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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP049196 Escherichia coli strain E118 chromosome, complete genome 5 crisprs cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,RT,WYL,PD-DExK 0 9 13 0

Results visualization

1. NZ_CP049196
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049196_1 527324-527962 Orphan I-E
10 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049196_2 555100-555674 TypeI-E I-E
9 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049196_3 1738999-1739122 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049196_4 2678095-2678186 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049196_5 3983314-3983463 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP049196_4 4.1|2678121|40|NZ_CP049196|CRISPRCasFinder 2678121-2678160 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP049196_1 1.9|527841|32|NZ_CP049196|CRISPRCasFinder,CRT 527841-527872 32 KT898133 Aeromonas phage phiARM81ld, complete genome 45655-45686 2 0.938
NZ_CP049196_2 2.4|555309|35|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT 555309-555343 35 NZ_CP037443 Klebsiella sp. PO552 plasmid p2, complete sequence 42676-42710 2 0.943
NZ_CP049196_3 3.1|1739042|38|NZ_CP049196|CRISPRCasFinder 1739042-1739079 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP049196_1 1.3|527475|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT 527475-527506 32 NC_016040 Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence 37866-37897 6 0.812
NZ_CP049196_1 1.5|527597|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT 527597-527628 32 KC821619 Cellulophaga phage phi18:1, complete genome 6924-6955 7 0.781
NZ_CP049196_1 1.5|527597|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT 527597-527628 32 KC821627 Cellulophaga phage phi18:2, complete genome 6924-6955 7 0.781
NZ_CP049196_1 1.1|527353|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT 527353-527384 32 NZ_CP045381 Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence 107507-107538 8 0.75
NZ_CP049196_1 1.1|527353|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT 527353-527384 32 NZ_CP019631 Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence 199281-199312 8 0.75
NZ_CP049196_1 1.4|527536|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT 527536-527567 32 MN855878 Bacteriophage sp. isolate 336, complete genome 5171-5202 8 0.75
NZ_CP049196_1 1.9|527841|32|NZ_CP049196|CRISPRCasFinder,CRT 527841-527872 32 MN901520 Halorubrum coriense virus Hardycor2, complete genome 16524-16555 8 0.75
NZ_CP049196_1 1.5|527597|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT 527597-527628 32 NZ_CP020483 Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence 383-414 9 0.719
NZ_CP049196_2 2.5|555370|35|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT 555370-555404 35 NZ_CP038863 Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence 20152-20186 12 0.657

1. spacer 4.1|2678121|40|NZ_CP049196|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 1.9|527841|32|NZ_CP049196|CRISPRCasFinder,CRT matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 2, identity: 0.938

gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
gacgacgagacgccctggtgcgccgcgttcgt	Protospacer
*****.**************.***********

3. spacer 2.4|555309|35|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.943

tcggcgagtaagagtactgagtattttaatctcat	CRISPR spacer
acggcgagtaagagtgctgagtattttaatctcat	Protospacer
 **************.*******************

4. spacer 3.1|1739042|38|NZ_CP049196|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 1.3|527475|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.812

tgcacgccctgccggaatctcccctcgctctc	CRISPR spacer
tgcacgccctgccggaagatcccctcacgatt	Protospacer
*****************  *******.*  *.

6. spacer 1.5|527597|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT matches to KC821619 (Cellulophaga phage phi18:1, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

7. spacer 1.5|527597|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT matches to KC821627 (Cellulophaga phage phi18:2, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

8. spacer 1.1|527353|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

9. spacer 1.1|527353|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

10. spacer 1.4|527536|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

agtaagccggttgattatcgcca----gggatatta	CRISPR spacer
agtaagcaggatgattatcgccaccatggcgt----	Protospacer
******* ** ************    ** .*    

11. spacer 1.9|527841|32|NZ_CP049196|CRISPRCasFinder,CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 8, identity: 0.75

--gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
ccgccgcc--gacgctcgggtgtgccgcgttcgg	Protospacer
  * ** .  *****.* *************** 

12. spacer 1.5|527597|32|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020483 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence) position: , mismatch: 9, identity: 0.719

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
acttttattgttttgagtgaaaataaaggcta	Protospacer
* .*********** ** ******** *    

13. spacer 2.5|555370|35|NZ_CP049196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.657

tcggccatagactttattaacttcattgggggtta	CRISPR spacer
atcgccatagaattttttaacttcattgcctaaag	Protospacer
 . ******** *** ************   .  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 210217 : 276839 42 Staphylococcus_phage(18.18%) transposase,protease NA
DBSCAN-SWA_2 572032 : 579172 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_3 1200790 : 1209100 9 Enterobacteria_phage(83.33%) NA NA
DBSCAN-SWA_4 1221672 : 1285517 72 Escherichia_phage(35.42%) plate,integrase,head,tRNA,capsid,lysis,tail,terminase,portal,holin attL 1248854:1248880|attR 1281203:1281229
DBSCAN-SWA_5 1332921 : 1340439 7 Escherichia_phage(42.86%) NA NA
DBSCAN-SWA_6 1768343 : 1900494 153 Enterobacteria_phage(34.29%) integrase,head,protease,tRNA,capsid,lysis,transposase,tail,terminase,portal attL 1786219:1786235|attR 1906656:1906672
DBSCAN-SWA_7 2049072 : 2157119 102 Escherichia_phage(50.91%) integrase,tRNA,transposase,tail,terminase,holin attL 2075808:2075824|attR 2156252:2156268
DBSCAN-SWA_8 2244865 : 2314588 77 Enterobacteria_phage(28.57%) integrase,head,protease,capsid,transposase,tail,terminase,portal,holin attL 2262809:2262836|attR 2314725:2314752
DBSCAN-SWA_9 2430905 : 2489346 75 Escherichia_phage(38.18%) integrase,head,tRNA,capsid,lysis,tail,terminase,portal,holin attL 2439098:2439112|attR 2489448:2489462
DBSCAN-SWA_10 2561252 : 2626899 59 Stx2-converting_phage(18.75%) transposase NA
DBSCAN-SWA_11 3530164 : 3592450 52 Escherichia_phage(22.22%) tRNA,plate,transposase,protease NA
DBSCAN-SWA_12 3941936 : 3989444 36 Stx2-converting_phage(10.0%) tRNA,transposase NA
DBSCAN-SWA_13 4773243 : 4787368 17 Morganella_phage(22.22%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage