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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047584 Lactobacillus fermentum strain AGR1485 chromosome, complete genome 1 crisprs cas14j,cas3,DEDDh,csa3,WYL,DinG 0 2 20 0

Results visualization

1. NZ_CP047584
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047584_1 1719019-1719491 Orphan NA
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047584_1 1.3|1719177|31|NZ_CP047584|CRISPRCasFinder 1719177-1719207 31 NZ_CP021878 Enterococcus wangshanyuanii strain MN05 plasmid unnamed5 5048-5078 8 0.742
NZ_CP047584_1 1.3|1719177|31|NZ_CP047584|CRISPRCasFinder 1719177-1719207 31 NZ_CP021878 Enterococcus wangshanyuanii strain MN05 plasmid unnamed5 55561-55591 8 0.742
NZ_CP047584_1 1.3|1719177|31|NZ_CP047584|CRISPRCasFinder 1719177-1719207 31 NC_019730 Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence 240578-240608 9 0.71
NZ_CP047584_1 1.5|1719303|31|NZ_CP047584|CRISPRCasFinder 1719303-1719333 31 NZ_CP004882 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMBLin15, complete sequence 13746-13776 10 0.677
NZ_CP047584_1 1.5|1719303|31|NZ_CP047584|CRISPRCasFinder 1719303-1719333 31 NZ_CP011355 Bacillus thuringiensis strain YC-10 plasmid pYC10, complete sequence 10642-10672 10 0.677
NZ_CP047584_1 1.5|1719303|31|NZ_CP047584|CRISPRCasFinder 1719303-1719333 31 NC_006945 Bacillus phage GIL16c, complete genome 13737-13767 10 0.677
NZ_CP047584_1 1.5|1719303|31|NZ_CP047584|CRISPRCasFinder 1719303-1719333 31 AY701338 Bacillus thuringiensis phage GIL16c, complete genome 13737-13767 10 0.677

1. spacer 1.3|1719177|31|NZ_CP047584|CRISPRCasFinder matches to NZ_CP021878 (Enterococcus wangshanyuanii strain MN05 plasmid unnamed5) position: , mismatch: 8, identity: 0.742

gttgctgtagaattggttggtgtaccgggcc	CRISPR spacer
gttgctgtagaattgattggtgtcgtccgtg	Protospacer
***************.*******  .  *. 

2. spacer 1.3|1719177|31|NZ_CP047584|CRISPRCasFinder matches to NZ_CP021878 (Enterococcus wangshanyuanii strain MN05 plasmid unnamed5) position: , mismatch: 8, identity: 0.742

gttgctgtagaattggttggtgtaccgggcc	CRISPR spacer
gttgctgtagaattgattggtgtcgtccgtg	Protospacer
***************.*******  .  *. 

3. spacer 1.3|1719177|31|NZ_CP047584|CRISPRCasFinder matches to NC_019730 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence) position: , mismatch: 9, identity: 0.71

gttgctgtagaattggttggtgtaccgggcc	CRISPR spacer
cctactgtataattggttggagtaccgaaat	Protospacer
 .*.***** ********** ******.. .

4. spacer 1.5|1719303|31|NZ_CP047584|CRISPRCasFinder matches to NZ_CP004882 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMBLin15, complete sequence) position: , mismatch: 10, identity: 0.677

attgctgtagaactggttcgtataacgaacg	CRISPR spacer
tagcctgtataactgtttcgtataacggggc	Protospacer
    ***** ***** ***********..  

5. spacer 1.5|1719303|31|NZ_CP047584|CRISPRCasFinder matches to NZ_CP011355 (Bacillus thuringiensis strain YC-10 plasmid pYC10, complete sequence) position: , mismatch: 10, identity: 0.677

attgctgtagaactggttcgtataacgaacg	CRISPR spacer
tagcctgtataactgtttcgtataacggggc	Protospacer
    ***** ***** ***********..  

6. spacer 1.5|1719303|31|NZ_CP047584|CRISPRCasFinder matches to NC_006945 (Bacillus phage GIL16c, complete genome) position: , mismatch: 10, identity: 0.677

attgctgtagaactggttcgtataacgaacg	CRISPR spacer
tagcctgtataactgtttcgtataacggggc	Protospacer
    ***** ***** ***********..  

7. spacer 1.5|1719303|31|NZ_CP047584|CRISPRCasFinder matches to AY701338 (Bacillus thuringiensis phage GIL16c, complete genome) position: , mismatch: 10, identity: 0.677

attgctgtagaactggttcgtataacgaacg	CRISPR spacer
tagcctgtataactgtttcgtataacggggc	Protospacer
    ***** ***** ***********..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 14359 : 24534 9 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_2 37852 : 150524 91 Paenibacillus_phage(19.44%) protease,transposase,tRNA NA
DBSCAN-SWA_3 173352 : 234214 53 Streptococcus_phage(38.89%) transposase NA
DBSCAN-SWA_4 237664 : 310346 58 Lactobacillus_phage(15.0%) protease,transposase,tRNA NA
DBSCAN-SWA_5 316061 : 357729 33 Bacillus_virus(20.0%) transposase,tRNA NA
DBSCAN-SWA_6 445503 : 512883 60 Streptococcus_phage(26.09%) transposase,tRNA NA
DBSCAN-SWA_7 679671 : 799852 114 unidentified_phage(15.15%) protease,transposase,integrase,tRNA attL 739293:739352|attR 777291:777497
DBSCAN-SWA_8 805129 : 871215 55 Paenibacillus_phage(14.29%) protease,transposase,tRNA NA
DBSCAN-SWA_9 878771 : 945756 55 Staphylococcus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_10 966471 : 1022513 57 Paenibacillus_phage(13.33%) transposase,integrase,tRNA attL 992597:992612|attR 1009196:1009211
DBSCAN-SWA_11 1026374 : 1085751 56 Streptococcus_phage(27.78%) transposase,integrase attL 1054540:1054555|attR 1067629:1067644
DBSCAN-SWA_12 1184545 : 1204712 16 Paenibacillus_phage(37.5%) transposase NA
DBSCAN-SWA_13 1225806 : 1253417 30 Lactobacillus_phage(28.57%) transposase NA
DBSCAN-SWA_14 1313699 : 1473442 156 Lactobacillus_phage(50.85%) plate,portal,tail,protease,head,integrase,tRNA,capsid,transposase,terminase attL 1361889:1361906|attR 1408927:1408944
DBSCAN-SWA_15 1488328 : 1590914 110 Lactobacillus_phage(57.89%) protease,tail,portal,tRNA,head,integrase,capsid,transposase,terminase attL 1530440:1530458|attR 1566811:1566829
DBSCAN-SWA_16 1632291 : 1700350 58 Streptococcus_phage(22.22%) protease,transposase,tRNA NA
DBSCAN-SWA_17 1720534 : 1806374 81 Paenibacillus_phage(26.09%) protease,transposase,tRNA NA
DBSCAN-SWA_18 1838046 : 1894094 50 Lactobacillus_phage(21.43%) protease,transposase NA
DBSCAN-SWA_19 1917072 : 1956609 34 Lactobacillus_virus(18.18%) transposase NA
DBSCAN-SWA_20 2081355 : 2203074 105 Paenibacillus_phage(21.21%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage