CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP047348	Proteus vulgaris strain ZN3 plasmid pZN3-qnrD, complete sequence	0 crisprs	NA	0	0
NZ_CP047345	Proteus vulgaris strain ZN3 plasmid pZN3-tetX-171kb, complete sequence	0 crisprs	DEDDh	0	1
NZ_CP047347	Proteus vulgaris strain ZN3 plasmid pZN3-6kb, complete sequence	0 crisprs	NA	0	0
NZ_CP047346	Proteus vulgaris strain ZN3 plasmid pZN3-cfr-121kb, complete sequence	0 crisprs	csa3	0	2
NZ_CP047344	Proteus vulgaris strain ZN3 chromosome, complete genome	3 crisprs	cas3,DEDDh,DinG,csa3,RT,WYL,TnsE_C	2	10

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28313 : 67350

Escherichia_phage(36.36%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000792636.1\|28313_28847_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.8e-21	33.9
WP_002210551.1\|29020_29149_-	hypothetical protein	NA	NA	NA	NA
WP_002210549.1\|29818_30160_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	7.3e-62	100.0
WP_001067855.1\|30196_30901_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018326.1\|31083_31899_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.3e-161	98.5
WP_000019441.1\|32052_33033_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.3e-185	99.1
WP_001067855.1\|33217_33922_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_164526951.1\|34154_35015_+	aminoglycoside 3-N-acetyltransferase	NA	NA	NA	NA
WP_000587837.1\|35027_35570_+	AAA family ATPase	NA	NA	NA	NA
WP_000951934.1\|36051_36243_-	hypothetical protein	NA	NA	NA	NA
WP_164526952.1\|36266_36494_+	hypothetical protein	NA	NA	NA	NA
WP_000080861.1\|36544_37681_+	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_014342212.1\|37647_37797_-	hypothetical protein	NA	NA	NA	NA
WP_000971921.1\|37795_39166_+\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA
WP_014342213.1\|39307_39433_-	hypothetical protein	NA	NA	NA	NA
WP_000027057.1\|39986_40847_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_140114247.1\|43084_46066_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.7e-32	24.3
WP_001120888.1\|46483_47977_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_079879887.1\|48007_48232_+	hypothetical protein	NA	NA	NA	NA
WP_086371372.1\|48322_48835_+	dihydrofolate reductase	U5J9P6	Bacillus_phage	9.4e-29	42.9
WP_072161421.1\|49326_50295_+\|transposase	IS91-like element ISVsa3 family transposase	NA	NA	NA	NA
WP_084929516.1\|50635_51508_-	hypothetical protein	NA	NA	NA	NA
WP_164526953.1\|51968_53468_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_082987283.1\|53498_53744_+	hypothetical protein	NA	NA	NA	NA
WP_044502095.1\|54038_54416_+	hypothetical protein	NA	NA	NA	NA
WP_064754130.1\|54412_55576_+	tetracycline-inactivating monooxygenase Tet(X)	NA	NA	NA	NA
WP_164526954.1\|55593_56454_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001120888.1\|57098_58592_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_094315248.1\|59189_60812_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	9.9e-32	26.1
WP_164526955.1\|61397_62126_-	hypothetical protein	NA	NA	NA	NA
WP_094315246.1\|62070_62400_+	GrpB family protein	NA	NA	NA	NA
WP_164526953.1\|62655_64155_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_164526956.1\|64185_64929_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214122.1\|65151_66366_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_001255015.1\|66393_66699_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001120891.1\|66810_67350_+\|transposase	IS91 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047346

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15524 : 55572

Escherichia_phage(28.57%)

transposase,integrase

attL 28889:28902|attR 33080:33093

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164526960.1\|15524_15686_-\|transposase	transposase	NA	NA	NA	NA
WP_125894549.1\|15793_16114_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_125894551.1\|16655_17819_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_125894553.1\|18147_19158_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	1.3e-183	98.8
WP_164526961.1\|19350_20274_-\|transposase	IS5-like element ISSpu20 family transposase	A0A1V0E8E1	Vibrio_phage	8.7e-150	84.9
WP_014611607.1\|21482_22193_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-31	38.3
WP_089110954.1\|22194_23400_-	ABC transporter permease	NA	NA	NA	NA
WP_102138714.1\|23396_24548_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004393990.1\|24544_25153_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_125894560.1\|25617_26568_+\|transposase	IS5-like element ISEc68 family transposase	Q38213	Escherichia_phage	1.6e-151	81.6
WP_125894574.1\|26858_27380_-	hypothetical protein	NA	NA	NA	NA
WP_164526962.1\|27577_27754_-	hypothetical protein	NA	NA	NA	NA
WP_125894564.1\|27737_28487_-	signal peptidase I	NA	NA	NA	NA
28889:28902	attL	NA	NA	NA	NA
WP_164526963.1\|28979_29987_-	hypothetical protein	NA	NA	NA	NA
WP_125894568.1\|30007_30667_-	DUF4365 domain-containing protein	NA	NA	NA	NA
WP_164526964.1\|30835_31651_-\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	3.8e-24	29.3
WP_048607643.1\|32194_32992_+	hypothetical protein	NA	NA	NA	NA
WP_071547955.1\|33356_33500_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
33080:33093	attR	NA	NA	NA	NA
WP_096864991.1\|33585_33966_-	hypothetical protein	NA	NA	NA	NA
WP_023159957.1\|33996_34329_-	endoribonuclease MazF	A0A1S5SEX8	Streptococcus_phage	5.6e-06	32.4
WP_096864992.1\|34328_34574_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109910889.1\|34843_35467_+	AAA family ATPase	D4HTX7	Vibrio_phage	1.6e-22	35.4
WP_096864993.1\|35567_35795_+	DNA partition complex ParG	NA	NA	NA	NA
WP_109910890.1\|35892_36261_-	hypothetical protein	NA	NA	NA	NA
WP_109910891.1\|36610_37003_-	hypothetical protein	NA	NA	NA	NA
WP_048821775.1\|37012_37435_-	hypothetical protein	NA	NA	NA	NA
WP_023159966.1\|37427_37772_-	single-stranded DNA-binding protein	A0A291LA01	Bordetella_phage	3.6e-08	39.3
WP_072070749.1\|37774_38821_-	ParB/RepB/Spo0J family partition protein	D5LGX9	Escherichia_phage	1.0e-29	31.8
WP_109910892.1\|39172_40183_-	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	9.9e-123	63.9
WP_024008861.1\|40823_41675_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.5e-50	37.1
WP_024008860.1\|41685_43173_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.2e-213	77.3
WP_094963231.1\|43528_44734_-	MFS transporter	NA	NA	NA	NA
WP_164526965.1\|44792_44984_-	hypothetical protein	NA	NA	NA	NA
WP_164526966.1\|44969_45647_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088605.1\|45624_46248_-	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001089072.1\|46329_47535_+	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
WP_000429836.1\|48811_49246_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294663.1\|49317_49668_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_000732292.1\|49681_49957_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001340589.1\|49992_50415_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000105636.1\|50466_52161_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001277456.1\|52178_52541_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000993386.1\|52537_52774_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001300294.1\|52809_53478_+	EAL domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|54867_55572_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

59490 : 110217

Escherichia_phage(39.13%)

transposase,integrase

attL 72371:72430|attR 106380:106581

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_126616202.1\|59490_61110_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.4e-56	32.2
WP_159287723.1\|61150_61438_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|61473_62178_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000344784.1\|62461_63322_+	AAA family ATPase	NA	NA	NA	NA
WP_164526967.1\|63372_64917_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-38	34.6
WP_001324342.1\|65039_66563_+\|transposase	IS21-like element IS1326 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-15	24.2
WP_001163403.1\|66552_67335_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.5e-33	35.0
WP_000376623.1\|67510_68011_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|68138_68978_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|68971_69319_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000939727.1\|69466_70288_-	lincosamide nucleotidyltransferase Lnu(F)	NA	NA	NA	NA
WP_071593219.1\|70419_71211_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000845054.1\|71356_72370_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
72371:72430	attL	NA	NA	NA	NA
WP_000454193.1\|72572_72923_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|73048_73609_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_164526968.1\|73611_76563_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.4
WP_046788546.1\|76571_76973_+	hypothetical protein	NA	NA	NA	NA
WP_001067784.1\|77057_77762_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
WP_001447541.1\|78686_79571_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214122.1\|79793_81008_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_001255015.1\|81035_81341_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001120888.1\|81452_82946_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1\|82976_83228_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|83121_83424_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|83510_84326_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_085940648.1\|84415_85505_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_006581703.1\|85702_86188_-	hypothetical protein	NA	NA	NA	NA
WP_000602738.1\|87998_88751_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
WP_000742814.1\|89172_90198_-	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
WP_001199192.1\|90426_91203_-	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA
WP_001067858.1\|91316_92021_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_064732565.1\|92030_92435_+	bleomycin binding protein	NA	NA	NA	NA
WP_000084744.1\|92754_93147_-	NimC/NimA family protein	NA	NA	NA	NA
WP_001067855.1\|93342_94047_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|94236_95052_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_001067858.1\|95202_95907_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_156734540.1\|95946_96624_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_124724886.1\|96712_96982_+	hypothetical protein	NA	NA	NA	NA
WP_015639707.1\|96915_97215_+	DUF536 domain-containing protein	NA	NA	NA	NA
WP_156734542.1\|97246_98296_+	Cfr family 23S rRNA (adenine(2503)-C(8))-methyltransferase	NA	NA	NA	NA
WP_164526969.1\|99020_99554_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.2e-12	31.3
WP_001067858.1\|99600_100305_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_063102497.1\|100498_100885_+	bleomycin binding protein	NA	NA	NA	NA
WP_004193041.1\|101204_101597_-	NimC/NimA family protein	NA	NA	NA	NA
WP_015344972.1\|101763_102963_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001206356.1\|103524_104316_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_071523897.1\|104321_104567_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|104723_105221_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845054.1\|105365_106379_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_001162012.1\|106684_107242_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
106380:106581	attR	NA	NA	NA	NA
WP_001138073.1\|107244_110217_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP047344

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047344_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047344_1

2234102-2234191

Orphan

Consensus_repeat	Method
CTTGAAGTATGACGAGTATCATTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047344_1

>merge|NZ_CP047344|1|2234102-2234191|CRISPRCasFinder
CTTGAAGTATGACGAGTATCATTAGTATGTGGCTAGTGCGAATGAAAGAAGTCAACAACGCTACGGCTTGAAGTATGACGAGTATCAATT

>NZ_CP047344|1|1|2234102-2234191|CRISPRCasFinder
CTTGAAGTATGACGAGTATCATTA	GTATGTGGCTAGTGCGAATGAAAGAAGTCAACAACGCTACGG
CTTGAAGTATGACGAGTATCAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047344.1\|WP_036912881.1\|2227929_2228112_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047344.1\|WP_164526385.1\|2242430_2243906_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_CP047344.1\|WP_072068276.1\|2237829_2239107_-\|cytosine-deaminase	unknown	unknown	gnl\|CDD\|181713
NZ_CP047344.1\|WP_115349861.1\|2239096_2240347_-\|cytosine-permease	unknown	unknown	gnl\|CDD\|236821
NZ_CP047344.1\|WP_164526382.1\|2235998_2236343_-\|phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226924
NZ_CP047344.1\|WP_006536483.1\|2233612_2233975_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047344.1\|WP_072068279.1\|2243930_2244533_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_CP047344.1\|WP_072068273.1\|2234272_2235250_+\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_CP047344.1\|WP_072068271.1\|2231514_2232399_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NZ_CP047344.1\|WP_072068473.1\|2236756_2237509_-\|DUF3944-domain-containing-protein	unknown	unknown	gnl\|CDD\|227078
NZ_CP047344.1\|WP_072068269.1\|2228116_2228605_-\|threonine/serine-exporter	unknown	unknown	gnl\|CDD\|182143
NZ_CP047344.1\|WP_115349858.1\|2230488_2230827_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047344.1\|WP_115349856.1\|2228580_2229384_-\|threonine/serine-exporter-ThrE-family-protein	unknown	unknown	gnl\|CDD\|225514
NZ_CP047344.1\|WP_115349855.1\|2226692_2227676_-\|endonuclease-I	unknown	unknown	gnl\|CDD\|185091
NZ_CP047344.1\|WP_072068274.1\|2235423_2235888_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP047344.1\|WP_164526384.1\|2240712_2242392_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP047344.1\|WP_036912874.1\|2230942_2231371_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185353
NZ_CP047344.1\|WP_164526383.1\|2236345_2236564_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047344.1\|WP_036936466.1\|2232662_2232884_+\|DUF2594-family-protein	unknown	unknown	gnl\|CDD\|371234
NZ_CP047344.1\|WP_072068270.1\|2229985_2230423_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|184967

Protein	Function_ID	Function_description	E-value
NZ_CP047344.1\|WP_072068276.1\|2237829_2239107_-\|cytosine-deaminase	gnl\|CDD\|181713	PRK09230, PRK09230, cytosine deaminase; Provisional.	0
NZ_CP047344.1\|WP_115349861.1\|2239096_2240347_-\|cytosine-permease	gnl\|CDD\|236821	PRK11017, codB, cytosine permease; Provisional.	0
NZ_CP047344.1\|WP_164526382.1\|2235998_2236343_-\|phosphotyrosine-protein-phosphatase	gnl\|CDD\|226924	COG4551, COG4551, Predicted protein tyrosine phosphatase [General function prediction only].	6.91266e-35
NZ_CP047344.1\|WP_036936466.1\|2232662_2232884_+\|DUF2594-family-protein	gnl\|CDD\|371234	pfam10769, DUF2594, Protein of unknown function (DUF2594). This family of proteins with unknown function appear to be restricted to Enterobacteriaceae.	1.41261e-34
NZ_CP047344.1\|WP_072068279.1\|2243930_2244533_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	6.86708e-107
NZ_CP047344.1\|WP_072068273.1\|2234272_2235250_+\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_CP047344.1\|WP_072068271.1\|2231514_2232399_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	2.58388e-75
NZ_CP047344.1\|WP_072068473.1\|2236756_2237509_-\|DUF3944-domain-containing-protein	gnl\|CDD\|227078	COG4735, COG4735, Uncharacterized protein conserved in bacteria [Function unknown].	5.96535e-56
NZ_CP047344.1\|WP_072068269.1\|2228116_2228605_-\|threonine/serine-exporter	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	9.15315e-95
NZ_CP047344.1\|WP_115349856.1\|2228580_2229384_-\|threonine/serine-exporter-ThrE-family-protein	gnl\|CDD\|225514	COG2966, COG2966, Uncharacterized conserved protein [Function unknown].	4.56782e-80
NZ_CP047344.1\|WP_115349855.1\|2226692_2227676_-\|endonuclease-I	gnl\|CDD\|185091	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional.	5.04973e-96
NZ_CP047344.1\|WP_072068274.1\|2235423_2235888_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	5.78139e-31
NZ_CP047344.1\|WP_164526384.1\|2240712_2242392_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP047344.1\|WP_036912874.1\|2230942_2231371_-\|universal-stress-protein	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	4.60228e-37
NZ_CP047344.1\|WP_164526385.1\|2242430_2243906_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_CP047344.1\|WP_072068270.1\|2229985_2230423_-\|universal-stress-protein	gnl\|CDD\|184967	PRK15005, PRK15005, universal stress protein UspF.	1.75768e-37

>NZ_CP047344.1|WP_006536483.1|2233612_2233975_+|hypothetical-protein
MKPLLLSLLLLPAVAFANPTKMADDYCDTFKDISIKAYDTKEPAEKIAKDAVASLNAKKFDFAKLEATEAQFTEGTIEVVNSLRDAKAEIGSRAEFQEGLTQIVAACKIQMISALEEQKK
>NZ_CP047344.1|WP_036936466.1|2232662_2232884_+|DUF2594-family-protein
MNEKFKTQADVETLAEEVACLKTLVTYMLKALGQADAGRIILNIERAIAEVDDEKQAETFRNTISQIKTVYRQ
>NZ_CP047344.1|WP_072068271.1|2231514_2232399_-|NAD(P)H-hydrate-dehydratase
MKKEQLLYAITHYPALYQRKTGNTHKGTFGTIGIIGSAEGMSGAIVLAGKSALKAGCGKVFLGFAQLQLPLPFIDSAPELMLKTAFELVDRQDISAWAIGCGLGVSANSENILLNVLAQRDENQPYVFDADALVLMAKLKSKISLNQHCVLTPHPKEASILLNCTLSDVQNNREQAAKEVAKLYHCWAILKGENTVITSPTGEILINRTGNSGLSTAGSGDVLTGIMGSFLAQGMVMSEAVKSAVWIHGIAADILVEKGIGPIGLTASELIDTVRDVRNQIWVQTQQHNADYFE
>NZ_CP047344.1|WP_036912874.1|2230942_2231371_-|universal-stress-protein
MYKTILVPIDIVEEELTSKAVRHAVYLAKETGANLHLIHVLPISSAIINAYSLGYPEIKDKATVKAENDMQMLVDSVDLPAEKVAYTVTFGSPRDEILVTAKDIQADLIVIGSRRPNISTHLLGSTAAGVVRYAEISVLVVR
>NZ_CP047344.1|WP_115349858.1|2230488_2230827_-|hypothetical-protein
MEKFTQELLRLDRFILRILRYYVIGSIFFFLGLLPGVLGFYLIEGHSFMESSLNAISMLSGQPVEPAPATPTGRFFIAIYGLFLQCVFILSIGLVVTPFIHRQLHKWHLEED
>NZ_CP047344.1|WP_072068270.1|2229985_2230423_-|universal-stress-protein
MYKTILVPVDISEDELTKKALQHAVYIAKLEGAKLHLFHAIPDISRFSISYSYHYDMLSSFANKALERVQEQLQELANSIDLPNERVEYSAVFGSARDKVLELAEKINADLIVIGSRRPSISTHLLGSNASGIVAYAKQSVLVVR
>NZ_CP047344.1|WP_115349856.1|2228580_2229384_-|threonine/serine-exporter-ThrE-family-protein
MDNEIMADCTAISQDKQREITKLCIQTALLLLQHGAESMLVEQLSTRLGLALGVHQVESAISANAVVLTTIVNGHCQTSTRKIVDRGINMHVVTEVQHIVILVEHHLADIHEARKRFEHIKPLRYPRWVIIFMIALSCGCFSKLNGGNWDGFLVSAIGGGLGMFVRQVLTHRQMNPLINFCITAFVATSVSGLLLKLSYFQTTATISMAASVLLLVPGFPLINAVADMFKGHVNTGLARWAMATMLTLATCLGVILAMAVWELRDWA
>NZ_CP047344.1|WP_072068269.1|2228116_2228605_-|threonine/serine-exporter
MGVKRLGIITIILTLIEDMILAAIPAVGFAMVFNVPLRALKYCALLGAIGHGSRTVLIMSGMNIEWASFCAAILVGCIGIQWSRWWLAHPKVFTVAAVIPMFPGINAYIAMISVVKLTQIGYSEEIFEALVTNFLKASFIVGALSIGLSLPGLWLYRKRPSV
>NZ_CP047344.1|WP_036912881.1|2227929_2228112_+|hypothetical-protein
MNENMLNLMDELVEITKKHANNEDVKAHASLESENKLRIQIIISDKNELDITLNSLQHAM
>NZ_CP047344.1|WP_115349855.1|2226692_2227676_-|endonuclease-I
MRKILHYTAIVLGLFIFTLNVQAQAPENFTKAKEIAKERIYYDQNQKSQGTIYCGCDWEWVGKSGGRVDLASCGYQVRTQQTRAARIEWEHIVPAWVFGHQRQCWQNGGRANCVKNDPVFGKIEADLHNLAPSIGEVNGDRSNFSFGQLPTQAPYQYGQCRSRVDFASRTFEPRNEVKGQVARVYFYLHDRYNLSMSRQQQQLLMAWDKSYPPTAWEKERDNRIARVVGYHNPFVTGEVKWQLGHKNSGAGLSATNNAPVTKVKTETPKQVSTSQSESIKGNINSKIYHFAHCSGYKTMSDKNAVFFKTENEAIKAGYRLANNCKQP
>NZ_CP047344.1|WP_072068273.1|2234272_2235250_+|porphobilinogen-synthase
MSNEQSIQRLRRLRQSENLRALFQETTLTKNDLALPIFVEEGLDDYQPIKSMPGVVRIPEKRLAYEIERIAKAGIKTVMTFGVSHHLDETGSDAWKSDGLVSRMSRICKDAVPEMIVMSDTCFCEYTSHGHCGVLHGEHVDNDETIYNLGLQAVAAAQAGADFIAPSAAMDGQVAAIRAALDKAGFGDTGIVSYSTKFASALYGPFRDAAGSRLIGDRKTYQMNPMNRREAIRESLIDEQEGADMLMVKPAGAYLDIIRDVRERTLLPLAAYQISGEYAQIKFAALAGAIDEDRVVMETLGSIKRAGADLILSYFALDLAERNLL
>NZ_CP047344.1|WP_072068274.1|2235423_2235888_+|HIT-family-protein
MDNCIFCQIVAGKAPCHKIWEDDHHLAFLSIFPNTKGFTVVIPKKHYPSYAFDLSDEALALLVIATKKVAKILDKTFPDVSRSGMFFEGFGVDHVHSKLSPMHGTGDMTKWAPIENKQKIFFDKYPGYLSSHDFERASDEELAQLASLIRKNNQ
>NZ_CP047344.1|WP_164526382.1|2235998_2236343_-|phosphotyrosine-protein-phosphatase
MNILFICSKNQWRSPTAELLFADREGINTLSAGTRKDARCVVDNELLKWADLVLVMESKHLNRLSAHFPAIMRYKKAHVLGIPDNYRFNDLALIELLEQKVQSYLPMEAKLSTK
>NZ_CP047344.1|WP_164526383.1|2236345_2236564_-|hypothetical-protein
MSTQRDRGWRQCVNRKNKHQEIGCSRVMFKPEKKWSNLYTRSLKMTRAAQLGIEYPRISRSQRRLNALSDSE
>NZ_CP047344.1|WP_072068473.1|2236756_2237509_-|DUF3944-domain-containing-protein
MAYRYDEDLVFLSECSNEELNDLVYLLTHDKDGEKRWTEELTNNSNYKAFYPNHSLYWEEIAAEIQCFGGNTFATMFRGGKGVLYREVLTDVCDKLKVNYNKNSTIEIIENNLLMKIVADALDSMTPEQIKQLGGELGVKNTSGLTAQTLTAGFQAIFRAGGFKSYQLTAIIVNQIMKALIGRGLSFAANGTLMRTMSILAGPVGWAITGIWTAIDIGSAAYRVTIPAVIQVAFLRTQSSAKLANEISFD
>NZ_CP047344.1|WP_072068276.1|2237829_2239107_-|cytosine-deaminase
MLGKNIEQINHARLVGKDGLWRITLKNNKIEAIEPQPEHDFHPDALDAQGGLVHAPFVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLQWQIANGIQHVRTHVDVSDASLTALKAMLEVKEEIKPWVDLQIVAFPQEGILSYPNGEALLEEALKLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHKENMGSRVTASHTTAMHSYNGAYTSRLFRLLRMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLESNINVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCQLMGYSQIDNGLQLISHNSAKTLALTDYGVEVGNGANFIILPADNGFDALRRQVPVRYSIRQGKVIAQTEPAKTEIMLDKPTAINYK
>NZ_CP047344.1|WP_115349861.1|2239096_2240347_-|cytosine-permease
MSQDNNYSQGPVPISARKGGLALTFVMLGLTFFSASMWTGGALGTGLSFNDFFLAVLIGNLLLGIYTAFLGFIGSKTGLTTHLLARYSFGIKGSWLPSFLLGGTQVGWFGVGVAMFAIPVGKATGIDINLLIAISGILMTITVFFGISALTVLSIIAVPAIAILGSYSVYLAVHDMGGLSALMAVKPAQPLDFNLALAMVVGSFISAGTLTADFVRFGRNPKVAVVVAIIAFFLGNTLMFVFGAAGAASLGMADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGLSSKKLSVINGIIGTLCALWLYNNFVGWLTFLSAAIPPVGGVIIADYLMNKARYNTFNVATMQSVNWVALLAVAIGIMAGHWLPGIVPVNAVLGGAISYAVLNPILNRRTARQAEISHAG
>NZ_CP047344.1|WP_164526384.1|2240712_2242392_-|choline-dehydrogenase
MGYDYIIIGAGSAGNVLATRLTEDPEVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYNWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAKLPGLEEWDYLSCLPYFRKAENRDIGANDYHGDKGPVSVTTPKKGNNILFQAMIEAGIQAGYPRTIDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQVKVRKNLTIETHATTDIIEFEGKKAVSVRYFSGENTTPHRVKANREVLLCAGAIASPQILQRSGIGPEKVLNEFNIQPVHVLPGVGENLQDHLEMYLQYECKKPVSLYPALKWYNQPKIGAQWLFQGTGIGASNQFEAGGFIRSSEKFAWPNIQFHFLPVAINYNGTNAVEVHGFQAHVGSMRSPSRGRVKLASTDPHQHPNILFNYMSTEQDWEEFRSAIRITREIMAQSALDAYRGEEISPGKHIQSDEELDAFVRERAETAFHPCGTCKMGTDKMAVVDGDGRVHGIESLRVIDASIMPLIITGNLNATTIMIAEKLADKVRGIKPLSKSQAKYYVAGDQPVRKINLSL
>NZ_CP047344.1|WP_164526385.1|2242430_2243906_-|betaine-aldehyde-dehydrogenase
MPNPPLHKLYIHGGYVDCAQPECEQFEAINPANGEVIAHLQSASEEDINWAVESAKQGQKIWCAMTAMERSRILRRAVDILRERNDELAHLETLDTGKPLSETRYVDIVTGADVLEYYAGLIPALEGEQIPLRETAFAYTRREPLGIVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEMTSLTALKLAEIYTEAGLPKGVFNVVTGKANVGQWLTQHPDIAKVSFTGGIETGKKVMVNASASSLKEVTMELGGKSPLIIFDDADLDTAADIAMMANFYSSGQVCTNGTRVFVPERLKPAFEAKIIERVSRIRIGSPLEMDTNFGPLVSFPHLEKVLNYIELGKTQGARLLYGGHRLLEGNFSQGAYVAPTVFTDCNDDMNITRDEIFGPVMSILSYQTEEEVILRANNSVYGLAAGLVTKNLTTAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGVGRENGLVTLQNYTQIKSIQVELGEFSSVF
>NZ_CP047344.1|WP_072068279.1|2243930_2244533_-|transcriptional-regulator-BetI
MPKIGMQSIRKQQLIQATLAVINEVGMQEASIALIARKAGVSNGIISHYFRDKNGLLEAAMRHIQYQLGFAVAIRLRMLSDATPKLRIQAIVEGNFDTTQTSEAAMKTWLAFWASSMHQPNLNRLQKVNDRRLYSNLSYEFGRVLTKDQARLAAKGLAALIDGLWLRSALSNAPFSLEEAKIITNEYIDMQLTNRSQIKT

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Crispr_ID: NZ_CP047344_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047344_2

2683506-2683591

Orphan

Consensus_repeat	Method
TAAATAATTCAAGGTGTAGCTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047344_2

>merge|NZ_CP047344|2|2683506-2683591|CRISPRCasFinder
TAAATAATTCAAGGTGTAGCTAGTCGACAACGCTGCACCTTAAAATATGACGAGTAAATATTCTAAATAATTCAAGATGTAGCTAG

>NZ_CP047344|2|2|2683506-2683591|CRISPRCasFinder
TAAATAATTCAAGGTGTAGCTAG	TCGACAACGCTGCACCTTAAAATATGACGAGTAAATATTC
TAAATAATTCAAGATGTAGCTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047344.1\|WP_072068621.1\|2677824_2679081_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
NZ_CP047344.1\|WP_164526483.1\|2692300_2693443_-\|4-phosphoerythronate-dehydrogenase-PdxB	unknown	unknown	gnl\|CDD\|185335
NZ_CP047344.1\|WP_164526482.1\|2687211_2688510_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|182774
NZ_CP047344.1\|WP_072068630.1\|2686589_2687222_-\|cell-division-protein-DedD	unknown	unknown	gnl\|CDD\|236940
NZ_CP047344.1\|WP_115350038.1\|2690360_2691245_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP047344.1\|WP_072068626.1\|2681864_2682482_+\|thiol:disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|172475
NZ_CP047344.1\|WP_072068619.1\|2676191_2676335_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP047344.1\|WP_072068632.1\|2688502_2689465_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP047344.1\|WP_072068629.1\|2684365_2685883_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP047344.1\|WP_072068622.1\|2679091_2679379_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP047344.1\|WP_071788551.1\|2675671_2675815_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP047344.1\|WP_164526481.1\|2682546_2683452_+\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP047344.1\|WP_072068633.1\|2689634_2690336_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|182775
NZ_CP047344.1\|WP_072068635.1\|2691244_2692255_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|181205
NZ_CP047344.1\|WP_072068625.1\|2681123_2681666_-\|NUDIX-hydrolase-YfcD	unknown	unknown	gnl\|CDD\|185291
NZ_CP047344.1\|WP_164526480.1\|2680080_2681127_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP047344.1\|WP_072068623.1\|2679409_2679853_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP047344.1\|WP_072068620.1\|2676407_2677631_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|183984
NZ_CP047344.1\|WP_023581692.1\|2685913_2686405_-\|colicin-V-production-protein	unknown	unknown	gnl\|CDD\|182773
NZ_CP047344.1\|WP_072068628.1\|2683664_2684246_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|235677

Protein	Function_ID	Function_description	E-value
NZ_CP047344.1\|WP_072068621.1\|2677824_2679081_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
NZ_CP047344.1\|WP_164526483.1\|2692300_2693443_-\|4-phosphoerythronate-dehydrogenase-PdxB	gnl\|CDD\|185335	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional.	0
NZ_CP047344.1\|WP_164526482.1\|2687211_2688510_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|182774	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional.	0
NZ_CP047344.1\|WP_072068630.1\|2686589_2687222_-\|cell-division-protein-DedD	gnl\|CDD\|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	2.34282e-82
NZ_CP047344.1\|WP_115350038.1\|2690360_2691245_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	3.16231e-150
NZ_CP047344.1\|WP_072068626.1\|2681864_2682482_+\|thiol:disulfide-oxidoreductase	gnl\|CDD\|172475	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional.	5.66691e-97
NZ_CP047344.1\|WP_072068619.1\|2676191_2676335_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	2.19261e-08
NZ_CP047344.1\|WP_072068632.1\|2688502_2689465_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP047344.1\|WP_072068629.1\|2684365_2685883_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP047344.1\|WP_072068622.1\|2679091_2679379_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	8.61546e-30
NZ_CP047344.1\|WP_071788551.1\|2675671_2675815_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	1.66113e-08
NZ_CP047344.1\|WP_164526481.1\|2682546_2683452_+\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	1.75488e-150
NZ_CP047344.1\|WP_072068633.1\|2689634_2690336_-\|DedA-family-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.27479e-149
NZ_CP047344.1\|WP_072068635.1\|2691244_2692255_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|181205	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional.	0
NZ_CP047344.1\|WP_072068625.1\|2681123_2681666_-\|NUDIX-hydrolase-YfcD	gnl\|CDD\|185291	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional.	3.30493e-126
NZ_CP047344.1\|WP_164526480.1\|2680080_2681127_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.83107e-86
NZ_CP047344.1\|WP_072068623.1\|2679409_2679853_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	6.34302e-46
NZ_CP047344.1\|WP_072068620.1\|2676407_2677631_-\|alanine-racemase	gnl\|CDD\|183984	PRK13340, PRK13340, alanine racemase; Reviewed.	0
NZ_CP047344.1\|WP_023581692.1\|2685913_2686405_-\|colicin-V-production-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	3.67242e-99
NZ_CP047344.1\|WP_072068628.1\|2683664_2684246_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|235677	PRK06029, PRK06029, UbiX family flavin prenyltransferase.	1.4212e-121

>NZ_CP047344.1|WP_164526481.1|2682546_2683452_+|TIGR01777-family-protein
MKILITGGTGLIGKALVCELALSNNDITVLSRSPQKVYSHFCNEITCWTQLSDKQNLNEFDAVINLAGEPIADNRWTPAQKQKLINSRCDLTQKLVELIKASDSPPSVFISGSAVGFYGDQGDLQVTEQTPANPEFTHELCAKWESIALEAQTPLTRVCLLRTGIVLSTLGGALPKMSKPFKLGLGGKLGSGKQYMPWIHIDDMVSAIIFLLKTQDAKGAFNLTAPNPVQNKEFTRLLGKAFNRPALMTVPESVLRLVMGESATLVLGGQQAIPEKLLNVGFEFRYPQLEEALKDIITTGK
>NZ_CP047344.1|WP_072068626.1|2681864_2682482_+|thiol:disulfide-oxidoreductase
MIDLYYADTPNGQKITLFLEEAGLPYQLHRIDISKGDQFKPEFLAISPNNKIPAIVDNSPADGGEPLSIFESGAILIYLAEKSGKLISQNLREKTTQLQWLFWQVGGFGPMLGQNHHFTRYATEKVPYAIKRYTEETQRLYSVLEKRLAQSPYLGGQEYSIADIATYTWARLHAHHNIDLANYPAIEKWLNKINQRPAAKKLFGE
>NZ_CP047344.1|WP_072068625.1|2681123_2681666_-|NUDIX-hydrolase-YfcD
MEQEKTALVEWVDIVDDKNEVVAQATRQQMRAENLRHRATYIVVHDGMGKILAQRRTETKDFYPGWLDATAGGVVQQGENLLESARREAEEELGIAGVPFAEHGQFYYDDKSCRVWGSLFSCVSHGPFALQAEEIEEVCWLTPSEITERCDEFTPDSLKALSLWLTRNNSTRLETRETVD
>NZ_CP047344.1|WP_164526480.1|2680080_2681127_+|LacI-family-transcriptional-regulator
MIKTRKRRNTGRVTLQDVAKHAGVGSMTVSRALRTPELVSDKLREKVNQAVEELGYIPNASAGALASAQSHIIAVLLPSFTDKASADFMQSLQQILNRHQYQILVGCYEHQPHKASDVINMLLQSNPAALVVFGSQLSPTHFLNISNANVPVVSVASQSDEQAAISIDCSYEQAAYDLTSHLVTQGRRCIGYIGALQGQRLHHQQITGWSRALLKYYLNAEQSVTTPDPASMAYGRLALTEILLRQPELDAVICSHESIALGMIFECQRRLIKIPQDLAIACLEGSDNSDQISPSLTSIRFDYHKMGKEAGKHLIALLQRLKDEDDNAIFEDTVINYAYRFEIGQSTP
>NZ_CP047344.1|WP_072068623.1|2679409_2679853_-|PTS-sugar-transporter-subunit-IIA
MLKTLLTPDVVQVVPSVSDWREAVKVACQPLVDKGCVEPRYIDAIYKSHEKIGPYYVLGPGIAMPHARPEDGVNQLSLALTIVEQGVEFGADENDPVKLLIVLAATDNDSHINAIMKLAELFDNDKDIQTLFNAKSKADVLAVINNY
>NZ_CP047344.1|WP_072068622.1|2679091_2679379_-|PTS-sugar-transporter-subunit-IIB
MKITVVCGNGLGSSLMMEMSIKSILKDLAVNAEVDHVDLGSAKGTPSDIYVGTRDIAEQLSAQAVNGRVVSLDNMIDKVAMKEKLSVALRELGAL
>NZ_CP047344.1|WP_072068621.1|2677824_2679081_-|PTS-ascorbate-transporter-subunit-IIC
MDFFRFLMSDVLSEPSILVGLIALIGLIAQKKPVTECIKGTVKTIMGFVILGAGAGLVINSLGDFSTIFQHAFGIQGVVPNNEAIVSIAQKSFGKEMALIMFFAMLINILIARLTPWKFIFLTGHHTLFMSMMVAVILATAGLEGAVLVAVGSFVVGVSMVFFPAIAHPYMKKITGSDDVALGHFSTISYVVAGFIGSKFGNKEHSTEEMNVPKSLLFLRDTPVAIAFTMGIIFIITCLFAGDTFVREVSGGKNWFMFSLMQSITFAAGVYIILQGVRMVIAEIVPAFKGISDKLVPNAKPALDCPVVFPYAPNAVLVGFLSSFAAGVIGMFILYALDWTVIIPGVVPHFFVGATAGVFGNATGGRRGAILGAFVQGLLITFLPVFLLPVLGDIGIANTTFSDADFGVIGILLGIIVR
>NZ_CP047344.1|WP_072068620.1|2676407_2677631_-|alanine-racemase
MSFGIRYLALLPLFVITACQQPVNHNPPVTQTAQVQPAIVNNSWIEISRSALDFNVKKVQSLLGDKSSLCAVLKGDAYGHDLSLVAPVMIENEVQCIGVTNNQEFKTVRDLGFQGRLMRVRNATEQEMAQATSYNVEELIGNLDMAKRLDAIAKQQNKVIPIHLALNSGGMSRNGLEVNNNAGLEEAKQIAQLANLKVVGIMSHYPEEDADKVREDLARFKQQSQKVLDVTGLNRKDVTLHMANTFATITVPESWLDMVRVGGIFYGDTIASTDYKRVMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSNAGHALIGGQRVPVLGKTSMNTVIVDITDLKNINSGDEVVFFGKQGNSEITAEEVEDISGALFTEMSILWGATNQRVLVD
>NZ_CP047344.1|WP_072068619.1|2676191_2676335_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MAKFALMGLIAVCMTALCLSLLRHERLCSFNIRSGHTVVQATLSCDK
>NZ_CP047344.1|WP_071788551.1|2675671_2675815_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MTKFALIGLIAVCMTALCLSLLRHERLCSFNIRSGHTVVQATLSCDK
>NZ_CP047344.1|WP_072068628.1|2683664_2684246_-|UbiX-family-flavin-prenyltransferase
MKKLIVGLSGASGAIYGIRLLEILKSVPSVETHLVISQAARRTISLETDYSLKDIHALADVIYDDRDIGASISSGSFRVNGMVILPCSIKSLSGIVHSYTDTLVTRAADVVLKEGRKLVLCVRETPLHLGHLRLMTQASELGAVIMPPVPAFYFQPKTIDDIVNQTVNRVLDQFEIDLPDDLFQRWGGDKPTR
>NZ_CP047344.1|WP_072068629.1|2684365_2685883_-|amidophosphoribosyltransferase
MCGIVGIAGANPVNQSIYDALTVLQHRGQDAAGIATIDGNNGFRLRKANGLVKDVFETRHMLRLKGTIGIGHVRYPTAGSSSASEAQPFYVNSPFGITLAHNGNLTNAHLLRRQLFETARRHINTTSDSEILLNVLAYELDRFDHFPLEPDNIFAAVAAMHKKLRGAYACVALIIGHGLLAFRDPFGIRPLVLGKRTLEDGRHEYMVASESVALDTLGFEFLRDVAPGEAVYITEQGQLFTRQCAENPQLMPCLFEYVYFARPDSFIDKISVYNARLRMGQKLGAKIAKEWEDLQIDVVIPIPETSCDIALEIAHILNKPYRQGFVKNRYVGRTFIMPGQQERRKSVRRKLNANRAEFRDKNVLLIDDSIVRGTTSEQIVELAREAGAKKVYFASAAPEVRFPNVYGIDMPNANELIAHGREVDEIRKLIGADGLIFQDLSDLIAAVQEENPDISQFECSVFDGVYITKDIDQDYLDYLENLRRDDEHKIRDQNEIENLEIYNEG
>NZ_CP047344.1|WP_023581692.1|2685913_2686405_-|colicin-V-production-protein
MVWIDYAIIAIIGFSALVSLIRGFVREALSLITWGCGFFVASQFYPYLAVYFTRFEDELVRNGIAIVTLFIATLIVGAVVNYVISSLVQRTGLSGTDRVLGVCFGALRGVLIVSALLFVLGAFTPMADSADWQRSELIPQFNHIIRWFFDYLQNASSFVSERI
>NZ_CP047344.1|WP_072068630.1|2686589_2687222_-|cell-division-protein-DedD
MASKFQNRLVGAVVLVAVGVIFLPALLDGDKKYNEDQFAAIPLVPKPGDEQEIESIAPIEQTTTPSTPSEGASEAMLSEAVTGVEQSTATPPQPPTVVPVTPPVQPTPVPPVVTPPVQPPAPPVQETKPPKGEAWVVQLGALKNAAKVEEIIAKMHFSGYPVYTVPARPVAGQMTRIYIGPSASKSELQAILPHLNELTGLQGEVRAYKP
>NZ_CP047344.1|WP_164526482.1|2687211_2688510_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MSNIITAPKATSPLSVWLSYLEHLHSSAIDMGLERVGKVGKILNVLRPAPKVITVSGTNGKGTTCHMLESILMASGLKVGVYSSPHLVRYTERVRIQGKELSEGAFCEVFAEIEQARGDISLTFFEYGTLAALKLFQQAQLDVVILEVGLGGRLDATNIVDADIAAITSIALDHTDWLGADREHIGHEKAGIFRANHYAVVGEPDMPQSIAQVADEKHATLFCRGADWSFAIDGNHWHWHCADCEFDALPIPNIPLANAATAMGVIRCLLKSDDNVSQAITHQSIIEGMSRAQLPGRFQVISQHPLVIFDVAHNPHAAGYLAEKLSQLPRKSDTKVRIVVGMLGDKDIAGTLACLMPLTDSWYVAPLNEFRGASADVLAQHLENPSVFESVETAWKQAMSDANPNDIVVVCGSFHTVAHVMELLEKESVGGE
>NZ_CP047344.1|WP_072068632.1|2688502_2689465_-|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta
MSWIEKILNKSTITSSRKANIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRISARRRLETFLDTGSTTELGSELEPKDILKFRDSKKYKDRISAAQKQTQEKDALIVMKGTLKKMPVVAASFEFAFMGGSMASVVGARFVRAVEQALEDNCPLVCFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVMTDPTMGGVSASLAMLGDINVAEPKALIGFAGPRVIEQTVREKLPAGFQRSEFLLEKGAIDMIVRRPEMRDELAELLAKLTQYDLVEDEDEIIGEEMIADEIESTDNEPEINIETNKKEDV
>NZ_CP047344.1|WP_072068633.1|2689634_2690336_-|DedA-family-protein
MEILTQFVDLIKFLIDFILHIDAHLAELVAQYGTWVYAILFLIVFCETGLVVTPFLPGDSLLFVAGALASLDTNDVNVHIIVLLLLCAAILGDAVNYSIGRLFGEKLFSKPNSRIFRREYLDKTHAFYEKHGGKAIILARFVPIIRTFAPFVAGMGKMSYRHFAFYNVTGAIAWVLLFTYAGYFFGDLDIVQKNLKLLIVAIIVISILPGVIEIIRHRRASAKAKKENDSKEV
>NZ_CP047344.1|WP_115350038.1|2690360_2691245_-|tRNA-pseudouridine(38-40)-synthase-TruA
MNAPVSAEVTEQPLTESTVISESTTIKIALGIEYDGSRYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQVVHFETTAHRKDPAWTMGVNTHLPADIAVRWVKTVSDDFHARFSATARRYRYVIFNHRYRPAILSSGVTHFHYPLDAGRMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHVNVSRYGDYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDITWMAELLALKDRTKAAATAKANGLYLVAVDYPEHFELPKPAMGPLFLADNPIEISQS
>NZ_CP047344.1|WP_072068635.1|2691244_2692255_-|aspartate-semialdehyde-dehydrogenase
MGEGWNIAVVGATGAVGEAILELLQEREFPIGELTAIASEDSIGKSVRVNSKSVAVQGIHNIEWADIQLAFFAASTEISAQYAQQAADSGCIVIDCSGVFAMDWDVPLIVPGVNSSMLAEYRTRNIVSIADSMVSQLLRAINPLTEAAGLSRLSVTNLMSVSRLGKQAVDELAGQSARLLNGVPPELGRFNKQLAFNILPLMVDDEGSVEEERRMVDQIRKILQDEGLPISVTTLQAPVFYGNAQSVQLETSRPMGSDEARETLQENEDLSISDENDFPTQVTDASGNVSLNLGCFRNDYGMPEALQFWSVADNVRFGGALMAVEVAEQLMQEQFY
>NZ_CP047344.1|WP_164526483.1|2692300_2693443_-|4-phosphoerythronate-dehydrogenase-PdxB
MKILVDENMPYAEQLFRQLGEVKAVSGRPLPIDELNDSDALMVRSITKVNESLLSGKPVRFVGTATAGFDHVDIAWLEQQKIGFSSAPGCNAIAVVEYVFSALMMLAEQDGFQLTDKVVGIVGVGNVGGRLATRLRALGVNVLLCDPPRADNGDNEEFHSLETLLEKADILTFHTPLNKSGPYKSYHLINESNLEKLPEGRILINASRGEVVDNQALLSALEKGKALRVILDVWEPEPDLSIELLNKVDIGTPHIAGYTLEGKARGTTQVFEAYCDFIGRPQKVELSTLLPAPTISTISVQGELTQTLLKQLIHLVYDVRRDDAPLRKVAGIKGEFDKLRKFYPVRREWSSLHVICDNQTTANTLNAIGFSATYKSAAHK

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Crispr_ID: NZ_CP047344_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047344_3

4261243-4261382

Orphan

Consensus_repeat	Method
CCCAGTTCCCAACTATTTTGTCA	PILER-CR

2 spacers

TnsE_C

The CRISPR arrays of NZ_CP047344_3

>merge|NZ_CP047344|3|4261243-4261382|PILER-CR
AGTTCCAAACTATTTTGTCATTTTTAATTTTCGTATTAGCTTACGACGCTACACCCAGTTCCCATCTATTTTGTCACTCTTCCCTAAATAATCCTTAAAAACTCCATTTCCACCCCTCCCAGTTCCCAACTATTTTGTCC

>NZ_CP047344|3|1|4261243-4261382|PILER-CR
AGTTCCAAACTATTTTGTCATTT	TTAATTTTCGTATTAGCTTACGACGCTACACCC
AGTTCCCATCTATTTTGTCACTC	TTCCCTAAATAATCCTTAAAAACTCCATTTCCACCCCTCCC
AGTTCCCAACTATTTTGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047344.1\|WP_164526888.1\|4273227_4276929_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|377509
NZ_CP047344.1\|WP_115351340.1\|4264409_4265321_-\|N-acetylglucosamine-kinase	unknown	unknown	gnl\|CDD\|183967
NZ_CP047344.1\|WP_072070516.1\|4263154_4263718_+\|acetate-uptake-transporter	unknown	unknown	gnl\|CDD\|182625
NZ_CP047344.1\|WP_164526886.1\|4261458_4261908_-\|metal-binding-protein	unknown	unknown	gnl\|CDD\|225564
NZ_CP047344.1\|WP_000251879.1\|4253566_4255183_+\|transposase	TnsE_C	TnsE	gnl\|CDD\|376049
NZ_CP047344.1\|WP_001206315.1\|4257205_4257994_-\|ANT(3'')-Ia-family-aminoglycoside-nucleotidyltransferase-AadA1	unknown	unknown	gnl\|CDD\|184296
NZ_CP047344.1\|WP_000119696.1\|4256200_4256572_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047344.1\|WP_000704156.1\|4258051_4258576_-\|streptothricin-N-acetyltransferase-Sat2	unknown	unknown	gnl\|CDD\|366181
NZ_CP047344.1\|WP_072070509.1\|4268171_4268570_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047344.1\|WP_072070507.1\|4270864_4273216_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	unknown	unknown	gnl\|CDD\|236851
NZ_CP047344.1\|WP_000777554.1\|4258670_4259144_-\|trimethoprim-resistant-dihydrofolate-reductase-DfrA1	unknown	unknown	gnl\|CDD\|238127
NZ_CP047344.1\|WP_164526887.1\|4268741_4270862_+\|UDP-forming-cellulose-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|274400
NZ_CP047344.1\|WP_001444089.1\|4256632_4257130_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047344.1\|WP_000071896.1\|4259475_4260012_+\|class-2-integron-integrase-IntI2	unknown	unknown	gnl\|CDD\|131303
NZ_CP047344.1\|WP_072070513.1\|4262401_4262794_-\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP047344.1\|WP_000497519.1\|4260126_4260453_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|131303
NZ_CP047344.1\|WP_001353740.1\|4260640_4260880_-\|DUF1819-family-protein	unknown	unknown	gnl\|CDD\|378066
NZ_CP047344.1\|WP_072070512.1\|4263737_4264322_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP047344.1\|WP_072070510.1\|4265478_4266030_-\|NADAR-family-protein	unknown	unknown	gnl\|CDD\|378035
NZ_CP047344.1\|WP_001271300.1\|4255413_4255791_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047344.1\|WP_164526888.1\|4273227_4276929_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|377509	pfam05420, BCSC_C, Cellulose synthase operon protein C C-terminus (BCSC_C). This family contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown.	1.61715e-127
NZ_CP047344.1\|WP_115351340.1\|4264409_4265321_-\|N-acetylglucosamine-kinase	gnl\|CDD\|183967	PRK13310, PRK13310, N-acetyl-D-glucosamine kinase; Provisional.	6.91912e-164
NZ_CP047344.1\|WP_164526886.1\|4261458_4261908_-\|metal-binding-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	3.46123e-29
NZ_CP047344.1\|WP_072070512.1\|4263737_4264322_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.91141e-12
NZ_CP047344.1\|WP_001206315.1\|4257205_4257994_-\|ANT(3'')-Ia-family-aminoglycoside-nucleotidyltransferase-AadA1	gnl\|CDD\|184296	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional.	1.61477e-174
NZ_CP047344.1\|WP_072070516.1\|4263154_4263718_+\|acetate-uptake-transporter	gnl\|CDD\|182625	PRK10659, PRK10659, acetate uptake transporter.	8.96538e-97
NZ_CP047344.1\|WP_072070507.1\|4270864_4273216_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	gnl\|CDD\|236851	PRK11114, PRK11114, cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB.	0
NZ_CP047344.1\|WP_000777554.1\|4258670_4259144_-\|trimethoprim-resistant-dihydrofolate-reductase-DfrA1	gnl\|CDD\|238127	cd00209, DHFR, Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.	3.39419e-57
NZ_CP047344.1\|WP_000704156.1\|4258051_4258576_-\|streptothricin-N-acetyltransferase-Sat2	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.87486e-19
NZ_CP047344.1\|WP_164526887.1\|4268741_4270862_+\|UDP-forming-cellulose-synthase-catalytic-subunit	gnl\|CDD\|274400	TIGR03030, Cellulose_synthase_UDP-forming, cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.	0
NZ_CP047344.1\|WP_000071896.1\|4259475_4260012_+\|class-2-integron-integrase-IntI2	gnl\|CDD\|131303	TIGR02249, Integrase/recombinase_E2_protein., integron integrase. Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family (pfam00589) that also includes recombinases XerC (TIGR02224) and XerD (TIGR02225), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Other].	3.54716e-72
NZ_CP047344.1\|WP_072070513.1\|4262401_4262794_-\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	3.58872e-44
NZ_CP047344.1\|WP_000497519.1\|4260126_4260453_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|131303	TIGR02249, Integrase/recombinase_E2_protein., integron integrase. Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family (pfam00589) that also includes recombinases XerC (TIGR02224) and XerD (TIGR02225), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Other].	2.82591e-45
NZ_CP047344.1\|WP_001353740.1\|4260640_4260880_-\|DUF1819-family-protein	gnl\|CDD\|378066	pfam08849, DUF1819, Putative inner membrane protein (DUF1819). These proteins are functionally uncharacterized. Several are annotated as putative inner membrane proteins.	2.15941e-15
NZ_CP047344.1\|WP_072070510.1\|4265478_4266030_-\|NADAR-family-protein	gnl\|CDD\|378035	pfam08719, DUF1768, Domain of unknown function (DUF1768). This is a domain of unknown function. It is alpha helical in structure. The GO annotation for this protein suggests it is involved in nematode larval development and has a positive regulation on growth rate.	7.85516e-76
NZ_CP047344.1\|WP_000251879.1\|4253566_4255183_+\|transposase	gnl\|CDD\|376049	pfam18623, TnsE_C, TnsE C-terminal domain. The bacterial transposon Tn7 facilitates horizontal transfer by directing transposition into actively replicating DNA with the element-encoded protein TnsE. Structural analysis of the C-terminal domain of TnsE identified a central V-shaped loop that toggles between two distinct conformations. It is suggested that a conformational change within the C-terminal domain of TnsE underlies target site selection by regulating stable engagement of the target DNA while providing a signal for activating transposition.	6.8797e-67

>NZ_CP047344.1|WP_001353740.1|4260640_4260880_-|DUF1819-family-protein
MTPFRYNSDLTSGSLQTRECRIITGLLLQELDEAAWDKAMYKENVLQKRTQSTVRRISSALRKRLEHLSSDFWAFAFLC
>NZ_CP047344.1|WP_000497519.1|4260126_4260453_+|tyrosine-type-recombinase/integrase
MFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQHFAGTTSPADGLMLLINQ
>NZ_CP047344.1|WP_000071896.1|4259475_4260012_+|class-2-integron-integrase-IntI2
MSNSPFLNSIRTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAINTQKIALNALAFLYNRFLQQPLGDIDYIPASKPRRLPSVISANEVQRILQVMDTRNQVIFTLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAIK
>NZ_CP047344.1|WP_000777554.1|4258670_4259144_-|trimethoprim-resistant-dihydrofolate-reductase-DfrA1
MKLSLMVAISKNGVIGNGPDIPWSAKGEQLLFKAITYNQWLLVGRKTFESMGALPNRKYAVVTRSSFTSDNENVLIFPSIKDALTNLKKITDHVIVSGGGEIYKSLIDQVDTLHISTIDIEPEGDVYFPEIPSNFRPVFTQDFASNINYSYQIWQKG
>NZ_CP047344.1|WP_000704156.1|4258051_4258576_-|streptothricin-N-acetyltransferase-Sat2
MKISVIPEQVAETLDAENHFIVREVFDVHLSDQGFELSTRSVSPYRKDYISDDDSDEDSACYGAFIDQELVGKIELNSTWNDLASIEHIVVSHTHRGKGVAHSLIEFAKKWALSRQLLGIRLETQTNNVPACNLYAKCGFTLGGIDLFTYKTRPQVSNETAMYWYWFSGAQDDA
>NZ_CP047344.1|WP_001206315.1|4257205_4257994_-|ANT(3'')-Ia-family-aminoglycoside-nucleotidyltransferase-AadA1
MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQPVILEARQAYLGQEDRLASRADQLEEFVHYVKGEITKVVGK
>NZ_CP047344.1|WP_001444089.1|4256632_4257130_-|hypothetical-protein
MRDLLKVVLSLVLAMASGQALADLPIVLVDEARLPYDYSPSNYDISPSNYDNSISNYDNSPSNYDNSESNYDNSSSNYDNSRNGNRRLIYSANGSRTFAGYYVIANNGTTNFFSTSGKRMFYTPKGGRGVYGGKDGSFCGALVVINGQFSLALTDNGLKIMYLSN
>NZ_CP047344.1|WP_000119696.1|4256200_4256572_-|hypothetical-protein
MSYEPPRDGYTNGYIVDVMYDNRPSKYPAVFRTYVRIPDYVELDNAEELADAIIREVELKEAWLTRVLGNSADPDASVGKWDRRLAQCGGIDEMSSGVQATYFSPNGQLVGLVAYIDAEWMDE
>NZ_CP047344.1|WP_001271300.1|4255413_4255791_-|hypothetical-protein
MSAAKALAYALCDKLESKKVDEVVRNLVSSGWNIREVAWEASSFDHEMPYFDTGRDFDIGFPDTLSSKIEFLTANGSIVQARARLHFKQALIFAKASKHVAALKNSLDYYYGSSVIPPQNHGGYL
>NZ_CP047344.1|WP_000251879.1|4253566_4255183_+|transposase
MVRLATFNDNVQVVHIGHLFRNSGHKEWRIFVWFNPMQERKWTRFTHLPLLSRAKVVNSTTKQINKADRVIEFEASDLQRAKIIDFPNLSSFASVRNKDGAQSSFIYEAETPYSKTRYHIPQLELARSLFLINSYFCRSCLSSTALQQEFDVQYEVERDHLEIRILPSSSFPKGALEQSAVVQLLVWLFSDQDVMDSYESIFRHYQQNREIKNGVESWCFSFDPPPMQGWKLHVKGRSSNEDKDYLVEEIVGLEINAMLPSTTAISHASFQEKEAGDGSTQHIAVSTESVVDDEHLQLDDEETANIDTDTRVIEAEPTWISFSRPSRIEKSRRARKSSQTILEKEEATTSENSNLVSTDEPHLGGVLAAADVGGKQDATNYNSIFANRFAAFDELLSILKTKFACRVLFEETLVLPKVGRSRLHLCKDGSPRVIKAVGVQRNGSEFVLLEVDASDGVKMLSTKVLSGVDSETWRNDFEKIRRGVVKSSLNWPNSLFDQLYGQDGHRGVNHPKGLGELQVSREDMEGWAERVVREQFTH
>NZ_CP047344.1|WP_164526886.1|4261458_4261908_-|metal-binding-protein
MKKLLLTSIIAISAFTSTAYASNHNVVEVYKTESCGCCTLWADGVNEAGFNVKVNIVSETQLMEKYQQAGVPNNLLSCHLATYQGKDLIGHIPVDSLKNIDLVDKSKSGIAVAGMPAGSLGMYAGDYKEPYQVIAFDKSGTQSLFKSYN
>NZ_CP047344.1|WP_072070513.1|4262401_4262794_-|YgiW/YdeI-family-stress-tolerance-OB-fold-protein
MKKILVLLIGSTLAFASQANTTHQGGFQGSIQAPTQQGGFKGPSISETTVAKAKDLSDDTWVILTGKITKKIGDELYVFEDSTGGINVDIDNKRWRGQTVTPDNTVRIEGKVDKEWTSTEIDVKQITIIK
>NZ_CP047344.1|WP_072070516.1|4263154_4263718_+|acetate-uptake-transporter
MTNERIANPGPLGLMGFGMTTILLNIHNAGFFPVVSVIMSMGIFYGGIAQVIAGIFEFKKGNTFGATAFTSYGFFWITLVGIWLLPVMGLSEPTTPVFLGVFLALWGIFTFFMFIGTLKANRALQFVFLSLTILFALLAIGNITGNALILKIAGFEGIICGASAFYLAMAEVLNEMYGRTILPIGHK
>NZ_CP047344.1|WP_072070512.1|4263737_4264322_-|rhomboid-family-intramembrane-serine-protease
MDKIWFKKRLTFLGGLTITLILLQLIGSLLPISLLQWGIIPRTGEGLIGIFIAPFVHGSWSHLFSNLLPLLILSFLSMTQSLREYVLSSLFIIIVSGLLVWIFGRSAIHVGASGWIFGLWSLLIAHAFTRRKIIDIVIALFVLFYYGSMAYGLIPGQLGVSTESHIAGVVAGLFYAWCARKLVRRKSQVIEVAK
>NZ_CP047344.1|WP_115351340.1|4264409_4265321_-|N-acetylglucosamine-kinase
MYYGFDMGGTKIELAVFDKDLTQVWQKRVPTPKNDYQALLNVFKELTLEADNELGCKGKIGVGVPGIVNAKEGTVFTTNVPAAKYKPMVHDLAHILNRPVKVENDANCFALSEAWDPEFRHHPSVLGLILGTGVGGGFVVDGKVLSGKNGIAGEIGHMNLNVDADNVIGDTMPKIICGCGKKACFETYLSGRGFERMYKAFNHAPQRAVDIVEQYYAGDKKTEEHVDRYMKVLAIYLSNILTVLDPHLIVIGGGLSQFNALYDQLPEYLSHCVYGNAQIPAIEKARHGDAGGARGAACLNLLD
>NZ_CP047344.1|WP_072070510.1|4265478_4266030_-|NADAR-family-protein
MDLEQLKKDFRTGKKIKFVYFWGHRSKTNEVTKSCFSQWYPAPFILDDVRYISAEHYMMAEKAKLFNDIEIRERIIATSNPGTAKALGREVKGFSQEIWEQQRMDIVIRANIAKFSQNNALGTFLISTGNRVLVEASPVDKIWGVGLSEQDKEISNPLLWNGLNLLGFALMKVRSVLMEGSHQ
>NZ_CP047344.1|WP_072070509.1|4268171_4268570_+|hypothetical-protein
MYDDISNLKDKFQEDAFAFQEFSSSVTQDVDNKIEPIIISNKDNNKISNLSNNTFSETSLSVKNELKQPITVSPTPSYHQDALVVKAKKDNLIKSKKNLLADNKIFDSKETDRVHAHENISLKDILSFIASV
>NZ_CP047344.1|WP_164526887.1|4268741_4270862_+|UDP-forming-cellulose-synthase-catalytic-subunit
MNKIFKTLITAFLLITMFSLIVMPMSAEQQYIFGIINILLLFVIGFKKSKKRLLTMVFISLLMSTRYLYWRATNTLNFNTSIEAVLGSGLFMAEIYSWIILVLGYFQTSWPLNRKIAPLPKDISQWPTVDIYIPTYNESLDVVRDTVLAAQAIDYPQDKMKVYILDDGSREEFKQFAGDVGVTYIEREVHDHAKAGNLNHAMGLTDGELICVFDCDHISTRIFLQATVGSFLEDPKLALIQTPHYFYSSDPFERNLSAAKDAPHEGALFYGPVQRGNDNWNATFFCGSCAVMRRSALEEIGGIAVETVTEDAHTALKLQRLGWNSAFIDIPLAAGLATERLALHVNQRIRWARGMTQIFRVDNPMLGRGLTFPQRLCYLNAMLHFQYGLPRIIFLTAPLLFMLFNLNIIASSASMIFAYALPHLIMSVYVNSKNIGKYRYSFWGEIYETVMAFSLVLPTLLSLVSPKLGKFNVTDKGDLLDKSYMDYLTVRPLIITALLLITGISWVVIRYLLNDFQGIDPLVIVLNLTWATYSLFIILASIAVGKETRQIRKHTRIKASLPITLHFDDGAELSTTTEDISMGGVRIAVNKMAELRQRNVTSITLNVQRDEVSVPAEMVSLENNQLRLEFLPINLNVRRKLVRIIFGRADAWIHQTDYKDKPFKELAGITRCIFELFFGRRQKVKPVATRTKAKTSLSVQSINGDD
>NZ_CP047344.1|WP_072070507.1|4270864_4273216_+|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB
MKKKLTLMLSLTAIAIASINLSQAATGMLELGGEILPDPTSYTQSPVQQNANNPIRMADVALSEARNIEEQLTLAQMGNPSPIVLSGRRLLSGVTFNMANDLFIDSATLTMKVKASQGLVQSDQTLHLMLNGQPMGFLPLEEGGQEHEYVLEIPEMMLTNVNNLSFRLASRDALDENQCTPPLTEGLSLVISPDSSLDYRGRWINGGYSLERLPLPFFDPDRMTATSLPIILSDKPDDAEVTTAAIAASWFGSFSHDIKQVDLPVLMNQLPESDGILVGYSGQTIAGITLPSGNSGQLTIVDNPVDPVFKLLLISGDNEKSLRQAVWALNNGKLPQNDHLVVPSQTLAVRNDYDAPRWLNTNKPVTLGQIANGSDDFSRQGINHAPNQFSFRVSPDLFWWDGDALPLELKYVFPHSDKLNSRRSSLIASLNNQFLGALYPARSEPLGMLRQWLGMESEQQNSTLYLNPRQIYSQNQLQFYFDLREPDDSPCILTDGSSLISQIDPQSTLQFKNTWHYSRMPNLAYFSGASFPFSRRADFSQTTLLLPENPTTEELYTLVNLMARSGYSTGTPVSHTSVFLGAKALEKNNLSQQDILAIGSLSSDGFLPARFSQQAFSFLNKNIEIKSQSLLEKAKGWIAGDYLSQSGDAANYLSSMNNWRGMVSFISPWASDRVVVLVTAKGNDSIKTIINDLNLAEINAAIKGDITLISGKDTVRSFHLGEHFSQGDLPLLQQFLWYSSRHVYLLGLLAVGFCALTGLVTYYWLQRRSTRRLHQISQHRSGK
>NZ_CP047344.1|WP_164526888.1|4273227_4276929_+|tetratricopeptide-repeat-protein
MKNHALNIIVKVIYAGCILGASSQVQATANDVNTTATDPNIVSSLIEQANYWHGRAHDARAVEALQKVLIMESNNQDALYLMAFFTAQQGNEKQATYWREKLAQVAPQDPRIDGLKNIRSSQFSDQQLGYARELAKKGQHEEAIKAYQRLFVSSEPPETLALEYYQTMAGVPAMLPQAISGLKQRAALMPDNKETQRALGLTLTYNEETRREGITILGNVSGDESAKKGLRQALLWLNVRPDDEVLYKTYLQANPNDKAVAEHFQGAIQGNARQAGYTALNKGKLKEAEGYFKQALAADNNDAQALAGLGYTALRSGDLATGQRLLNQAAQSGGEQGSKWKQQAEDAGFYAQLRDAQQRAKQGNIQQALDKLAPLTGASGEKGLSANLLQADLLRKQGNLPAAHQLLAGLYQQNSRNEKVISAYYYLLVQEGQNTKAEQLLAQQSASLRQKLTANTDPSETLRREAQKALENGNRVQARQLLTQAQRKNPQNNWVYLDLARLMAADGDSTGAKNIISQLQNRKTRDTDYVASLFYVEQKEWDKVFNLLSSHNQQTEAEKELLQRARFHRQLAQAEHYRQAGNLVAVRNTLRPLINQIADYPNDVGELAERLVSSGLNDEALQLVENDIAKGTKGSVGNYAGHINVLNELGRYTQASSLINDPALQQETPIVEKKRLEVATKVAQADNLREKGEIKAAYDTLVVALKSSPNDPDLLMALSRVYLAQSMPEQSDKILSYLEKEQGKDTKLIQAQIEVALAQQDGRKAQQLLQQIPSSSQPAYLLQAAQIAQLNGENRKALTLLRSAQWQNTDDSVLNTSAGQLRALESDNTAIAGSIYERKEMASVQRSIRELEEKVSPWVQGGVAVRHRNGDKGLSNVTEISAPISISSVPGEEFRWEFNVTPVSMTSGSVSGERANRFGTGQLQHAERFAKNSDNHDEKNKINADEAGSQRASGVELGLRLSDKNVSFDVGSTPLGKDTATVVGGLTYSPKIGQNGQLTLTAERRAIKDSLLSYMGRTDPMTGESWGRVTRNGAKAQYAWDDGKVGAYVGGGFYNYEGKSVASNDEVKAWMGSYAKFYKDDQQEVKAGVHVDYMNFRNNQNNFSLGHGGYFSPQDYVSVSLPVAYTRRFEKGEVSLNGAIGIQSYKQKGSDYFPTHSYMQDALNKHNASDPRIKSRYEEKDETNITYRLGLDAKYYLNKETELGVSLSHDTSGDYAEDNMWLHLKYTPDFLSK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_KX774387	Providencia rettgeri strain 30905 plasmid pC131, complete sequence	10387-10419	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP053895	Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence	72648-72680	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_KU963389	Escherichia coli strain ECO37 plasmid ECO37P1, complete sequence	15133-15165	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP047288	Proteus cibarius strain G11 plasmid p152, complete sequence	62060-62092	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP044485	Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence	28402-28434	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP025853	Escherichia coli strain 510016 plasmid p510016_36, complete sequence	25816-25848	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_KT754165	Shigella dysenteriae 1 strain 93-531-1 plasmid p93-531-1, complete sequence	23240-23272	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP053372	Proteus cibarius strain G32 plasmid pG32-177, complete sequence	57315-57347	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP024247	Escherichia coli O27:H7 strain B4103-1 plasmid unnamed2	64739-64771	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP053043	Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence	95158-95190	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	JX469830	Uncultured bacterium plasmid pG527, complete sequence	41349-41381	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP013819	Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence	10767-10799	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP025925	Escherichia coli strain 520873 plasmid p520873_36, complete sequence	13633-13665	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP025875	Escherichia coli strain 503458 plasmid p503458_37, complete sequence	10830-10862	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP013795	Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence	10767-10799	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP023380	Escherichia coli strain 127 plasmid p43, complete sequence	15396-15428	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP011314	Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence	172056-172088	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NC_008357	Pseudomonas aeruginosa plasmid pBS228, complete sequence	68063-68095	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP027138	Escherichia coli strain AR_0369 plasmid unnamed2	74789-74821	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP022673	Shigella sonnei strain 866 plasmid p866, complete sequence	78315-78347	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP045128	Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence	89271-89303	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_LT985250	Escherichia coli strain 170 plasmid RCS38_p, complete sequence	152291-152323	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_MK360096	Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence	17850-17882	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP053897	Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence	75880-75912	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_MF150120	Klebsiella pneumoniae strain A64477 plasmid pKP64477d, complete sequence	40084-40116	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_KX756453	Klebsiella pneumoniae strain 1194/11 plasmid pKP1194a, complete sequence	42453-42485	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NC_015472	Escherichia coli plasmid pECTm80, complete sequence	13464-13496	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP013800	Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence	12090-12122	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	MG516911	Proteus mirabilis plasmid pPm60, complete sequence	57128-57160	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP003997	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13d, complete sequence	42619-42651	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP054380	Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence	38153-38185	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NC_002525	Escherichia coli K-12 plasmid R721, complete sequence	10525-10557	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	49215-49247	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP034054	Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence	140941-140973	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP047114	Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence	46467-46499	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP034046	Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed1, complete sequence	150963-150995	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP027700	Klebsiella pneumoniae strain KP30835 plasmid unnamed5, complete sequence	7471-7503	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP053899	Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence	116699-116731	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_MK264770	Klebsiella pneumoniae strain KP89 plasmid pKP89, complete sequence	42620-42652	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_KX774387	Providencia rettgeri strain 30905 plasmid pC131, complete sequence	10443-10483	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_MF150120	Klebsiella pneumoniae strain A64477 plasmid pKP64477d, complete sequence	40020-40060	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP053895	Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence	72704-72744	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_KX756453	Klebsiella pneumoniae strain 1194/11 plasmid pKP1194a, complete sequence	42389-42429	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_KU963389	Escherichia coli strain ECO37 plasmid ECO37P1, complete sequence	15189-15229	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP047288	Proteus cibarius strain G11 plasmid p152, complete sequence	62116-62156	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NC_015472	Escherichia coli plasmid pECTm80, complete sequence	13400-13440	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP044485	Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence	28458-28498	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP025853	Escherichia coli strain 510016 plasmid p510016_36, complete sequence	25872-25912	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_KT754165	Shigella dysenteriae 1 strain 93-531-1 plasmid p93-531-1, complete sequence	23296-23336	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP013800	Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence	12026-12066	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP053372	Proteus cibarius strain G32 plasmid pG32-177, complete sequence	57371-57411	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP024247	Escherichia coli O27:H7 strain B4103-1 plasmid unnamed2	64795-64835	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP053043	Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence	95214-95254	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	MG516911	Proteus mirabilis plasmid pPm60, complete sequence	57064-57104	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	JX469830	Uncultured bacterium plasmid pG527, complete sequence	41405-41445	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP013819	Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence	10823-10863	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP003997	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13d, complete sequence	42555-42595	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	CP025925	Escherichia coli strain 520873 plasmid p520873_36, complete sequence	13689-13729	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	CP025875	Escherichia coli strain 503458 plasmid p503458_37, complete sequence	10886-10926	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP013795	Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence	10823-10863	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	CP054380	Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence	38089-38129	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NC_002525	Escherichia coli K-12 plasmid R721, complete sequence	10461-10501	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP023380	Escherichia coli strain 127 plasmid p43, complete sequence	15452-15492	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP011314	Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence	172112-172152	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NC_008357	Pseudomonas aeruginosa plasmid pBS228, complete sequence	68119-68159	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP027138	Escherichia coli strain AR_0369 plasmid unnamed2	74845-74885	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP022673	Shigella sonnei strain 866 plasmid p866, complete sequence	78371-78411	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	49151-49191	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP034054	Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence	140877-140917	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP047114	Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence	46403-46443	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP034046	Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed1, complete sequence	150899-150939	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP045128	Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence	89327-89367	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP027700	Klebsiella pneumoniae strain KP30835 plasmid unnamed5, complete sequence	7407-7447	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_LT985250	Escherichia coli strain 170 plasmid RCS38_p, complete sequence	152347-152387	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_MK360096	Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence	17906-17946	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP053899	Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence	116635-116675	0	1.0
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_MK264770	Klebsiella pneumoniae strain KP89 plasmid pKP89, complete sequence	42556-42596	0	1.0
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052804	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence	113091-113123	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP038508	Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence	228634-228666	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052788	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence	321488-321520	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052786	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence	10079-10111	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052838	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence	13470-13502	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP051676	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence	201786-201818	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052779	Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence	212524-212556	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052832	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence	277011-277043	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	MN310378	Klebsiella pneumoniae strain A2293 plasmid pA2293-Ct2, complete sequence	73380-73412	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052806	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence	282696-282728	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052818	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence	1788-1820	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_MH476540	Klebsiella pneumoniae strain KP1276 plasmid pIA/C-KLUC, complete sequence	87104-87136	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052795	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence	166287-166319	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP047882	Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence	264306-264338	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052802	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence	197576-197608	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052840	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence	9544-9576	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052836	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence	222743-222775	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052828	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence	8856-8888	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052826	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence	292607-292639	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP016409	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence	299316-299348	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP016407	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence	299920-299952	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP016413	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence	295999-296031	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_CP016411	Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence	293612-293644	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	CP052814	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence	281790-281822	2	0.939
NZ_CP047344_3	3.1\|4261266\|33\|NZ_CP047344\|PILER-CR	4261266-4261298	33	NZ_MG764552	Klebsiella pneumoniae strain A1763 plasmid pA1763-Ct2, complete sequence	61314-61346	2	0.939
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_CP053897	Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence	75936-75976	2	0.951
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	MN310378	Klebsiella pneumoniae strain A2293 plasmid pA2293-Ct2, complete sequence	73436-73476	2	0.951
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_MH476540	Klebsiella pneumoniae strain KP1276 plasmid pIA/C-KLUC, complete sequence	87160-87200	2	0.951
NZ_CP047344_3	3.2\|4261322\|41\|NZ_CP047344\|PILER-CR	4261322-4261362	41	NZ_MG764552	Klebsiella pneumoniae strain A1763 plasmid pA1763-Ct2, complete sequence	61250-61290	2	0.951

1. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_KX774387 (Providencia rettgeri strain 30905 plasmid pC131, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

2. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP053895 (Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

3. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_KU963389 (Escherichia coli strain ECO37 plasmid ECO37P1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

4. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP047288 (Proteus cibarius strain G11 plasmid p152, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

5. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP044485 (Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

6. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP025853 (Escherichia coli strain 510016 plasmid p510016_36, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

7. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_KT754165 (Shigella dysenteriae 1 strain 93-531-1 plasmid p93-531-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

8. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP053372 (Proteus cibarius strain G32 plasmid pG32-177, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

9. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP024247 (Escherichia coli O27:H7 strain B4103-1 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

10. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP053043 (Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

11. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to JX469830 (Uncultured bacterium plasmid pG527, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

12. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP013819 (Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

13. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP025925 (Escherichia coli strain 520873 plasmid p520873_36, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

14. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP025875 (Escherichia coli strain 503458 plasmid p503458_37, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

15. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP013795 (Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

16. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP023380 (Escherichia coli strain 127 plasmid p43, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

17. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP011314 (Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

18. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NC_008357 (Pseudomonas aeruginosa plasmid pBS228, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

19. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP027138 (Escherichia coli strain AR_0369 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

20. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP022673 (Shigella sonnei strain 866 plasmid p866, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

21. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP045128 (Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

22. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_LT985250 (Escherichia coli strain 170 plasmid RCS38_p, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

23. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_MK360096 (Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

24. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP053897 (Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

25. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_MF150120 (Klebsiella pneumoniae strain A64477 plasmid pKP64477d, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

26. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_KX756453 (Klebsiella pneumoniae strain 1194/11 plasmid pKP1194a, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

27. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NC_015472 (Escherichia coli plasmid pECTm80, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

28. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP013800 (Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

29. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to MG516911 (Proteus mirabilis plasmid pPm60, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

30. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP003997 (Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13d, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

31. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP054380 (Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

32. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NC_002525 (Escherichia coli K-12 plasmid R721, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

33. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

34. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP034054 (Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

35. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP047114 (Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

36. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP034046 (Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

37. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP027700 (Klebsiella pneumoniae strain KP30835 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

38. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP053899 (Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

39. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_MK264770 (Klebsiella pneumoniae strain KP89 plasmid pKP89, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

40. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_KX774387 (Providencia rettgeri strain 30905 plasmid pC131, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

41. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_MF150120 (Klebsiella pneumoniae strain A64477 plasmid pKP64477d, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

42. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP053895 (Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

43. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_KX756453 (Klebsiella pneumoniae strain 1194/11 plasmid pKP1194a, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

44. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_KU963389 (Escherichia coli strain ECO37 plasmid ECO37P1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

45. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP047288 (Proteus cibarius strain G11 plasmid p152, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

46. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NC_015472 (Escherichia coli plasmid pECTm80, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

47. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP044485 (Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

48. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP025853 (Escherichia coli strain 510016 plasmid p510016_36, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

49. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_KT754165 (Shigella dysenteriae 1 strain 93-531-1 plasmid p93-531-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

50. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP013800 (Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

51. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP053372 (Proteus cibarius strain G32 plasmid pG32-177, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

52. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP024247 (Escherichia coli O27:H7 strain B4103-1 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

53. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP053043 (Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

54. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to MG516911 (Proteus mirabilis plasmid pPm60, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

55. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to JX469830 (Uncultured bacterium plasmid pG527, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

56. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP013819 (Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

57. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP003997 (Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13d, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

58. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to CP025925 (Escherichia coli strain 520873 plasmid p520873_36, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

59. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to CP025875 (Escherichia coli strain 503458 plasmid p503458_37, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

60. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP013795 (Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

61. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to CP054380 (Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

62. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NC_002525 (Escherichia coli K-12 plasmid R721, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

63. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP023380 (Escherichia coli strain 127 plasmid p43, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

64. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP011314 (Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

65. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NC_008357 (Pseudomonas aeruginosa plasmid pBS228, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

66. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP027138 (Escherichia coli strain AR_0369 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

67. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP022673 (Shigella sonnei strain 866 plasmid p866, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

68. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

69. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP034054 (Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

70. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP047114 (Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

71. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP034046 (Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

72. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP045128 (Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

73. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP027700 (Klebsiella pneumoniae strain KP30835 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

74. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_LT985250 (Escherichia coli strain 170 plasmid RCS38_p, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

75. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_MK360096 (Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

76. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP053899 (Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

77. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_MK264770 (Klebsiella pneumoniae strain KP89 plasmid pKP89, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

78. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052804 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

79. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP038508 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

80. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052788 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

81. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052786 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

82. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052838 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

83. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP051676 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

84. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052779 (Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

85. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052832 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

86. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to MN310378 (Klebsiella pneumoniae strain A2293 plasmid pA2293-Ct2, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

87. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052806 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

88. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052818 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

89. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_MH476540 (Klebsiella pneumoniae strain KP1276 plasmid pIA/C-KLUC, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

90. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052795 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

91. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP047882 (Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

92. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052802 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

93. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052840 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

94. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052836 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

95. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052828 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

96. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052826 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

97. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP016409 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

98. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP016407 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

99. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP016413 (Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

100. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_CP016411 (Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

101. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to CP052814 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

102. spacer 3.1|4261266|33|NZ_CP047344|PILER-CR matches to NZ_MG764552 (Klebsiella pneumoniae strain A1763 plasmid pA1763-Ct2, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

103. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_CP053897 (Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence) position: , mismatch: 2, identity: 0.951

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccaccctc	Protospacer
***************************************..

104. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to MN310378 (Klebsiella pneumoniae strain A2293 plasmid pA2293-Ct2, complete sequence) position: , mismatch: 2, identity: 0.951

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctctcccctaaataatccttaaaaaccccatttccacccct	Protospacer
****.*********************.**************

105. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_MH476540 (Klebsiella pneumoniae strain KP1276 plasmid pIA/C-KLUC, complete sequence) position: , mismatch: 2, identity: 0.951

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctctcccctaaataatccttaaaaaccccatttccacccct	Protospacer
****.*********************.**************

106. spacer 3.2|4261322|41|NZ_CP047344|PILER-CR matches to NZ_MG764552 (Klebsiella pneumoniae strain A1763 plasmid pA1763-Ct2, complete sequence) position: , mismatch: 2, identity: 0.951

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctctcccctaaataatccttaaaaaccccatttccacccct	Protospacer
****.*********************.**************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1071143 : 1081980

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164526021.1\|1071143_1072343_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.2e-27	36.6
WP_164526022.1\|1072964_1073933_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	4.4e-136	73.4
WP_072070257.1\|1073957_1076084_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.2e-203	50.9
WP_072070256.1\|1076089_1076509_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	1.0e-09	35.3
WP_072070255.1\|1076520_1076745_-	glutaredoxin family protein	V5UN81	Mycobacterium_phage	2.0e-12	47.1
WP_072070254.1\|1077028_1077502_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_023581133.1\|1077699_1077909_+	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	4.5e-22	74.2
WP_072070253.1\|1078042_1078417_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.9e-23	49.0
WP_036938585.1\|1078430_1079396_-	lipoyl synthase	NA	NA	NA	NA
WP_072070252.1\|1079497_1080142_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_036912266.1\|1080304_1080568_-	YbeD family protein	NA	NA	NA	NA
WP_072070251.1\|1080768_1081980_-	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	7.3e-104	50.7

DBSCAN-SWA_2

1445147 : 1489601

Proteus_phage(25.53%)

holin,integrase,head,tail,portal,capsid,terminase,protease,lysis

attL 1436595:1436609|attR 1454941:1454955

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1436595:1436609	attL	NA	NA	NA	NA
WP_164526096.1\|1445147_1445561_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	8.4e-20	41.0
WP_164526097.1\|1445607_1445793_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.4e-11	52.5
WP_164526098.1\|1445902_1446064_+	hypothetical protein	NA	NA	NA	NA
WP_164526099.1\|1447599_1448253_-	type A chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	1.0e-96	76.4
WP_164526100.1\|1448362_1448593_-	DNA polymerase III subunit theta	A0A1P8DTI0	Proteus_phage	1.2e-28	89.0
WP_164526101.1\|1448953_1449613_-	hypothetical protein	NA	NA	NA	NA
WP_164526102.1\|1449612_1450038_-	hypothetical protein	NA	NA	NA	NA
WP_164526103.1\|1450027_1450876_-	AAA family ATPase	E9LUK9	Lactobacillus_phage	8.0e-25	33.5
WP_164526104.1\|1450956_1452132_-\|integrase	site-specific integrase	A0A2D1GN00	Marinobacter_phage	3.0e-30	30.2
WP_164526105.1\|1452133_1452346_-	hypothetical protein	NA	NA	NA	NA
WP_164526106.1\|1452406_1452799_-	chromosome partitioning protein ParB	S4TTI6	Salmonella_phage	5.7e-26	53.7
WP_164526107.1\|1452801_1453464_-	hypothetical protein	M1F3E2	Salmonella_phage	3.1e-40	45.5
WP_164526108.1\|1453465_1453921_-	hypothetical protein	A0A248SL53	Klebsiella_phage	2.5e-25	38.0
WP_164526109.1\|1453929_1454427_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	9.4e-50	60.6
WP_164526110.1\|1454485_1455313_-	YfdQ family protein	U5P439	Shigella_phage	1.6e-78	54.0
1454941:1454955	attR	NA	NA	NA	NA
WP_006533955.1\|1455378_1455753_-	hypothetical protein	Q8HAA1	Salmonella_phage	4.6e-41	69.7
WP_161770161.1\|1456157_1456586_+	hypothetical protein	U5P096	Shigella_phage	1.8e-17	33.8
WP_164526111.1\|1456942_1457632_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	1.1e-69	57.8
WP_069368310.1\|1457729_1457945_+	helix-turn-helix transcriptional regulator	A0A2H4JEY0	uncultured_Caudovirales_phage	2.2e-08	45.1
WP_164526112.1\|1458001_1458460_+	hypothetical protein	A0A1W6JP72	Morganella_phage	1.0e-26	45.4
WP_164526113.1\|1458548_1458758_+	hypothetical protein	NA	NA	NA	NA
WP_099660103.1\|1458747_1458927_+	DUF4222 domain-containing protein	A0A1W6JP38	Morganella_phage	6.2e-12	58.6
WP_164526114.1\|1458936_1460058_+	replication protein 15	K7PLZ7	Enterobacterial_phage	1.3e-46	54.9
WP_164526115.1\|1460054_1460714_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	1.8e-85	66.7
WP_164526116.1\|1460665_1461082_+	hypothetical protein	NA	NA	NA	NA
WP_164526117.1\|1461081_1461246_+	hypothetical protein	NA	NA	NA	NA
WP_164526908.1\|1461310_1461958_+	site-specific DNA-methyltransferase	A0A2I7QM56	Vibrio_phage	1.9e-82	67.3
WP_109373182.1\|1462024_1462408_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	1.3e-27	54.5
WP_164526118.1\|1462426_1463134_+	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	8.7e-57	52.2
WP_164526119.1\|1463133_1464159_+	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	2.2e-85	46.8
WP_164526120.1\|1464186_1464858_+	hypothetical protein	A0A1W6JP37	Morganella_phage	1.1e-50	48.6
WP_115370633.1\|1464959_1465208_+	hypothetical protein	NA	NA	NA	NA
WP_109373189.1\|1465536_1465926_+	hypothetical protein	S4TRS4	Salmonella_phage	2.7e-12	35.9
WP_109373190.1\|1465922_1466222_+\|holin	phage holin family protein	S4TNV9	Salmonella_phage	2.2e-06	32.9
WP_109373191.1\|1466199_1466619_+	structural protein	A0A2R3UAM8	Myoviridae_environmental_samples	1.5e-24	45.5
WP_109373192.1\|1466615_1467068_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	7.3e-09	31.8
WP_164526121.1\|1467937_1468303_+	hypothetical protein	A0A1P8DTD7	Proteus_phage	9.6e-44	75.6
WP_164526122.1\|1468367_1468715_+	HNH endonuclease	A0A1P8DTD1	Proteus_phage	5.7e-62	97.3
WP_164526123.1\|1468714_1469116_+	hypothetical protein	NA	NA	NA	NA
WP_164526124.1\|1469265_1469739_+\|terminase	phage terminase small subunit P27 family	A0A1P8DTK5	Proteus_phage	5.2e-82	95.5
WP_164526125.1\|1469742_1471476_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	0.0e+00	98.3
WP_164526126.1\|1471475_1472807_+\|portal	phage portal protein	A0A1P8DTI5	Proteus_phage	1.0e-255	99.3
WP_164526127.1\|1472811_1473663_+\|protease	Clp protease ClpP	A0A1P8DTI2	Proteus_phage	2.3e-152	99.3
WP_164526128.1\|1473674_1474889_+\|capsid	phage major capsid protein	A0A1P8DTJ7	Proteus_phage	5.6e-221	99.5
WP_164526129.1\|1474932_1475157_+	hypothetical protein	A0A1P8DTJ1	Proteus_phage	2.9e-19	98.0
WP_069368412.1\|1475156_1475483_+\|head,tail	phage gp6-like head-tail connector protein	A0A1P8DTJ4	Proteus_phage	2.7e-53	95.4
WP_069368413.1\|1475491_1475821_+\|head	phage head closure protein	A0A2H4JHA9	uncultured_Caudovirales_phage	1.6e-05	33.9
WP_069368414.1\|1475810_1476284_+	hypothetical protein	A0A0R6PHU8	Moraxella_phage	5.7e-12	31.7
WP_164526130.1\|1476288_1476630_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_069368416.1\|1476639_1477314_+	hypothetical protein	NA	NA	NA	NA
WP_069368417.1\|1477348_1477762_+	hypothetical protein	NA	NA	NA	NA
WP_072063870.1\|1477758_1478037_+	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_164526131.1\|1478080_1481365_+\|tail	phage tail tape measure protein	A0A220VZA0	Acinetobacter_phage	6.9e-40	32.3
WP_156733248.1\|1481365_1481962_+	hypothetical protein	S4TSP7	Salmonella_phage	7.8e-51	50.3
WP_156733249.1\|1481961_1482543_+	hypothetical protein	Q7Y3Z7	Yersinia_phage	2.0e-51	49.5
WP_156733250.1\|1482601_1483429_+	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	4.0e-05	37.1
WP_156733251.1\|1483449_1483848_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	1.1e-32	49.2
WP_164526132.1\|1483847_1486787_+	DUF1983 domain-containing protein	Q7Y3Z3	Yersinia_phage	1.7e-202	52.0
WP_164526133.1\|1486790_1487822_+	hypothetical protein	NA	NA	NA	NA
WP_164526134.1\|1487857_1489288_+	hypothetical protein	A0A1P8DTJ0	Proteus_phage	4.6e-150	65.5
WP_164526135.1\|1489367_1489601_-	DNA polymerase III subunit theta	A0A1P8DTI0	Proteus_phage	5.0e-30	90.7

DBSCAN-SWA_3

1593098 : 1632662

Morganella_phage(24.14%)

integrase,head,tail,tRNA,portal,capsid,terminase,protease,lysis

attL 1596883:1596905|attR 1638032:1638054

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164526156.1\|1593098_1594202_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_164526157.1\|1594311_1594761_-	NUDIX hydrolase	NA	NA	NA	NA
WP_072069873.1\|1594753_1595383_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_006537208.1\|1595521_1596775_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.8e-20	90.7
1596883:1596905	attL	NA	NA	NA	NA
WP_164526158.1\|1596906_1598040_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	1.9e-154	72.0
WP_017628380.1\|1598014_1598266_-	excisionase	NA	NA	NA	NA
WP_135052057.1\|1598352_1598877_-	HD family hydrolase	A0A1W6JP41	Morganella_phage	1.5e-53	60.8
WP_017628378.1\|1599155_1599788_-	LexA family transcriptional regulator	K7PLZ5	Enterobacterial_phage	1.5e-39	44.4
WP_006537203.1\|1599888_1600095_+	cell division protein	H9C161	Pectobacterium_phage	8.5e-05	40.7
WP_036976726.1\|1600132_1600609_+	hypothetical protein	A0A1W6JP72	Morganella_phage	3.0e-45	60.4
WP_164526159.1\|1600870_1601050_+	DUF4222 domain-containing protein	A0A1W6JP38	Morganella_phage	6.4e-09	53.4
WP_006537200.1\|1601607_1602123_+	hypothetical protein	U5P0A0	Shigella_phage	3.5e-23	44.2
WP_164526160.1\|1602144_1602951_+	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	1.3e-88	61.7
WP_164526161.1\|1602947_1603973_+	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	1.1e-84	46.5
WP_164526162.1\|1604000_1604399_+	antitermination protein	Q8W638	Enterobacteria_phage	3.5e-31	55.0
WP_004244726.1\|1604739_1604952_+	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	3.1e-26	81.4
WP_164526163.1\|1605283_1605742_+	Hsp20 family protein	NA	NA	NA	NA
WP_164526164.1\|1606028_1607141_-	FRG domain-containing protein	NA	NA	NA	NA
WP_164526165.1\|1607907_1609236_-	hypothetical protein	NA	NA	NA	NA
WP_164526166.1\|1609434_1610193_-	hypothetical protein	NA	NA	NA	NA
WP_164526167.1\|1610744_1611167_+	hypothetical protein	NA	NA	NA	NA
WP_026090477.1\|1611232_1611502_+	hypothetical protein	A0A2H4FNF0	Salmonella_phage	4.6e-19	53.3
WP_164526168.1\|1611501_1611972_+	lysozyme	A0A1W6JNW4	Morganella_phage	2.3e-50	62.5
WP_017628365.1\|1611953_1612112_+	hypothetical protein	NA	NA	NA	NA
WP_036976737.1\|1612114_1612576_+\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	1.1e-23	51.2
WP_036937625.1\|1612848_1613052_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_164526169.1\|1613879_1614464_+	Bro-N domain-containing protein	H6WRU8	Salmonella_phage	5.3e-20	44.3
WP_108716960.1\|1614460_1614670_+	hypothetical protein	NA	NA	NA	NA
WP_164526170.1\|1614701_1615109_+	hypothetical protein	NA	NA	NA	NA
WP_164526171.1\|1615105_1615444_+	HNH endonuclease	F1C587	Cronobacter_phage	1.2e-40	67.9
WP_006537822.1\|1615562_1616030_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	9.5e-44	59.7
WP_164526172.1\|1615983_1617717_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	6.9e-148	46.6
WP_164526173.1\|1617716_1618985_+\|portal	phage portal protein	Q77W97	Enterobacteria_phage	1.3e-201	80.2
WP_164526174.1\|1619002_1619671_+\|head,protease	HK97 family phage prohead protease	K7PM91	Enterobacterial_phage	4.3e-82	64.8
WP_087802799.1\|1619674_1620841_+\|capsid	phage major capsid protein	F1C582	Cronobacter_phage	1.3e-169	79.5
WP_164526175.1\|1620879_1621179_+	hypothetical protein	K7PKV5	Enterobacterial_phage	1.1e-32	62.2
WP_087802803.1\|1621178_1621508_+\|head	phage head closure protein	NA	NA	NA	NA
WP_087802806.1\|1621497_1621971_+	hypothetical protein	A0A0R6PHU8	Moraxella_phage	1.3e-11	30.5
WP_087802809.1\|1621976_1622318_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_017628356.1\|1622327_1622993_+	hypothetical protein	NA	NA	NA	NA
WP_164526176.1\|1623057_1623474_+	hypothetical protein	NA	NA	NA	NA
WP_036894769.1\|1623470_1623749_+	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_004242485.1\|1623773_1623965_-	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_164526177.1\|1624091_1627367_+\|tail	phage tail tape measure protein	A0A2I2L6P9	Escherichia_phage	2.7e-44	28.1
WP_164526178.1\|1627367_1627964_+	hypothetical protein	S4TSP7	Salmonella_phage	7.1e-52	52.8
WP_036937593.1\|1627963_1628545_+	hypothetical protein	Q7Y3Z7	Yersinia_phage	9.0e-52	49.5
WP_164526179.1\|1628601_1629000_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	1.2e-31	47.0
WP_164526180.1\|1628999_1632662_+	DUF1983 domain-containing protein	Q7Y3Z3	Yersinia_phage	4.0e-198	50.7
1638032:1638054	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1697588 : 1712402

Tupanvirus(45.45%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164526205.1\|1697588_1698284_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	2.1e-07	27.5
WP_164526206.1\|1698357_1698588_-	DNA polymerase III subunit theta	A0A1P8DTI0	Proteus_phage	1.8e-32	93.4
WP_072070370.1\|1698866_1700795_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.3e-128	37.4
WP_036937410.1\|1700798_1701338_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.7e-15	34.4
WP_004263702.1\|1701431_1701629_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_036937406.1\|1701670_1702027_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_072070368.1\|1702354_1703338_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	4.9e-34	37.7
WP_072070366.1\|1703352_1705740_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.6e-09	27.4
WP_036937394.1\|1705744_1706041_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.2e-13	38.9
WP_164526207.1\|1706402_1707410_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_072070363.1\|1707411_1708158_+	ATP-binding cassette domain-containing protein	A0A2K9L407	Tupanvirus	5.4e-09	26.6
WP_072070361.1\|1708293_1709439_+	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L470	Tupanvirus	1.3e-38	28.0
WP_115349627.1\|1709439_1710420_+	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	A8CG95	Salmonella_phage	4.3e-38	33.8
WP_072070358.1\|1710419_1712402_+	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	1.1e-21	27.2

DBSCAN-SWA_5

1823914 : 1877661

Morganella_phage(24.14%)

holin,integrase,tail,terminase,head

attL 1822699:1822716|attR 1844698:1844715

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1822699:1822716	attL	NA	NA	NA	NA
WP_072068002.1\|1823914_1826512_+	type I DNA topoisomerase	A0A2K9L1Q2	Tupanvirus	9.8e-90	35.6
WP_164526228.1\|1826668_1827193_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.9e-37	49.1
WP_072068003.1\|1827431_1828406_+	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_164526229.1\|1828466_1829297_-	hypothetical protein	NA	NA	NA	NA
WP_164526230.1\|1829392_1830439_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.8e-59	36.8
WP_164526231.1\|1830342_1830651_-	hypothetical protein	NA	NA	NA	NA
WP_164526232.1\|1831063_1831666_-	DNA methyltransferase	G8C7S6	Escherichia_phage	2.1e-59	57.6
WP_164526233.1\|1831652_1831979_-	DUF2591 family protein	A5VW89	Enterobacteria_phage	1.0e-12	42.0
WP_164484702.1\|1831971_1832145_-	hypothetical protein	NA	NA	NA	NA
WP_164526234.1\|1832234_1833287_-	DNA (cytosine-5-)-methyltransferase	A0A2I7R801	Vibrio_phage	1.2e-97	48.5
WP_109409539.1\|1833359_1833641_-	hypothetical protein	NA	NA	NA	NA
WP_164526235.1\|1833633_1833864_-	hypothetical protein	A0A1P8DTI8	Proteus_phage	1.2e-20	65.1
WP_123822255.1\|1833863_1834151_-	hypothetical protein	A0A1B0UY37	Roseobacter_phage	7.4e-15	43.2
WP_164526236.1\|1834150_1834453_-	hypothetical protein	NA	NA	NA	NA
WP_164526237.1\|1834496_1834673_-	hypothetical protein	NA	NA	NA	NA
WP_164526238.1\|1834703_1835117_-	single-stranded DNA-binding protein	A0A1W6JNW8	Morganella_phage	1.7e-52	76.8
WP_164526239.1\|1835106_1835805_-	YqaJ viral recombinase family protein	A0A2R2Z325	Escherichia_phage	4.5e-74	57.0
WP_164526240.1\|1835801_1836686_-	recombinase RecT	A0A2L1IV84	Escherichia_phage	5.0e-94	61.5
WP_164526241.1\|1836682_1836934_-	hypothetical protein	A0A1P8DTG3	Proteus_phage	1.2e-37	96.4
WP_164526242.1\|1837061_1837244_-	host cell division inhibitory peptide Kil	A0A1P8DTH8	Proteus_phage	4.8e-20	83.3
WP_164526243.1\|1837321_1837636_-	hypothetical protein	NA	NA	NA	NA
WP_164526244.1\|1837639_1837843_-	hypothetical protein	A0A088CQ77	Enterobacteria_phage	1.3e-05	52.2
WP_164526245.1\|1837872_1838112_-	hypothetical protein	NA	NA	NA	NA
WP_164526246.1\|1838171_1838414_-	hypothetical protein	NA	NA	NA	NA
WP_164526247.1\|1838467_1838773_-	hypothetical protein	A0A2I7R1U5	Vibrio_phage	1.4e-08	37.8
WP_164526248.1\|1838775_1839096_-	hypothetical protein	A0A1W6JNZ0	Morganella_phage	7.2e-19	52.3
WP_164526249.1\|1839544_1839946_-	hypothetical protein	NA	NA	NA	NA
WP_164526250.1\|1839947_1840508_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_164526251.1\|1840982_1841627_-	LexA family transcriptional regulator	A0A077KGZ5	Edwardsiella_phage	8.1e-78	63.1
WP_161769910.1\|1841732_1841942_+	helix-turn-helix domain-containing protein	K7PKH4	Enterobacteria_phage	5.7e-25	81.8
WP_036935825.1\|1842105_1842447_+	transcriptional regulator	A0A1P8DTF0	Proteus_phage	2.1e-48	92.8
WP_164526252.1\|1842542_1843256_+	GIY-YIG nuclease family protein	A0A088F856	Sulfitobacter_phage	1.9e-11	52.0
WP_164526253.1\|1843233_1844070_+	hypothetical protein	G8C7U5	Escherichia_phage	1.5e-71	53.0
WP_164526254.1\|1844073_1844928_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	1.7e-86	60.0
1844698:1844715	attR	NA	NA	NA	NA
WP_164526255.1\|1844947_1845274_+	hypothetical protein	NA	NA	NA	NA
WP_164526256.1\|1845273_1845504_+	hypothetical protein	NA	NA	NA	NA
WP_164526257.1\|1845500_1845857_+	hypothetical protein	NA	NA	NA	NA
WP_164526258.1\|1846016_1846460_+	hypothetical protein	A0A1P8DTD8	Proteus_phage	9.3e-33	90.5
WP_164526259.1\|1846452_1846665_+	hypothetical protein	L0AQP4	Klebsiella_phage	6.0e-22	77.3
WP_164525799.1\|1846657_1846975_+	hypothetical protein	NA	NA	NA	NA
WP_164526260.1\|1846977_1847409_+	hypothetical protein	A0A1P8DTF9	Proteus_phage	2.1e-69	94.4
WP_164526261.1\|1847405_1848068_+	serine/threonine-protein phosphatase	A0A2D1GLI5	Escherichia_phage	6.2e-73	60.9
WP_063108505.1\|1848179_1848470_+	DUF1364 domain-containing protein	K7P6U2	Enterobacteria_phage	4.3e-39	80.0
WP_164526262.1\|1848466_1848832_+	RusA family crossover junction endodeoxyribonuclease	E5AGG1	Erwinia_phage	3.9e-37	63.2
WP_164526263.1\|1849009_1849510_+	DUF1133 family protein	A0A1P8DTF1	Proteus_phage	7.6e-92	98.8
WP_164526264.1\|1849833_1850169_+\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	8.1e-05	31.5
WP_164526265.1\|1850165_1850498_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	3.7e-34	68.3
WP_164526912.1\|1850499_1850916_+	hypothetical protein	NA	NA	NA	NA
WP_164526266.1\|1850803_1851061_+	peptidase	Q8SBD8	Shigella_phage	1.2e-11	45.2
WP_164526267.1\|1851660_1851906_+	hypothetical protein	NA	NA	NA	NA
WP_164526268.1\|1851974_1852220_+	DUF2560 family protein	NA	NA	NA	NA
WP_164526269.1\|1852277_1852880_+	hypothetical protein	A0A077KBY7	Edwardsiella_phage	5.1e-74	76.8
WP_164526270.1\|1852882_1854367_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	2.3e-269	87.7
WP_164526271.1\|1854368_1855751_+	DUF4055 domain-containing protein	A0A1W6JNV0	Morganella_phage	1.6e-219	81.1
WP_164526272.1\|1855753_1856815_+\|head	phage head morphogenesis protein	A0A1W6JNT7	Morganella_phage	7.2e-156	76.5
WP_036935878.1\|1856881_1857571_+	hypothetical protein	A0A1W6JNU9	Morganella_phage	3.1e-67	77.2
WP_036935881.1\|1857576_1858527_+	hypothetical protein	A0A1W6JNV5	Morganella_phage	7.3e-152	86.2
WP_036935883.1\|1858570_1858948_+	hypothetical protein	A0A1W6JP09	Morganella_phage	3.7e-46	72.8
WP_052038475.1\|1858949_1859291_+	hypothetical protein	A0A1W6JNW7	Morganella_phage	1.1e-52	82.3
WP_036935884.1\|1859293_1859662_+	hypothetical protein	A0A1W6JNX7	Morganella_phage	2.6e-52	84.4
WP_159242355.1\|1859658_1860030_+	hypothetical protein	A0A1W6JNU7	Morganella_phage	8.6e-48	70.7
WP_159242354.1\|1860094_1860850_+	DNA breaking-rejoining protein	A0A1W6JNT1	Morganella_phage	6.3e-106	78.9
WP_164526273.1\|1860899_1861592_+	hypothetical protein	A0A1W6JNX2	Morganella_phage	9.9e-90	71.1
WP_164526274.1\|1861634_1862006_+	hypothetical protein	E7C9U7	Salmonella_phage	4.9e-35	63.7
WP_109372780.1\|1862011_1862191_-	hypothetical protein	A0A192Y6A8	Salmonella_phage	1.7e-22	81.4
WP_161706892.1\|1862521_1864063_+	DNA repair protein	NA	NA	NA	NA
WP_164526913.1\|1864200_1864539_+	hypothetical protein	NA	NA	NA	NA
WP_164526275.1\|1864644_1865079_-	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	9.1e-25	56.2
WP_164526914.1\|1865207_1865384_+	Arc family DNA binding domain-containing protein	G9L6D7	Escherichia_phage	1.4e-13	69.2
WP_164526276.1\|1865424_1865997_+	hypothetical protein	H6WRU8	Salmonella_phage	1.7e-42	73.5
WP_036895024.1\|1866072_1866852_+	ORF6N domain-containing protein	H6WRU9	Salmonella_phage	1.1e-47	46.4
WP_164526277.1\|1866974_1867694_+	hypothetical protein	NA	NA	NA	NA
WP_164526278.1\|1867757_1871150_+	tape measure protein	A0A1W6JNU2	Morganella_phage	8.4e-158	40.7
WP_164526279.1\|1871278_1871779_-	hypothetical protein	A0A077K9U2	Edwardsiella_phage	5.4e-21	40.1
WP_164526280.1\|1871872_1872349_+	hypothetical protein	F1C5F0	Cronobacter_phage	5.6e-60	72.3
WP_164526281.1\|1872348_1872819_+	DUF1833 family protein	F1C5F1	Cronobacter_phage	3.4e-41	51.3
WP_164526282.1\|1872815_1873208_+	C40 family peptidase	F1C5F2	Cronobacter_phage	2.5e-45	59.5
WP_164526283.1\|1873194_1875663_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.5e-252	51.9
WP_164526284.1\|1875720_1877334_+\|tail	tail fiber domain-containing protein	F1C5A8	Cronobacter_phage	2.0e-48	65.4
WP_164526285.1\|1877430_1877661_-	DNA polymerase III subunit theta	A0A1P8DTI0	Proteus_phage	2.2e-33	96.1

DBSCAN-SWA_6

2043347 : 2053394

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164526338.1\|2043347_2045786_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	1.5e-217	50.2
WP_023582154.1\|2045797_2046415_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.7e-72	58.1
WP_164526339.1\|2046416_2047274_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	9.9e-23	33.7
WP_164526340.1\|2047448_2048060_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	2.4e-31	40.6
WP_072068138.1\|2048161_2048623_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	8.5e-13	34.1
WP_164526341.1\|2048622_2049309_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_115349781.1\|2049535_2049619_+	potassium-transporting ATPase subunit F	NA	NA	NA	NA
WP_164526342.1\|2049621_2051325_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_072068141.1\|2051336_2053394_+	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	4.3e-32	26.7

DBSCAN-SWA_7

2356964 : 2408883

Salmonella_phage(16.67%)

integrase,tail,holin,terminase

attL 2396677:2396692|attR 2405828:2405843

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_102138713.1\|2356964_2357558_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_089110956.1\|2357579_2357975_+	S-adenosylhomocysteine hydrolase	NA	NA	NA	NA
WP_004393990.1\|2358080_2358689_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_102138714.1\|2358685_2359837_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_089110954.1\|2359833_2361039_+	ABC transporter permease	NA	NA	NA	NA
WP_014611607.1\|2361040_2361751_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-31	38.3
WP_102138715.1\|2364260_2365037_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_004394002.1\|2365047_2365221_+	hypothetical protein	NA	NA	NA	NA
WP_102138716.1\|2365479_2366667_-\|integrase	site-specific integrase	T1S9J3	Salmonella_phage	2.2e-121	55.5
WP_115349911.1\|2367091_2367586_-	hypothetical protein	NA	NA	NA	NA
WP_115349912.1\|2367585_2367930_-	M15 family peptidase	F1BUL3	Cronobacter_phage	2.0e-43	84.3
WP_104836483.1\|2367932_2368205_-\|holin	phage holin family protein	T1SA10	Salmonella_phage	3.2e-12	37.8
WP_020945795.1\|2368201_2368573_-	hypothetical protein	G9L6E6	Escherichia_phage	3.9e-16	39.1
WP_164526411.1\|2368794_2369943_+	acyltransferase	NA	NA	NA	NA
WP_164526412.1\|2370026_2372393_-	hypothetical protein	A0A193GYU1	Enterobacter_phage	6.8e-90	51.7
WP_004243332.1\|2372566_2372818_+	hypothetical protein	NA	NA	NA	NA
WP_164526413.1\|2372842_2373142_-	hypothetical protein	NA	NA	NA	NA
WP_164526414.1\|2373152_2376530_-	hypothetical protein	A0A2I7RY58	Vibrio_phage	4.7e-185	36.1
WP_164526415.1\|2376529_2379316_-	hypothetical protein	A0A193GYI3	Enterobacter_phage	2.8e-119	44.4
WP_004243338.1\|2379318_2379867_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	3.4e-45	60.2
WP_164526416.1\|2379866_2380355_-	hypothetical protein	A0A0F6R7N6	Escherichia_coli_O157_typing_phage	6.0e-49	59.2
WP_164526417.1\|2380338_2382801_-	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	69.9
WP_164526418.1\|2382800_2383406_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	1.5e-65	60.2
WP_164526419.1\|2383457_2383799_-	hypothetical protein	NA	NA	NA	NA
WP_060555916.1\|2383807_2384239_-	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.4e-30	54.8
WP_004243350.1\|2384297_2385278_-	hypothetical protein	G9L6C5	Escherichia_phage	6.5e-111	59.4
WP_087726489.1\|2385293_2385971_-	peptidase	T1SAP9	Salmonella_phage	4.0e-43	64.3
WP_164526420.1\|2385988_2386303_-	hypothetical protein	Q2A090	Sodalis_phage	2.6e-13	44.2
WP_164526421.1\|2386299_2387964_-\|tail	phage tail protein	A0A193GYI4	Enterobacter_phage	1.8e-198	65.6
WP_115370894.1\|2387973_2388183_-	hypothetical protein	NA	NA	NA	NA
WP_164526422.1\|2388368_2389853_-\|terminase	terminase	G9L6B8	Escherichia_phage	1.5e-228	77.4
WP_164526423.1\|2389852_2390422_-\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	1.5e-43	48.1
WP_164526424.1\|2390465_2391116_-	hypothetical protein	NA	NA	NA	NA
WP_164526425.1\|2391144_2391486_-	hypothetical protein	H9C172	Pectobacterium_phage	5.1e-31	59.0
WP_069368909.1\|2391545_2391893_-	DUF2591 family protein	NA	NA	NA	NA
WP_164526426.1\|2391892_2392123_-	hypothetical protein	NA	NA	NA	NA
WP_164526427.1\|2392109_2392412_-	hypothetical protein	NA	NA	NA	NA
WP_164526428.1\|2392411_2392672_-	hypothetical protein	NA	NA	NA	NA
WP_164526429.1\|2392682_2392856_-	hypothetical protein	NA	NA	NA	NA
WP_049203709.1\|2392982_2393378_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	5.2e-35	60.9
WP_161748129.1\|2393374_2393788_-	hypothetical protein	NA	NA	NA	NA
WP_004243368.1\|2394034_2394760_-	ATP-binding protein	A0A1W6JP39	Morganella_phage	6.7e-105	78.8
WP_164526430.1\|2394759_2395602_-	hypothetical protein	A0A0D4DBT2	Acinetobacter_phage	2.5e-50	59.1
WP_004243371.1\|2395612_2395798_-	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	6.0e-10	50.8
WP_064505757.1\|2395937_2396216_-	hypothetical protein	NA	NA	NA	NA
WP_004243373.1\|2396293_2396902_+	hypothetical protein	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	1.5e-28	35.4
2396677:2396692	attL	NA	NA	NA	NA
WP_004243375.1\|2397150_2397312_+	hypothetical protein	NA	NA	NA	NA
WP_164526431.1\|2397298_2399020_+	DNA breaking-rejoining protein	K7P6V4	Enterobacteria_phage	2.0e-107	49.3
WP_069368900.1\|2399065_2400106_+	recombinase RecT	H6WRX0	Salmonella_phage	4.2e-100	50.7
WP_069368899.1\|2400150_2400408_+	AlpA family phage regulatory protein	A0A2H4J8C8	uncultured_Caudovirales_phage	4.7e-05	35.2
WP_164526237.1\|2400438_2400615_+	hypothetical protein	NA	NA	NA	NA
WP_164526432.1\|2400651_2400831_+	hypothetical protein	NA	NA	NA	NA
WP_164526433.1\|2400840_2401062_+	hypothetical protein	NA	NA	NA	NA
WP_164526434.1\|2401036_2401261_+	hypothetical protein	A0A1U9ZAB3	Proteus_phage	1.3e-27	75.3
WP_164526435.1\|2401253_2401415_+	hypothetical protein	A0A1P8DTH4	Proteus_phage	1.8e-10	78.0
WP_164526234.1\|2401483_2402536_+	DNA (cytosine-5-)-methyltransferase	A0A2I7R801	Vibrio_phage	1.2e-97	48.5
WP_164484702.1\|2402625_2402799_+	hypothetical protein	NA	NA	NA	NA
WP_164526436.1\|2402791_2403127_+	DUF2591 family protein	A5VW89	Enterobacteria_phage	2.3e-12	41.1
WP_164526437.1\|2403104_2403287_+	hypothetical protein	NA	NA	NA	NA
WP_164526438.1\|2403315_2403945_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.0e-65	58.6
WP_164526439.1\|2403947_2404145_+	hypothetical protein	A0A1P8DTH3	Proteus_phage	1.7e-18	64.5
WP_020945830.1\|2404144_2404333_+	hypothetical protein	NA	NA	NA	NA
WP_164526440.1\|2404340_2405537_-\|integrase	tyrosine-type recombinase/integrase	T1S9J3	Salmonella_phage	5.6e-141	62.2
WP_164526441.1\|2405755_2407333_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
2405828:2405843	attR	NA	NA	NA	NA
WP_072068398.1\|2407416_2408883_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.3e-88	38.7

DBSCAN-SWA_8

2610613 : 2617271

Enterobacteria_phage(33.33%)

lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072068573.1\|2610613_2611156_-	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	2.2e-20	35.3
WP_072068574.1\|2611855_2612035_+	GhoT/OrtT family toxin	NA	NA	NA	NA
WP_072068575.1\|2612411_2613329_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164526469.1\|2613370_2613787_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_164526470.1\|2613925_2614381_-\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	1.9e-09	31.1
WP_164526471.1\|2614377_2614782_-	structural protein	A0A2I7RXE2	Vibrio_phage	1.0e-25	51.7
WP_072068579.1\|2614774_2615083_-\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	2.0e-26	53.5
WP_072068580.1\|2615468_2616284_-	antitermination protein	M9NZB0	Enterobacteria_phage	1.9e-55	44.1
WP_164526472.1\|2616533_2617271_+	helix-turn-helix transcriptional regulator	A0A088CBP2	Shigella_phage	4.8e-58	45.9

DBSCAN-SWA_9

3084676 : 3271922

214

Enterobacteria_phage(17.48%)

plate,holin,integrase,head,tail,portal,terminase,protease,lysis

attL 3223005:3223060|attR 3270772:3270827

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072069332.1\|3084676_3086014_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_072069333.1\|3086010_3086679_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_072069334.1\|3086657_3088397_+	OmpA family protein	NA	NA	NA	NA
WP_023583757.1\|3088419_3088911_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_164526566.1\|3089274_3091941_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	5.9e-90	30.4
WP_164526567.1\|3091983_3092502_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_164526568.1\|3092492_3093011_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_164526569.1\|3093001_3095524_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_164526570.1\|3095608_3098008_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.6e-14	34.3
WP_164526571.1\|3098000_3098783_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_164526572.1\|3098831_3099089_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_164526573.1\|3099139_3099664_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_164526574.1\|3099648_3100200_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_072071149.1\|3100184_3100730_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_072071150.1\|3100714_3103069_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_072071151.1\|3103128_3104262_+	hypothetical protein	NA	NA	NA	NA
WP_164526575.1\|3104248_3107605_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_115350726.1\|3107650_3109270_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_072070787.1\|3111036_3112134_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_082151846.1\|3112108_3112672_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_072070789.1\|3112674_3113103_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_164526576.1\|3113193_3114570_+	hypothetical protein	NA	NA	NA	NA
WP_164526577.1\|3114639_3115218_+	hypothetical protein	NA	NA	NA	NA
WP_072070825.1\|3115625_3116357_+	ankyrin repeat domain-containing protein	A0A0G2Y7V3	Acanthamoeba_polyphaga_mimivirus	1.4e-06	33.1
WP_072070791.1\|3116506_3116800_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_164526578.1\|3117251_3117779_-	hypothetical protein	NA	NA	NA	NA
WP_072070793.1\|3118315_3119470_+	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	2.6e-34	26.8
WP_115350733.1\|3119513_3120929_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_036939804.1\|3121904_3122423_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_164526930.1\|3122524_3124645_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_072070796.1\|3124654_3125659_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_164526579.1\|3125673_3130200_+	DUF4150 domain-containing protein	A0A2H4JHK7	uncultured_Caudovirales_phage	5.2e-22	42.5
WP_115350738.1\|3130199_3130895_+	hypothetical protein	NA	NA	NA	NA
WP_164526580.1\|3131739_3132447_+	hypothetical protein	NA	NA	NA	NA
WP_072070801.1\|3133506_3133824_+	hypothetical protein	NA	NA	NA	NA
WP_082151851.1\|3134071_3134458_+	RHS repeat protein	NA	NA	NA	NA
WP_072070803.1\|3135204_3135702_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_072070804.1\|3135722_3137201_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_072070805.1\|3137206_3137644_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_164526581.1\|3137645_3139430_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_115350744.1\|3139393_3140443_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_072070808.1\|3140448_3141690_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_072070809.1\|3141691_3142246_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_072070810.1\|3142248_3143610_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_072070811.1\|3143602_3144358_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_164526582.1\|3144367_3147004_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	7.4e-85	29.1
WP_164526583.1\|3147000_3147798_+	Fis family transcriptional regulator	NA	NA	NA	NA
WP_164526584.1\|3147794_3148445_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_164526585.1\|3148450_3149911_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_164526586.1\|3149913_3153465_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_164526587.1\|3153504_3154836_+	hypothetical protein	NA	NA	NA	NA
WP_164526588.1\|3154895_3156632_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_072070819.1\|3157200_3157509_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_154632030.1\|3158093_3158543_-	hypothetical protein	NA	NA	NA	NA
WP_164526589.1\|3158608_3159097_-	hypothetical protein	NA	NA	NA	NA
WP_164526590.1\|3159247_3159721_-	hypothetical protein	NA	NA	NA	NA
WP_164526591.1\|3159725_3159902_-	hypothetical protein	NA	NA	NA	NA
WP_164526592.1\|3159898_3160606_-	WYL domain-containing protein	A0A0R6PH67	Moraxella_phage	3.9e-09	24.5
WP_164526593.1\|3160817_3161654_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.9e-43	37.0
WP_164526594.1\|3161667_3162093_-	antirestriction protein	NA	NA	NA	NA
WP_164526595.1\|3162184_3163057_-	GTP-binding protein	NA	NA	NA	NA
WP_164526596.1\|3163118_3164057_-	hypothetical protein	NA	NA	NA	NA
WP_164526597.1\|3164484_3165072_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_036968140.1\|3165177_3165387_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_036968137.1\|3165748_3166189_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	8.3e-42	64.7
WP_164526598.1\|3166199_3167489_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.0e-172	73.0
WP_164526599.1\|3167544_3169296_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_164526600.1\|3169309_3169675_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_164526601.1\|3169722_3170058_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	8.1e-21	58.5
WP_107678460.1\|3170323_3171502_+	hypothetical protein	NA	NA	NA	NA
WP_164526602.1\|3171491_3172001_+	hypothetical protein	NA	NA	NA	NA
WP_107678462.1\|3172000_3173968_+	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_164526603.1\|3174013_3175195_+	hypothetical protein	NA	NA	NA	NA
WP_164526604.1\|3175230_3176898_-	ATP-dependent helicase	A0A1V0SAV1	Catovirus	5.6e-14	26.2
WP_164526605.1\|3176894_3178799_-	AAA family ATPase	NA	NA	NA	NA
WP_115350786.1\|3179051_3180260_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.1e-133	56.7
WP_099659261.1\|3180666_3181893_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	1.5e-35	30.2
WP_099659260.1\|3182274_3183831_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_164526606.1\|3184371_3185796_-	hypothetical protein	A0A1P8DTJ0	Proteus_phage	3.2e-151	66.7
WP_164526607.1\|3185819_3189803_-	DUF1983 domain-containing protein	A0A0P0ZBW1	Stx2-converting_phage	2.3e-279	52.7
WP_164526932.1\|3189817_3190402_-\|tail	tail assembly protein	K7PH50	Enterobacteria_phage	1.5e-43	48.0
WP_164526931.1\|3190371_3191100_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	2.3e-89	61.1
WP_164526608.1\|3191121_3191826_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.7e-68	51.9
WP_152964573.1\|3191872_3192166_-	hypothetical protein	NA	NA	NA	NA
WP_164526609.1\|3192186_3192516_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.8e-26	52.3
WP_164526610.1\|3192516_3195534_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	4.8e-96	30.8
WP_162556621.1\|3195502_3195814_-\|tail	phage tail assembly protein T	K7PHE1	Enterobacteria_phage	4.7e-15	41.3
WP_164526611.1\|3195843_3196233_-\|tail	phage minor tail protein G	K7PJY4	Enterobacterial_phage	2.2e-14	37.2
WP_164526612.1\|3196244_3196766_-\|tail	phage tail protein	M9NYX0	Enterobacteria_phage	4.9e-65	74.7
WP_164526933.1\|3196777_3197173_-\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	2.6e-42	60.3
WP_164526613.1\|3197172_3197736_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	2.1e-50	57.1
WP_164526614.1\|3197745_3198018_-	ATP-binding protein	K7PH43	Enterobacteria_phage	2.4e-15	44.9
WP_164526615.1\|3198029_3198371_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	7.7e-19	49.1
WP_164526616.1\|3198459_3200448_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	5.9e-252	65.0
WP_164526617.1\|3200413_3201904_-\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	8.7e-192	65.6
WP_072062679.1\|3201900_3202116_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.2e-17	64.3
WP_164526618.1\|3202112_3204218_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	4.4e-290	71.5
WP_072069170.1\|3204217_3204718_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	2.1e-41	56.4
WP_164526619.1\|3204978_3205119_-	hypothetical protein	NA	NA	NA	NA
WP_082151788.1\|3205138_3205360_-	hypothetical protein	NA	NA	NA	NA
WP_141650201.1\|3205370_3205748_-	hypothetical protein	A0A1P8DTD7	Proteus_phage	3.0e-32	61.2
WP_115351037.1\|3206639_3207014_-\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	4.8e-14	44.7
WP_075673907.1\|3207084_3207663_-	hypothetical protein	A0A0H4IQ87	Shigella_phage	1.5e-70	66.7
WP_036934635.1\|3207862_3208282_-	structural protein	A0A2R3UAM8	Myoviridae_environmental_samples	5.7e-24	45.4
WP_115350922.1\|3208274_3208592_-\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	1.3e-31	60.0
WP_115350921.1\|3208829_3209078_-	hypothetical protein	NA	NA	NA	NA
WP_115350920.1\|3209149_3209359_-	hypothetical protein	NA	NA	NA	NA
WP_064720843.1\|3209464_3209662_-	hypothetical protein	A0A1W6JNU4	Morganella_phage	7.1e-09	45.6
WP_064720844.1\|3209871_3211038_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	A0A218MNE0	uncultured_virus	8.6e-86	43.6
WP_075673909.1\|3211278_3211662_-	antitermination protein	A0A088CD47	Shigella_phage	4.2e-50	72.2
WP_164526620.1\|3211661_3212636_-	DNA primase	A0A286N2Q0	Klebsiella_phage	1.7e-103	54.8
WP_164526621.1\|3212632_3214198_-	DEAD/DEAH box helicase family protein	A0A286N2P9	Klebsiella_phage	3.3e-218	68.7
WP_072065067.1\|3214480_3214729_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	4.0e-17	56.0
WP_072065068.1\|3214721_3214946_-	hypothetical protein	NA	NA	NA	NA
WP_072065069.1\|3215041_3215749_+	LexA family transcriptional regulator	K7P8B2	Enterobacteria_phage	1.1e-75	60.9
WP_072065070.1\|3215783_3216125_+	DUF3024 domain-containing protein	A0A1W6JP12	Morganella_phage	7.4e-38	63.7
WP_072065072.1\|3216498_3217077_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_072065073.1\|3217073_3217529_+	hypothetical protein	NA	NA	NA	NA
WP_072065074.1\|3217739_3217946_+	hypothetical protein	NA	NA	NA	NA
WP_072065075.1\|3217948_3218158_+	hypothetical protein	NA	NA	NA	NA
WP_164526622.1\|3218138_3218315_+	hypothetical protein	NA	NA	NA	NA
WP_164526623.1\|3218304_3218706_+	hypothetical protein	NA	NA	NA	NA
WP_164526624.1\|3218705_3219005_+	hypothetical protein	NA	NA	NA	NA
WP_164526625.1\|3219001_3219424_+	hypothetical protein	NA	NA	NA	NA
WP_164526626.1\|3219498_3219852_+	hypothetical protein	NA	NA	NA	NA
WP_052038446.1\|3219838_3220045_+	hypothetical protein	NA	NA	NA	NA
WP_164526627.1\|3220041_3220524_+	hypothetical protein	NA	NA	NA	NA
WP_164526934.1\|3220767_3221235_+	hypothetical protein	A0A286S260	Klebsiella_phage	1.7e-29	48.5
WP_164526628.1\|3221234_3221816_+	hypothetical protein	NA	NA	NA	NA
WP_036934676.1\|3221828_3222437_+	hypothetical protein	NA	NA	NA	NA
WP_164526629.1\|3222436_3222754_+	hypothetical protein	NA	NA	NA	NA
WP_072070108.1\|3222750_3222939_+	AlpA family phage regulatory protein	NA	NA	NA	NA
3223005:3223060	attL	NA	NA	NA	NA
WP_164526630.1\|3223249_3223480_+	DNA polymerase III subunit theta	A0A1P8DTI0	Proteus_phage	4.8e-33	93.4
WP_164526631.1\|3223480_3223900_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_164525800.1\|3223902_3225429_-	hypothetical protein	K4I0L0	Acinetobacter_phage	3.1e-19	31.9
WP_049206561.1\|3225436_3226069_-	DUF2612 domain-containing protein	K4HYS2	Acinetobacter_phage	4.3e-47	49.0
WP_164526632.1\|3226068_3227259_-	hypothetical protein	E2GM17	Acinetobacter_phage	1.5e-77	40.7
WP_049206563.1\|3227255_3227609_-	hypothetical protein	I2GUF7	Acinetobacter_phage	9.4e-28	52.1
WP_164526633.1\|3227610_3228303_-\|plate	phage baseplate protein	A0A2R3UAK1	Myoviridae_environmental_samples	1.3e-28	40.2
WP_164526634.1\|3228283_3229174_-	hypothetical protein	E2GM20	Acinetobacter_phage	3.1e-59	41.7
WP_129037583.1\|3229160_3229436_-	hypothetical protein	A0A220NQH5	Acinetobacter_phage	1.7e-16	45.7
WP_164526635.1\|3229436_3230144_-	hypothetical protein	A0A1V0DZ59	Acinetobacter_phage	2.4e-46	53.9
WP_161769612.1\|3230219_3230654_-	hypothetical protein	A0A0S2SYH1	Pseudomonas_phage	3.5e-32	46.2
WP_164526636.1\|3230663_3231212_-	hypothetical protein	NA	NA	NA	NA
WP_164526637.1\|3231622_3232435_-	hypothetical protein	P79672	Haemophilus_phage	7.2e-15	30.3
WP_164526638.1\|3232499_3234842_-	hypothetical protein	A0A1W6JPF2	Morganella_phage	1.7e-173	46.1
WP_129037597.1\|3235095_3235506_-	hypothetical protein	A0A068CGG2	Acinetobacter_phage	1.9e-19	40.7
WP_129037599.1\|3235505_3235952_-	hypothetical protein	A0A1V0DZ74	Acinetobacter_phage	9.7e-38	51.0
WP_164526639.1\|3235964_3237422_-	DUF3383 domain-containing protein	E2GLU1	Acinetobacter_phage	1.2e-84	38.4
WP_164526640.1\|3237433_3237919_-	hypothetical protein	NA	NA	NA	NA
WP_164526935.1\|3237906_3238284_-	hypothetical protein	K4I3A0	Acinetobacter_phage	2.0e-23	42.6
WP_161769605.1\|3238273_3238732_-	hypothetical protein	A0A077KC03	Edwardsiella_phage	2.7e-35	57.6
WP_161769604.1\|3238724_3239129_-	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_161769624.1\|3239131_3239335_-	hypothetical protein	NA	NA	NA	NA
WP_164526641.1\|3239459_3240485_-	DUF2184 domain-containing protein	A0A077KC85	Edwardsiella_phage	3.1e-63	37.5
WP_161769602.1\|3240484_3240973_-	hypothetical protein	A0A077KAW3	Edwardsiella_phage	2.9e-35	47.8
WP_164526642.1\|3240975_3242136_-	DUF2213 domain-containing protein	A0A219YBB9	Aeromonas_phage	1.5e-58	36.4
WP_164526936.1\|3242185_3242899_-\|head	phage head morphogenesis protein	A0A2R3UAK2	Myoviridae_environmental_samples	2.6e-40	41.8
WP_164526643.1\|3242957_3244376_-	DUF1073 domain-containing protein	A0A077KC81	Edwardsiella_phage	1.2e-76	37.8
WP_164526644.1\|3244372_3245716_-\|terminase	PBSX family phage terminase large subunit	A0A191ZDJ9	Acinetobacter_phage	1.0e-167	65.1
WP_164526645.1\|3245708_3246233_-\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	9.3e-56	72.7
WP_164526646.1\|3246266_3246425_-	hypothetical protein	NA	NA	NA	NA
WP_164526647.1\|3246424_3246937_-	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	1.6e-57	62.9
WP_164526648.1\|3247416_3247581_-	hypothetical protein	NA	NA	NA	NA
WP_164526938.1\|3247577_3247805_-	peptidase	Q8SBD8	Shigella_phage	1.3e-11	47.9
WP_164526937.1\|3247722_3248139_-	hypothetical protein	NA	NA	NA	NA
WP_164526265.1\|3248140_3248473_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	3.7e-34	68.3
WP_164526264.1\|3248469_3248805_-\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	8.1e-05	31.5
WP_164526263.1\|3249128_3249629_-	DUF1133 family protein	A0A1P8DTF1	Proteus_phage	7.6e-92	98.8
WP_164526262.1\|3249806_3250172_-	RusA family crossover junction endodeoxyribonuclease	E5AGG1	Erwinia_phage	3.9e-37	63.2
WP_063108505.1\|3250168_3250459_-	DUF1364 domain-containing protein	K7P6U2	Enterobacteria_phage	4.3e-39	80.0
WP_164526261.1\|3250570_3251233_-	serine/threonine-protein phosphatase	A0A2D1GLI5	Escherichia_phage	6.2e-73	60.9
WP_164526260.1\|3251229_3251661_-	hypothetical protein	A0A1P8DTF9	Proteus_phage	2.1e-69	94.4
WP_164525799.1\|3251663_3251981_-	hypothetical protein	NA	NA	NA	NA
WP_164526259.1\|3251973_3252186_-	hypothetical protein	L0AQP4	Klebsiella_phage	6.0e-22	77.3
WP_164526649.1\|3252178_3252622_-	hypothetical protein	A0A1P8DTD8	Proteus_phage	9.3e-33	90.5
WP_164526650.1\|3252623_3252833_-	hypothetical protein	A0A1P8DTG8	Proteus_phage	1.4e-31	100.0
WP_164526651.1\|3252825_3253083_-	hypothetical protein	A0A1P8DTF4	Proteus_phage	2.0e-43	94.0
WP_164526652.1\|3253072_3253246_-	hypothetical protein	NA	NA	NA	NA
WP_164526653.1\|3253242_3253470_-	hypothetical protein	NA	NA	NA	NA
WP_164526654.1\|3253466_3253661_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_164526655.1\|3253849_3254524_-	DNA replication protein	A0A1P8DTF3	Proteus_phage	1.2e-121	96.9
WP_164526656.1\|3255422_3256106_-	phage regulatory protein/antirepressor Ant	A0A1P8DTE1	Proteus_phage	2.0e-114	94.3
WP_063073726.1\|3256127_3256460_-	transcriptional regulator	A0A1P8DTF0	Proteus_phage	3.5e-53	99.1
WP_072063072.1\|3256602_3256821_-	helix-turn-helix domain-containing protein	A0A2D1GLN0	Escherichia_phage	6.4e-19	66.7
WP_164526657.1\|3256927_3257647_+	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	9.1e-62	53.4
WP_164526939.1\|3258367_3258673_+	hypothetical protein	NA	NA	NA	NA
WP_164526658.1\|3258687_3258840_+	hypothetical protein	NA	NA	NA	NA
WP_164526659.1\|3258836_3259019_-	hypothetical protein	NA	NA	NA	NA
WP_164526660.1\|3259134_3259350_+	hypothetical protein	NA	NA	NA	NA
WP_164526661.1\|3259624_3259900_+	hypothetical protein	NA	NA	NA	NA
WP_164525801.1\|3259929_3260193_+	hypothetical protein	A0A2H4JA69	uncultured_Caudovirales_phage	2.2e-05	44.6
WP_164526662.1\|3260194_3260494_+	hypothetical protein	NA	NA	NA	NA
WP_164526663.1\|3260574_3261000_+	hypothetical protein	NA	NA	NA	NA
WP_164526664.1\|3261021_3261963_+	cell envelope biogenesis protein TolA	A0A2I7QK72	Vibrio_phage	2.3e-20	46.6
WP_164526665.1\|3262228_3262495_+	hypothetical protein	NA	NA	NA	NA
WP_164526940.1\|3262509_3262962_+	class I SAM-dependent methyltransferase	A0A1W6JP48	Morganella_phage	1.6e-64	73.8
WP_164526666.1\|3262961_3263183_+	hypothetical protein	NA	NA	NA	NA
WP_164526667.1\|3263179_3264106_+	recombinase RecT	F1C5B8	Cronobacter_phage	2.0e-109	66.2
WP_164526239.1\|3264102_3264801_+	YqaJ viral recombinase family protein	A0A2R2Z325	Escherichia_phage	4.5e-74	57.0
WP_164526238.1\|3264790_3265204_+	single-stranded DNA-binding protein	A0A1W6JNW8	Morganella_phage	1.7e-52	76.8
WP_164526668.1\|3265234_3265573_+	hypothetical protein	NA	NA	NA	NA
WP_164526669.1\|3265608_3265902_+	hypothetical protein	NA	NA	NA	NA
WP_164526670.1\|3265926_3266106_+	hypothetical protein	A0A1P8DTH9	Proteus_phage	5.8e-10	57.1
WP_164526433.1\|3266115_3266337_+	hypothetical protein	NA	NA	NA	NA
WP_164526434.1\|3266311_3266536_+	hypothetical protein	A0A1U9ZAB3	Proteus_phage	1.3e-27	75.3
WP_164526435.1\|3266528_3266690_+	hypothetical protein	A0A1P8DTH4	Proteus_phage	1.8e-10	78.0
WP_164526234.1\|3266758_3267811_+	DNA (cytosine-5-)-methyltransferase	A0A2I7R801	Vibrio_phage	1.2e-97	48.5
WP_164484702.1\|3267900_3268074_+	hypothetical protein	NA	NA	NA	NA
WP_164526233.1\|3268066_3268393_+	DUF2591 family protein	A5VW89	Enterobacteria_phage	1.0e-12	42.0
WP_164526232.1\|3268379_3268982_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.1e-59	57.6
WP_164526671.1\|3269394_3269727_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164526672.1\|3269603_3270767_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	5.6e-178	75.7
WP_072070109.1\|3271049_3271922_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.8e-32	36.1
3270772:3270827	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4209579 : 4260453

Virus_Rctr41k(20.0%)

integrase,transposase,tRNA

attL 4239199:4239213|attR 4262326:4262340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072068962.1\|4209579_4210608_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_072068963.1\|4210683_4211358_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_072068964.1\|4211466_4212090_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	4.2e-63	58.0
WP_164526881.1\|4212462_4214421_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	7.4e-90	39.5
WP_072068966.1\|4214579_4214891_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_164526882.1\|4214887_4216543_+	cation acetate symporter	NA	NA	NA	NA
WP_072068968.1\|4216950_4218534_+	phosphoethanolamine transferase	NA	NA	NA	NA
WP_072071098.1\|4224776_4225463_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_072071097.1\|4225545_4226940_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_072071096.1\|4227011_4227944_-	ribokinase	NA	NA	NA	NA
WP_115351347.1\|4228224_4229724_+	ATPase RavA	A0A0N9PBE1	Sulfolobus_monocaudavirus	1.2e-20	36.1
WP_164526883.1\|4229731_4231189_+	ATPase RavA stimulator ViaA	NA	NA	NA	NA
WP_072071093.1\|4231189_4232182_-	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	2.0e-51	36.8
WP_069367404.1\|4232341_4232803_+	transcriptional regulator AsnC	NA	NA	NA	NA
WP_072071092.1\|4232903_4233344_+	FMN-binding protein MioC	NA	NA	NA	NA
WP_072071091.1\|4233721_4235620_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_164526884.1\|4235616_4236243_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_115351345.1\|4236856_4237234_+	F0F1 ATP synthase subunit I	NA	NA	NA	NA
WP_072071088.1\|4237265_4238090_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_004246596.1\|4238135_4238375_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_072071087.1\|4238436_4238907_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_072071086.1\|4238919_4239453_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
4239199:4239213	attL	NA	NA	NA	NA
WP_072071085.1\|4239467_4241009_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_036933511.1\|4241067_4241931_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_023583323.1\|4241965_4243348_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_006534340.1\|4243369_4243786_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_072071084.1\|4243938_4245312_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7P8	Chrysochromulina_ericina_virus	1.8e-29	32.3
WP_164526885.1\|4245471_4247298_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1I9J5	Paramecium_bursaria_Chlorella_virus	1.6e-131	44.9
WP_001029679.1\|4247456_4248278_+\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_000267723.1\|4248264_4250373_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_001276994.1\|4250369_4252037_+	AAA family ATPase	NA	NA	NA	NA
WP_001243518.1\|4252039_4253566_+\|transposase	transposase	NA	NA	NA	NA
WP_000251879.1\|4253566_4255183_+\|transposase	transposase	NA	NA	NA	NA
WP_001271300.1\|4255413_4255791_-	hypothetical protein	NA	NA	NA	NA
WP_000119696.1\|4256200_4256572_-	hypothetical protein	NA	NA	NA	NA
WP_001444089.1\|4256632_4257130_-	hypothetical protein	NA	NA	NA	NA
WP_001206315.1\|4257205_4257994_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000704156.1\|4258051_4258576_-	streptothricin N-acetyltransferase Sat2	E4ZFP7	Streptococcus_phage	4.2e-16	38.9
WP_000777554.1\|4258670_4259144_-	trimethoprim-resistant dihydrofolate reductase DfrA1	A0A140HLG8	Bacillus_phage	1.6e-19	34.4
WP_000071896.1\|4259475_4260012_+\|integrase	class 2 integron integrase IntI2	A0A1P8DJJ6	Virus_Rctr41k	6.9e-14	34.4
WP_000497519.1\|4260126_4260453_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	2.1e-18	52.0
4262326:4262340	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047345

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047346

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP047344

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection