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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP049197 Escherichia coli strain E597 chromosome, complete genome 5 crisprs cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,RT,WYL,PD-DExK 0 11 11 0

Results visualization

1. NZ_CP049197
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049197_1 322182-322820 Orphan I-E
10 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049197_2 349958-350532 TypeI-E I-E
9 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049197_3 1535305-1535428 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049197_4 2377629-2377720 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049197_5 3678591-3678740 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP049197_4 4.1|2377655|40|NZ_CP049197|CRISPRCasFinder 2377655-2377694 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP049197_1 1.13|322699|32|NZ_CP049197|CRISPRCasFinder,CRT 322699-322730 32 KT898133 Aeromonas phage phiARM81ld, complete genome 45655-45686 2 0.938
NZ_CP049197_2 2.4|350167|35|NZ_CP049197|PILER-CR,CRISPRCasFinder,CRT 350167-350201 35 NZ_CP037443 Klebsiella sp. PO552 plasmid p2, complete sequence 42676-42710 2 0.943
NZ_CP049197_3 3.1|1535348|38|NZ_CP049197|CRISPRCasFinder 1535348-1535385 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP049197_1 1.1|322212|31|NZ_CP049197|PILER-CR 322212-322242 31 NC_008712 Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence 320388-320418 5 0.839
NZ_CP049197_1 1.3|322334|31|NZ_CP049197|PILER-CR 322334-322364 31 NC_016040 Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence 37867-37897 6 0.806
NZ_CP049197_1 1.7|322333|32|NZ_CP049197|CRISPRCasFinder,CRT 322333-322364 32 NC_016040 Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence 37866-37897 6 0.812
NZ_CP049197_1 1.1|322212|31|NZ_CP049197|PILER-CR 322212-322242 31 NZ_CP045381 Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence 107507-107537 7 0.774
NZ_CP049197_1 1.1|322212|31|NZ_CP049197|PILER-CR 322212-322242 31 NZ_CP019631 Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence 199281-199311 7 0.774
NZ_CP049197_1 1.9|322455|32|NZ_CP049197|CRISPRCasFinder,CRT 322455-322486 32 KC821619 Cellulophaga phage phi18:1, complete genome 6924-6955 7 0.781
NZ_CP049197_1 1.9|322455|32|NZ_CP049197|CRISPRCasFinder,CRT 322455-322486 32 KC821627 Cellulophaga phage phi18:2, complete genome 6924-6955 7 0.781
NZ_CP049197_1 1.5|322211|32|NZ_CP049197|CRISPRCasFinder,CRT 322211-322242 32 NZ_CP045381 Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence 107507-107538 8 0.75
NZ_CP049197_1 1.5|322211|32|NZ_CP049197|CRISPRCasFinder,CRT 322211-322242 32 NZ_CP019631 Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence 199281-199312 8 0.75
NZ_CP049197_1 1.8|322394|32|NZ_CP049197|CRISPRCasFinder,CRT 322394-322425 32 MN855878 Bacteriophage sp. isolate 336, complete genome 5171-5202 8 0.75
NZ_CP049197_1 1.13|322699|32|NZ_CP049197|CRISPRCasFinder,CRT 322699-322730 32 MN901520 Halorubrum coriense virus Hardycor2, complete genome 16524-16555 8 0.75
NZ_CP049197_1 1.9|322455|32|NZ_CP049197|CRISPRCasFinder,CRT 322455-322486 32 NZ_CP020483 Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence 383-414 9 0.719
NZ_CP049197_2 2.5|350228|35|NZ_CP049197|PILER-CR,CRISPRCasFinder,CRT 350228-350262 35 NZ_CP038863 Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence 20152-20186 12 0.657

1. spacer 4.1|2377655|40|NZ_CP049197|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 1.13|322699|32|NZ_CP049197|CRISPRCasFinder,CRT matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 2, identity: 0.938

gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
gacgacgagacgccctggtgcgccgcgttcgt	Protospacer
*****.**************.***********

3. spacer 2.4|350167|35|NZ_CP049197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.943

tcggcgagtaagagtactgagtattttaatctcat	CRISPR spacer
acggcgagtaagagtgctgagtattttaatctcat	Protospacer
 **************.*******************

4. spacer 3.1|1535348|38|NZ_CP049197|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 1.1|322212|31|NZ_CP049197|PILER-CR matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 5, identity: 0.839

cattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
cgtcgactgcccgtggcgtcccgccgacctg	Protospacer
*.*.******************  ****** 

6. spacer 1.3|322334|31|NZ_CP049197|PILER-CR matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.806

gcacgccctgccggaatctcccctcgctctc	CRISPR spacer
gcacgccctgccggaagatcccctcacgatt	Protospacer
****************  *******.*  *.

7. spacer 1.7|322333|32|NZ_CP049197|CRISPRCasFinder,CRT matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.812

tgcacgccctgccggaatctcccctcgctctc	CRISPR spacer
tgcacgccctgccggaagatcccctcacgatt	Protospacer
*****************  *******.*  *.

8. spacer 1.1|322212|31|NZ_CP049197|PILER-CR matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 7, identity: 0.774

cattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
cgtcgactgcccgtggggtcccagcgaaatc	Protospacer
*.*.************ ***** ****  *.

9. spacer 1.1|322212|31|NZ_CP049197|PILER-CR matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

cattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
cgtcgactgcccgtggggtcccagcgaaatc	Protospacer
*.*.************ ***** ****  *.

10. spacer 1.9|322455|32|NZ_CP049197|CRISPRCasFinder,CRT matches to KC821619 (Cellulophaga phage phi18:1, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

11. spacer 1.9|322455|32|NZ_CP049197|CRISPRCasFinder,CRT matches to KC821627 (Cellulophaga phage phi18:2, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

12. spacer 1.5|322211|32|NZ_CP049197|CRISPRCasFinder,CRT matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

13. spacer 1.5|322211|32|NZ_CP049197|CRISPRCasFinder,CRT matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

14. spacer 1.8|322394|32|NZ_CP049197|CRISPRCasFinder,CRT matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

agtaagccggttgattatcgcca----gggatatta	CRISPR spacer
agtaagcaggatgattatcgccaccatggcgt----	Protospacer
******* ** ************    ** .*    

15. spacer 1.13|322699|32|NZ_CP049197|CRISPRCasFinder,CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 8, identity: 0.75

--gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
ccgccgcc--gacgctcgggtgtgccgcgttcgg	Protospacer
  * ** .  *****.* *************** 

16. spacer 1.9|322455|32|NZ_CP049197|CRISPRCasFinder,CRT matches to NZ_CP020483 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence) position: , mismatch: 9, identity: 0.719

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
acttttattgttttgagtgaaaataaaggcta	Protospacer
* .*********** ** ******** *    

17. spacer 2.5|350228|35|NZ_CP049197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.657

tcggccatagactttattaacttcattgggggtta	CRISPR spacer
atcgccatagaattttttaacttcattgcctaaag	Protospacer
 . ******** *** ************   .  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7523 : 89347 54 Staphylococcus_phage(14.29%) transposase,integrase,protease attL 58261:58276|attR 95359:95374
DBSCAN-SWA_2 366890 : 374030 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_3 997085 : 1006528 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_4 1017967 : 1081813 73 Escherichia_phage(35.42%) plate,lysis,portal,tail,capsid,terminase,head,holin,integrase,tRNA attL 1045150:1045176|attR 1077499:1077525
DBSCAN-SWA_5 1129218 : 1136736 7 Escherichia_phage(42.86%) NA NA
DBSCAN-SWA_6 1564649 : 1696801 154 Enterobacteria_phage(34.29%) protease,lysis,portal,tail,transposase,capsid,head,terminase,integrase,tRNA attL 1582526:1582542|attR 1702964:1702980
DBSCAN-SWA_7 1845380 : 1953430 103 Escherichia_phage(49.12%) lysis,tail,transposase,holin,terminase,integrase,tRNA attL 1872118:1872134|attR 1952563:1952579
DBSCAN-SWA_8 2260785 : 2326432 59 Stx2-converting_phage(16.67%) transposase NA
DBSCAN-SWA_9 3229704 : 3291979 52 Escherichia_phage(22.22%) transposase,protease,plate,tRNA NA
DBSCAN-SWA_10 3633901 : 3662226 22 Stx2-converting_phage(16.67%) transposase NA
DBSCAN-SWA_11 4469962 : 4484087 17 Morganella_phage(22.22%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage