CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049090	Glaesserella parasuis strain aHPS7 chromosome, complete genome	3 crisprs	DEDDh,PD-DExK,DinG,cas2,cas3	2	2	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049090_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049090_1

312790-312902

Orphan

Consensus_repeat	Method
TATAAATAATTGTCGGGCAAAAATGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049090_1

>merge|NZ_CP049090|1|312790-312902|CRISPRCasFinder
TATAAATAATTGTCGGGCAAAAATGCCTAACTTTGCGGTATTTTATAAATAATTGTCGGGCATAAATGCCTAACTTTGTGGTATTTTATAAATAATTGTCGGGCATAAATGCC

>NZ_CP049090|1|1|312790-312902|CRISPRCasFinder
TATAAATAATTGTCGGGCAAAAATGCC	TAACTTTGCGGTATTTTATAAATAATTGTCGGGCATAAATGCCTAACTTTGTGGTATTT
TATAAATAATTGTCGGGCATAAATGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049090.1\|WP_021113345.1\|310323_311193_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|183240
NZ_CP049090.1\|WP_005711013.1\|312910_313825_-\|N-acetylglucosamine-kinase	unknown	unknown	gnl\|CDD\|183967
NZ_CP049090.1\|WP_160405238.1\|321675_322659_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP049090.1\|WP_016527473.1\|318556_319423_+\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NZ_CP049090.1\|WP_021113356.1\|312032_312740_-\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP049090.1\|WP_005711012.1\|313827_314550_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|182658
NZ_CP049090.1\|WP_021114122.1\|314843_316118_-\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|224091
NZ_CP049090.1\|WP_005711009.1\|317675_318557_+\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NZ_CP049090.1\|WP_160405230.1\|300481_302926_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	unknown	unknown	gnl\|CDD\|181856
NZ_CP049090.1\|WP_021113366.1\|303315_304110_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NZ_CP049090.1\|WP_021114484.1\|324113_325016_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP049090.1\|WP_021114128.1\|304137_304605_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP049090.1\|WP_160421841.1\|319422_321636_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP049090.1\|WP_005711010.1\|316264_317482_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738
NZ_CP049090.1\|WP_021113351.1\|305648_306452_-\|outer-membrane-family-protein	unknown	unknown	gnl\|CDD\|225381
NZ_CP049090.1\|WP_005711021.1\|304623_305649_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858
NZ_CP049090.1\|WP_160405232.1\|308994_310314_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|182723
NZ_CP049090.1\|WP_021114126.1\|306526_308944_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|236834
NZ_CP049090.1\|WP_021118496.1\|311210_311924_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|259850
NZ_CP049090.1\|WP_016527523.1\|325005_326031_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745

Protein	Function_ID	Function_description	E-value
NZ_CP049090.1\|WP_021113345.1\|310323_311193_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|183240	PRK11624, cdsA, phosphatidate cytidylyltransferase.	6.54284e-96
NZ_CP049090.1\|WP_005711013.1\|312910_313825_-\|N-acetylglucosamine-kinase	gnl\|CDD\|183967	PRK13310, PRK13310, N-acetyl-D-glucosamine kinase; Provisional.	0
NZ_CP049090.1\|WP_160405238.1\|321675_322659_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	1.05503e-147
NZ_CP049090.1\|WP_016527473.1\|318556_319423_+\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	1.0709e-58
NZ_CP049090.1\|WP_021113356.1\|312032_312740_-\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	8.18307e-107
NZ_CP049090.1\|WP_005711012.1\|313827_314550_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|182658	PRK10699, PRK10699, phosphatidylglycerophosphatase B; Provisional.	1.96001e-40
NZ_CP049090.1\|WP_021114122.1\|314843_316118_-\|isochorismate-synthase	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.39925e-116
NZ_CP049090.1\|WP_005711009.1\|317675_318557_+\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	2.32296e-64
NZ_CP049090.1\|WP_160405230.1\|300481_302926_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	gnl\|CDD\|181856	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional.	0
NZ_CP049090.1\|WP_021113366.1\|303315_304110_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	5.71221e-166
NZ_CP049090.1\|WP_021114484.1\|324113_325016_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.07371e-08
NZ_CP049090.1\|WP_021114128.1\|304137_304605_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	3.21937e-88
NZ_CP049090.1\|WP_160421841.1\|319422_321636_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP049090.1\|WP_005711010.1\|316264_317482_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NZ_CP049090.1\|WP_021113351.1\|305648_306452_-\|outer-membrane-family-protein	gnl\|CDD\|225381	COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis, outer membrane].	2.16283e-09
NZ_CP049090.1\|WP_005711021.1\|304623_305649_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	0
NZ_CP049090.1\|WP_160405232.1\|308994_310314_-\|RIP-metalloprotease-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	1.41408e-151
NZ_CP049090.1\|WP_021114126.1\|306526_308944_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|236834	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional.	0
NZ_CP049090.1\|WP_021118496.1\|311210_311924_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|259850	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases. Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.	2.649e-132
NZ_CP049090.1\|WP_016527523.1\|325005_326031_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	8.51705e-50

>NZ_CP049090.1|WP_021113356.1|312032_312740_-|hydroxyacylglutathione-hydrolase
MLQITPIPALSDNYIWILQKERQAIIVDPAEAQAVLAFLAKHQLNPTAILLTHNHHDHTDGVAGLVAQFPDMLIYGSEEVSQFANQIVYPEQQFELLGLKVRVIESAGHTAQHISYLIENEYLFCGDALFSGGCGRVFTGDYQAQFDALQRFKALPDFVQVYAGHEYTQSNLKFAEVVMATNCVLMEYQERADILRSQYKPTLPSTIGIEKQINPFMQAVTLDEFISLRKQKDNF
>NZ_CP049090.1|WP_021118496.1|311210_311924_-|di-trans,poly-cis-decaprenylcistransferase
MDIEPQLMPQHVAIIMDGNGRWAKQQGKLRIFGHQNGVKAVRSAINFAAKHGIKVLTLYAFSSENWSRPKAEVSALMTVFMKALDYEVKKLHKNNIRLKIIGDKSALSESLQNRIAQSEALTANNTGLMLNIAGNYGGYWDITQATKQIALQVKNGELSVDEITPDYFQRHLVTEDQPQVDLLIRTSGEQRISNFLLWQIAYAELVFSPVLWPDFDEKAFTDAIIAYQQRDRRFGGC
>NZ_CP049090.1|WP_021113345.1|310323_311193_-|phosphatidate-cytidylyltransferase
MLKERILSAIVMIILAVVALFWLSPLAFTIGLSAIVVLGMWEWAQFAGFKRPIARAIVAFVVTCLLIFPIMAGTSYIQATRFLTDETTPLLFIGGFWWLVASALVVSYPKSADVWAKSVVAKFIFGFCTLIPFLIGTLALRFYQYNLDQYQGTYLLLYVFLLVWGADSGAYFAGRAFGKHKLAPKVSPSKSWEGAIGGVITSAVIATIFLSVVPANVFGRELNTSAFVVLSVITVAISILGDLSESMFKRQVGIKDSSNLIPGHGGILDRIDSLTAAVPIFAIGFFFFL
>NZ_CP049090.1|WP_160405232.1|308994_310314_-|RIP-metalloprotease-RseP
MTSMLAFFILICVLVFVHEYGHFWAARKCGVKVLRFSIGFGKVLWRKKDKQGTEFAFSLIPLGGYVQMHNGETEHQLPDSQSLHTKSVLQRAFIVLAGPVANFLFAILAYWAVFNVGVPTVKPVIGSVIPDSIAAYAKLETELEIKTVDNRSVQDWEDVTLALLGKIGEAEVVIEGNHIDENISRQFTLDLRNWNVDGNKENPLTTLGIRPKSATVEPIIKNVVENSVSARSGILAGDKIISVNQQPFEWRYLLEQVQTGNIIDLTIERNNQQLAFQLQPEYSKEDERYLIGLVPTYQPLESKYRSELKYDILSAFGKSLEKVVSLSYTILQFIGNLITGELSLSNMGGPISMAKGAGATAEIGFVYYLGFMALISVNLAVMNLFPILPLDGGQLVLLTGEAVRRKPVPEAFQLRFQQIGGMFVVGLMLFALFNDLIHF
>NZ_CP049090.1|WP_021114126.1|306526_308944_-|outer-membrane-protein-assembly-factor-BamA
MKKLLLSTLLVANGVAFASPFVIKDIRIDGIQTSVSQTMIPTLPVKVGQLATDNDIANVIRHLFVQNRFQNISATREGDILIIKVVENPVINNVDIEGNSAIPKEPLEQNLKANLITKGELFNSTKLDAFKSALIEHYHSIGRYNATIDTVITNSDNGGVNIKLDIKEGDVAYVKAINFEGNQAFTSKVLMKQLDIQPDVSWFNIFQSSKFEQTAYNQDLENLRNFYMNQGYAKFNVEAEQPVFSDDKKEVSLTYKINEGIPYTVSEIRIIGNTAKLDNELNEQLKYYKTGELFSKNELSKIEDNIKQVFGNNGFASAKIELHPTFDDTNKTIRLTFVVDAGQRVYVRQIRFEGNDVTADSTLRREMRQQEGAWLSTSLAALGKARLERTGFYDSVEMSYPNVPNTADQVDIVYKIKERNTGSINFGVGYGTESGLSYQAGIKQDNFLGMGSTISLNGTRNDYGTSINLGYTEPYFTKDGVSLGGNIFYEDYDNSKNNSVASYKRQTYGVNSTLGFPVNEYNSYFLGLGYTQDLIKNAQREFNRELYVQSMKFPIDNDLNVYKKIEANDFDFSFGWNYNSLNRGFLPTEGTLTSISGRITTPGSDNKYYKVSIDFKNYLPVNREHKWVISTKANIAYANGFSGKELPFYQTYTAGGIGSLRGFAYGAIGPKAIYLGKDNNGNIRFNSVNGDIVGGNAMASATLELITPTPFVSEKYQHNVRTSLFVDAATVLNTKWKTNPVVNDIQYNYSSLENFKDYKRFRASTGIAFQWNSPIGPLVFSYAKPIKKYQGDEIEQFQFSIGGSF
>NZ_CP049090.1|WP_021113351.1|305648_306452_-|outer-membrane-family-protein
MKNLFKLAAVASALAFSANTVNANEKIGFVDPNFLIQNHPLTIEANDKFTKFMKDTESKFAPREKQLAAENKALSDEEKALLDERKKIEEDAQKLQKEQVTLEAAMKKKVAQLEKDAPRLKAKEIQARQDKINAEAKPFQNKVSALQQREVEFGKKAEEFQKRADEFQKKVAAFQEEIAKVQKESGVITPEQVQQKVVEDINAKIKQVAESKGYTLVLPPSVALYAKDGNAADITEEILVAMGGKMPEAPKTQAPAAEVTKPEEVKK
>NZ_CP049090.1|WP_005711021.1|304623_305649_-|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MAEFRLIELAEQIGGTLKGNADLAILSIAPLDKATSNQITFISNAKYRPQLAQCQAGAIIVSEADVEFCAEGQNLIVVGNPYVAYAILAQYMDTTPNPAENIAESAVISPDAKLGHNVSVGANAVIESGVEIGDDAVIGAGCFVGKNSKIGARTKLWANVSVYHNVQIGSDCLIQSSAVIGSDGFGYANEKGQWIKIPQTGGVIIGNRVEIGACTCIDRGALDPTVIEDNVIIDNLCQIAHNVHIGYGTAIAGGVVMAGSLKVGRFCQIGGASVINGHMEICDGAIITGMGMVMRPITEKGIYSSGIPLQTNKEWRKTAALVMNIDEMNKRLKALEKRLAE
>NZ_CP049090.1|WP_021114128.1|304137_304605_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MTTKLQTENREPRIIEVTEIMEMLPHRYPFLLVDRVVDFKEGKWLRAVKNVSVNEPCFTGHFPNQPVFPGVLILEAMAQATGVLAIKSYGKLKENELYYFAAVDNARFKRPVVPGDQMIIEVTFVKERRGITAFTGKVYVDDTLVCEADLMCARK
>NZ_CP049090.1|WP_021113366.1|303315_304110_-|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MQLIDASAKIHPTALIEEGAKIGANVEIGAFCVIGKDVRIGAGTKIHSHVVIQGDTEIGEDNQIFQFASIGEINQDLKYQGEPTKTIIGHRNRIRESVTIHRGTVQGGGVTRVGNDNLFMINCHIAHDCSIGNRCIIANNGTLAGHVTLDDFVIVGGMSAIHQFVVVGSHVMLGGGSMVSQDVPPYVMAQGNHAQPFGVNLEGLKRRGFEKATMHAIRNVYKLIYRSGKTLEEAIPEIEQYAKTEAAVSLFLDFFKRSRRGIIR
>NZ_CP049090.1|WP_160405230.1|300481_302926_-|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I
MRVLKLGGTSLANPERFLQAADIIEKAHLADQAAGVLSAPAKITNHLVAVVDKAQTGESYESHLTEATDIFNNIINGLYAVNNNFDREGLSAFIKAELDDICNIAAEAAKNKFCPDNIGATVHSRGEKLSIAMMKAWFEAKGYEVTRVDPVEKLLANGSYLESSVDIAESTKRIEALSIPKKNVVLMAGFTAGNEQGELVLLGRNGSDYSAACLAACLKADVCEIWTDVDGVYTCDPRLVPDAICLESMSYQEAMELSYFGAKVIHPRTIGPLVPLNIPCLIKNTHNPEAAGTIINGNVVNDNLKVKGITNLDNVAMFNVSGSGMQGMVGMAARVFTAMSQAGISVNLITQSSSEYSISFCVPVKAVEKALTALNSTFAQELKEGLLDPVEVIKDLSIVSVVGDGMRTAKGIAARFFSALAQANISIVAIAQGSSERSISAVVPLNKAIEAVKATHKALFNNKKVVDVFLVGVGGVGGELIEQITTQKEYLAKKDIEIRVCALANSNKMLLNENGLSLDNWRADLESATQPSDFDVLLSFIKLHHVVNPVFVDCTTAQSVANLYSRALKEGFHVITPNKKANTSSYAYYQEMRENARQSQHKFLYETNVGAGLPVIENLQNLLAAGDEVEKFEGILSGSLSFIFGKLEEGATLSEATNIAKEKGFTEPDPRDDLSGQDVARKLLILARECGYPLELGDIEVEGVLPKGFSEGKTAAEFLAMLPELDAEFAKRVENATACGNVLRYVGSIENGKCRVAIKEVNGDDPLYKVKNGENALAFYTRYYSPIPLLLRGYGAGNDVTAAGIFADILRTLK
>NZ_CP049090.1|WP_005711013.1|312910_313825_-|N-acetylglucosamine-kinase
MVYYGLDIGGTKIELAAFNEKLEKLHSERVPTPQTSYEDWLRTVETLVRNADAKFGEQGTVGLGVPGFVNHKTGLAEIANIAVVHGNKIIQDLEARLGREVRVENDANCLALSEAWDESNLQYSTVLGLIIGTGFGGGIVLNGKAHSGQIGMAGEVGHIQLNYHALKLLGWDKAPIYKCGCGNMACLDSYISGRGFEMLYNDLVGEKVDAKNIIQRFYDKDEKTVEFVEKYIELMAISVANYITVLDPDMIVFGGGLSNFDYIYEALPKALPKYLLRNAEVPVIKKAIHGDSSGVRGAAALFLK
>NZ_CP049090.1|WP_005711012.1|313827_314550_-|phosphatase-PAP2-family-protein
MVKKLSFLTLLMLFIPATAWLIGWQWNLQTNLGVNVFDWALFILTETGSTPYALITCVLFMLWLMWLARTRYSWFLVGFICATSVVGTQAIKEGAKAVFKEPRPFVTQMFQADTEAFYALPKAEQETAVLKFVQPENQFVVEHQADELGYSFPSGHTIFGVSWLLMFAGLLFGIRGQAVIFAQFFVILWAGLMLISRLRLGMHYPIDLFVSTLIAWVFHLIIFLWVIPLLEKWILFKKRG
>NZ_CP049090.1|WP_021114122.1|314843_316118_-|isochorismate-synthase
MSVFSQLKQQLYQQLQQKPVAQGLVQLQAEIAIDLENQQLLAWLKAQPLFPHYYWQNRDTEQTIVAVGAVQTFEHLDDVEQFSKQSDLMVVGGIEFEGQCHFVLPRLLLVKNEKKITAWLNLDGRHFESEQKECIALLAQFEQTAELHPIENSLLSTKVACDFSRWQHNIELAIEQIQQQQMNKVVLANATTKTFTHHISPYVLLFASQQKNLGCYHFLWSEKQGEAFIGSTPERLYLRQQRQFFTEALAGTVAVTDDPVQTEQNALWLLNDQKNIYENWLVVDDICSHLADCATDIQVSDAEIKRLHNVQHLRRKIQTQLTEQVSDADCLARIHPTAAVAGLPRPKAKQFIQQQECFERGWYAGALGYFTPEQAEFCVMLRSALIQANQITFYAGAGIVEKSDPQSEWQEIDRKAQAMAGLME
>NZ_CP049090.1|WP_005711010.1|316264_317482_+|pyridoxal-phosphate-dependent-aminotransferase
MERFAKTDKLAHVRYDIRGPIHKEATRLEEEGHKILKLNIGNPAPFGFEAPAEILVDVIRNLPTAQGYCDSKGLYSARKAIVQYYQLKGMRDLDVGDVYIGNGVSELITMSMQALLNDGDEILIPMPDYPLWTAAATLAGGKAVHYLCDEENEWFPDIEDIKSKITPRTKAILVINPNNPTGAVYSRQLLLDIVAIAREHNLIIFSDEIYEKIVYDGAVHHHLAPLAPDLLTVTYNGLSKAYRVAGFRQGWMVLNGPKNQAKGFIEGLDMLASMRLCANTPMQHAIQTALGGYQSINEFILPGGRLLEQRNKAHELLTKIPGISCVKPKGAMYMFPKIDTEMYGIKDDQKFVYDLLQQEKVLLVQGSGFNWHKPDHFRVVTLPYVDQLEEAIGRLAKFLQSYRQD
>NZ_CP049090.1|WP_005711009.1|317675_318557_+|EamA-family-transporter-RarD
MIKGITFSVTASILFGVLYYLSTHLKPLSGEEIYGFRMWVSLPFVISALFIFKKNDEFNRYLKRLKQHPHLILVLLTTTAVTGSQMWLFLYAPNNGYAIDVSIGYLLMPIAMVAVGRFLFNETLSLLKIISIISASVGVFITLMTAGSLSWATSMVLIGYPVYFSLRKHFDMSHLSSFVCEIILMLPIATYFMLNTDMQFVTENNPNFYFWLVLLGIVSGTALIGYIMASSLVPINVLGLLSYIEPLAMLIVAFIIGEVLDQSSYILMVCLMLSICLLVLDGIIAIRKQRRGE
>NZ_CP049090.1|WP_016527473.1|318556_319423_+|EamA-family-transporter-RarD
MLKGILFSLSANILFGAGYYFAVLLRPLESDSIFGFRIVVLMPFILLAIFLFHQQKAFKDLYYRVKQTPYLIFILLLLALNTAIQLWLFLWAPNNNQAIEVSIGYLLLPIVAVALGKLVFKEHFTLLKWLALFFATIGVTINIFLTASISWATFVAGFGYPIYIVLRRYFHINNLATFFVELLLLLPFAIYYIAQVDQASILMQNEYLYFYLALLGLVNGMAFILYIASSNLLPINVLGLLGYAEPLVMLFISFAIGEVLDAKSYILMACLAVSIILLSVDSFRKVKP
>NZ_CP049090.1|WP_160421841.1|319422_321636_+|primosomal-protein-N'
MNLIRIALPVPLARYFDYLLPTHFENVVKGARVVVPFGRQRKIGIVVDFPTTSDIPTEKLKPIEQLLDEQALFDAEMWQLLQWASRYYHAPFGEVLQSALPVKLRQGESSERTAPDYFVVTENGRKALANGVVQKAKKQQELLSKLAEFANFFEKPTACSPAVWKALFEKGYLEKLEIPFNVQSWQEKLGEQPICNTQNRLTLNKQQTLVVSRLHYQQGFGAFLLNGVTGSGKTEVYLQVIEEVLKRGEQVLVLVPEIGLTPQTIQRFQARFNVEIDALHSHLNDTQRLNAWLRAKNGESAIVIGTRSALFTQFQQLGLIIIDEEHDGSFKQQDGWRYHARDLAVLRAKNNNIPIILGSATPSFESLQNVQNGKFIELQLTARAGNAHFSKQTLIDLKKQRIYSGLSEKLLAMMQAHLEKGNQVMLFLNRRGFAPVLLCHECGWIADCPSCDKPFTYHQKQRVLRCHHCASQKAIPRQCGHCGSVNLITTGIGTEQLEQVLAQRFPQYSITRIDRDSTARKGSLEQHLAEIQAGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSSLFSTDYRAEERLAQLYVQVSGRAGRAEKQGEVVLQTHYPDHPLLTSLLNDGYLAFASQALAMRKIMSLPPFSSQVLIRATGRDNDKVANFLQDLTACLHQIISENGWQGFQLLGPFNAPMAKKAGHYRWQLLIQHSARSAIQQLLDRFDEQKEQFLRNDIRLTVDIDPQELG
>NZ_CP049090.1|WP_160405238.1|321675_322659_-|thiamine-ABC-transporter-substrate-binding-subunit
MKFKFFTLSALTLTTATVYAEQPTLTVYTYDSFASKWGPAAELEPLFEKQCQCNLKFMPFEDGVTMFNRIRLEKNKTKADVMLGIDHFLMPEAEKSGLFVEHNLQNNANNLPLEWRSKIFLPYDFGEYAFIYNKEKVSNPPKSLKELVERQDLKVIYQDPRTSTVGRGLLFWVNQVYGEQAESAWQNLAKHTVTVGKGWSETYGAFLKNEADLVLSYTTSPLYHQWHEQTDKYVAADFAEGHLVQVEVAAITKSSRQLKLAQQFLSFLQQPESQRIISYYNVMKPVVTTKADPLFNTLPTYQTISFTLPDNSEIKRWINTWLNTVSQ
>NZ_CP049090.1|WP_021114484.1|324113_325016_+|DMT-family-transporter
MGNDSFIRFSYVLLMGFGFPIMRYMSIHFDTLNNNAVRFLSGGLLFVFICILKYRTELLKLLREPSIILYLLLLAIFMTGNMYFFINGLKYTSALAGSIFGIMSMPLAVIMAAIFFQDEREKVKQKSFYIGSVLSVIGSLIFVIYSNKTGGGNDFITGSLFLGTAIFIQSIQNLFVKKVAKKLNAIVISASTATLSGLVYLLLASNTGVIYQLQDISSGLLIGLIFAGMYGMLTGMLFAFYIVQKQGVVVFNIIQLTVPLSTAFIGYFTLGETISIYQGFGAAIVIVGCVISLRKKSHGD
>NZ_CP049090.1|WP_016527523.1|325005_326031_+|Gfo/Idh/MocA-family-oxidoreductase
MEINMYNVGVIGLGLIAYGIDKDPNRKIIWSHIKAYKSIENIRISSVCDVKKSLVDSIQKECDIPNGYTDYKEMLKSNKFDIVSICTPIQTHFDIIKECIKNGVKVIFCEKTISYSLEESKEIVELCDKHNVIIAVNYIFRWDNLIQEIKGLLDSNAIGNIYSLVGYGATALHTSTSHLIDLLLYFSGSDIEYVVGDIQKDFVRNVHGISDVGGTGMIKFKSNSIGFIKGTSSSPMKYMFELDILGENGRIRLYNNGSSYDLYKFSSSENSSGSKYEHLDLVYSKHNTTPNERMIDAILSLIEGIETGKQPVSNIKTAIESIEVIESIKLSSMNGNIIKFQ

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Crispr_ID: NZ_CP049090_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049090_2

624602-624794

Orphan

Consensus_repeat	Method
ACCCTGCGGTCCTCGTGGTCCTGCTGGACCCGCAGGAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP049090_2

>merge|NZ_CP049090|2|624602-624794|PILER-CR
ACCCTCAGGGCCTCGTGGTCCTGCTGGACCCGCTTGTCCTGGTTCGCCTTTATCCCCCTTCTGTCCCGGAGTACCCGGTATTCCTTGCGGTCCTCGTGGTCCCATTGGACCCGTAGGTCCAGTTGCACCTGCAGAGCCAGTTTCTCCTCGCTCACCCTGCGGTCCTCGTGGTCCTGCTGGACCAGCAGGACCA

>NZ_CP049090|2|1|624602-624794|PILER-CR
ACCCTCAGGGCCTCGTGGTCCTGCTGGACCCGCTTGTCCT	GGTTCGCCTTTATCCCCCTTCTGTCCCGGAGTACCCGGTATTCCTTGCG
GTCCTCGTGGTCCCATTGGACCCGTAGGTCCAGTTGCACC	TGCAGAGCCAGTTTCTCCTCGCTCACCCTGCGGT
CCTCGTGGTCCTGCTGGACCAGCAGGACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049090.1\|WP_015940165.1\|609492_609807_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP049090.1\|WP_005712726.1\|630256_632041_+\|fumarate-reductase-(quinol)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236421
NZ_CP049090.1\|WP_164689398.1\|612770_615863_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP049090.1\|WP_010785933.1\|639563_639872_-\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|234765
NZ_CP049090.1\|WP_021117944.1\|612018_612438_-\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|182337
NZ_CP049090.1\|WP_021112084.1\|633239_633584_+\|fumarate-reductase-subunit-FrdD	unknown	unknown	gnl\|CDD\|180105
NZ_CP049090.1\|WP_016528237.1\|632830_633226_+\|fumarate-reductase-subunit-FrdC	unknown	unknown	gnl\|CDD\|235327
NZ_CP049090.1\|WP_005714128.1\|617449_617845_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP049090.1\|WP_160404626.1\|633902_634658_-\|sulfate-transporter-CysZ	unknown	unknown	gnl\|CDD\|179898
NZ_CP049090.1\|WP_160404627.1\|635649_637677_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP049090.1\|WP_021112088.1\|637734_639564_-\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|182933
NZ_CP049090.1\|WP_010785946.1\|618074_619094_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
NZ_CP049090.1\|WP_164689401.1\|616266_617364_+\|porin-OmpA	unknown	unknown	gnl\|CDD\|236764
NZ_CP049090.1\|WP_160421783.1\|610168_610999_+\|transposase	unknown	unknown	gnl\|CDD\|225865
NZ_CP049090.1\|WP_021112083.1\|632047_632818_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|183490
NZ_CP049090.1\|WP_026917125.1\|634767_635586_+\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|234977
NZ_CP049090.1\|WP_164689403.1\|620387_623054_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP049090.1\|WP_005712712.1\|639954_640584_-\|repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP049090.1\|WP_021112079.1\|619186_620074_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271191
NZ_CP049090.1\|WP_160404850.1\|608566_609196_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|236665

Protein	Function_ID	Function_description	E-value
NZ_CP049090.1\|WP_015940165.1\|609492_609807_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	5.79287e-44
NZ_CP049090.1\|WP_005712726.1\|630256_632041_+\|fumarate-reductase-(quinol)-flavoprotein-subunit	gnl\|CDD\|236421	PRK09231, PRK09231, fumarate reductase flavoprotein subunit; Validated.	0
NZ_CP049090.1\|WP_164689398.1\|612770_615863_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	7.99819e-95
NZ_CP049090.1\|WP_010785933.1\|639563_639872_-\|iron-donor-protein-CyaY	gnl\|CDD\|234765	PRK00446, cyaY, frataxin-like protein; Provisional.	1.90762e-49
NZ_CP049090.1\|WP_021117944.1\|612018_612438_-\|hotdog-fold-thioesterase	gnl\|CDD\|182337	PRK10254, PRK10254, proofreading thioesterase EntH.	4.66318e-43
NZ_CP049090.1\|WP_021112084.1\|633239_633584_+\|fumarate-reductase-subunit-FrdD	gnl\|CDD\|180105	PRK05470, PRK05470, fumarate reductase subunit FrdD.	6.01633e-51
NZ_CP049090.1\|WP_016528237.1\|632830_633226_+\|fumarate-reductase-subunit-FrdC	gnl\|CDD\|235327	PRK04987, PRK04987, fumarate reductase subunit FrdC.	8.06499e-59
NZ_CP049090.1\|WP_005714128.1\|617449_617845_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	1.14061e-71
NZ_CP049090.1\|WP_160404626.1\|633902_634658_-\|sulfate-transporter-CysZ	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	3.60499e-128
NZ_CP049090.1\|WP_160404627.1\|635649_637677_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP049090.1\|WP_021112088.1\|637734_639564_-\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|182933	PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional.	0
NZ_CP049090.1\|WP_010785946.1\|618074_619094_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_CP049090.1\|WP_164689401.1\|616266_617364_+\|porin-OmpA	gnl\|CDD\|236764	PRK10808, PRK10808, outer membrane protein A; Reviewed.	2.29958e-113
NZ_CP049090.1\|WP_160421783.1\|610168_610999_+\|transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000673615
NZ_CP049090.1\|WP_021112083.1\|632047_632818_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|183490	PRK12385, PRK12385, succinate dehydrogenase/fumarate reductase iron-sulfur subunit.	0
NZ_CP049090.1\|WP_026917125.1\|634767_635586_+\|cell-division-protein-ZipA	gnl\|CDD\|234977	PRK01741, PRK01741, cell division protein ZipA; Provisional.	2.08454e-118
NZ_CP049090.1\|WP_164689403.1\|620387_623054_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP049090.1\|WP_005712712.1\|639954_640584_-\|repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	3.93744e-110
NZ_CP049090.1\|WP_021112079.1\|619186_620074_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271191	cd01191, INT_C_like_2, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	8.71321e-55
NZ_CP049090.1\|WP_160404850.1\|608566_609196_+\|LysE-family-transporter	gnl\|CDD\|236665	PRK10229, PRK10229, threonine efflux system; Provisional.	1.29197e-35

>NZ_CP049090.1|WP_164689403.1|620387_623054_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLVEISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADKFIFMATASGTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGMGRVATGVRGIKLATTEISVDDAEEVDIETVENEEAEEASSVNLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIENLSVEEA
>NZ_CP049090.1|WP_021112079.1|619186_620074_-|tyrosine-type-recombinase/integrase
MSTNIKYNVISKYNHENNIEKNIFKLLTRKQRKEIRIFESYLFEQERAQNTIRSYIAGVTKFFIGYKEINKTNLILYKKYLIENYSPQTVNIRISAINYYLSLKQMDHYKLKHIPLPKYHFTEGIMSFPEYKTLCDYLKEHNLRYYFIVRFLGSTGARISELVKFTIQDLEKGYAECHSKGKFRRINIPQSLINESREFFQNHKKELFLNRYGAPISARGIAHNLKIYAEKCGIRKDVVHPHNFRHFFAIQFLKKNNNIALLADLLGHSNVNMTALYLRLSHSEQREAINNAVNW
>NZ_CP049090.1|WP_010785946.1|618074_619094_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAIKIGINGFGRIGRIVFRAAQKRDDIEVVGINDLIDVEYMAYMLKYDSTHGRFDGTVEVKDGKLVVNGKEIRVTSERDPANLKWNEIGVDIAVEATGLFLDDTTARKHIEAGAKKVVLTGPSKDSTPMFVNGVNFNAYAGQDIVSNASCTTNCLAPLARVIHETFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTANVSVVDLTVNLEKPASYEEIKKAIKDAAEGKTFNGELKGVLGYTEDAVVSTDFNGAVETSVFDADAGIALTDTFVKLVSWYDNETGYSNKVLDLVAHVYNYKG
>NZ_CP049090.1|WP_005714128.1|617449_617845_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MIKDISELTEEQIEICLNAGTEKPFSGKFLKENRVGTYRCVRCHNALFRSDAKFDAGCGWPSFYETISESSLRYVDDYSLGRHRVEIRCGNCDAHMGHVFKDGPQPTGLRFCLNSIALNFKWDQTGEEIDG
>NZ_CP049090.1|WP_164689401.1|616266_617364_+|porin-OmpA
MKKSLIALAVSGLAVASVANAAPQANSFYVGAKAGWATFHNDINQLNSKYKNDARYATGRTDLGINRNSVTYGVFGGYQIIDNLAVELGYDYFGRVRGNKQEFRAFKHSAHGTHLSLKPSYEVLNGLDVYGKVGAALVRNDYKRYFQTREPVKSHNLKTSLIVGAGVEYAILPELAFRVEYQWLSNVGNFTKAEVKENRRATYNYSPDSHSVTAGISYRFGQGAAPVAAAPEVVTKNFAFSSDVLFDFGKANLKPAAAQTLDAAHTEIVNLGLANPAVQVNGYTDRIGKDAANLTLSQKRAETVANYIVSKGVNPANVTAVGYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGSKEVSM
>NZ_CP049090.1|WP_164689398.1|612770_615863_-|FAD-binding-oxidoreductase
MIPRLANIPQLNPLVQQYLAELKQQHFSGDIASNYADRLSLTTDNSVYQQLPQAILFPKSVADVVILTKLAQKTAFQALTFTPRGGGTGTNGQSLNNNIIVDLSRHLTQILELNVQERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINTDASGQGSLQYGKTSDHILTIKAVLMNGDILETQAVKTDDFFANVDQLNLTANGKKLHSEIFQRCQALRPTVLKELPQLNRFLTGYDLKNVFNDDLSEFNLTRILTGSEGSLAFICEAKLNLLPLPEYRTLINIKYNSFDAALRSAPFMLQAQALSVETVDSKVLNLAKQDIVWHSVSDLLSEDEHNPILGINIVEYASNDKAQNEARIAKLCQALDEKIQNGTSGIIGYQLCNDLASIEKIYAMRKKAVGLLGNTKGWAKPIAFVEDTCVPPEHLADYIVEFRQLLDDHGLDYGMFGHVDAGVLHVRPALDLCDKAQVAKFKAISDQVVELTAKYGGLIWGEHGKGMRSAYGERFFGETLWKELRYIKQLFDPQNRLNPGKICTPLDSQASLYPIDSQMRADLDRQIPIQVREAFKGAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLFSPKGRATLVREWLRLLAEQNVSPDELIFEKQQTSAKLVDFAKKIRNQWRKSQEYDFSHEVKSAMDTCLACKACASQCPIKIDVPTFRSQFNELYHRRYLRPLKDYVVANLEFVAPLMAKQPKLFNFFSANKLAETVASKTIGMVDLPALSVPTLQQQLVEIGYQGKTLEELEQLVTSGQLDTEICKYVLVVQDPFTSYYDAKVVADFVQLAQKLGFKAIVLPFNPTGKAQHIKGFLHKFANTARTQAELLNRVAKLGIAMVGVDPALTLIYREEYRQILKDDCGEFKVLLAHEWLLAQLKNGTLDHCKKSAETDRLPWHLFAHCTESTSLPNSLKEWQQIFAHFGETLTAENIGCCGMAGTFGHETKHLAMSKGIYAQSWQVKLQGKTLSRCLATGYSCRSQVKRMEHQLLKHPVQALLEVI
>NZ_CP049090.1|WP_021117944.1|612018_612438_-|hotdog-fold-thioesterase
MIWKKNTTIEQLNQLCQHSAISHLGIEFTAQQNDSLEATVSVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGTELNISHLKAIKSGKATGRATPLHLGKESQVWQVEIRDDAQQLCAVARLSIKLLSQR
>NZ_CP049090.1|WP_160421783.1|610168_610999_+|transposase
MFSLKNKLDPIKIWTDYTSGKQTYQQLAVKYHCSVRTIQRYIDKAPKTTLKPTSNRYLNIIMDTTFFCRYFGVLVLMDSNSNNVISHYFVRTEKDIYYKLALNRLREKGYIIQSITCDGRRGLMKDLFNTPVQMCQFHMVAIVMRKLRKKHQSQVGKELKIITKTLTKSSKNEFYRRLHSWFIKYQVFLKERSNKANEKGYFPYKHRNERSVYASLIRYMDYIFTYEKHSELNIEKTTNRLEGLFSELKRKLNNHNGLAKKHKMLFIQDFLNKKSC
>NZ_CP049090.1|WP_015940165.1|609492_609807_+|thioredoxin
MSTVIHTTDASFEQDVLKSDVPVLLDFWAPWCGPCRAIGPVLDDLAINLGNKARIVKMNVDENQQIPAEFGVRSIPFLLIFKNGEVVAQQVGAQNLPAFLEHLS
>NZ_CP049090.1|WP_160404850.1|608566_609196_+|LysE-family-transporter
MWTIFFVQLLGLISPGPDFFYVSRKAMADTRRNAILGAIGISIGVAFWALLTLFGLAFLNKHFPSFQFVLMICGGSYLAYSGIQMVQITKNAEIGSATSTSQATSTVKEILKGLMINLANPKIVVFFSSVLAGYVANLSALADLLAVLAILVGSAVVYFWLVALLFSRPAIRHFYAKYNRYLDNFAGAVFILFGGKLVYEGVFRLWIFS
>NZ_CP049090.1|WP_005712726.1|630256_632041_+|fumarate-reductase-(quinol)-flavoprotein-subunit
MQTVNVDVAIVGAGGGGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGAAAVAKEEDSYDKHFHDTVAGGDWLCEQDVVEYFVEHSPVEMTQLERWGCPWSRKADGDVNVRRFGGMKIERTWFAADKTGFHLLHTLFQTSIKYPQIIRFDEHFVVDILVDDGQVRGCVAMNMMEGTFVQINANAVVIATGGGCRAYRFNTNGGIVTGDGLSMAYRHGVPLRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPVGKPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLHERLPFICELAQAYEGVDPAKAPIPVRPVVHYTMGGIEVDQHAETCIKGLFAVGECASSGLHGANRLGSNSLAELVVFGKVAGEMAAKRAVEATARNQAVIDAQAKDVLERVYALARQEGEESWSQIRNEMGDSMEEGCGIYRTQESMEKTVAKIAELKERYKRIKVKDSSSVFNTDLLYKIELGYILDVAQSISSSAVERKESRGAHQRLDYVERDDVNYLKHTLAFYNADGAPTIKYSDVKITTSQPAKRVYGAEAEAQEKAAKKE
>NZ_CP049090.1|WP_021112083.1|632047_632818_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MTNQSKMTVEVLRYNPEQDNEPYLSKYEVPYDSQTSLLDALGYIKDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYRGYMRIEPLANFPIERDLVVDLSHFIESLESIKPYIIDNKAPELDGKPHPSAELAKSRTKQTPAQLEKYRTFSMCINCGLCYAACPQFGLNPEFVGPAALTLAHRYNLDNRDNGKAERMKIINGKNGVWSCTFVGYCSEVCPKHVGPASAVNQGKIESAKDYVFAMLKPQK
>NZ_CP049090.1|WP_016528237.1|632830_633226_+|fumarate-reductase-subunit-FrdC
MTTTASKRKKYVREVKPTWWKALDFYKFYVLRESTSVPTIWFCLVLFYGLACLGKENGFVENFIPFLQNPLVVVLNIITLGAVLLNSFTFFGMAPQMMNVIVKNERIDVKLVSRVFWGITAFVSLLALILV
>NZ_CP049090.1|WP_021112084.1|633239_633584_+|fumarate-reductase-subunit-FrdD
MDKLNPPRSNEPAVWLLFGAGGAISAIFFPVLVLILGFLLPFGLITPDNIIAFAHTWIGKLAILALLIFPMWCGMHRVHLGLHDFKIHVPAGGWIFYGLSALYSVLVIFAVINL
>NZ_CP049090.1|WP_160404626.1|633902_634658_-|sulfate-transporter-CysZ
MSSLFSTPETQIGAGFHYFIYGWRLMLQRQLMPFIIFPVIINAVLMISLIWLFFANVGGMLDSLLPSWLEWLSFILIPLAFLMVLVAFYFAFTTLANFIAAPFNALLAEKVEQQLTGENLTEMSFNEMLKDVPRMLKREWQKMWYSIPRLIALFLLGFIPVLGQTIIPILTFIFGAWLIAIQYCDYPFDNHKIQFQRMRNALAQYRTMNFTFGALVSIFTMLPFINLVVMPVAVCGATAMWVNEYKRALHD
>NZ_CP049090.1|WP_026917125.1|634767_635586_+|cell-division-protein-ZipA
METHILFFILAGLLIAVLIGYSIWSARREKSRIFSNTFSTRPPSSPINNEITADIPTTLNPQGVVAQQPFNTETPADFIQSQQEVENSVKNIRISLQTQEISQPLYQETMPESPSEAYQQNQIQEQTVQVEQVETIEQTTEHNIITLYVVAPEGVQFQGNAIVQNLEMLGFHFGEYQIFHRHLDNPASPVLFSVANMMQPGVFDLARMEQFSTVGLVFFMHLPSVGNDLANLKLMIRTVESFAQSVGGFVLDEQHQIFNDESRQNYLLRVAN
>NZ_CP049090.1|WP_160404627.1|635649_637677_+|NAD-dependent-DNA-ligase-LigA
MPHSIETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQYPELITSDSPTQRVGAKPLDGFAQITHEIPMLSLDNAFSDDDLTGFLRRIEDRIAINSNQIEFCCEPKLDGLAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKSSNPPHRLEVRGEVFMPQQGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLMLNAYNIGVYESDDELPTTHFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNKIVLQEQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIAIGDTVIIRRAGDVIPQIVGVVAERRLDNAKKIAFPTACPVCNSAVVRVEGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELIRTPADLFKLDHTTLMRLERMGEKSANNALQSIEKAKNTTLARFLFALGIRDVGESTAQNLANHFGTLDAIRQADLDTLKQVQDVGEVVANRLFQFWQEPHNIEVVEDLIAQGVKWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALLQQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELIGYFTTIVS
>NZ_CP049090.1|WP_021112088.1|637734_639564_-|ATP-dependent-DNA-helicase-RecQ
MSVIPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQLLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCNSRKKVEELTEKLSSRRFSVMGYHAGMTMQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICLDPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQNIVNHSALQLTEQARPILRGETALALASPRFSFSATTYVQKQQASKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATLQEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIACD
>NZ_CP049090.1|WP_010785933.1|639563_639872_-|iron-donor-protein-CyaY
MNLAEFHQAIEQVWEHIEEQLEEQGCDVDCETQGAVFTITFDDDSQIVINKQEAMLELWLASKLGGYHFAYRDGDWVSAEGRSFWTHLEEAVARHGEKISFS
>NZ_CP049090.1|WP_005712712.1|639954_640584_-|repressor-LexA
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDEEGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEVTVKRLEKKGDLIYLHPENDELEPIIIDPRQSYIEIEGIAVGVIRSNAWM

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Crispr_ID: NZ_CP049090_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049090_3

993087-993183

Orphan

Consensus_repeat	Method
CTGGCCCTGCGGGCCCAGCAGGGGCTAAGGGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049090_3

>merge|NZ_CP049090|3|993087-993183|CRISPRCasFinder
CTGGCCCTGCGGGCCCAGCAGGGGCTAAGGGTGAGCGAGGAGAAACAGGCCCTGCAGGTGCAGCTGGACCTGCGGGCCCAGCAGGGGCTAAGGGTGA

>NZ_CP049090|3|2|993087-993183|CRISPRCasFinder
CTGGCCCTGCGGGCCCAGCAGGGGCTAAGGGTGA	GCGAGGAGAAACAGGCCCTGCAGGTGCAG
CTGGACCTGCGGGCCCAGCAGGGGCTAAGGGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049090.1\|WP_164689476.1\|1005319_1007629_+\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP049090.1\|WP_160405344.1\|980992_981826_-\|GPO-family-capsid-scaffolding-protein	unknown	unknown	gnl\|CDD\|368675
NZ_CP049090.1\|WP_160405346.1\|983778_984750_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|222860
NZ_CP049090.1\|WP_164689473.1\|1002039_1003647_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NZ_CP049090.1\|WP_160439247.1\|1007810_1008080_-\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|113736
NZ_CP049090.1\|WP_160404749.1\|999232_1001890_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP049090.1\|WP_010786883.1\|998356_998851_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP049090.1\|WP_005711597.1\|1003764_1005189_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP049090.1\|WP_082259296.1\|996244_997339_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP049090.1\|WP_035497013.1\|988753_989902_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP049090.1\|WP_021110830.1\|979242_979905_-\|phage-small-terminase-subunit	unknown	unknown	gnl\|CDD\|368680
NZ_CP049090.1\|WP_005711608.1\|995641_996151_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|182734
NZ_CP049090.1\|WP_164689469.1\|986231_988235_-\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	unknown	unknown	gnl\|CDD\|234978
NZ_CP049090.1\|WP_021115823.1\|978444_978651_-\|phage-Tail-protein-X-family-protein	unknown	unknown	gnl\|CDD\|283209
NZ_CP049090.1\|WP_021113125.1\|978650_979127_-\|head-completion/stabilization-protein	unknown	unknown	gnl\|CDD\|368674
NZ_CP049090.1\|WP_005711610.1\|994863_995574_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP049090.1\|WP_021114907.1\|985334_986105_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|182741
NZ_CP049090.1\|WP_160404751.1\|997390_998356_-\|asparaginase	unknown	unknown	gnl\|CDD\|199208
NZ_CP049090.1\|WP_035522665.1\|981992_983771_+\|terminase	unknown	unknown	gnl\|CDD\|222859
NZ_CP049090.1\|WP_160405342.1\|979912_980959_-\|phage-major-capsid-protein,-P2-family	unknown	unknown	gnl\|CDD\|368296

Protein	Function_ID	Function_description	E-value
NZ_CP049090.1\|WP_164689476.1\|1005319_1007629_+\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP049090.1\|WP_160405344.1\|980992_981826_-\|GPO-family-capsid-scaffolding-protein	gnl\|CDD\|368675	pfam05929, Phage_GPO, Phage capsid scaffolding protein (GPO) serine peptidase. This family consists of several bacteriophage capsid scaffolding proteins (GPO) and some related bacterial sequences. GPO is thought to function in both the assembly of proheads and the cleavage of GPN. The family is found to function as a serine peptidase, with a conserved Asp, His and Ser catalytic triad, as in subtilisin, and as represented in MEROPS:S73. The family includes capsid assembly scaffolding protein from Enterobacteria phage P2 which cleaves itself and then becomes the scaffold protein upon which the bacteriophage prohead is built - a mechanism quite common amongst phages.	7.31206e-135
NZ_CP049090.1\|WP_160405346.1\|983778_984750_+\|phage-portal-protein	gnl\|CDD\|222860	PHA02536, Q, portal vertex protein; Provisional.	1.40911e-173
NZ_CP049090.1\|WP_164689473.1\|1002039_1003647_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NZ_CP049090.1\|WP_160439247.1\|1007810_1008080_-\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|113736	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC). The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).	0.00705825
NZ_CP049090.1\|WP_160404749.1\|999232_1001890_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP049090.1\|WP_010786883.1\|998356_998851_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	2.0737e-89
NZ_CP049090.1\|WP_005711597.1\|1003764_1005189_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP049090.1\|WP_082259296.1\|996244_997339_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	3.08532e-159
NZ_CP049090.1\|WP_035497013.1\|988753_989902_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP049090.1\|WP_021110830.1\|979242_979905_-\|phage-small-terminase-subunit	gnl\|CDD\|368680	pfam05944, Phage_term_smal, Phage small terminase subunit. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences.	1.94766e-60
NZ_CP049090.1\|WP_005711608.1\|995641_996151_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	7.59482e-80
NZ_CP049090.1\|WP_164689469.1\|986231_988235_-\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	gnl\|CDD\|234978	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC.	0
NZ_CP049090.1\|WP_021115823.1\|978444_978651_-\|phage-Tail-protein-X-family-protein	gnl\|CDD\|283209	pfam05489, Phage_tail_X, Phage Tail Protein X. This domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to pfam01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis.	1.52505e-13
NZ_CP049090.1\|WP_021113125.1\|978650_979127_-\|head-completion/stabilization-protein	gnl\|CDD\|368674	pfam05926, Phage_GPL, Phage head completion protein (GPL). This family consists of several phage head completion protein (GPL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids.	1.51924e-59
NZ_CP049090.1\|WP_005711610.1\|994863_995574_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.6293e-148
NZ_CP049090.1\|WP_021114907.1\|985334_986105_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|182741	PRK10799, PRK10799, type 2 GTP cyclohydrolase I.	1.29505e-124
NZ_CP049090.1\|WP_160404751.1\|997390_998356_-\|asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	6.7901e-128
NZ_CP049090.1\|WP_035522665.1\|981992_983771_+\|terminase	gnl\|CDD\|222859	PHA02535, P, terminase ATPase subunit; Provisional.	0
NZ_CP049090.1\|WP_160405342.1\|979912_980959_-\|phage-major-capsid-protein,-P2-family	gnl\|CDD\|368296	pfam05125, Phage_cap_P2, Phage major capsid protein, P2 family.	1.00883e-169

>NZ_CP049090.1|WP_035497013.1|988753_989902_+|methionine-adenosyltransferase
MAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPDINQGVDRANPLEQGAGDQGIMFGYATNETEVLMPAPVTYAHRLMEQQAKVRKSGKLDWLRPDAKSQLTFIYEDNKIKGIDAVVLSTQHAEHVDQKTVFEGVMEEIIKPVLPSEWLSQNTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGIAEPTSIMVETFGTGKVSNEVLVRLVREHFDLRPYGLIKMLDLIRPIYRETAAYGHFGREHFPWEKTDKAEALKSALR
>NZ_CP049090.1|WP_164689469.1|986231_988235_-|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC
MSKITFASLNFNQSNTPVSAQFDDIYFSTQDGLAESHYVFQEGNQLWEKWQRHPRSFFVIAETGFGTGLNFFAVAEKFKAFLAEYPTSPLKRLYFISFEKFPIKTEQLQQIHQHYPQFANFSAQLTACWQPRQSGCQRYHFEQIYLDIWFGDLLENLPQLGDYYNNLIDCWFLDGFSPDKNPEMWNETLYQQMFRLTQAGGSFATFTASSNVRRGLQAVGFEVKKRKGFGKKREMLWGEKPDNQTENSIRFPYFYQSNQTESDDVAIVGGGIASLAVALSLLERGKQVTLYCKDEQLAKNASGNLQGAIYPQLSDDDERNVRFYVHSFDYALQRFKQLAQAVTFEHDFSGVALYAYNDKTAHKLQKMAEQGWDSELYQLCSAQDLSEKIGLTVQNGGAFIAQGGWLSPVQFVQNAFALLQQRGLKVVLNHQVENPVWLAGKWQWQHQGQTFAHQTLVLANGHLLTDFAQSHGIPLYPVRGQVSQIPTTEALSKLKCVVCYDGYLTPISAQQTHCIGASHLRDNADEQFSLVEHEQNIAKLQQNLTACEWTQQLDFSGNLAKVGIRAAFRDRVPMVGAVPDFEAQKTQYANLYNQFRRREPIETANCYPNLYLVAGLGSRGLTTAFLLGELLASQICGEPLPLSQDILQGLSTNRTWIRNLLRGREIT
>NZ_CP049090.1|WP_021114907.1|985334_986105_+|Nif3-like-dinuclear-metal-center-hexameric-protein
MLINLQLEQILDEKLNSKAIADYAPNGLQVEGRREIRKIITGVTASLPLIEQAIAKRADAILVHHGYFWKSENPCIRGMKGKRIKQLLVNDINLFGYHLPLDMHAELGNNAQLAKHIGVKNLQGLEDKALSIPVYGELDEAISAQELANRLEKALKRKPILCDEFIADFPQKLIKTVAICTGGGQGYIDLAANKQIDAFISGEISEQTTHSAREQGIYYFACGHHATERDGVKALGEWLAKEYGLEVEFIDIDNPA
>NZ_CP049090.1|WP_160405346.1|983778_984750_+|phage-portal-protein
MKIEQFTFGDPTPVLDNADILNYFESVLMYEKYYNPPVDFSGLARAVKSSAHHQSALAVKKNILMSTCQTSPLLPRYELEKVVQDYLIFGNAYLEKRMGKEKQILGLNAPLAKYVRRGREQGKFFLLANGYQEYEFPSDSVFHLKQPDVNQEIYGLPDYLASLQSAFLNESATLFRRKYYLNGAHAGSIIYMTDPMASETDVDDLKEQLQQAKGKGNFKNLFLYAPDGKENGIKVIPLSDVVAKDEFLNIKNTSRDDILAAHRVPPQLMGIIPNNTGGFGDIEKAGKVFFINEILPLQQRLAEINQWLGKEVITFNPYILLEQ
>NZ_CP049090.1|WP_035522665.1|981992_983771_+|terminase
MTDIATNQAEKTALINMNTHREAQLKYWAGYSLTEIAKMLNIPVSTIASWKKREKWDEAPLFERVSGNIESRYMLLLQKDVKTGYDFKELDFLMRQMKDAARIQKYNNGGNEADLNPKIQNRNRGERKPAEKNPISPEQEELLINGFMQGMFQYQRNWYQAGEKHRIRNILKSRQIGATYYFAHEAFIDALKTGRNQIFLSASKKQALMFRSYITQYARKTADVELKGETILLPNGAELIFLGTNSATAQSYHGNLYFDEIFWVAKFDEMRKVASAMASQKQYRQTYFSTPTTIAHSAYDFWSGKAFNRDRPESERVEIDISHANLRAGKLCADRQWRQIVNIYDAELGGCNLFNIDDLKFENSTAEFEQLFMCQFADDNSSVFKYDELQHCQVDSYDEWKDFKPFYQRPFGNREVWIGYDPAFTGDRAALAIIAPPRVEGGDYRVLHTETFHGLDFEKQADKIRHYTQSYNVTKITIDRTGMGDGVYQNVKKFFPRAVGITYNVDLKNEMVLKTLNLIQKKRLKFDGKEIATSFMTIKKQTTRSGRQMTYVSDRSAEASHGDIAWAIMSCLVNEPYGNAQASKRTIIPFNN
>NZ_CP049090.1|WP_160405344.1|980992_981826_-|GPO-family-capsid-scaffolding-protein
MGTKSKWFVVATEGATTDGRVINRTWIEQMAKNYDPKNTYGARVNLEHLHFRLYWKDEPHSQCYGDVLAVKAEEREDGKLQLLAEIAPTPELIELNKKGQKVYTSIEVDPNFADTGEAYLVGLAVTDNPASLGTEMLKFAAGASQNPFNARKIKPENLFTAAVETVLEFEEVNEKKVEPSLFDKVKTLLTGKSKKDDERFHDQAQAVELLSNHLAEVSEKYATLQTQAVEHEQKVAKLSSDLTALQSRVDVIGSEPEHGYTPRPEITGGPAVIETDC
>NZ_CP049090.1|WP_160405342.1|979912_980959_-|phage-major-capsid-protein,-P2-family
MKNETKQLYNAYVARIAHLNGVTADDVKEGFTVQAAPEQKLKEKVLQSAQFLQWINTPTVTNMKGEMIGLGVAQTIASTTDTAKQDRQTKDLLNLDKRTYNCEQVNFDSHIRWARLDEWAKHPDFQEKVASQTQKTIALNLIMMGWNGTSRAATSNPSSNTLLQDVKKGWLQQLREDTGGTKVMSGADTENKIKVGKGQGTGENAGKGYENLDALVTDAVNNLIHEVYAEDTDLVVICGREVLHDKYFTMINQDLKPTDQLASQVIVSQKQIGGLKAIRVPFFPKNAMLITRLDNLSIYMQEGTTRRFIQNNPKRDRIEDYLSQNIDYKIEDYECAALIENIVLEDVK
>NZ_CP049090.1|WP_021110830.1|979242_979905_-|phage-small-terminase-subunit
MERLSPAQIHLRKASAALAHSNEQVLLENLDEYEKMLYLLARHKKDLKAIASMEQRASYKKSILHHYLPWIEGALSAGNGKQDNVLMTWQVWSVDCGEYHLALQIADYAIHQDLTLPDGFSRSLCSMLAEEFADAAKKALKVQKPFEVSYLLRVDELTKEKDMPDESRARLYREIGLLLETTQPEKALSYLERALELNLNIGVQGSIKKLRKQLNQADTD
>NZ_CP049090.1|WP_021113125.1|978650_979127_-|head-completion/stabilization-protein
MSHVINIPKVVVDKNQVSSPTQITISNNGFFPDIELVEVRHAMRADGTVTDERLTFAVIEAMATVNAELHTLQMEYATFDDIPSDHINGENLMITRYKRAVFCFAMANLYERYRSFDSTKEGAEKAEQFENSVDDLRRDARFAIRDMLKRKRWTSELI
>NZ_CP049090.1|WP_021115823.1|978444_978651_-|phage-Tail-protein-X-family-protein
MILTATQHDTLDQLIFRHYSRTAGLVEIALEYNPQLANVAILEMGQRVEMPDITTTTTITKQTVSLWD
>NZ_CP049090.1|WP_005711610.1|994863_995574_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNNIDQQEVEKFEKMAKTWWDPQGDFKPIHLLNPLRLAYINDKTNGLFGKKVLDIGCGGGILSESMAGLGAIVTGIDMAADALLVARQHAESNHLNICYQQITVEDFLKQHCITDTEKFDIITCMEVLEHVPNPHSIIQSCKNLLKEDGLLFISTINRTAKAYMLIIIGAEYVLKMLPKGTHNFEKFIKPSELLRWCSQEDFECKEIVGYHFNPLTKNFWINKDINCNYIAVLQNS
>NZ_CP049090.1|WP_005711608.1|995641_996151_-|peptidyl-prolyl-cis-trans-isomerase
MVILHTNLGDIKIMLNFEKAPITSANFESYCKEGFYNNTIFHRVIDNFMIQGGGMEVGMIEKPTREPIKNEASNGLSNKRGSIAMARTADPHSATSQFFINVVDNAFLDYRTKELFGKTVVQEWGYAVFGEVVDGMDIVDKIKVISTHNYGWHTDVPKHDIVITSVSIE
>NZ_CP049090.1|WP_082259296.1|996244_997339_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MQKSTLYPPIYVLGNGQLGRMLRYAGMPLDIEVQPLAFDDPVFDLAENSLITAEIERWAETPLTNLLSNHKNFVNLSVFGQLADRFTQKSLLDQLNLSTSPWQLLSSPEQWQQVFENIGEKVVVKRRTGGYDGRGQWIVTKDNVEQITPDLFGDVIAEKFIPFDGEVSLVGARFRNGQTRFYPVTHSLQQNGILRYSVTDITLPHQQIFQQQAEQMLSAIMHELNYVGVMAMECFVVGEKLLINELAPRVHNSGHWTQLGCSISQFELHLRALLDLPTPELKPIAPSVMVNLIGIEHHNEWLDIPFSQLHWYGKEVRAGRKLGHINLCHPDKTVIIENLQKLKPYLSEDFYSGLDWVKNIIEHT
>NZ_CP049090.1|WP_160404751.1|997390_998356_-|asparaginase
MSKKLLILHTGGTISMSEGEDGKVSPSAQNPLLTALAKLNHPAQLYQKAILHVPSPHITLAHWQLLKDRIEQAVLAEGYDGIVITHGTDTLEETAYFLDLALKVNVPVAITGAMRSSNELGSDGLINLQSAILVALSDESQNKGVLVVMNDEIHNAKFVTKTHTTNVATFQTPTFGPCGLVTKNRAIYFQHLTAYERFPIDRLEKSNIQLVKAYVGMDSFLLEQLAQSRCDGVVVEALGAGNLPPSCLAGISALLNANIPVVLVSRAFNGITQDVYDYLGGGKQLKQQGVIFTQGLSGQKARIKLMVLLNQTLEKPLAEYF
>NZ_CP049090.1|WP_010786883.1|998356_998851_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MTTNIEIAIVMGSKSDWATMSEATQILNQFNIPYHVEVVSAHRTPDKLFEFAETAEQKGYKVIIAGAGGAAHLPGMIAAKTIVPVLGVPVKSSMLSGVDSLYSIVQMPKGIPVGTLAIGPAGAANAGLLAAQILGAFNPEIALKLRSFRNEQTQSVLDNPDPRI
>NZ_CP049090.1|WP_160404749.1|999232_1001890_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSEMLAHDVDPFETQEWLDSVNSLVKEEGTERAQFIIQQVMQHARTQGVGLPSGVTTDYVNTIPVSEQPVYPGNQEIERRIRSAVRWNAIAMVLRSQKKDLDLGGHISTFQSAATMYEVCFNHFFKAATDKDGGDLVYSQGHAAPGIYARSFLEGRLTAEQLDNFRQEAFADGLSSYPHPKLMPEYWQFSTVSMGLGPVNAIYQARFLKYLQNRGIKDTSGQTVYAFLGDGEMDEIESKGALTVAGREKLDNLIFVISCNLQRLDGPVNGNGKIVQELEGLFTGAGWEVIKVLWGSNWDKLFAKDTSGKLAQLMMEVVDGDYLTFKSKDGAYVREHFFGRYPETAALVADMTDEEIWKLRRGAHDTEKMYAAFERAKRSNKPAVILAHQVKGYKIPEAESKNTAHQSKKMSLDSLKGFRDYFHLPLTDEQVENLEYVTFPEGSEEYNYLHGRRKELNGYLPARKPKFDIEYQVPALSEFQALLDAQPRGISTTMAFSRVLNILLKDKNIGQTIVPIIADEARTFGMEGLFRQIGIYNPHGQNYVPSDRDLVAYYREATDGQVLQEGINELGATASWVAAATSYSVNNQPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGGTSGRTTLNGEGLQHEDGHSHIQAAVIPNCITYDPAFAFEVAVIVQDGINRMYGEKQEDVFYYLTTLNEITEQPAMPAGAEEGIRKGLYKFETVEGKGKGHVQLLSSGAIMRHVREAAQILANEYGVTADVFSAPSFNELGRDGADAARWNLLHPTETPRVPYVSQVLADLPTVASTDYMKLYAEQIRAYVPSKHYHVLGTDGFGRSDSRANLREHFEVDARYVVVAALSQLAKEGTVETKVVADAIAKFGLNVDRINPLYA
>NZ_CP049090.1|WP_164689473.1|1002039_1003647_+|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MSKQIQIPDIGGDEVTVTEVMVKVGDTIAADQSIINVEGDKASMEVPAPEAGVVKEVLVKVGDKVTTGSPMLVLEAAGSAPAPQAVAEAAPAPAAAPTASAVVDVNVPDIGGDEVNVTEIMVKVGDTVAVDQSIINVEGDKASMEVPAPIAGVVKEILVKVGDKVSTGSLIMKFEVAGAAPAAASAPAPQAAAAPAPVAVAPAQSGNVSGLSQEQVVASAVYAHATPVIRRLAREFGVNLDRIKGTGRKGRIVKEDIQAYVKTAVQVFEDVKSGKAPAAGNGVANGAGLGLLPWPKVDFSKFGEIEEVELSRINKISGANLHRNWAMIPHVTHFDRTDITDLENFRKEQNKLAEKQKLDVKITPVVFIMKAVAKALEAYPRFNSSISEDGQKLTLKKYINIGVAVDTPNGLVVPVFKNVNEKGIVELSRELMEVSKKAREGKLTAADMQGGCFTISSLGGIGTTHFTPIVNAPEVAILGVSKSEMMPQWNGKEFEPRLMLPLSLSFDHRVIDGADGARFLSYINGVLADIRRLVM
>NZ_CP049090.1|WP_005711597.1|1003764_1005189_+|dihydrolipoyl-dehydrogenase
MSQEIKTQVVVLGAGPAGYSAAFRCADLGLETVLVERYSTLGGVCLNVGCIPSKALLHVAKIIEEAKRAEHNGITFGEPTIDLDTVRAGKEAVVAKLTGGLAGMAKARKVTVVEGQATFADPHTLVARDRDGHPTTIKFDNAIIAAGSRPIQLPFIPHHDPRIWDSTDALKLKEIPKKLLIMGGGIIGLEMGTVYQALGSEVEVVEMFDQVIPAADKDVVAIFTKRIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPNGKLLDAGKAGVNVDDRGFIAVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGQKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASECADGMTKLIFDKDTHRLLGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKR
>NZ_CP049090.1|WP_164689476.1|1005319_1007629_+|RNA-binding-transcriptional-accessory-protein
MTELNHQISQIIAAELAVRSEQIFAAMTLLDEGNTIPFIARYRKEVTGGLDDTQLRHFETRLLYLRELNDRRQTILKSIEEQGKLTDELREKIEQTQSKTELEDLYLPYKPKRRTRGQIAIEAGLESLADSLWNDPSQVPETVAEAYVDAEKGVADVKSALDGARYILMERFSEDADLLAKLRQYLTANATLEAKVIEGKEEEGEKFRDYFAHSEPLKNVPSHRALAMFRGRNEGILSLNLNADPDAEEGSRSSYCEEIIREHLGVQLRQQPADSWRSQVIAWTWKIKALLHLETELMGALREKAEEEAIDVFARNLSALLMAAPAGARNTMGLDPGLRTGVKVAVVDNTGKLLDTATIYPHTGQMNAAMVTIYKLIKQHNVDLIAIGNGTASRETERFAKEVIKEIKENKPQTVVVSEAGASVYSASELAATEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQSQLARKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVAYRDENGRFNSRSDLKKVARLGPKAFEQCAGFMRILGGKNPLDASSVHPEAYPVVEKILQATASTLGELMGNSTKIHSLNAKDFVDEQFGLPTVNDIFKELEKPGRDPRGEFKTAIFMDGVEEISDLKVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISMLSNSFVEDPHQVVKTGDVVKVKVLEVDVARKRIALTMRLDDKPTDKRDTSGEKRKEFGKSDRSQKPERQSFGNNAFADALKGWKK
>NZ_CP049090.1|WP_160439247.1|1007810_1008080_-|dimethyl-sulfoxide-reductase-anchor-subunit
MGFSFAHILIQGVKTAIFTALDLVPDYLTITFIHFGLIIVDIVLLLVALKKRTTLISFSGFALILIGELLGRTLFYGLHMTVGLKALGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP049090_2	2.2\|624731\|34\|NZ_CP049090\|PILER-CR	624731-624764	34	NZ_CP049090.1	625198-625231	0	1.0
NZ_CP049090_3	3.1\|993121\|29\|NZ_CP049090\|CRISPRCasFinder	993121-993149	29	NZ_CP049090.1	991825-991853	1	0.966
NZ_CP049090_3	3.1\|993121\|29\|NZ_CP049090\|CRISPRCasFinder	993121-993149	29	NZ_CP049090.1	992140-992168	1	0.966
NZ_CP049090_3	3.1\|993121\|29\|NZ_CP049090\|CRISPRCasFinder	993121-993149	29	NZ_CP049090.1	992455-992483	1	0.966
NZ_CP049090_3	3.1\|993121\|29\|NZ_CP049090\|CRISPRCasFinder	993121-993149	29	NZ_CP049090.1	992770-992798	1	0.966
NZ_CP049090_3	3.1\|993121\|29\|NZ_CP049090\|CRISPRCasFinder	993121-993149	29	NZ_CP049090.1	2290799-2290827	1	0.966
NZ_CP049090_2	2.2\|624731\|34\|NZ_CP049090\|PILER-CR	624731-624764	34	NZ_CP049090.1	2290796-2290829	2	0.941

1. spacer 2.2|624731|34|NZ_CP049090|PILER-CR matches to position: 625198-625231, mismatch: 0, identity: 1.0

cagttgcacctgcagagccagtttctcctcgctc	CRISPR spacer
cagttgcacctgcagagccagtttctcctcgctc	Protospacer
**********************************

2. spacer 3.1|993121|29|NZ_CP049090|CRISPRCasFinder matches to position: 991825-991853, mismatch: 1, identity: 0.966

gcgaggagaaacaggccctgcaggtgcag	CRISPR spacer
gcgaggagaaataggccctgcaggtgcag	Protospacer
***********.*****************

3. spacer 3.1|993121|29|NZ_CP049090|CRISPRCasFinder matches to position: 992140-992168, mismatch: 1, identity: 0.966

gcgaggagaaacaggccctgcaggtgcag	CRISPR spacer
gcgaggagaaataggccctgcaggtgcag	Protospacer
***********.*****************

4. spacer 3.1|993121|29|NZ_CP049090|CRISPRCasFinder matches to position: 992455-992483, mismatch: 1, identity: 0.966

gcgaggagaaacaggccctgcaggtgcag	CRISPR spacer
gcgaggagaaataggccctgcaggtgcag	Protospacer
***********.*****************

5. spacer 3.1|993121|29|NZ_CP049090|CRISPRCasFinder matches to position: 992770-992798, mismatch: 1, identity: 0.966

gcgaggagaaacaggccctgcaggtgcag	CRISPR spacer
gcgaggagaaataggccctgcaggtgcag	Protospacer
***********.*****************

6. spacer 3.1|993121|29|NZ_CP049090|CRISPRCasFinder matches to position: 2290799-2290827, mismatch: 1, identity: 0.966

gcgaggagaaacaggccctgcaggtgcag	CRISPR spacer
gcgaggagaaactggccctgcaggtgcag	Protospacer
************ ****************

7. spacer 2.2|624731|34|NZ_CP049090|PILER-CR matches to position: 2290796-2290829, mismatch: 2, identity: 0.941

cagttgcacctgcagagccagtttctcctcgctc	CRISPR spacer
cagctgcacctgcagggccagtttctcctcgctc	Protospacer
***.***********.******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049090_3	3.1\|993121\|29\|NZ_CP049090\|CRISPRCasFinder	993121-993149	29	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1482276-1482304	8	0.724
NZ_CP049090_3	3.1\|993121\|29\|NZ_CP049090\|CRISPRCasFinder	993121-993149	29	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1399669-1399697	8	0.724
NZ_CP049090_2	2.2\|624731\|34\|NZ_CP049090\|PILER-CR	624731-624764	34	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	833118-833151	10	0.706

1. spacer 3.1|993121|29|NZ_CP049090|CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.724

gcgaggagaaacaggccctgcaggtgcag	CRISPR spacer
ccgaggagaagctggccctgcaggctggc	Protospacer
 *********.* ***********.  .

2. spacer 3.1|993121|29|NZ_CP049090|CRISPRCasFinder matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 8, identity: 0.724

gcgaggagaaacaggccctgcaggtgcag	CRISPR spacer
ccgaggagaagctggccctgcaggctggc	Protospacer
 *********.* ***********.  .

3. spacer 2.2|624731|34|NZ_CP049090|PILER-CR matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cagttgcacctgcagagccagtttctcctcgctc	CRISPR spacer
ccgttgcaggtgcagagccagtttctttgattgc	Protospacer
* ******  ****************..   . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27484 : 34928

Escherichia_phage(66.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160405355.1\|27484_28243_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	3.6e-61	49.8
WP_160405357.1\|28420_29329_+	NAD-binding protein	A0A077SLF7	Escherichia_phage	8.7e-110	71.1
WP_062924146.1\|29330_30572_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.7e-113	52.4
WP_160405359.1\|30568_31201_+	aldolase	A0A077SK32	Escherichia_phage	2.2e-64	59.5
WP_062924145.1\|31203_31986_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_005714107.1\|32010_32958_+	SDR family oxidoreductase	Q5YFR2	Singapore_grouper_iridovirus	1.0e-07	27.0
WP_082259179.1\|33719_34928_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.1e-49	47.6

DBSCAN-SWA_2

348979 : 413820

Enterobacteria_phage(11.76%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005713804.1\|348979_349501_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_021114110.1\|349637_350960_+	HslU--HslV peptidase ATPase subunit	A0A173GFL6	Erwinia_phage	7.3e-41	27.4
WP_160405478.1\|351091_352801_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_035490893.1\|352800_353568_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_021115075.1\|353576_353807_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_005713975.1\|355042_355228_-	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_160405625.1\|355224_355797_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_021118978.1\|355938_356268_+	hypothetical protein	NA	NA	NA	NA
WP_026916855.1\|356372_357443_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_010786760.1\|357444_358095_+	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA
WP_010786761.1\|358112_358592_+	redoxin family protein	NA	NA	NA	NA
WP_164689368.1\|360519_361446_-	hypothetical protein	NA	NA	NA	NA
WP_021118533.1\|361469_362069_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_021118534.1\|362079_363531_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_021117814.1\|363642_364539_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021111309.1\|364683_365364_+	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA
WP_071610548.1\|365450_366179_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	1.2e-42	45.1
WP_016528366.1\|366281_366485_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_075620746.1\|366497_367127_+	thiamine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-22	34.2
WP_021111312.1\|367190_367910_+	cell division protein FtsN	NA	NA	NA	NA
WP_005713919.1\|367924_368245_+	DUF2322 family protein	NA	NA	NA	NA
WP_160421891.1\|368321_369077_-	TonB family protein	NA	NA	NA	NA
WP_010787138.1\|369076_369463_-	TonB system transport protein ExbD	NA	NA	NA	NA
WP_021111314.1\|369505_369958_-	TonB-system energizer ExbB	NA	NA	NA	NA
WP_021111315.1\|370131_370458_+	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_021119257.1\|370519_371575_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	2.5e-20	29.5
WP_021119258.1\|371793_372768_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_005713908.1\|372787_373084_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_021111318.1\|373395_374169_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_035523990.1\|374171_374795_+	hypothetical protein	NA	NA	NA	NA
WP_160421893.1\|374794_376444_+	ubiquinone biosynthesis regulatory protein kinase UbiB	M4QMK7	Micromonas_pusilla_virus	9.8e-35	31.7
WP_160405457.1\|376501_376966_+	YchJ family protein	NA	NA	NA	NA
WP_160405459.1\|377011_378280_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_005713897.1\|378288_378723_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_021117826.1\|378719_379568_-	virulence factor BrkB family protein	NA	NA	NA	NA
WP_164689370.1\|379786_382129_-	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA54	Enterobacteria_phage	2.6e-57	42.7
WP_160421951.1\|382313_383564_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.3e-95	48.2
WP_021114290.1\|383753_385049_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_164689373.1\|385269_387834_+	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA54	Enterobacteria_phage	3.7e-57	42.7
WP_071610557.1\|388040_389711_+	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	2.5e-38	28.1
WP_160405580.1\|389807_391178_+	glutathione-disulfide reductase	NA	NA	NA	NA
WP_010787123.1\|391200_391788_+	hypothetical protein	NA	NA	NA	NA
WP_016528350.1\|391818_392433_-	7-carboxy-7-deazaguanine synthase QueE	A0A1V0DYC7	Dinoroseobacter_phage	1.3e-11	34.7
WP_160405578.1\|392432_392855_-	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	1.3e-20	39.9
WP_160405576.1\|392847_393507_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.9e-53	48.2
WP_078208384.1\|393787_394660_+	pirin family protein	NA	NA	NA	NA
WP_160405582.1\|395019_396309_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	6.0e-32	36.0
WP_160405574.1\|396363_396807_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_010787117.1\|396863_397616_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	7.6e-27	32.6
WP_015939768.1\|397615_398164_-	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_010787115.1\|398167_398392_-	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_016528344.1\|398734_400375_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_016528343.1\|400429_401173_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_021111338.1\|401216_401729_+	porin family protein	NA	NA	NA	NA
WP_164689376.1\|407875_408934_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_160405586.1\|409448_410402_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_035496815.1\|410487_411348_+	pyridoxal kinase PdxY	NA	NA	NA	NA
WP_021118421.1\|412672_412996_+\|transposase	transposase	Q716C1	Shigella_phage	3.7e-15	44.9
WP_071610673.1\|413034_413460_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	8.4e-07	28.8
WP_157834277.1\|413571_413820_+\|transposase	transposase	Q716C2	Shigella_phage	6.6e-20	58.7

DBSCAN-SWA_3

926951 : 1040920

Mannheimia_phage(41.67%)

tRNA,terminase,portal,tail,transposase,head,plate,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160421834.1\|926951_928640_-\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	1.2e-253	76.6
WP_149350859.1\|928822_929821_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_160421835.1\|929870_931601_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.3e-65	29.8
WP_021113497.1\|931729_932575_+	OmpA family protein	NA	NA	NA	NA
WP_062923840.1\|932664_933483_+	pyridoxal phosphatase	NA	NA	NA	NA
WP_021113499.1\|933495_934014_+	N-acetyltransferase	NA	NA	NA	NA
WP_005712271.1\|934124_935012_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_021113501.1\|935177_936680_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	3.4e-87	37.6
WP_021113502.1\|936836_937154_+	hypothetical protein	NA	NA	NA	NA
WP_010786853.1\|937144_937456_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010786852.1\|937494_938268_+	peroxide stress protein YaaA	NA	NA	NA	NA
WP_005712277.1\|938571_939297_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_005712279.1\|939391_940243_+	elongation factor Ts	NA	NA	NA	NA
WP_005712282.1\|940299_941115_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_035519425.1\|941307_941589_+	hypothetical protein	NA	NA	NA	NA
WP_160421836.1\|941662_944731_+	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
WP_010786847.1\|944732_945659_+	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_021116784.1\|945651_946320_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_078208143.1\|946552_947365_+	EfeM/EfeO family lipoprotein	NA	NA	NA	NA
WP_160405164.1\|947374_948352_+	Dyp-type peroxidase	NA	NA	NA	NA
WP_021118849.1\|948308_948497_+	hypothetical protein	NA	NA	NA	NA
WP_160405166.1\|948760_951073_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_160405168.1\|951342_953328_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_160405170.1\|953358_954648_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_016528014.1\|954787_956221_+	glycogen synthase GlgA	NA	NA	NA	NA
WP_005712302.1\|956372_957836_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	4.2e-98	40.7
WP_016528013.1\|957971_958604_+	DUF1919 domain-containing protein	NA	NA	NA	NA
WP_021113516.1\|958619_959465_+	inosine-5-monophosphate dehydrogenase	NA	NA	NA	NA
WP_160405172.1\|959530_959965_+	hypothetical protein	NA	NA	NA	NA
WP_021114834.1\|960202_961774_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_078208139.1\|961907_962378_+	DUF4102 domain-containing protein	G9L697	Escherichia_phage	2.3e-37	53.3
WP_005714586.1\|963663_963924_+	hypothetical protein	F6MIM3	Haemophilus_phage	1.6e-40	97.7
WP_160405338.1\|963964_964798_-	hypothetical protein	F6MIM2	Haemophilus_phage	2.4e-162	99.6
WP_160421855.1\|964852_964966_-	Com family DNA-binding transcriptional regulator	F6MIM1	Haemophilus_phage	3.5e-13	97.3
WP_026916661.1\|965115_965583_-	hypothetical protein	F6MIM0	Haemophilus_phage	6.0e-91	100.0
WP_021110846.1\|968660_969200_-\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	3.7e-52	55.8
WP_075604541.1\|969189_970104_-\|plate	baseplate assembly protein	Q19UQ5	Mannheimia_phage	3.5e-111	67.1
WP_021117005.1\|970100_970442_-	lysozyme family protein	A0A0M3LQ08	Mannheimia_phage	1.4e-28	66.7
WP_078208614.1\|970441_971014_-\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	2.0e-40	62.3
WP_021118249.1\|971139_971337_-	hypothetical protein	NA	NA	NA	NA
WP_021110841.1\|971450_971825_-	hypothetical protein	NA	NA	NA	NA
WP_021113101.1\|971805_972003_-	hypothetical protein	NA	NA	NA	NA
WP_164689466.1\|972097_974866_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	9.2e-78	31.7
WP_160421852.1\|974903_975158_+	hypothetical protein	NA	NA	NA	NA
WP_159179932.1\|975183_975645_-	phage virion morphogenesis protein	Q19UR2	Mannheimia_phage	7.9e-43	62.0
WP_021115817.1\|975644_976121_-\|tail	phage tail protein	Q19UR3	Mannheimia_phage	7.1e-39	52.3
WP_075630890.1\|976117_976336_-	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	2.3e-21	72.6
WP_021110837.1\|976451_976904_-	hypothetical protein	NA	NA	NA	NA
WP_021110836.1\|976881_977049_-	hypothetical protein	NA	NA	NA	NA
WP_021110835.1\|977257_977725_-	hypothetical protein	NA	NA	NA	NA
WP_021118207.1\|977709_978234_-	lysozyme	A0A0M3LQY4	Mannheimia_phage	6.9e-51	57.9
WP_042905694.1\|978217_978439_-	hypothetical protein	Q19UR7	Mannheimia_phage	1.7e-06	45.6
WP_021115823.1\|978444_978651_-	phage Tail protein X family protein	A0A0M3LPY0	Mannheimia_phage	8.4e-13	59.7
WP_021113125.1\|978650_979127_-\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	7.1e-39	53.9
WP_021110830.1\|979242_979905_-\|terminase	phage small terminase subunit	A4JWP8	Burkholderia_virus	1.3e-38	41.4
WP_160405342.1\|979912_980959_-\|capsid	phage major capsid protein, P2 family	A0A0M3LPD2	Mannheimia_phage	1.2e-99	55.9
WP_160405344.1\|980992_981826_-\|capsid	GPO family capsid scaffolding protein	Q19UT4	Mannheimia_phage	2.1e-70	53.4
WP_035522665.1\|981992_983771_+\|terminase	terminase	A0A0M3LRV4	Mannheimia_phage	2.0e-219	65.8
WP_160405346.1\|983778_984750_+\|portal	phage portal protein	Q19UT6	Mannheimia_phage	3.3e-115	60.7
WP_021114907.1\|985334_986105_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_164689469.1\|986231_988235_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_035497013.1\|988753_989902_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.6e-129	63.3
WP_164689471.1\|990433_994531_+	hypothetical protein	NA	NA	NA	NA
WP_005711610.1\|994863_995574_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_005711608.1\|995641_996151_-	peptidyl-prolyl cis-trans isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	4.0e-11	32.5
WP_082259296.1\|996244_997339_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_160404751.1\|997390_998356_-	asparaginase	NA	NA	NA	NA
WP_010786883.1\|998356_998851_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_160404749.1\|999232_1001890_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_164689473.1\|1002039_1003647_+	pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
WP_005711597.1\|1003764_1005189_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.4e-42	27.5
WP_164689476.1\|1005319_1007629_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_160439247.1\|1007810_1008080_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_016527721.1\|1008245_1009232_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	7.4e-22	32.7
WP_021118971.1\|1009521_1009881_-	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_021113580.1\|1010131_1011025_+	DMT family transporter	NA	NA	NA	NA
WP_062924515.1\|1011028_1011736_+	DUF218 domain-containing protein	NA	NA	NA	NA
WP_038513875.1\|1011833_1012406_+	Der GTPase-activating protein YihI	NA	NA	NA	NA
WP_021110807.1\|1012411_1012861_+	DUF2489 domain-containing protein	NA	NA	NA	NA
WP_062924456.1\|1012863_1014231_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_062924457.1\|1014298_1016632_+	LPS assembly protein LptD	NA	NA	NA	NA
WP_035494749.1\|1016717_1018952_+	response regulator	A0A1V0SGX0	Hokovirus	2.5e-41	30.0
WP_021110803.1\|1019110_1019473_+	diacylglycerol kinase	NA	NA	NA	NA
WP_035494746.1\|1019519_1021166_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
WP_043896688.1\|1023290_1025084_+	ABC transporter ATP-binding protein/permease	A0A1V0SE00	Indivirus	7.2e-07	26.2
WP_021112352.1\|1025107_1025425_-	XRE family transcriptional regulator	A0A1S5R3V5	Pseudomonas_phage	2.3e-09	44.7
WP_043896398.1\|1025421_1025763_-	hypothetical protein	NA	NA	NA	NA
WP_021118188.1\|1026099_1028229_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_164689479.1\|1028302_1029226_+	lipoprotein NlpI	NA	NA	NA	NA
WP_044008970.1\|1029606_1031439_+	DEAD/DEAH box helicase	A0A0N9Q9J4	Chrysochromulina_ericina_virus	1.9e-55	34.0
WP_043894448.1\|1031535_1032072_+\|tRNA	tRNA adenosine(34) deaminase TadA	A0A0B5J096	Pandoravirus	3.1e-06	32.0
WP_005711563.1\|1032053_1032488_-	DUF412 domain-containing protein	NA	NA	NA	NA
WP_021110792.1\|1032666_1033395_+	hypothetical protein	NA	NA	NA	NA
WP_021113566.1\|1033403_1033967_+	septation protein A	NA	NA	NA	NA
WP_005711558.1\|1033950_1034391_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_021110790.1\|1034402_1034699_+	YciI family protein	NA	NA	NA	NA
WP_164689667.1\|1035051_1037328_-	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_164689481.1\|1037642_1038068_+	universal stress protein	NA	NA	NA	NA
WP_021115993.1\|1038292_1040920_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.6

DBSCAN-SWA_4

1122464 : 1129634

Mannheimia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005712614.1\|1122464_1122743_+	peptidase	A0A0M3LQB1	Mannheimia_phage	5.3e-18	50.0
WP_035491783.1\|1122759_1123026_+	HigA family addiction module antidote protein	A0A2P1MXE5	Escherichia_phage	6.2e-08	43.4
WP_160405614.1\|1123089_1124310_+	ATP-dependent RNA helicase RhlB	E3T5E1	Cafeteria_roenbergensis_virus	2.0e-40	31.1
WP_160405613.1\|1124319_1125807_+	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	1.6e-81	45.4
WP_021115958.1\|1125960_1126503_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.9e-43	56.2
WP_038513981.1\|1126805_1129634_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	3.8e-305	56.0

DBSCAN-SWA_5

1149519 : 1221093

uncultured_virus(12.5%)

protease,transposase,integrase,tRNA

attL 1202538:1202597|attR 1219679:1220993

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021118097.1\|1149519_1150923_+\|tRNA	asparagine--tRNA ligase	A0A1V0SDB6	Indivirus	3.7e-83	37.7
WP_080716935.1\|1151100_1151373_+	hypothetical protein	NA	NA	NA	NA
WP_005712467.1\|1151366_1151627_-	DinI-like family protein	NA	NA	NA	NA
WP_160421875.1\|1151891_1152986_-	histidinol-phosphate transaminase	A0A142C026	Faustovirus	5.9e-20	26.3
WP_160421876.1\|1153020_1156185_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	4.1e-74	26.4
WP_160405394.1\|1157069_1158353_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_160405409.1\|1158345_1159998_-	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	3.1e-49	28.2
WP_160405396.1\|1160120_1161203_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	8.2e-83	45.9
WP_021114850.1\|1161268_1161676_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_005713671.1\|1161672_1161936_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_035519508.1\|1161999_1163325_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA
WP_021115922.1\|1163796_1164573_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_021112187.1\|1164672_1165398_+	response regulator	W8CYM9	Bacillus_phage	1.5e-32	37.6
WP_160429779.1\|1165466_1166843_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	5.5e-15	23.6
WP_021110668.1\|1166925_1167618_+	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_021116845.1\|1167618_1168815_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	6.9e-22	25.6
WP_021110666.1\|1169230_1170637_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_021110665.1\|1170648_1171254_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_160405400.1\|1171415_1171871_-	hypothetical protein	NA	NA	NA	NA
WP_160405404.1\|1172324_1172762_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_021110661.1\|1172987_1174337_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_005713654.1\|1174465_1174999_+	ribosome-associated protein	NA	NA	NA	NA
WP_160405407.1\|1175014_1175359_+	SirB2 family protein	NA	NA	NA	NA
WP_012621674.1\|1175381_1175612_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_021109470.1\|1176378_1178811_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	9.1e-114	34.7
WP_005713645.1\|1178891_1180049_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	7.0e-88	45.9
WP_021112157.1\|1180168_1180849_+	cytolethal distending toxin subunit A	A5LH52	Enterobacteria_phage	2.2e-25	34.4
WP_016528031.1\|1180857_1181691_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	4.3e-63	48.7
WP_164689516.1\|1181700_1182231_+	toxin	NA	NA	NA	NA
WP_160405465.1\|1182483_1183212_-	hypothetical protein	NA	NA	NA	NA
WP_021113910.1\|1183219_1183912_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_005713441.1\|1183974_1185042_-	3-deoxy-7-phosphoheptulonate synthase AroG	A0A2I6UFP9	Klebsiella_phage	1.2e-78	46.4
WP_021112184.1\|1185149_1187741_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	9.8e-82	44.4
WP_021110650.1\|1187750_1188233_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_010786825.1\|1188345_1189185_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	3.9e-40	38.8
WP_075631096.1\|1189201_1192060_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
WP_035524284.1\|1192221_1192659_-	hypothetical protein	NA	NA	NA	NA
WP_021113906.1\|1192659_1193226_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_164689518.1\|1193464_1194415_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.6e-125	82.8
WP_021112249.1\|1194726_1196103_+	Na+/H+ antiporter family protein	NA	NA	NA	NA
WP_021112197.1\|1196217_1197021_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_164689521.1\|1197761_1202450_+	hypothetical protein	NA	NA	NA	NA
1202538:1202597	attL	NA	NA	NA	NA
WP_082259179.1\|1202575_1203784_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.1e-49	47.6
WP_160421920.1\|1203839_1206101_+	replication endonuclease	Q19US8	Mannheimia_phage	1.0e-188	47.7
WP_021113043.1\|1206116_1206512_+	hypothetical protein	NA	NA	NA	NA
WP_021113115.1\|1206514_1206811_+	hypothetical protein	Q19US5	Mannheimia_phage	1.8e-19	57.1
WP_021113109.1\|1206779_1207037_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_021110873.1\|1207074_1208292_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	4.6e-58	34.5
WP_160405563.1\|1208737_1209970_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_012621765.1\|1210105_1210729_-	MarC family protein	NA	NA	NA	NA
WP_160421922.1\|1210808_1212722_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	6.0e-68	30.6
WP_021109709.1\|1212842_1213085_-	hypothetical protein	NA	NA	NA	NA
WP_160421924.1\|1213053_1214982_-\|protease	ATP-dependent zinc metalloprotease FtsH	G9E4U6	Ostreococcus_lucimarinus_virus	2.0e-116	43.2
WP_160421926.1\|1215055_1215682_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_005714049.1\|1215994_1216783_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_043894462.1\|1216899_1217322_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_164689524.1\|1217468_1218461_+	DUF3944 domain-containing protein	NA	NA	NA	NA
WP_082259179.1\|1218491_1219700_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.1e-49	47.6
WP_164689526.1\|1219706_1219925_+	hypothetical protein	NA	NA	NA	NA
WP_082259179.1\|1219884_1221093_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.1e-49	47.6
1219679:1220993	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1283743 : 1293506

Ostreococcus_lucimarinus_virus(12.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160405287.1\|1283743_1285006_-	inorganic phosphate transporter	E5ES24	Ostreococcus_lucimarinus_virus	2.0e-59	35.5
WP_021113653.1\|1285025_1285706_-	TIGR00153 family protein	NA	NA	NA	NA
WP_160405289.1\|1286015_1286999_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	9.3e-33	38.5
WP_164689537.1\|1287154_1289542_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	8.1e-06	29.9
WP_016527802.1\|1289558_1289855_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.1e-12	40.0
WP_164689540.1\|1289906_1290419_+	endopeptidase	A0A0K2SUC1	Clostridium_phage	7.0e-16	39.1
WP_164689543.1\|1290606_1291260_+	uridine kinase	A0A1V0SAA3	Catovirus	1.1e-34	37.0
WP_005710639.1\|1291276_1291861_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	2.2e-29	40.5
WP_160405291.1\|1291991_1293506_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.1e-80	39.2

DBSCAN-SWA_7

1318320 : 1369115

Salmonella_phage(21.43%)

transposase,integrase,tRNA

attL 1313615:1313638|attR 1379363:1379386

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1313615:1313638	attL	NA	NA	NA	NA
WP_021109689.1\|1318320_1319628_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_035524726.1\|1319768_1321283_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_082259339.1\|1321295_1322723_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	A0A1B1IUK5	uncultured_Mediterranean_phage	5.8e-36	28.7
WP_016527772.1\|1322790_1323729_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_005710717.1\|1323827_1324688_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_021111654.1\|1325492_1326767_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_062924372.1\|1326790_1327048_-	BolA family transcriptional regulator	NA	NA	NA	NA
WP_021111652.1\|1327050_1327389_-	STAS domain-containing protein	NA	NA	NA	NA
WP_021112490.1\|1327396_1328032_-	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_005710726.1\|1328068_1328578_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_164689545.1\|1328650_1329427_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_035524717.1\|1329423_1330224_-	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	2.7e-22	31.2
WP_021112497.1\|1330418_1331009_-	divisome-associated lipoprotein YraP	NA	NA	NA	NA
WP_021111648.1\|1331029_1331620_-	SIS domain-containing protein	NA	NA	NA	NA
WP_035496084.1\|1331621_1331978_-	YraN family protein	NA	NA	NA	NA
WP_021116519.1\|1331967_1333707_-	penicillin-binding protein activator LpoA	NA	NA	NA	NA
WP_010786683.1\|1333797_1334658_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.2e-49	42.6
WP_010786684.1\|1334835_1335321_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	1.6e-17	32.4
WP_010786685.1\|1335516_1336356_-	DUF72 domain-containing protein	NA	NA	NA	NA
WP_160405386.1\|1336451_1337513_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_164689547.1\|1337774_1344314_+	hypothetical protein	NA	NA	NA	NA
WP_075630430.1\|1345395_1346070_-	hypothetical protein	NA	NA	NA	NA
WP_005710756.1\|1346204_1346387_-	hypothetical protein	NA	NA	NA	NA
WP_021111644.1\|1346617_1347985_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.1e-111	46.9
WP_160405569.1\|1348132_1349080_+	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	1.6e-26	33.0
WP_021112519.1\|1349104_1349647_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	3.9e-49	55.9
WP_160405570.1\|1349731_1350913_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_043896519.1\|1350905_1351574_+	membrane protein	NA	NA	NA	NA
WP_160405572.1\|1351750_1352863_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_042905716.1\|1353443_1354232_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_021112557.1\|1354337_1356263_-	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_021112548.1\|1357033_1357933_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_042905715.1\|1358094_1358529_+	hypothetical protein	NA	NA	NA	NA
WP_052157455.1\|1358518_1358830_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_164689669.1\|1359161_1360136_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.2e-52	39.1
WP_160405628.1\|1360471_1361392_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_080513256.1\|1361983_1362958_-\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	1.8e-52	39.1
WP_160416790.1\|1362848_1363190_-\|transposase	transposase	NA	NA	NA	NA
WP_011270145.1\|1363262_1364114_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_005826108.1\|1364100_1364904_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_063115545.1\|1364903_1365740_+	APH(6)-I family aminoglycoside O-phosphotransferase	NA	NA	NA	NA
WP_075606313.1\|1365711_1365939_-	hypothetical protein	A0A1B0VFY5	Salmonella_phage	8.7e-11	88.2
WP_000018321.1\|1366075_1366891_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.8e-160	98.2
WP_164689671.1\|1367102_1368077_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	6.8e-52	39.1
WP_005618523.1\|1368197_1369115_-	cephalosporin-hydrolyzing class A beta-lactamase ROB-1	A0A1B0VBP7	Salmonella_phage	4.4e-45	42.3
1379363:1379386	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1683392 : 1691780

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042905784.1\|1683392_1684712_-	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	2.6e-30	34.8
WP_160405144.1\|1684894_1686769_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_021112697.1\|1687001_1687163_-	hypothetical protein	NA	NA	NA	NA
WP_160405143.1\|1687237_1688350_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	6.5e-51	38.6
WP_035524086.1\|1688390_1689035_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-42	44.2
WP_005712143.1\|1689123_1690323_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.6e-98	48.7
WP_042905789.1\|1690415_1690877_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.3e-42	58.8
WP_005712148.1\|1690988_1691780_-	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	1.4e-10	28.0

DBSCAN-SWA_9

1696209 : 1732995

Mannheimia_phage(70.27%)

tail,integrase,terminase,holin

attL 1694851:1694865|attR 1703053:1703067

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1694851:1694865	attL	NA	NA	NA	NA
WP_160405141.1\|1696209_1697265_-\|integrase	tyrosine-type recombinase/integrase	A0A077KGX2	Edwardsiella_phage	1.6e-59	37.0
WP_078208700.1\|1697168_1697474_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_160405139.1\|1697496_1697643_-	hypothetical protein	NA	NA	NA	NA
WP_021118920.1\|1697736_1697982_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_035524071.1\|1698011_1698284_-	hypothetical protein	NA	NA	NA	NA
WP_160405138.1\|1698280_1698544_-	hypothetical protein	NA	NA	NA	NA
WP_160405136.1\|1698497_1699157_-	N-6 DNA methylase	NA	NA	NA	NA
WP_160405134.1\|1699158_1699941_-	riboflavin synthase subunit alpha	NA	NA	NA	NA
WP_160405132.1\|1699977_1700406_-	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	5.8e-40	48.3
WP_160405130.1\|1700749_1700938_+	ribbon-helix-helix protein, CopG family	Q19US2	Mannheimia_phage	7.4e-08	50.0
WP_160405331.1\|1702262_1702781_-	hypothetical protein	NA	NA	NA	NA
WP_160405329.1\|1702789_1703092_-	hypothetical protein	NA	NA	NA	NA
1703053:1703067	attR	NA	NA	NA	NA
WP_160405327.1\|1703140_1703599_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.9e-36	51.4
WP_160405336.1\|1703598_1704258_-	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	5.3e-101	81.3
WP_012621817.1\|1705572_1705791_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	5.2e-21	77.8
WP_035525034.1\|1705920_1706196_+	hypothetical protein	NA	NA	NA	NA
WP_157834276.1\|1706176_1706344_-	hypothetical protein	NA	NA	NA	NA
WP_160405325.1\|1706399_1707317_-	recombinase	A0A0M3LNU3	Mannheimia_phage	1.2e-148	86.6
WP_160405323.1\|1707313_1707520_-	hypothetical protein	NA	NA	NA	NA
WP_160405321.1\|1707506_1708013_-	hypothetical protein	A0A0M3LSK4	Mannheimia_phage	5.3e-24	44.5
WP_160405320.1\|1708057_1708330_-	hypothetical protein	NA	NA	NA	NA
WP_021118904.1\|1708385_1709027_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_043896440.1\|1709333_1709534_+	hypothetical protein	NA	NA	NA	NA
WP_035491943.1\|1709475_1709739_-	hypothetical protein	NA	NA	NA	NA
WP_021112693.1\|1709928_1710075_+	hypothetical protein	NA	NA	NA	NA
WP_021118453.1\|1710463_1711201_-	phosphatase	I6PCV8	Cronobacter_phage	4.6e-53	43.9
WP_160405316.1\|1711197_1712055_-	protein kinase	A0A1V0SBL0	Catovirus	3.9e-11	27.6
WP_005714960.1\|1712032_1712686_-	helix-turn-helix domain-containing protein	A0A0M3LSL8	Mannheimia_phage	4.8e-70	69.0
WP_012621794.1\|1712821_1713028_+	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	2.8e-08	45.3
WP_160405314.1\|1713048_1713294_+	hypothetical protein	A0A0M3LTF5	Mannheimia_phage	7.4e-16	62.5
WP_021118456.1\|1713384_1714038_+	phage antirepressor KilAC domain protein	A0A2I7RHG4	Vibrio_phage	1.0e-51	51.2
WP_075593099.1\|1714034_1714820_+	hypothetical protein	A0A0M3LS90	Mannheimia_phage	2.7e-27	71.3
WP_160405312.1\|1714819_1715491_+\|holin	holin	A0A0M3LS65	Mannheimia_phage	9.5e-29	38.9
WP_071610285.1\|1715513_1715711_+	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.0e-28	80.0
WP_164689675.1\|1715746_1716175_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	3.6e-42	59.7
WP_021110735.1\|1716208_1716616_-	HicB family protein	Q775F5	Haemophilus_virus	1.2e-37	54.1
WP_005714427.1\|1716654_1716837_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_021110734.1\|1716927_1717218_+	DUF1364 domain-containing protein	A0A0M3LQ97	Mannheimia_phage	1.7e-43	89.1
WP_160405310.1\|1717214_1717619_+	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	6.7e-22	43.5
WP_160405308.1\|1717615_1717993_+	antitermination protein	Q7Y5V5	Haemophilus_phage	5.7e-07	27.9
WP_012621837.1\|1718001_1718220_-	hypothetical protein	NA	NA	NA	NA
WP_005714781.1\|1718516_1718693_+	hypothetical protein	NA	NA	NA	NA
WP_021109607.1\|1718884_1719064_+	hypothetical protein	NA	NA	NA	NA
WP_005714705.1\|1719056_1719521_-	hypothetical protein	NA	NA	NA	NA
WP_160405335.1\|1719636_1719900_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	1.7e-18	70.6
WP_160405306.1\|1719874_1720420_+	glycoside hydrolase family protein	A0A0M3LPQ1	Mannheimia_phage	1.2e-42	48.7
WP_160421850.1\|1720392_1720737_+	DUF2570 family protein	A0A0M3LSP1	Mannheimia_phage	4.9e-05	58.0
WP_021110724.1\|1720765_1720915_+	hypothetical protein	A0A0M3LSZ0	Mannheimia_phage	6.9e-17	83.0
WP_164681526.1\|1721139_1721286_+	hypothetical protein	A0A0M3LPX2	Mannheimia_phage	4.1e-14	89.6
WP_160421849.1\|1721301_1721817_+\|terminase	terminase small subunit	A0A0M3LPC3	Mannheimia_phage	1.0e-59	75.1
WP_160421848.1\|1721800_1723036_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	5.3e-195	80.2
WP_160421847.1\|1723045_1724443_+	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	2.7e-163	64.8
WP_164689569.1\|1725994_1729648_+	tape measure protein	A0A0M3LS69	Mannheimia_phage	5.9e-133	35.1
WP_160421846.1\|1729657_1730395_+\|tail	phage minor tail protein L	A0A0M3LSQ5	Mannheimia_phage	6.0e-69	54.5
WP_021113608.1\|1730391_1730805_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PH90	Moraxella_phage	7.1e-35	53.7
WP_021113607.1\|1730851_1731028_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	8.5e-14	63.2
WP_160405333.1\|1731113_1731875_+\|tail	phage tail protein	A0A0M3LP75	Mannheimia_phage	3.2e-65	48.8
WP_164689572.1\|1731904_1732417_+\|tail	tail assembly protein	A0A0M3LPS1	Mannheimia_phage	8.0e-36	50.9
WP_021112309.1\|1732470_1732995_+	hypothetical protein	Q9FZU3	Neisseria_meningitidis_phage	1.6e-20	45.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049090

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection