAKDAGVSQADAGKVLTAIVENIHASLKAGGDVRISNLGVFDTAARAEREGRNPATGATIKIAASKAVRFRVSKPLKDAVNG
>NZ_CP048751.1|WP_040349248.1|907785_910644_-|tetratricopeptide-repeat-protein
MSGTPHSKRILKSTVAAAAAGAVVFAPLAPLAQEAGRSRDPLSISIGQSSEFTRVEFGGVIGARSQVRREGDKVIVRLGVSAAPDVSRLRVDPPEGVKAVETRLARGGTTDLVITLAEGADARSGAADGAVWLNLYAPGKAPEPTSEERAAAINSVVPVRAVSTPDKTVLTFQWGAPVGAAVFRRGEAVWVVFDTAAKMDLTGAKALGPAKDARWAAGPDYTAVRIAAPDGLPVAAEGQGGTWTVTIGGPPAGASGVEIDRSDDGSATLVARMAGATKTVWLTDPLVGDRFAAVTALAPGKGFSGTRSTVDLSLIPTAQGLAVETTTDDLKIEAAGDLVTLSRPQGLTLSPPSATLEAAAHEDDAPKPAAYPALILEEWATAGEDGFSQRYRRLQDAAAQETIAGTDNPRAPIAARMALARFLVGSGLNYEAIGVINALVAKAPNMQGEPEVRGLRGAARVGVGRLEEAQADFAGSALSNDPAAKVWQGYIAAEQGDWEGARRAFAAGASVIDDFPKEWRARFGAAHALAAIQTNDLPAARQLLAYVFSQNASAADQLTARVVQARLFELSGDKDRALAVYKAVARAPLDGIATPAKLGAIGLELDKGVLTPDQAAQQLEQLKWRWRGDATELAVIRKLANLYLQQGRYREALDALRGAGKRMSGVPGAAEIYADQSNAFRALFLEGAADGLQPVQALALFYDFRELTPIGADGDEMVRRLSRRLIDVDLLDQAAELLKHQVDERLDGVAKAQVATDLATVYLMDRQPEKALQAIWGSRTTLLPNAINSERRALEARALMDLGRYDHALEVLDRDQSAPAREVRGDILWKQQKWAEAAPLYEARLGDRYKQAEAPLTPSEESWLIRAGVGYSLSGNPAALDRLRGQYSPFIPRARSANAIRVALDDNLAGLAGVNDFAALSANADTFVGWVNAAKQDFRKETGGNRPATPAR
>NZ_CP048751.1|WP_008260146.1|910762_911149_+|DUF983-domain-containing-protein
MTDYPRLSTLKTGLACRCPRCGEGALFKGYLTLRESCPKCGLNYGFADPADGPAFFVMTAVGLVGMILLMVFDFSVKPPIWVHAVVTLPILVIMCLGCLRPFKAWLVAEQFIHKAAPPEFSSNGKHGD
>NZ_CP048751.1|WP_008261787.1|911247_911610_-|hypothetical-protein
MIRIALIAAAALLAAACTPQTTGAGSDAPMQSADASACATRGGTMKQVGRMQSWQCVISYADAGKSCTDGDQCQGDCRVEGNSGIAPGAATTGVCQADSDRFGCNTPVEDGKAGPTLCID

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Crispr_ID: NZ_CP048751_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048751_2

2269250-2269448

Orphan

Consensus_repeat	Method
TCGGCGTCGCCGGAGCCGGCGATGTCGA	CRISPRCasFinder
CGTCGCCGGAGCCGGCGATGTCG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP048751_2

>merge|NZ_CP048751|2|2269250-2269448|CRISPRCasFinder,PILER-CR
TAGACGTCGCCGGAGCCGGCGATTTCGCTGGTCAGCTTGGCGGGGCGGGTCGCCAGGCTGACGTCGCCGGAGCCCGCGATGCTGACCTGGACGTCGCCGGTGGGGGCGATGTCGGCGTCGCCGGAGCCGGCGATGTCGACCTTGGCGTCCTTGGCGTCCAGAGCTCGAAGATCGGCGTCGCCCGAGCCGGCGATGTCGA

>NZ_CP048751|2|2|2269250-2269448|CRISPRCasFinder
TAGACGTCGCCGGAGCCGGCGATTTCGC	TGGTCAGCTTGGCGGGGCGGGTCGCCAGG
CTGACGTCGCCGGAGCCCGCGATGCTGA	CCTGGACGTCGCCGGTGGGGGCGATG
TCGGCGTCGCCGGAGCCGGCGATGTCGA	CCTTGGCGTCCTTGGCGTCCAGAGCTCGAAGA
TCGGCGTCGCCCGAGCCGGCGATGTCGA

>NZ_CP048751|2|1|2269254-2269447|PILER-CR
CGTCGCCGGAGCCGGCGATTTCG	CTGGTCAGCTTGGCGGGGCGGGTCGCCAGGCTGA
CGTCGCCGGAGCCCGCGATGCTG	ACCTGGACGTCGCCGGTGGGGGCGATGTCGGCGT
CGCCGGAGCCGGCGATGTCGACC	TTGGCGTCCTTGGCGTCCAGAGCTCGAAGATCGGCGT
CGCCCGAGCCGGCGATGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048751.1\|WP_040349749.1\|2267478_2268510_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|183808
NZ_CP048751.1\|WP_008263478.1\|2275263_2275812_+\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|235341
NZ_CP048751.1\|WP_008262077.1\|2260200_2261838_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|236050
NZ_CP048751.1\|WP_008262962.1\|2277406_2277865_+\|DUF983-domain-containing-protein	unknown	unknown	gnl\|CDD\|227652
NZ_CP048751.1\|WP_040350181.1\|2275816_2276236_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240035
NZ_CP048751.1\|WP_040349745.1\|2274124_2275093_+\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293
NZ_CP048751.1\|WP_008258689.1\|2265700_2266633_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP048751.1\|WP_154726541.1\|2271280_2272327_+\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|214438
NZ_CP048751.1\|WP_008260526.1\|2261941_2262796_-\|metalloprotease	unknown	unknown	gnl\|CDD\|282131
NZ_CP048751.1\|WP_008261069.1\|2270018_2270624_-\|DUF1700-domain-containing-protein	unknown	unknown	gnl\|CDD\|227053
NZ_CP048751.1\|WP_040349750.1\|2266633_2267467_-\|DUF3298-and-DUF4163-domain-containing-protein	unknown	unknown	gnl\|CDD\|378702
NZ_CP048751.1\|WP_008261146.1\|2275096_2275267_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048751.1\|WP_008262802.1\|2263963_2264932_-\|fatty-acid-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225779
NZ_CP048751.1\|WP_035310980.1\|2265059_2265467_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048751.1\|WP_008261972.1\|2270620_2271007_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP048751.1\|WP_008264375.1\|2263316_2263967_-\|methyltransferase	unknown	unknown	gnl\|CDD\|226413
NZ_CP048751.1\|WP_050771726.1\|2262862_2263261_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048751.1\|WP_008260260.1\|2276501_2277410_+\|cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|238834
NZ_CP048751.1\|WP_008264044.1\|2265463_2265661_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_CP048751.1\|WP_008263055.1\|2272342_2274022_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833

Protein	Function_ID	Function_description	E-value
NZ_CP048751.1\|WP_040349749.1\|2267478_2268510_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|183808	PRK12878, ubiA, 4-hydroxybenzoate octaprenyltransferase.	4.81885e-116
NZ_CP048751.1\|WP_008262962.1\|2277406_2277865_+\|DUF983-domain-containing-protein	gnl\|CDD\|227652	COG5349, COG5349, Uncharacterized protein conserved in bacteria [Function unknown].	1.57119e-46
NZ_CP048751.1\|WP_008262077.1\|2260200_2261838_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0
NZ_CP048751.1\|WP_040350181.1\|2275816_2276236_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240035	cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	9.46173e-57
NZ_CP048751.1\|WP_040349745.1\|2274124_2275093_+\|protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	2.47304e-126
NZ_CP048751.1\|WP_008258689.1\|2265700_2266633_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.38221e-20
NZ_CP048751.1\|WP_040349750.1\|2266633_2267467_-\|DUF3298-and-DUF4163-domain-containing-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	3.84897e-06
NZ_CP048751.1\|WP_008260526.1\|2261941_2262796_-\|metalloprotease	gnl\|CDD\|282131	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase. Members of this family have a predicted zinc binding motif characteristic of neutral zinc metallopeptidases (Prosite:PDOC00129).	1.42353e-103
NZ_CP048751.1\|WP_008261972.1\|2270620_2271007_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.94592e-25
NZ_CP048751.1\|WP_154726541.1\|2271280_2272327_+\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|214438	MTH00154, COX2, cytochrome c oxidase subunit II; Provisional.	3.81549e-78
NZ_CP048751.1\|WP_008263478.1\|2275263_2275812_+\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|235341	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional.	9.89393e-74
NZ_CP048751.1\|WP_008262802.1\|2263963_2264932_-\|fatty-acid-desaturase-family-protein	gnl\|CDD\|225779	COG3239, DesA, Fatty acid desaturase [Lipid metabolism].	3.8085e-41
NZ_CP048751.1\|WP_008264375.1\|2263316_2263967_-\|methyltransferase	gnl\|CDD\|226413	COG3897, COG3897, Predicted methyltransferase [General function prediction only].	2.627e-84
NZ_CP048751.1\|WP_008261069.1\|2270018_2270624_-\|DUF1700-domain-containing-protein	gnl\|CDD\|227053	COG4709, COG4709, Predicted membrane protein [Function unknown].	1.01697e-45
NZ_CP048751.1\|WP_008260260.1\|2276501_2277410_+\|cytochrome-c-oxidase-subunit-3	gnl\|CDD\|238834	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.	1.44644e-103
NZ_CP048751.1\|WP_008264044.1\|2265463_2265661_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	1.59312e-24
NZ_CP048751.1\|WP_008263055.1\|2272342_2274022_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0

>NZ_CP048751.1|WP_040349749.1|2267478_2268510_-|4-hydroxybenzoate-octaprenyltransferase
MTSAPLPDAGANWVDRHAPQRLKPWLKLGRFDRPIGIWLLLLPGWQGIVLALAQYRQAPGLYDLWLFVGFGIGACLMRAAGCAFNDIVDRDFDAQVARTALRPIPAGLISVKQAWAFVIGCSLISLLILLTLPVVAIALGVGSLALVAAYPFMKRITWWPQAWLGLTFNWGALMGFAAALPLAAAALLLPAEIAGEFRPFLWSAPSDSGHAVALVWQAYVPAVLLYLGGVFWTLGYDTIYALQDIEDDAMVGVKSSARRLASAVRPGVAVFYVISLVMAASAGLAAGLGPLFWLGLALYAAHLTRQVLRLDRTDGALALKLFKSNREAGFILLAALALGSLGL
>NZ_CP048751.1|WP_040349750.1|2266633_2267467_-|DUF3298-and-DUF4163-domain-containing-protein
MTSTVRILLLSAAVAATLAACQRREDKADASAPTPTAAAPVSPAAAGAPMGFDSKTQYATVKLTLPDAVKSKPDLHAPLYAAAVRDLRQFSEGAQADLSEAGGGPGGYEKTIAFEPGAETGKLFSLARTDFEFTGGAHPNTSFSAVLWDKAMKKRLGFADLFRPGADLAGLDKALCDAANAAKQARSPGSETATLGGKMWTCPKAVATPFVLTPGTTPGKAGGITFLLGAYQIGPYSDGPYQIALPQSVFRSLLNPAYADEFAGAPVKAGDVTPKNG
>NZ_CP048751.1|WP_008258689.1|2265700_2266633_+|alpha/beta-hydrolase
MFNAFFKARPRLRAALFGLAVCTPSLMVGVTAAFAQPGAQASAFVSDRLSVEVVGAGPDVILIPGFGCSREVWRTTADRLKATHRVHLVQLAGFAGEAWSHGDGPFVQPVVEELDRYIRSQGLERPAVIGHSMGALAGLVLAQQHPEAVGRLMSVDSLPFFGALRGPQVTVEAMRPAAEQTAQTLLALSDESFRAAQVGSAQGMTRDAALRVRLVDWTTGSDRKAMAAAMRDVLLTDARPGLANLSVPVTALYASDADGGAPAAQADQAWGHEYATLPGVKLIRVDGSRHFIMADQPQRFAELVDQFLAD
>NZ_CP048751.1|WP_008264044.1|2265463_2265661_+|helix-turn-helix-transcriptional-regulator
MKNRLKLLRVERGWTQEQLGQALGVSRQAVIALETERHDPSLDLAYRIAAAFDRPVEEIFENPHA
>NZ_CP048751.1|WP_035310980.1|2265059_2265467_+|hypothetical-protein
MLSFGKSTTPAHRRYVIRTMAFTIPYVAICVAMMTTDAFDEVMGKPAAWGLAAAVSGPVIGQIWAVLSLMRESDEFVRSLTAKQFIVASGLAMAVATFWGFGESFAGAPHIETWLIVPLFWGMYGISAPFIRTSR
>NZ_CP048751.1|WP_008262802.1|2263963_2264932_-|fatty-acid-desaturase-family-protein
MPAAPRLAASALFTPEEWAPFQARSAWVGPLLVAHCWAVIAIAVVAGVLIPWLIPLCVMVIGTRQLGLAILMHEAAHGGLSRNLRLNDFLGHWLCAVPIGASLTAYRPYHLAHHRFAQQPEDPDLMLSAPFPVSPASLRRKLIRDLTGQTFFKQRVLLPLAQRRSGSPKGDGAQTMRDSAHQYEAVVTGRSVLPFLAFNALLLAGFVAAGVWWAFFALWLLPMATWFPMVTRLRNIAEHACVDGSAADAFRAARTTRAAWWERAFIAPYWVNFHAEHHLFMHVPCWKLPALHRAVHTRPQAAGMEVAPGYADVLKTATRRRA
>NZ_CP048751.1|WP_008264375.1|2263316_2263967_-|methyltransferase
MTIPDPAAFIHANTRLQPVPHAPEISLWLADEITPIWRMTEEELGELGLPPPFWAFAWAGGQALSRYLLDHPQEVAGKRVLDFATGSGLVGVAAMRAGAASVLCADIDPFCQAAVAANAQANGVALGFTPLNLLDAPPPAVDVICAGDICYEKPMTEAVLAWLGQARAAGTRVLIGDPGRTYFPRSGLDFLAEYSVPTTRELEDLEIKRSSVWAMP
>NZ_CP048751.1|WP_050771726.1|2262862_2263261_-|hypothetical-protein
MRPIATFSVVIAAMASSAVAQTPPYVPPYAAPHGAYPGGGPAAIADQHRYENDRLRRQSEANAALARQQQIETRQRLMQIEAAREPTVSPAVPTRPLYDVAQERGLREGAAARRQQTRQGVTQIDDWLDRPN
>NZ_CP048751.1|WP_008260526.1|2261941_2262796_-|metalloprotease
MRWQGGRTGGGGVEDRRGLGGGALAGGGIGVGVLAIIGYLVFGIDPATTTQLASQFGGVGAEQQQGQVGTPEDQAGRFVDVVGGNINDVWTQKLNGYEPPKVVIYEQGTSTGCGYGQSAMGPFYCPTDRTVYLDLGFWQEMETQLGASGADFARAYVIAHEFGHHVQTLTGTSAQVRQAQQRAQGEAEANQYSVALELQADCYAGVWARNASAVSNGQVALEPGDIEEGMKTAQAIGDDTLQRRGGGRVSPESFTHGSAAQRVEWLQRGYQSGDPAVCDTFSGA
>NZ_CP048751.1|WP_008262077.1|2260200_2261838_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MHARAGRQALPEDLIDLDALIGAYGSGRPDMADPAQRVVFGTSGHRGSALDGAFTESHILAIAQAVAEYRAAQGIDGPLFVGRDTHGLSEPAWRTTLEVLVGNGVEVLIDARDGFTPTPAVSHAILAYNRANTRQADGILITPSHNPPRDGGIKYNPPSGGPAGSDATGAIAARANQLIEGGLAEVKRVPFDRAYATAGRFDFLGAYIDDLPSVLDLDAIRDAGVRMGADPLGGAAVAYWGEIADRHRLNLTVVNDVVDPRWAFMPLDADGKIRMDCSSPSAMANLIRMMQGGSAYDLAFGNDADADRHGIVTPDGGLMNPNHFLAAAVAYLFVNRPGWGPDVAVGKTLVSSSMIDRVVAGMGRRLLEVPVGFKHFVPGLLDGTVGFGGEESAGATFLRRDGTAWSTDKDGLLLCLLAAEIQARTGQSASQLYAGLTEQYGAPAYARIDAPADRTQKARLAALSSADVAATTLAGQPITDILTKAPGNGEAIGGLKVVTADAWFAARPSGTEDVYKIYAESFLGADHLAQVQAEARTLVAAALAG
>NZ_CP048751.1|WP_008261069.1|2270018_2270624_-|DUF1700-domain-containing-protein
MTRAEFIARLRSGLVGLPTATATDIVADYETHFADGLAAGRTEAEVAAALGDPGRLARELKAEAGIQRWRQEKNPSAAAAAVFAVLGLGAVDILILLPILMGVVGTLFGFFIAAIALFISGGGVMVAGPFAGFPGGPFAAVLMGLGLMAGAVFIGALLTIVTIWLVNGIVWFARLHYRLLKPALEPQSDAQSDATSTGGSL
>NZ_CP048751.1|WP_008261972.1|2270620_2271007_-|PadR-family-transcriptional-regulator
MTETIEIQLKKGVLGLCVLALLNRADSYAYEIASRLSDAIDMGEGTIYPLMRRMQSDGQVETYLVESSSGPSRKYYRLTDAGRTALAAQTAEWSAFTQAVDAVLASDANTIQASAPQAAEAQPEETEQ
>NZ_CP048751.1|WP_154726541.1|2271280_2272327_+|cytochrome-c-oxidase-subunit-II
MGMGTRALGRAKAGATAATTAVGIALFSAAPTWAQDLMGQPTPGGIDLQPAAAPLKHDAIWFHDIVLMPVITGITLLVLGLLAWIVFRYNKRSNPTPARWSHNTTVEIIWTVLPVVILVGISLFSFRLLFAYHDMPEPDLTVKVTGNQWNWAYEYPDQGVAEYISNMVPEGELAERGLSHAVYRLAADEPMVVPVGKTVRLLITASDVIHAVALPAFGLKTDAVPGRVNETWFKAERTGVFYGQCSELCGVDHAFMPIQINVVTQAEFERWIASKGGSMTPKTAEAAPGGTAAQVEAGTTGAPVVGTATTGPEAGAQTGIPTAQTATTPTAPTVQPAPAAASAAPAAQ
>NZ_CP048751.1|WP_008263055.1|2272342_2274022_+|cytochrome-c-oxidase-subunit-I
MADATVSTRDVLPAHDAHHHDDHKVGFFTRWFLSTNHKDIGTLYLMFAIMAGIVGGALSGLIRWELAEPGIQIFKEGSSIQLLGLVEQSKHGYNAVVTAHALIMIFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLVAAWCLLILSMFVDGGPGKGFGGGWTAYPPLSTVGHVGPAFDLAIFALHVAGASSILGAINFITTILNMRAPGMTLHRMPLFAWSVLITAFLLLLSLPVLAGAITMLLTDRNFGTHFFDPAGGGDPIMYQHLFWFFGHPEVYILILPGFGIISHIVSTFSRKPVFGYLAMAYAMVAIGFVGFVVWAHHMYTVGMSVNLRAYFIAATMIIAVPTGVKIFSWIATMWGGSISFKTPMLWAIGFIFLFTVGGVTGVVLSNAGIDYSLHDTYYVVAHFHYVLSLGAVFAIFAGFYYWFEKMFGVKYNEFLGATHFWIMFVGVNLVFFPQHFLGLQGMPRRYIDYPDAFTLWNQISSIGYAITAVGVLVFLVMLAEAAIRRRPGVANPWGEGATTLEWTLSSPPPTHQFNELPVVKGDEH
>NZ_CP048751.1|WP_040349745.1|2274124_2275093_+|protoheme-IX-farnesyltransferase
MTQDVQTRPAISTAQPEDFFQLLKPRVMSVVVFTAATGLVMAPGSMNPLVAAIAILCIAVGAGAAGSLNMALEGETDALMRRTRGRPVAAGRVRKNDAMAYGVILSLFSVMLLGMNTNWFAAGLLALTIVYYAGFYTLLLKRRTPQNIVIGGAAGAFPPVIGWAAATGQAPWQAWLLFLIIFLWTPPHSWALALYSAGDYAKAGIPMMPVARGARSTRLQILIYSLVFVASAVAPALVGMGGMIYAVVSVAGGLGFLGLAWRLYRSRAGDEPDKADTVGREAALYDVKVQAKPARDLFAFSILYLVALFSAFLVEAVAGLGA
>NZ_CP048751.1|WP_008261146.1|2275096_2275267_+|hypothetical-protein
MRLTPEELRARKRRNVWIATALVAFIVLVFTTTVLRLQQNQAAERALLQEATGAPR
>NZ_CP048751.1|WP_008263478.1|2275263_2275812_+|cytochrome-c-oxidase-assembly-protein
MNNPGRKNLIAIVCVLGVMGMTGAAFAAVPLYRMFCQVTGFDGTVRRADKAPDTVLDQTVLVRFDTNVRGLPMTFRAEQTTQRVRIGETGLAYFDVTNTSDQPIQVRAGYNVVPEYTGPYFQKLQCFCFSDQTLAAGETRQFPVQYFIAPELATDREARGAREITLSYTFYPSVDAPTGPNA
>NZ_CP048751.1|WP_040350181.1|2275816_2276236_+|NUDIX-domain-containing-protein
MARPGVDFPGVGCGLVIQRADGRVLLCKRLKAPEAGHWNIVGGKVDHMEISAEAARREAEEESGLTIGAVEFLCVSEEIIAADRQHWVSLIYLARDFTGEPWLTEPDKLSEIGWFDPTDPPQPLSVFSKTAFEALKARV
>NZ_CP048751.1|WP_008260260.1|2276501_2277410_+|cytochrome-c-oxidase-subunit-3
MADAHAAPHHDYHLVPPSPWPLLSSIAATIMFIGAVIWMKGLAPAENGPIAANFLAEGKPGVFFAGLAGVLLSAIGWWSDVIKESKAGDHTPVVSIGLRYGMILFIASEVMFFVAFFWMFFDMALFHESRALTPEVGTWADTAKAWSTWPPKGVEVLSPWQLPLLNTVTLLLSGCTVTWAHHAIQVGDRKGAKIALIITVALGVFFTSVQAYEYQHILHEHLFFNEEAANSGLYGSIFFMATGFHGFHVLIGTIFLAVCLIRLLAGDFTPQKHFGFEAAAWYWHFVDVVWLFLFAFVYVVFG
>NZ_CP048751.1|WP_008262962.1|2277406_2277865_+|DUF983-domain-containing-protein
MIPDTTDKIAAAGDEGSSPAVAVSAVRAGLKGRCPRCGQGRLFAGFLKVRAGCEACGLDFSTIQTGDGPASFIMQIAGFLVGFSALAVEIKFHPPMWLHLIVWLPLVAALSLALMRPGRGLMIGLQYRNQSAPSTAARSPSPDPLRSTGEDI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	226328-226353	3	0.885
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1864720-1864745	4	0.846
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	651413-651438	4	0.846
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	651448-651473	4	0.846
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	537474-537499	4	0.846
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	308014-308039	4	0.846
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	651263-651288	4	0.846
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	651241-651266	4	0.846
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1256274-1256299	4	0.846
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	530696-530721	4	0.846
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	520258-520283	4	0.846
NZ_CP048751_2	2.1\|2269278\|29\|NZ_CP048751\|CRISPRCasFinder	2269278-2269306	29	NC_013852	Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence	87341-87369	5	0.828
NZ_CP048751_2	2.1\|2269278\|29\|NZ_CP048751\|CRISPRCasFinder	2269278-2269306	29	MH669000	Gordonia phage Ali17, complete genome	48739-48767	5	0.828
NZ_CP048751_2	2.1\|2269278\|29\|NZ_CP048751\|CRISPRCasFinder	2269278-2269306	29	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	727945-727973	5	0.828
NZ_CP048751_2	2.1\|2269278\|29\|NZ_CP048751\|CRISPRCasFinder	2269278-2269306	29	NZ_CP020811	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence	28706-28734	5	0.828
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_KJ599675	Micrococcus sp. A7 plasmid pLMA7, complete sequence	6830-6855	5	0.808
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NC_024972	Micrococcus sp. A1 plasmid pLMA1, complete sequence	4678-4703	5	0.808
NZ_CP048751_2	2.2\|2269335\|26\|NZ_CP048751\|CRISPRCasFinder	2269335-2269360	26	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	82103-82128	5	0.808
NZ_CP048751_2	2.1\|2269278\|29\|NZ_CP048751\|CRISPRCasFinder	2269278-2269306	29	NZ_CP044330	Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence	107055-107083	7	0.759
NZ_CP048751_2	2.1\|2269278\|29\|NZ_CP048751\|CRISPRCasFinder	2269278-2269306	29	NZ_CP034088	Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence	74105-74133	7	0.759
NZ_CP048751_2	2.4\|2269277\|34\|NZ_CP048751\|PILER-CR	2269277-2269310	34	MH669000	Gordonia phage Ali17, complete genome	48735-48768	7	0.794
NZ_CP048751_2	2.5\|2269334\|34\|NZ_CP048751\|PILER-CR	2269334-2269367	34	NZ_CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	118074-118107	7	0.794
NZ_CP048751_2	2.1\|2269278\|29\|NZ_CP048751\|CRISPRCasFinder	2269278-2269306	29	NZ_CP046456	Corynebacterium sp. 2039 plasmid pCOCCU, complete sequence	21898-21926	8	0.724
NZ_CP048751_2	2.1\|2269278\|29\|NZ_CP048751\|CRISPRCasFinder	2269278-2269306	29	NC_008741	Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence	52000-52028	8	0.724
NZ_CP048751_2	2.5\|2269334\|34\|NZ_CP048751\|PILER-CR	2269334-2269367	34	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	370384-370417	8	0.765
NZ_CP048751_2	2.3\|2269389\|32\|NZ_CP048751\|CRISPRCasFinder	2269389-2269420	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1593163-1593194	9	0.719
NZ_CP048751_2	2.3\|2269389\|32\|NZ_CP048751\|CRISPRCasFinder	2269389-2269420	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1072240-1072271	9	0.719
NZ_CP048751_2	2.3\|2269389\|32\|NZ_CP048751\|CRISPRCasFinder	2269389-2269420	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1541190-1541221	9	0.719
NZ_CP048751_2	2.3\|2269389\|32\|NZ_CP048751\|CRISPRCasFinder	2269389-2269420	32	NZ_CP045385	Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence	571198-571229	9	0.719
NZ_CP048751_2	2.3\|2269389\|32\|NZ_CP048751\|CRISPRCasFinder	2269389-2269420	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	52027-52058	9	0.719
NZ_CP048751_2	2.3\|2269389\|32\|NZ_CP048751\|CRISPRCasFinder	2269389-2269420	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	591175-591206	9	0.719
NZ_CP048751_2	2.4\|2269277\|34\|NZ_CP048751\|PILER-CR	2269277-2269310	34	NZ_CP034088	Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence	74101-74134	9	0.735
NZ_CP048751_2	2.4\|2269277\|34\|NZ_CP048751\|PILER-CR	2269277-2269310	34	NZ_CP044330	Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence	107054-107087	9	0.735
NZ_CP048751_2	2.4\|2269277\|34\|NZ_CP048751\|PILER-CR	2269277-2269310	34	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	727944-727977	9	0.735
NZ_CP048751_2	2.3\|2269389\|32\|NZ_CP048751\|CRISPRCasFinder	2269389-2269420	32	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	421306-421337	10	0.688
NZ_CP048751_2	2.4\|2269277\|34\|NZ_CP048751\|PILER-CR	2269277-2269310	34	NC_013852	Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence	87340-87373	10	0.706

1. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 3, identity: 0.885

cctggacgtcgccggtgggggcgatg	CRISPR spacer
cctggacgtcgccggtggaggcgaga	Protospacer
******************.***** .

2. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gatcgacgttgccggtgggggcgatg	Protospacer
  * *****.****************

3. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gatcgacgttgccggtgggggcgatg	Protospacer
  * *****.****************

4. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gatcgacgttgccggtgggggcgatg	Protospacer
  * *****.****************

5. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gatcgacgttgccggtgggggcgatg	Protospacer
  * *****.****************

6. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gatcgacgttgccggtgggggcgatg	Protospacer
  * *****.****************

7. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gatcgacgttgccggtgggggcgatg	Protospacer
  * *****.****************

8. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gatcgacgttgccggtgggggcgatg	Protospacer
  * *****.****************

9. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gatcgacgttgccggtgggggcgatg	Protospacer
  * *****.****************

10. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gatcgacgttgccggtgggggcgatg	Protospacer
  * *****.****************

11. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 4, identity: 0.846

cctggacgtcgccggtgggggcgatg	CRISPR spacer
gctggacgtcgccggcggtggcgacg	Protospacer
 **************.** *****.*

12. spacer 2.1|2269278|29|NZ_CP048751|CRISPRCasFinder matches to NC_013852 (Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence) position: , mismatch: 5, identity: 0.828

tggtcagcttggcggggcgggtcgccagg	CRISPR spacer
ggggcagcttggccgggcgggtcgccgga	Protospacer
 ** ********* ************.*.

13. spacer 2.1|2269278|29|NZ_CP048751|CRISPRCasFinder matches to MH669000 (Gordonia phage Ali17, complete genome) position: , mismatch: 5, identity: 0.828

tggtcagcttggcggggcgggtcgccagg	CRISPR spacer
tggtcagcttggcgaggccggtcgcggtg	Protospacer
**************.*** ****** . *

14. spacer 2.1|2269278|29|NZ_CP048751|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 5, identity: 0.828

tggtcagcttggcggggcgggtcgccagg	CRISPR spacer
cggtcaggttggcggcgcgggtcgcgcgg	Protospacer
.****** ******* *********  **

15. spacer 2.1|2269278|29|NZ_CP048751|CRISPRCasFinder matches to NZ_CP020811 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.828

tggtcagc-ttggcggggcgggtcgccagg	CRISPR spacer
-gaccaccgttggcgcggcgggtcgccagg	Protospacer
 *..** * ****** **************

16. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_KJ599675 (Micrococcus sp. A7 plasmid pLMA7, complete sequence) position: , mismatch: 5, identity: 0.808

cctggacgtcgccggtgggggcgatg	CRISPR spacer
cggtgacgtcgccggtgggggtgatc	Protospacer
*   *****************.***

17. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NC_024972 (Micrococcus sp. A1 plasmid pLMA1, complete sequence) position: , mismatch: 5, identity: 0.808

cctggacgtcgccggtgggggcgatg	CRISPR spacer
cggtgacgtcgccggtgggggtgatc	Protospacer
*   *****************.***

18. spacer 2.2|2269335|26|NZ_CP048751|CRISPRCasFinder matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 5, identity: 0.808

cctggacgtcgccggtgggggcgatg	CRISPR spacer
cggtgacgtcgccggtgggggtgatc	Protospacer
*   *****************.***

19. spacer 2.1|2269278|29|NZ_CP048751|CRISPRCasFinder matches to NZ_CP044330 (Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

tggtcagcttggcggggcgggtcgccagg	CRISPR spacer
gcatcagcttggcgcggcgtgtcgccacc	Protospacer
  .*********** **** *******

20. spacer 2.1|2269278|29|NZ_CP048751|CRISPRCasFinder matches to NZ_CP034088 (Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence) position: , mismatch: 7, identity: 0.759

tggtcagcttggcggggcgggtcgccagg	CRISPR spacer
gcatcagcttggcgcggcgtgtcgccacc	Protospacer
  .*********** **** *******

21. spacer 2.4|2269277|34|NZ_CP048751|PILER-CR matches to MH669000 (Gordonia phage Ali17, complete genome) position: , mismatch: 7, identity: 0.794

ctggtcagcttggcggggcgggtcgccaggctga---	CRISPR spacer
atggtcagcttggcgaggccggtcgc---ggtgagcg	Protospacer
 **************.*** ******   * ***

22. spacer 2.5|2269334|34|NZ_CP048751|PILER-CR matches to NZ_CP022365 (Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence) position: , mismatch: 7, identity: 0.794

ctgacctggacgtcgccggtgggggcgatgtcgg	CRISPR spacer
cggccatagccgtcgtcggtggtggcgatgtcgg	Protospacer
* * * *.* *****.****** ***********

23. spacer 2.1|2269278|29|NZ_CP048751|CRISPRCasFinder matches to NZ_CP046456 (Corynebacterium sp. 2039 plasmid pCOCCU, complete sequence) position: , mismatch: 8, identity: 0.724

tggtcagcttggcggggcgggtcgccagg	CRISPR spacer
aggtcagcttggccgggcgggtgtaggtg	Protospacer
 ************ ********    . *

24. spacer 2.1|2269278|29|NZ_CP048751|CRISPRCasFinder matches to NC_008741 (Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence) position: , mismatch: 8, identity: 0.724

tggtcagcttggcggggcgggtcgccagg	CRISPR spacer
ctaccagcttggcggggtgcgtcgccact	Protospacer
. ..*************.* *******

25. spacer 2.5|2269334|34|NZ_CP048751|PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 8, identity: 0.765

---ctgacctggacgtcgccggtgggggcgatgtcgg	CRISPR spacer
cctcaggc---gccgccgccggtgggggcgatggcgg	Protospacer
   * *.*   * **.***************** ***

26. spacer 2.3|2269389|32|NZ_CP048751|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccttggcgtccttggcgtccagagctcgaaga	CRISPR spacer
ccttggcggccttggcctccagaagctccagc	Protospacer
******** ******* ******. ..  **

27. spacer 2.3|2269389|32|NZ_CP048751|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccttggcgtccttggcgtccagagctcgaaga	CRISPR spacer
ccttggcggccttggcctccagaagctccagc	Protospacer
******** ******* ******. ..  **

28. spacer 2.3|2269389|32|NZ_CP048751|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccttggcgtccttggcgtccagagctcgaaga	CRISPR spacer
ccttggcggccttggcctccagaagctccagc	Protospacer
******** ******* ******. ..  **

29. spacer 2.3|2269389|32|NZ_CP048751|CRISPRCasFinder matches to NZ_CP045385 (Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence) position: , mismatch: 9, identity: 0.719

ccttggcgtccttggcgtccagagctcgaaga	CRISPR spacer
ccttggcggcattggcgtccagaccatggccg	Protospacer
******** * ************ * .*.  .

30. spacer 2.3|2269389|32|NZ_CP048751|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccttggcgtccttggcgtccagagctcgaaga	CRISPR spacer
ccttggcggccttggcctccagaagctccagg	Protospacer
******** ******* ******. ..  **.

31. spacer 2.3|2269389|32|NZ_CP048751|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccttggcgtccttggcgtccagagctcgaaga	CRISPR spacer
ccttggcggccttggcctccagaagctccagc	Protospacer
******** ******* ******. ..  **

32. spacer 2.4|2269277|34|NZ_CP048751|PILER-CR matches to NZ_CP034088 (Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence) position: , mismatch: 9, identity: 0.735

ctggtcagcttggcggggcgggtcgccaggctga	CRISPR spacer
ggcatcagcttggcgcggcgtgtcgccaccttga	Protospacer
   .*********** **** *******  .***

33. spacer 2.4|2269277|34|NZ_CP048751|PILER-CR matches to NZ_CP044330 (Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

ctggtcagcttggcggggcgggtcgccaggctga	CRISPR spacer
ggcatcagcttggcgcggcgtgtcgccaccttga	Protospacer
   .*********** **** *******  .***

34. spacer 2.4|2269277|34|NZ_CP048751|PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 9, identity: 0.735

ctggtcagcttggcggggcgggtcgccaggctga	CRISPR spacer
gcggtcaggttggcggcgcgggtcgcgcggtcgg	Protospacer
 .****** ******* *********  **..*.

35. spacer 2.3|2269389|32|NZ_CP048751|CRISPRCasFinder matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 10, identity: 0.688

ccttggcgtccttggcgtccagagctcgaaga	CRISPR spacer
gggtggcgttcttgccgtccagagctgcctgc	Protospacer
   ******.**** ***********    *

36. spacer 2.4|2269277|34|NZ_CP048751|PILER-CR matches to NC_013852 (Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence) position: , mismatch: 10, identity: 0.706

ctggtcagcttggcggggcgggtcgccaggctga	CRISPR spacer
aggggcagcttggccgggcgggtcgccggatgcc	Protospacer
  ** ********* ************.*..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

772766 : 820228

Paracoccus_phage(20.0%)

capsid,tail,head,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156796487.1\|772766_773523_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_156796515.1\|775523_777305_+	alpha-amylase	NA	NA	NA	NA
WP_008258837.1\|777301_778942_+	DUF3459 domain-containing protein	NA	NA	NA	NA
WP_008264064.1\|778947_779961_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_008260821.1\|780064_782128_+	glycoside hydrolase family 97 protein	NA	NA	NA	NA
WP_035306550.1\|782270_783806_+	MFS transporter	NA	NA	NA	NA
WP_008264391.1\|783815_786185_+	glucan 1,4-alpha-glucosidase	NA	NA	NA	NA
WP_008259480.1\|786238_786934_-	hypothetical protein	NA	NA	NA	NA
WP_008262578.1\|787024_788374_-	ammonium transporter	NA	NA	NA	NA
WP_008264195.1\|788589_789696_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_008260476.1\|789695_790280_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_008258729.1\|790272_791730_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_008258930.1\|791722_792970_-	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	5.0e-07	24.5
WP_008261070.1\|792969_793221_-	hypothetical protein	NA	NA	NA	NA
WP_008263606.1\|793222_794935_-	acetolactate synthase 2 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	3.0e-55	29.3
WP_008260071.1\|794954_795968_-	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_008263855.1\|795974_797714_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_154725852.1\|797804_797957_-	hypothetical protein	NA	NA	NA	NA
WP_008261031.1\|798206_799214_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_154725853.1\|799235_799658_+	hypothetical protein	NA	NA	NA	NA
WP_008260654.1\|799654_800851_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_008259251.1\|800995_802081_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA
WP_008262604.1\|802085_802724_-	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_008260881.1\|802806_803826_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_008260449.1\|803833_804139_+	N-acetyltransferase	NA	NA	NA	NA
WP_081836252.1\|804381_805269_+	RNA polymerase sigma factor RpoH	NA	NA	NA	NA
WP_008264315.1\|805321_806125_-	response regulator	NA	NA	NA	NA
WP_035310453.1\|806199_807495_-	adenylosuccinate synthase	K7YXK1	Megavirus	2.4e-57	33.0
WP_008262095.1\|807629_808787_-	phosphoserine transaminase	NA	NA	NA	NA
WP_008264337.1\|808832_809753_-	DnaJ domain-containing protein	A0A2L0UZR4	Agrobacterium_phage	5.8e-21	30.7
WP_008264339.1\|809842_813571_-	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	5.1e-164	34.6
WP_156796514.1\|813739_814264_-	peptidase P60	F4YXU4	Roseobacter_phage	7.1e-24	43.4
WP_040349261.1\|814362_815007_-	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	2.1e-25	35.5
WP_008262481.1\|815125_815737_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	3.8e-45	46.1
WP_155988191.1\|815783_816536_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_008260145.1\|816589_817120_-\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_008262036.1\|817109_817268_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_083793329.1\|817294_817633_-	gene transfer agent family protein	NA	NA	NA	NA
WP_164952607.1\|817629_818040_-\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	2.8e-15	36.4
WP_040349258.1\|818154_818538_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_008259165.1\|818546_818813_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_008263383.1\|818986_820228_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	6.1e-82	44.5

DBSCAN-SWA_2

3126156 : 3134466

Orpheovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008261280.1\|3126156_3127377_-	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	6.1e-42	31.6
WP_008259551.1\|3127399_3128866_-	deoxyribodipyrimidine photo-lyase	A0A2H4UV63	Bodo_saltans_virus	1.3e-54	31.2
WP_008263940.1\|3128990_3129842_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.1e-50	43.9
WP_008259755.1\|3129860_3131315_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	A0A1B1IUK5	uncultured_Mediterranean_phage	1.1e-34	31.1
WP_008260555.1\|3131323_3132313_+	ADP-glyceromanno-heptose 6-epimerase	E3SJ87	Synechococcus_phage	6.7e-23	30.7
WP_008260674.1\|3132309_3133407_+	DUF3089 domain-containing protein	NA	NA	NA	NA
WP_008263714.1\|3133485_3134466_+	SPFH/Band 7/PHB domain protein	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	6.2e-21	28.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048751

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection