Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047022 Staphylococcus aureus strain M2024 plasmid pl1_M2024, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP047021 Staphylococcus aureus strain M2024 chromosome, complete genome 5 crisprs cas3,DEDDh,DinG,csa3,WYL 1 5 7 0

Results visualization

1. NZ_CP047021
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047021_1 263919-264009 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047021_2 828787-829772 Orphan NA
11 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047021_3 1921523-1921605 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047021_4 1928654-1928796 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047021_5 2208401-2208486 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 2511286-2511310 0 1.0
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 159791-159815 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 159849-159873 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 358932-358956 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 1319435-1319459 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 1711686-1711710 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 1711743-1711767 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 797109-797133 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 802546-802570 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 1036537-1036561 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 1412015-1412039 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 1964221-1964245 1 0.96
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 809637-809661 2 0.92
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 809755-809779 2 0.92
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 914049-914073 2 0.92
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 1323869-1323893 2 0.92
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 1370339-1370363 2 0.92
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 NZ_CP047021.1 1624003-1624027 2 0.92

1. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 2511286-2511310, mismatch: 0, identity: 1.0

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctttgttg	Protospacer
*************************

2. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 159791-159815, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

3. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 159849-159873, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

4. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 358932-358956, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaatttctctttgttg	Protospacer
************ ************

5. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 1319435-1319459, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

6. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 1711686-1711710, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

7. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 1711743-1711767, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

8. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 797109-797133, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

9. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 802546-802570, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

10. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 1036537-1036561, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctatgttg	Protospacer
******************* *****

11. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 1412015-1412039, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

12. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 1964221-1964245, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

13. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 809637-809661, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcatttcgaaattctctgtgttg	Protospacer
**** ************** *****

14. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 809755-809779, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcatttcgaaattctctatgttg	Protospacer
**** ************** *****

15. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 914049-914073, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttagaaattctctgtgttg	Protospacer
******** ********** *****

16. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 1323869-1323893, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttatcgaaattctctgtgttg	Protospacer
****** ************ *****

17. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 1370339-1370363, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaaatctctgtgttg	Protospacer
************* ***** *****

18. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to position: 1624003-1624027, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctatgttg	Protospacer
******* *********** *****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047021_1 1.1|263952|25|NZ_CP047021|CRISPRCasFinder 263952-263976 25 LC371242 Escherichia phage EcS1 DNA, complete sequence 15447-15471 2 0.92
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 CP052500 Klebsiella pneumoniae strain B17KP0021 plasmid unnamed 2650-2677 2 0.929
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 152971-152998 3 0.893
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 152953-152980 4 0.857
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 153631-153658 4 0.857
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 CP052500 Klebsiella pneumoniae strain B17KP0021 plasmid unnamed 3202-3229 5 0.821
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 NZ_CP035292 Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence 16787-16814 6 0.786
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 NZ_CP035292 Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence 17621-17648 6 0.786
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 NZ_CP035292 Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence 17783-17810 6 0.786
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 NZ_CP035292 Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence 18869-18896 6 0.786
NZ_CP047021_2 2.9|829599|28|NZ_CP047021|CRT 829599-829626 28 NZ_CP035292 Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence 19265-19292 6 0.786
NZ_CP047021_2 2.11|829719|34|NZ_CP047021|CRT 829719-829752 34 CP052500 Klebsiella pneumoniae strain B17KP0021 plasmid unnamed 3196-3229 7 0.794
NZ_CP047021_2 2.11|829719|34|NZ_CP047021|CRT 829719-829752 34 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 152947-152980 8 0.765
NZ_CP047021_5 5.1|2208427|34|NZ_CP047021|CRISPRCasFinder 2208427-2208460 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP047021_5 5.1|2208427|34|NZ_CP047021|CRISPRCasFinder 2208427-2208460 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765
NZ_CP047021_2 2.8|829533|46|NZ_CP047021|CRT 829533-829578 46 NZ_LT009691 Staphylococcus aureus strain NZAK3 plasmid 2 9997-10042 12 0.739

1. spacer 1.1|263952|25|NZ_CP047021|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctttttgttg	Protospacer
******* *********.*******

2. spacer 2.9|829599|28|NZ_CP047021|CRT matches to CP052500 (Klebsiella pneumoniae strain B17KP0021 plasmid unnamed) position: , mismatch: 2, identity: 0.929

ttccgatagcgattcagattccgacagt	CRISPR spacer
ttccgacagcgattcggattccgacagt	Protospacer
******.********.************

3. spacer 2.9|829599|28|NZ_CP047021|CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 3, identity: 0.893

ttccgatagcgattcagattccgacagt	CRISPR spacer
ctccgatagcgattcagattccgatagc	Protospacer
.***********************.**.

4. spacer 2.9|829599|28|NZ_CP047021|CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.857

ttccgatagcgattcagattccgacagt	CRISPR spacer
ttccgatagcgattcagattccgaaccg	Protospacer
************************    

5. spacer 2.9|829599|28|NZ_CP047021|CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.857

ttccgatagcgattcagattccgacagt	CRISPR spacer
ctccgacagcgattcggattccgacagc	Protospacer
.*****.********.***********.

6. spacer 2.9|829599|28|NZ_CP047021|CRT matches to CP052500 (Klebsiella pneumoniae strain B17KP0021 plasmid unnamed) position: , mismatch: 5, identity: 0.821

ttccgatagcgattcagattccgacagt	CRISPR spacer
cagcgacagcgattcggattccgacagt	Protospacer
.  ***.********.************

7. spacer 2.9|829599|28|NZ_CP047021|CRT matches to NZ_CP035292 (Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ttccgatagcgattcagattccgacagt	CRISPR spacer
cagcgatagcgattcagactctgacagc	Protospacer
.  ***************.**.*****.

8. spacer 2.9|829599|28|NZ_CP047021|CRT matches to NZ_CP035292 (Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ttccgatagcgattcagattccgacagt	CRISPR spacer
cagcgatagcgattcagactctgacagc	Protospacer
.  ***************.**.*****.

9. spacer 2.9|829599|28|NZ_CP047021|CRT matches to NZ_CP035292 (Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ttccgatagcgattcagattccgacagt	CRISPR spacer
cagcgatagcgattcagactctgacagc	Protospacer
.  ***************.**.*****.

10. spacer 2.9|829599|28|NZ_CP047021|CRT matches to NZ_CP035292 (Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ttccgatagcgattcagattccgacagt	CRISPR spacer
cagcgatagcgattcagactctgacagc	Protospacer
.  ***************.**.*****.

11. spacer 2.9|829599|28|NZ_CP047021|CRT matches to NZ_CP035292 (Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ttccgatagcgattcagattccgacagt	CRISPR spacer
cagcgatagcgattcagactctgacagc	Protospacer
.  ***************.**.*****.

12. spacer 2.11|829719|34|NZ_CP047021|CRT matches to CP052500 (Klebsiella pneumoniae strain B17KP0021 plasmid unnamed) position: , mismatch: 7, identity: 0.794

ttcagatagcgattcagattccgacagtgactca	CRISPR spacer
cagcgacagcgattcggattccgacagtgactcc	Protospacer
.   **.********.***************** 

13. spacer 2.11|829719|34|NZ_CP047021|CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.765

ttcagatagcgattcagattccgacagtgactca	CRISPR spacer
ttccgatagcgattcagattccgaaccgcaggca	Protospacer
*** ********************     *  **

14. spacer 5.1|2208427|34|NZ_CP047021|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

15. spacer 5.1|2208427|34|NZ_CP047021|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

16. spacer 2.8|829533|46|NZ_CP047021|CRT matches to NZ_LT009691 (Staphylococcus aureus strain NZAK3 plasmid 2) position: , mismatch: 12, identity: 0.739

tagcgattctgactcagatagcgattcagactcagacagtgactca	CRISPR spacer
cgaagaagatacatcagatagcgactcagactcagacagcgactca	Protospacer
... **   *.  ***********.**************.******

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 734044 : 741864 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 753836 : 768567 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 1011459 : 1019932 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1561399 : 1569711 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_5 1639209 : 1648252 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 1773945 : 1895442 135 Staphylococcus_phage(94.17%) capsid,protease,transposase,tail,plate,integrase,head,portal,tRNA,holin,terminase attL 1852956:1852974|attR 1895501:1895519
DBSCAN-SWA_7 1975650 : 2073585 116 Staphylococcus_phage(83.54%) capsid,protease,tail,integrase,head,portal,tRNA,holin,terminase attL 1973648:1973672|attR 2062441:2062465
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage