CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048797	Providencia vermicola strain P8538 plasmid p8538-NDM-1, complete sequence	0 crisprs	DEDDh	0	0	1	0
NZ_CP048796	Providencia vermicola strain P8538 chromosome, complete genome	5 crisprs	WYL,DEDDh,csa3,RT,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	0	15	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

93793 : 125907

Salmonella_phage(33.33%)

transposase,integrase

attL 117452:117465|attR 126353:126366

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000427620.1\|93793_94798_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_001138073.1\|94876_97849_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_001162012.1\|97851_98409_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_000845048.1\|98714_99728_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_032488579.1\|99958_100513_+	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA
WP_000679427.1\|100681_101029_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|101022_101862_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376617.1\|101988_102231_+	hypothetical protein	NA	NA	NA	NA
WP_001183923.1\|102314_102614_-	DUF2293 domain-containing protein	NA	NA	NA	NA
WP_004201046.1\|104124_104778_+	endonuclease III	NA	NA	NA	NA
WP_000855769.1\|104875_105721_-	RmtC family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
WP_004201164.1\|106925_107738_+	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
WP_004201167.1\|107741_108107_+	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
WP_004201168.1\|108111_108750_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_004201169.1\|108760_109792_-	twin-arginine translocation (TAT) pathway signal sequence domain protein	NA	NA	NA	NA
WP_004201171.1\|109796_110126_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_004201172.1\|110319_110610_+	co-chaperone GroES	A0A221S322	uncultured_virus	2.1e-17	47.8
WP_004201176.1\|110665_112306_+	chaperonin GroEL	A0A219YK78	uncultured_virus	8.2e-175	62.1
WP_001326394.1\|115538_115979_+	hypothetical protein	NA	NA	NA	NA
WP_000791469.1\|116149_116602_+	hypothetical protein	NA	NA	NA	NA
WP_000278322.1\|116617_117220_-	hypothetical protein	NA	NA	NA	NA
117452:117465	attL	NA	NA	NA	NA
WP_000575657.1\|117489_117771_+	hypothetical protein	NA	NA	NA	NA
WP_000949433.1\|118069_118606_+	hypothetical protein	NA	NA	NA	NA
WP_000543934.1\|118608_119619_+\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
WP_004201184.1\|119623_120493_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.5e-23	35.1
WP_000139717.1\|120489_120981_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|121388_122093_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000156884.1\|124884_125907_-\|transposase	IS110-like element IS5708 family transposase	NA	NA	NA	NA
126353:126366	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP048796

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048796_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048796_1

2741496-2741763

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR

4 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP048796_1

>merge|NZ_CP048796|1|2741496-2741763|CRISPRCasFinder,CRT,PILER-CR
CCAACAAGCTGCCTATACGGCAGTGAACACACTATTGTTTTCCCTTGGCGTAAACATTCATTTCTAAGCTGCCTATATGGCAGTGAACTAAACAAGTATTACTTGAGCATCGTAGTGATATTTCTAAGCTGCCTATACGGCAGTGAACTTAATTATTGTCAGTGGTCTTATATATTGTGTTTTCTAAGCTGCCTATACGGCAGTGAACGATAGATCAGAGCGTCATGAGCGAGTCTGCGTTTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP048796|1|1|2741496-2741763|CRISPRCasFinder
CCAACAAGCTGCCTATACGGCAGTGAAC	ACACTATTGTTTTCCCTTGGCGTAAACATTCA
TTTCTAAGCTGCCTATATGGCAGTGAAC	TAAACAAGTATTACTTGAGCATCGTAGTGATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTAATTATTGTCAGTGGTCTTATATATTGTGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATAGATCAGAGCGTCATGAGCGAGTCTGCGT
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP048796|1|1|2741496-2741763|CRT
CCAACAAGCTGCCTATACGGCAGTGAAC	ACACTATTGTTTTCCCTTGGCGTAAACATTCA
TTTCTAAGCTGCCTATATGGCAGTGAAC	TAAACAAGTATTACTTGAGCATCGTAGTGATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTAATTATTGTCAGTGGTCTTATATATTGTGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATAGATCAGAGCGTCATGAGCGAGTCTGCGT
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP048796|1|1|2741556-2741763|PILER-CR
TTTCTAAGCTGCCTATATGGCAGTGAAC	TAAACAAGTATTACTTGAGCATCGTAGTGATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTAATTATTGTCAGTGGTCTTATATATTGTGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATAGATCAGAGCGTCATGAGCGAGTCTGCGT
TTTCTAAGCTGCCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048796.1\|WP_167520921.1\|2753269_2753440_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_154622958.1\|2751992_2752988_+\|chitinase	unknown	unknown	gnl\|CDD\|226000
NZ_CP048796.1\|WP_154621785.1\|2737825_2738257_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_163863606.1\|2731428_2732259_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP048796.1\|WP_163862118.1\|2749522_2750500_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP048796.1\|WP_163862105.1\|2742543_2743569_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP048796.1\|WP_154621784.1\|2738582_2738948_+\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
NZ_CP048796.1\|WP_154621916.1\|2735432_2737076_+\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|180820
NZ_CP048796.1\|WP_154623419.1\|2741893_2742535_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP048796.1\|WP_154621914.1\|2732281_2733076_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180818
NZ_CP048796.1\|WP_154622959.1\|2754384_2754753_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_154621915.1\|2733894_2735364_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143432
NZ_CP048796.1\|WP_163862121.1\|2755984_2756698_-\|carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|239398
NZ_CP048796.1\|WP_154621913.1\|2730897_2731413_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380354
NZ_CP048796.1\|WP_163862109.1\|2743571_2744519_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP048796.1\|WP_154622575.1\|2739994_2740777_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP048796.1\|WP_163862116.1\|2745998_2749526_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP048796.1\|WP_154622574.1\|2739202_2739676_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_154621918.1\|2733086_2733881_+\|aspartate-dehydrogenase	unknown	unknown	gnl\|CDD\|237342
NZ_CP048796.1\|WP_163862113.1\|2744515_2745787_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220

Protein	Function_ID	Function_description	E-value
NZ_CP048796.1\|WP_154622958.1\|2751992_2752988_+\|chitinase	gnl\|CDD\|226000	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism].	1.50735e-160
NZ_CP048796.1\|WP_154621784.1\|2738582_2738948_+\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	9.41496e-22
NZ_CP048796.1\|WP_163863606.1\|2731428_2732259_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.39358e-28
NZ_CP048796.1\|WP_163862118.1\|2749522_2750500_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	6.53629e-174
NZ_CP048796.1\|WP_163862105.1\|2742543_2743569_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP048796.1\|WP_154621918.1\|2733086_2733881_+\|aspartate-dehydrogenase	gnl\|CDD\|237342	PRK13303, PRK13303, aspartate dehydrogenase.	4.00486e-110
NZ_CP048796.1\|WP_154621916.1\|2735432_2737076_+\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|180820	PRK07064, PRK07064, thiamine pyrophosphate-binding protein.	0
NZ_CP048796.1\|WP_163862109.1\|2743571_2744519_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.3367e-139
NZ_CP048796.1\|WP_154621914.1\|2732281_2733076_+\|SDR-family-oxidoreductase	gnl\|CDD\|180818	PRK07062, PRK07062, SDR family oxidoreductase.	2.42225e-161
NZ_CP048796.1\|WP_163862121.1\|2755984_2756698_-\|carbonic-anhydrase-family-protein	gnl\|CDD\|239398	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carbon dioxide or carbonic acid, or in sensing carbon dioxide levels in the environment. Dioscorin is the major storage protein of yam tubers and may play a role as an antioxidant. Tobacco Nectarin may play a role in the maintenace of pH and oxidative balance in nectar. Mollusc nacrein may participate in calcium carbonate crystal formation of the nacreous layer. This subfamily also includes three alpha carbonic anhydrases from Chlamydomonas reinhardtii (CAH 1-3). CAHs1-2 are localized in the periplasmic space. CAH1 faciliates the movement of carbon dioxide across the plasma membrane when the medium is alkaline. CAH3 is localized to the thylakoid lumen and provides CO2 to Rubisco.	5.24958e-105
NZ_CP048796.1\|WP_154621915.1\|2733894_2735364_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143432	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.	0
NZ_CP048796.1\|WP_154621913.1\|2730897_2731413_+\|cupin-domain-containing-protein	gnl\|CDD\|380354	cd02225, cupin_PA3510-like, Pseudomonas aeruginosa PA3510 and related proteins, cupin domain. This family includes bacterial proteins homologous to PA3510, a Pseudomonas aeruginosa protein of unknown function with a beta-barrel fold that belongs to the cupin superfamily.	9.17964e-74
NZ_CP048796.1\|WP_154623419.1\|2741893_2742535_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.11279e-48
NZ_CP048796.1\|WP_163862116.1\|2745998_2749526_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP048796.1\|WP_154622575.1\|2739994_2740777_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	3.96479e-08
NZ_CP048796.1\|WP_163862113.1\|2744515_2745787_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	4.18951e-126

>NZ_CP048796.1|WP_154622575.1|2739994_2740777_-|elongation-factor-Tu
MKAFVVFLGGLLFSSLAFSSVNSVMLLGDDYRYNLVNAFPNKKFVAPKVSNSLIQDVKQAFSQESIILVVNMADGPTQKLRESILVARQSGHNSVQIYFHGKHLPKEMLDDEDFQQLMSLAIEEVNELLNLYDMQVTAVYHDWLDDSFEKFLSQKNTVERVLPEKAILMNQIYSHAYIFSKEEAASNDAIMDGTVIEFACQDVISSGTVRVQEPIQRGETYSNIILQLENPTLIPIYARCLGTLNNKLSMAFITISKNDI
>NZ_CP048796.1|WP_154622574.1|2739202_2739676_-|hypothetical-protein
MNKMTKLSGLLILATSLSLAPYVSYAEPNGGQGHGQNKEHPKNKGNKSNQGNGKDKRHDASSDKNNTLSVALTYNEARALALDSGITGYNALPPGIAKNFARGKPLPPGIAKKAVPQSMLLQLPHYPGYEWNIVGNDLVLIALSTAIVTTIINDVFD
>NZ_CP048796.1|WP_154621784.1|2738582_2738948_+|DUF305-domain-containing-protein
MKKILPIATLIAASVSLSAFANSGHSMHMSSSTTNEMQKELNQSMDKMHSDMAKSMNEQNADVAFAQGMIAHHLGAIEMAKIELKYGTDPEMKKLAEQIINAQGPEIEQMQKWLEKNKDKK
>NZ_CP048796.1|WP_154621785.1|2737825_2738257_+|hypothetical-protein
MKKYLLPISLFINLVLLIAIIVMATLFFNLKGKIDTTVAQIKNGQYAELIKDNTAKLIPEGLKRIDTIQPGQSQCAYFYQNIDSITEYLTANPTIAGAETYIKQLNNLKKSAEKAPSALKETACEKGVSTINYISEKISTVTD
>NZ_CP048796.1|WP_154621916.1|2735432_2737076_+|thiamine-pyrophosphate-binding-protein
MHETITVGEAIARTLEQYQVSTVYGVISIHNLPIADAIGRRGLIDFTPSRGEAGAVTMADAHSRFTGLGVALTSTGAGAGNAVGSMIEAMNACSPLIHITGQVEKAYLDMDAGFIHETRDQLGFLRASSKQAFRVHSAAQAVAILHKAIQVAQTIPCGPVSIEIPIDIQNTPVPLSILSTPLTTQPLPAATTDQVDAIWQRLQHAQRPLLWIGGGALHASAAVKKLADLGVAVISSTHGRGILSDDHPFSLRAFHNADSIDKLMRTCDITLVAGSRLRSNETKTWSLPLPQPLIQIDIDPQATNRNYSADLVVTADCHSILSALAERLEKANSVISPQWRQQVQEATHLAEQQLREQCGPYSQLSDAVEHALPTQGIFVRDITVSGSLWGSRLLKATQPRHNIHSLAGAIGLGLAMAIGSAKANPQIPVIGLVGDGGLMLGVGELATMAQEQLPIVLIIMNDHGYGVMRGIQEKYFADRQYYNDLLTPSFTRLAESMGIKALTIDKADDFKSTLQLAVDLKQPVVIEVLMENIGKMNFSGPPQKKLF
>NZ_CP048796.1|WP_154621915.1|2733894_2735364_+|aldehyde-dehydrogenase-family-protein
MKKIDIFVGGKWQLGRGHEMHSRFPGDQHIVATLNSASLDDVEEAVLAADNAWRDPAWRYMPAHQRAAILLKVSALIEERAEELVRLQTLDNGKPWAEARGLVMSAAATARYFAAVCEVSGGELPPRRQPDMMTLSTYQPLGVIAAITPWNSPIASDMQKIAPAIAAGNAVILKPAEATPLISLKLAELFEEAGLPSGLLSVLPGKGSVVGDALVRHPLVRKISFTGGTNTGRQLAHIAADKLITTSLELGGKSPTIVLEDADLDLAAHGVCYGIFSSMGQACIAGSRLFVSRAIYQPFLEKLTALTQQLIIGDPRQERVHVGPLISPAHRESVMRYVAQAITEGGSIRLGGTIPQDPHLQEGNYFLPTIIEGLNNQASVCQEEIFGPVLVVIPFDNEAELIEEANDSLYGLAAGIWTKDYTRAFKLADALDVGTVWINTYKVFSISTPFGGFKESGLGREKGLESLKAYMQQKSIFLALNPQPNRWCE
>NZ_CP048796.1|WP_154621918.1|2733086_2733881_+|aspartate-dehydrogenase
MKTLMLIGYGAMANEVISRLPKGIELRWIVAREHHHPDIQQRFQNRVTPLSSPTQAIQQPDLVLECASQQAVKQYAAKILEKGWTLAIISTGALADAQFADTLRHQAHQHQGTLIPLSGAVAGLDGLRCAKEATINQVTYQSRKSPASWRNGPAENYIDLDAVSEPTVFFSGTAREAALKFPANANVAATVALYGIGMDETKVELMVDPITTQNSHRIDVSGDFGHFCIELNGNPLPLNAKTSLLSALSAVEICRRIAEQKAII
>NZ_CP048796.1|WP_154621914.1|2732281_2733076_+|SDR-family-oxidoreductase
MNLQLKNRVAVVTGGSSGIGLATVQLLLEEGCKVAFCGRNQDKLMQTLTMLQADYPQAELLAVCCDVMDKTQTEAFAQQVQSHFGQADLLINNAGQGYVAHYADTPEEAWLHEAQLKLFGVINPVNAFMTLLEQSEIASITCVNSLLALQPEPHMVATSAARAALLNLTLNLSKTLLPKGIRVNSILLGMVESEQWRRRFEQRSDKSLNWESWIGEIAQKRGIPMQRLGKPEEPARALVFLASPMASFTSGAALDVSGGFCHHI
>NZ_CP048796.1|WP_163863606.1|2731428_2732259_+|alpha/beta-fold-hydrolase
MKLPIEQLPTIRSADFGQYHVNWREAGEGETIILLHGISSGSASWIYQLADSSLTQQYRLLAWEAPGYLNSLALTTDTPTANDYAEALVALIDGLAISQVVLVGHSLGAIIASAFAAKYPQRIKGLLLANPAQGYGAKDKTEQKQVYEQRQTIVFNSGIENYAQQRAAALLSPTASEQQIDWVRQTMRKLNPKGFLAAAWMLAYDDINRYLSHYSGPLQMLVGLDDTITPPQKVQAIAQQQGCSLVYIEQAGHASYLDASQPFNHYLKQFLATLPL
>NZ_CP048796.1|WP_154621913.1|2730897_2731413_+|cupin-domain-containing-protein
MSQQAQIKPQDTSMADWVESRIARFEGRKYDWNALKFQADFDPKYRRAQMRYIGTGATGVANDVNTVPAENFTFSTMVLPSKCEGPLHLHPDVEEVFFMLKGTITLFIKDGDEEYETILKERDLISVPAGIYRGLFNHGEEEALMCVMIGTPKPAIPTYPDDHPLSKVKRG
>NZ_CP048796.1|WP_154623419.1|2741893_2742535_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEITLLPDSTIPLDFLWQRVYQQIHIALVENKSETGHSEVAVAFPEYGSVGFRLGKKIRLMANTEAMLAQLNVNHWLARLSDYVHVKSILTVPENAIPVSYVRQHVKGKKRTELDIQKKAQFLSIKSGQPAEVCLHVLRKNQVNEFSRLPFIWMESQQSKSKYEGAIHRPFPLFIRCISAGKAQLGGFNCYGLSQQVGRDVELATVPHF
>NZ_CP048796.1|WP_163862105.1|2742543_2743569_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTSWKNRTECIPLALQEKSVRGTISNRLKGPVKNDPLKLNAEVEKANLQTVDACALGTQQDTLKHQFTLKILGGVETPSACNNALFKESYTKAAKEYIEKESFRELGLRYAHNIANARFLWRNRVGAEKIEVEVKILSEGLEQQWTFDATQYSIRSFDQQDEKVNELGAKIAAALANSEGALLLEITTYTLLGQSQEVYPSEELVLDKGKGSKSKILYHVNGHAAMHSQKIGNALRSIDTWYPDYHDDVNSGGAIAIEPYGAVTNLGRAYRTPGAKQDFYTHFDKWARGEKLARIEDEHYVMAVLVRGGVFGESDK
>NZ_CP048796.1|WP_163862109.1|2743571_2744519_-|type-I-F-CRISPR-associated-protein-Csy2
MSKPMNLLKLPHLKVHNANALSSPFTIGFPAMTAWLGFMHALELKLRKIGFSALEFESIAVISHECNLQTYRGRDDFVNSIIGTGNPLDKEGNRSAFIEEARCHLDVSLVIHFSDADNEQGDVLLDTANVHRVTEILSTMKLAGGDILSAKKPEIYYLPANDRNGSYKRNLLNSLMPGYALVERRDLMVASMEEGQDAMDALLDYVTVNNQCIEIESKNESKDKSFEWKTQRKTNGWIVPIATGYQGISSLGIAKNQRDPNVPHRFAESVVTLGQFVMVNKIGHLNEMLWEYHTDLENNLYLCQQVESQYFTRGE
>NZ_CP048796.1|WP_163862113.1|2744515_2745787_-|type-I-F-CRISPR-associated-protein-Csy1
MLDPAIEAFFEERKEGWLKKTLKASMSEDEVSQIKQKCEEVFALSQWLPNAAKRAGQISLSTHPCTFSHPSARKNKNGSVSAIIANAKAANDGFLRSGNVEVEPDALGNAAALDVYKFLTLQMYDGKTLLAHIEAETSLAKSLLTFEGMPYEQLREGFLAMSAADDSVVTSSKIKQVYFPVWTDEDDYHLLSPLTPSGLLFEMRRRIDDIRFSEQTKELRELKRKREYSEIGFKEIYGITTIGFGGTKPQNISVLNNQNAGKAHLLPSLPPVLNIRETRLPKTNFFTDVINPWHSKETFQAFHGLITLPKEKINSDFAEYRDNRIQEYVDYIIVMMWKIRRILEQEKVVLPVNIAKYQQTWLFPDTEEQRNNMEDWLEILIPEIARQFIAGYKVVNGKKALFLGNDEFNFIKDLVAKNKELLR
>NZ_CP048796.1|WP_163862116.1|2745998_2749526_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKHALKRTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLKQSASRSTAVSCHWIRSRSRSQLLWIVGNRNKFNSQGYVPVNRTEKSFLGREDENDWKYLSLISTFAKLAALFHDWGKASRLFQDKLNPAIKTTFKGDPVRHEWVSTILFSLLVKNQGGESDEQWLETLIKNEWDELQLQQGATENYLLQSPLANLPDAAALLAWLILSHHRLPFLDEQELKNWQDIALNTHNQLLTEIRQNWGYENNDDISQFQRRIKMCFEFPNGLLSHSTVWIRTVQKVANELKNQLPLFRQAMADGSWRVIAHHARLCLMLGDHNYSSKGNDPQWRSEIALYANTHKINHIPQFKQKLDEHLVKVAEIAGDIAETLPYFESESSPVSDIPQLAYDKNSKGKFSWQEDAVNSIYQYRKKRDDEIKGYFIVNMASTGCGKTRANVKIMQALSEDKQSFRFILALGLRTLALQTGDEYKDKNSIGLNEGDIAVLIGSKAVAQLHQQAKENDDNLKAHDQDSSPQLNTNSNNLLPYQTGSESQEMLFDENEEELRWAEDKWQGVLPEELLSTVLTRAKDRALLYAPVLACTIDHIMGATETVRGGRYILPCLRLMSSDLVIDEVDDFTDSGSIAVARLIYMAGLLGRKVMISSATITPDTALAYFHAYQSGWYAYAKSRQQPLEVGCLWVDEGEYDSIKDKCQSSTLAATLVANDDNTPYLYQQYHDKFIKRRVNVLAQQPARRKALIVPTPKDNTQDSQQCYFNHILNAALAQHDQHAFLDKRTGIQVSFGVIRVANILPCVDLTRFLLECACPEGVEIRTMAYHSQQVLLLRHEQEQHLDSVLKRKEQVGEEANALNNPIIRQHLENVSIEGKAQHLLFILVATPVEEVGRDHDFDWAVVEPSSYRSVIQMAGRVRRHREGEVQQPNIALLQYNKKGFEGGIDNPFSRPGYENNHIGLGLSTHNLCDLVDEQQLLKSVDATPRIQQQTNYENKKHRDLACLEHAAIKYTLKTEYIFPPKQVEKPVATKRRSQSKNYHTLPRNAASHIWGYTHGCWWMTAVSQQLASFRSQMPSFRLVLEISPKGTIQFSEYTRESAWISVGPQNGIYYNKFPESIKKRLWLVRDYEQSIQSQGMDGKQATSLSRFYGELTFLKQQNRDVIYHYDDQMGIYPVIR
>NZ_CP048796.1|WP_163862118.1|2749522_2750500_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDLSPSDLKTILHSKRANMYYLEHCRVMQKEGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMATEVEWFTPQSEYRPTEYLQGWMSFWFDEQKRLSAAKTLQCSRINYLQKIWQNSRELKSEGFIYDDTVIQNALKTFQTRTDEANDTQILLLIEAQLTKVLYKYAANNTGQNKFTRQHQAIDKANTFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALIFDIADLIKDAIVLPWAFICAKEGATEQEFRQQILQSFIDNHALDFLFDTVKAIALQAGSQQQIQRSEL
>NZ_CP048796.1|WP_154622958.1|2751992_2752988_+|chitinase
MSSNDITNTSLVDDAATMPDISNKKIMMGFWHNWAAGTSDGYQQGQFTNMDLTDIPVEYNVVAVAFMKGEGIPTFKPYNLTDTEFRRQVGVLNSQGRAVLISLGGADAHIALTSGDEDKLTNEIIRLVEVYGFDGLDIDLEQAAIGAANNKTVLPAALKKVKAHYAAEGKNFIISMAPEFPYLRINGTYLDYITALEGYYDFIAPQYYNQGGDGIWVDQTTAGTGAWLAQNNDAMKEDFLYYLTESLVTGTRGYTKIPASKFVIGLPSNNDAAGSGYVVDKQAVYNAFSRLDAQNLSIKGLMTWSVNWDNGKSKAGVAYNWEFKTRYAALL
>NZ_CP048796.1|WP_167520921.1|2753269_2753440_-|hypothetical-protein
MKKSVYKASGLWNEKSFITLFIATSEKDVLSTIAFWANLDGARVDELSIEHFCSVH
>NZ_CP048796.1|WP_154622959.1|2754384_2754753_-|hypothetical-protein
MYILLLTSGLASAENLKFDDFFRENQDLNTPLLKKVIMAQAIGIYEIETVPEKELRILNFDQSEREKREMIKKLLIELDPKSYEYAKKALIFLQDLCDQGYGSIYKLDDENCDIIKKHNQKA
>NZ_CP048796.1|WP_163862121.1|2755984_2756698_-|carbonic-anhydrase-family-protein
MLYILATLTFSSQANSLWTYEGSGAPENWGKLSDEFKVCENGFNQSPINIDKVIDGKLKPLSINIHTHAQKIINNGHSIQINVNDDDDFSIDGATYQLKQFHFHSPSENEIKGKQYPLELHFVHSKNDGGVAVLAIMLEEGDANPAIEQVLSNIPEEKNQEKELGTNINLAALYPEDKSYYRFSGSLTTPPCTEGVVWLVMKQPIKASKEQIKKFQQALGHSNNRPVQPLYGRLIVN

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Crispr_ID: NZ_CP048796_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048796_2

2750776-2750926

TypeI-F

I-F

Consensus_repeat	Method
GTTATTTCTAAGCTGCCTATACGGCAGTGCACCA	PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGCAC	CRISPRCasFinder

2 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP048796_2

>merge|NZ_CP048796|2|2750776-2750926|PILER-CR,CRISPRCasFinder
ATTTCTAAGCTGCCTATACGGCAGTGCACCAGCTGCGGCGAATGCGGGGCAGAACTGGTTTTTTCTAAGCTGCCTATACGGCAGTGCACCTTGTCGTAGTCAGGCTCAATGCCAAACGTTATTTCTAAGCTGCCTATACGGCAGTGCACTA

>NZ_CP048796|2|2|2750776-2750926|PILER-CR
ATTTCTAAGCTGCCTATACGGCAGTGCACCAGCT	GCGGCGAATGCGGGGCAGAACTGGTT
TTTTCTAAGCTGCCTATACGGCAGTGCACCTTGT	CGTAGTCAGGCTCAATGCCAAACGTT
ATTTCTAAGCTGCCTATACGGCAGTGCACTA

>NZ_CP048796|2|2|2750777-2750924|CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGCAC	CAGCTGCGGCGAATGCGGGGCAGAACTGGTTT
TTTCTAAGCTGCCTATACGGCAGTGCAC	CTTGTCGTAGTCAGGCTCAATGCCAAACGTTA
TTTCTAAGCTGCCTATACGGCAGTGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048796.1\|WP_167520921.1\|2753269_2753440_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_154622958.1\|2751992_2752988_+\|chitinase	unknown	unknown	gnl\|CDD\|226000
NZ_CP048796.1\|WP_163862124.1\|2758915_2759230_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_167520922.1\|2759745_2759919_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_163862130.1\|2760370_2760640_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374351
NZ_CP048796.1\|WP_163862105.1\|2742543_2743569_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP048796.1\|WP_154621784.1\|2738582_2738948_+\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
NZ_CP048796.1\|WP_163862118.1\|2749522_2750500_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP048796.1\|WP_154623419.1\|2741893_2742535_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP048796.1\|WP_154622575.1\|2739994_2740777_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP048796.1\|WP_154622959.1\|2754384_2754753_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_163862127.1\|2759275_2759737_-\|lysis-protein	unknown	unknown	gnl\|CDD\|281263
NZ_CP048796.1\|WP_163862121.1\|2755984_2756698_-\|carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|239398
NZ_CP048796.1\|WP_154621785.1\|2737825_2738257_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_163862109.1\|2743571_2744519_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP048796.1\|WP_154623575.1\|2757152_2757494_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_163862116.1\|2745998_2749526_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP048796.1\|WP_004918815.1\|2759900_2760371_-\|lysozyme	unknown	unknown	gnl\|CDD\|381619
NZ_CP048796.1\|WP_154622574.1\|2739202_2739676_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048796.1\|WP_163862113.1\|2744515_2745787_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220

Protein	Function_ID	Function_description	E-value
NZ_CP048796.1\|WP_154622958.1\|2751992_2752988_+\|chitinase	gnl\|CDD\|226000	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism].	1.50735e-160
NZ_CP048796.1\|WP_163862118.1\|2749522_2750500_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	6.53629e-174
NZ_CP048796.1\|WP_163862105.1\|2742543_2743569_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP048796.1\|WP_154621784.1\|2738582_2738948_+\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	9.41496e-22
NZ_CP048796.1\|WP_163862127.1\|2759275_2759737_-\|lysis-protein	gnl\|CDD\|281263	pfam03245, Phage_lysis, Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	2.01098e-17
NZ_CP048796.1\|WP_154623419.1\|2741893_2742535_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.11279e-48
NZ_CP048796.1\|WP_154622575.1\|2739994_2740777_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	3.96479e-08
NZ_CP048796.1\|WP_163862121.1\|2755984_2756698_-\|carbonic-anhydrase-family-protein	gnl\|CDD\|239398	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carbon dioxide or carbonic acid, or in sensing carbon dioxide levels in the environment. Dioscorin is the major storage protein of yam tubers and may play a role as an antioxidant. Tobacco Nectarin may play a role in the maintenace of pH and oxidative balance in nectar. Mollusc nacrein may participate in calcium carbonate crystal formation of the nacreous layer. This subfamily also includes three alpha carbonic anhydrases from Chlamydomonas reinhardtii (CAH 1-3). CAHs1-2 are localized in the periplasmic space. CAH1 faciliates the movement of carbon dioxide across the plasma membrane when the medium is alkaline. CAH3 is localized to the thylakoid lumen and provides CO2 to Rubisco.	5.24958e-105
NZ_CP048796.1\|WP_004918815.1\|2759900_2760371_-\|lysozyme	gnl\|CDD\|381619	cd16900, endolysin_R21-like, endolysin R21-like proteins. Unlike T4 E phage lysozyme, the endolysin R21 from Enterobacteria phage P21 has an N-terminal SAR (signal-arrest-release) domain that anchors the endolysin to the membrane in an inactive form, which act to prevent premature lysis of the infected bacterium. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	3.98601e-77
NZ_CP048796.1\|WP_163862109.1\|2743571_2744519_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.3367e-139
NZ_CP048796.1\|WP_163862116.1\|2745998_2749526_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP048796.1\|WP_163862113.1\|2744515_2745787_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	4.18951e-126
NZ_CP048796.1\|WP_163862130.1\|2760370_2760640_-\|hypothetical-protein	gnl\|CDD\|374351	pfam16080, Phage_holin_2_3, Bacteriophage holin family HP1. Phage_holin_2_3 is a family of small hydrophobic phage proteins called holins with one transmembrane domain. Holins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	4.17579e-08

>NZ_CP048796.1|WP_163862118.1|2749522_2750500_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDLSPSDLKTILHSKRANMYYLEHCRVMQKEGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMATEVEWFTPQSEYRPTEYLQGWMSFWFDEQKRLSAAKTLQCSRINYLQKIWQNSRELKSEGFIYDDTVIQNALKTFQTRTDEANDTQILLLIEAQLTKVLYKYAANNTGQNKFTRQHQAIDKANTFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALIFDIADLIKDAIVLPWAFICAKEGATEQEFRQQILQSFIDNHALDFLFDTVKAIALQAGSQQQIQRSEL
>NZ_CP048796.1|WP_163862116.1|2745998_2749526_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKHALKRTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLKQSASRSTAVSCHWIRSRSRSQLLWIVGNRNKFNSQGYVPVNRTEKSFLGREDENDWKYLSLISTFAKLAALFHDWGKASRLFQDKLNPAIKTTFKGDPVRHEWVSTILFSLLVKNQGGESDEQWLETLIKNEWDELQLQQGATENYLLQSPLANLPDAAALLAWLILSHHRLPFLDEQELKNWQDIALNTHNQLLTEIRQNWGYENNDDISQFQRRIKMCFEFPNGLLSHSTVWIRTVQKVANELKNQLPLFRQAMADGSWRVIAHHARLCLMLGDHNYSSKGNDPQWRSEIALYANTHKINHIPQFKQKLDEHLVKVAEIAGDIAETLPYFESESSPVSDIPQLAYDKNSKGKFSWQEDAVNSIYQYRKKRDDEIKGYFIVNMASTGCGKTRANVKIMQALSEDKQSFRFILALGLRTLALQTGDEYKDKNSIGLNEGDIAVLIGSKAVAQLHQQAKENDDNLKAHDQDSSPQLNTNSNNLLPYQTGSESQEMLFDENEEELRWAEDKWQGVLPEELLSTVLTRAKDRALLYAPVLACTIDHIMGATETVRGGRYILPCLRLMSSDLVIDEVDDFTDSGSIAVARLIYMAGLLGRKVMISSATITPDTALAYFHAYQSGWYAYAKSRQQPLEVGCLWVDEGEYDSIKDKCQSSTLAATLVANDDNTPYLYQQYHDKFIKRRVNVLAQQPARRKALIVPTPKDNTQDSQQCYFNHILNAALAQHDQHAFLDKRTGIQVSFGVIRVANILPCVDLTRFLLECACPEGVEIRTMAYHSQQVLLLRHEQEQHLDSVLKRKEQVGEEANALNNPIIRQHLENVSIEGKAQHLLFILVATPVEEVGRDHDFDWAVVEPSSYRSVIQMAGRVRRHREGEVQQPNIALLQYNKKGFEGGIDNPFSRPGYENNHIGLGLSTHNLCDLVDEQQLLKSVDATPRIQQQTNYENKKHRDLACLEHAAIKYTLKTEYIFPPKQVEKPVATKRRSQSKNYHTLPRNAASHIWGYTHGCWWMTAVSQQLASFRSQMPSFRLVLEISPKGTIQFSEYTRESAWISVGPQNGIYYNKFPESIKKRLWLVRDYEQSIQSQGMDGKQATSLSRFYGELTFLKQQNRDVIYHYDDQMGIYPVIR
>NZ_CP048796.1|WP_163862113.1|2744515_2745787_-|type-I-F-CRISPR-associated-protein-Csy1
MLDPAIEAFFEERKEGWLKKTLKASMSEDEVSQIKQKCEEVFALSQWLPNAAKRAGQISLSTHPCTFSHPSARKNKNGSVSAIIANAKAANDGFLRSGNVEVEPDALGNAAALDVYKFLTLQMYDGKTLLAHIEAETSLAKSLLTFEGMPYEQLREGFLAMSAADDSVVTSSKIKQVYFPVWTDEDDYHLLSPLTPSGLLFEMRRRIDDIRFSEQTKELRELKRKREYSEIGFKEIYGITTIGFGGTKPQNISVLNNQNAGKAHLLPSLPPVLNIRETRLPKTNFFTDVINPWHSKETFQAFHGLITLPKEKINSDFAEYRDNRIQEYVDYIIVMMWKIRRILEQEKVVLPVNIAKYQQTWLFPDTEEQRNNMEDWLEILIPEIARQFIAGYKVVNGKKALFLGNDEFNFIKDLVAKNKELLR
>NZ_CP048796.1|WP_163862109.1|2743571_2744519_-|type-I-F-CRISPR-associated-protein-Csy2
MSKPMNLLKLPHLKVHNANALSSPFTIGFPAMTAWLGFMHALELKLRKIGFSALEFESIAVISHECNLQTYRGRDDFVNSIIGTGNPLDKEGNRSAFIEEARCHLDVSLVIHFSDADNEQGDVLLDTANVHRVTEILSTMKLAGGDILSAKKPEIYYLPANDRNGSYKRNLLNSLMPGYALVERRDLMVASMEEGQDAMDALLDYVTVNNQCIEIESKNESKDKSFEWKTQRKTNGWIVPIATGYQGISSLGIAKNQRDPNVPHRFAESVVTLGQFVMVNKIGHLNEMLWEYHTDLENNLYLCQQVESQYFTRGE
>NZ_CP048796.1|WP_163862105.1|2742543_2743569_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTSWKNRTECIPLALQEKSVRGTISNRLKGPVKNDPLKLNAEVEKANLQTVDACALGTQQDTLKHQFTLKILGGVETPSACNNALFKESYTKAAKEYIEKESFRELGLRYAHNIANARFLWRNRVGAEKIEVEVKILSEGLEQQWTFDATQYSIRSFDQQDEKVNELGAKIAAALANSEGALLLEITTYTLLGQSQEVYPSEELVLDKGKGSKSKILYHVNGHAAMHSQKIGNALRSIDTWYPDYHDDVNSGGAIAIEPYGAVTNLGRAYRTPGAKQDFYTHFDKWARGEKLARIEDEHYVMAVLVRGGVFGESDK
>NZ_CP048796.1|WP_154623419.1|2741893_2742535_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEITLLPDSTIPLDFLWQRVYQQIHIALVENKSETGHSEVAVAFPEYGSVGFRLGKKIRLMANTEAMLAQLNVNHWLARLSDYVHVKSILTVPENAIPVSYVRQHVKGKKRTELDIQKKAQFLSIKSGQPAEVCLHVLRKNQVNEFSRLPFIWMESQQSKSKYEGAIHRPFPLFIRCISAGKAQLGGFNCYGLSQQVGRDVELATVPHF
>NZ_CP048796.1|WP_154622575.1|2739994_2740777_-|elongation-factor-Tu
MKAFVVFLGGLLFSSLAFSSVNSVMLLGDDYRYNLVNAFPNKKFVAPKVSNSLIQDVKQAFSQESIILVVNMADGPTQKLRESILVARQSGHNSVQIYFHGKHLPKEMLDDEDFQQLMSLAIEEVNELLNLYDMQVTAVYHDWLDDSFEKFLSQKNTVERVLPEKAILMNQIYSHAYIFSKEEAASNDAIMDGTVIEFACQDVISSGTVRVQEPIQRGETYSNIILQLENPTLIPIYARCLGTLNNKLSMAFITISKNDI
>NZ_CP048796.1|WP_154622574.1|2739202_2739676_-|hypothetical-protein
MNKMTKLSGLLILATSLSLAPYVSYAEPNGGQGHGQNKEHPKNKGNKSNQGNGKDKRHDASSDKNNTLSVALTYNEARALALDSGITGYNALPPGIAKNFARGKPLPPGIAKKAVPQSMLLQLPHYPGYEWNIVGNDLVLIALSTAIVTTIINDVFD
>NZ_CP048796.1|WP_154621784.1|2738582_2738948_+|DUF305-domain-containing-protein
MKKILPIATLIAASVSLSAFANSGHSMHMSSSTTNEMQKELNQSMDKMHSDMAKSMNEQNADVAFAQGMIAHHLGAIEMAKIELKYGTDPEMKKLAEQIINAQGPEIEQMQKWLEKNKDKK
>NZ_CP048796.1|WP_154621785.1|2737825_2738257_+|hypothetical-protein
MKKYLLPISLFINLVLLIAIIVMATLFFNLKGKIDTTVAQIKNGQYAELIKDNTAKLIPEGLKRIDTIQPGQSQCAYFYQNIDSITEYLTANPTIAGAETYIKQLNNLKKSAEKAPSALKETACEKGVSTINYISEKISTVTD
>NZ_CP048796.1|WP_154622958.1|2751992_2752988_+|chitinase
MSSNDITNTSLVDDAATMPDISNKKIMMGFWHNWAAGTSDGYQQGQFTNMDLTDIPVEYNVVAVAFMKGEGIPTFKPYNLTDTEFRRQVGVLNSQGRAVLISLGGADAHIALTSGDEDKLTNEIIRLVEVYGFDGLDIDLEQAAIGAANNKTVLPAALKKVKAHYAAEGKNFIISMAPEFPYLRINGTYLDYITALEGYYDFIAPQYYNQGGDGIWVDQTTAGTGAWLAQNNDAMKEDFLYYLTESLVTGTRGYTKIPASKFVIGLPSNNDAAGSGYVVDKQAVYNAFSRLDAQNLSIKGLMTWSVNWDNGKSKAGVAYNWEFKTRYAALL
>NZ_CP048796.1|WP_167520921.1|2753269_2753440_-|hypothetical-protein
MKKSVYKASGLWNEKSFITLFIATSEKDVLSTIAFWANLDGARVDELSIEHFCSVH
>NZ_CP048796.1|WP_154622959.1|2754384_2754753_-|hypothetical-protein
MYILLLTSGLASAENLKFDDFFRENQDLNTPLLKKVIMAQAIGIYEIETVPEKELRILNFDQSEREKREMIKKLLIELDPKSYEYAKKALIFLQDLCDQGYGSIYKLDDENCDIIKKHNQKA
>NZ_CP048796.1|WP_163862121.1|2755984_2756698_-|carbonic-anhydrase-family-protein
MLYILATLTFSSQANSLWTYEGSGAPENWGKLSDEFKVCENGFNQSPINIDKVIDGKLKPLSINIHTHAQKIINNGHSIQINVNDDDDFSIDGATYQLKQFHFHSPSENEIKGKQYPLELHFVHSKNDGGVAVLAIMLEEGDANPAIEQVLSNIPEEKNQEKELGTNINLAALYPEDKSYYRFSGSLTTPPCTEGVVWLVMKQPIKASKEQIKKFQQALGHSNNRPVQPLYGRLIVN
>NZ_CP048796.1|WP_154623575.1|2757152_2757494_-|hypothetical-protein
MSTEKVEYKVVGKGILNAFWFGLIVFIIALIINHVNPHSHYGGWSTLSRGLSMVFIIFGAGVYCFFCFIIAINEWLDNRKKSHVNTEKAMIATFLHGTVALFVGGCTLIIFYQ
>NZ_CP048796.1|WP_163862124.1|2758915_2759230_+|hypothetical-protein
MELQKLIEILELQNERLAHLEEMNLSVHNELVASNLSISFLIQALNDVAGNDKVVVAFKNLIDAMDMSVLLKEILPNSSEYQLEKAGKQINEKLRAILNAFAQE
>NZ_CP048796.1|WP_163862127.1|2759275_2759737_-|lysis-protein
MVTAMNKVRALLFIAAWVAIWGMWKQHERIGELNTKNAALLVELTEQVKINEDYQERVQALHKLDTKHIQELTNAKIEIDKLRIAAERNPERVYIKASCKKAEGTTAPGLDDAITARPTDSAIRNYWLLRQRIAESNQIILGLQDFIRLECLK
>NZ_CP048796.1|WP_167520922.1|2759745_2759919_-|hypothetical-protein
MSWKPIVVVMCFMLLAISIIAFGAYRITDNTCSIDKVSLEKRCQKAIDHYKGRQVNF
>NZ_CP048796.1|WP_004918815.1|2759900_2760371_-|lysozyme
MSLKQKLTVLVGAGASAIALTVIAYFEGVRYEPYEDVGGVLTVCYGHTGKDIVPNKVYSKEECNELLELDFMRTKLQVDRLVKVPVSEHTKAALYSFAFNVGTGAFAKSTMLKKLNAGDQYGACEELKKWVYAGGKVWRGLVNRREAEAAICHGNL
>NZ_CP048796.1|WP_163862130.1|2760370_2760640_-|hypothetical-protein
MRMDKYSNAAYGSAGLTAFFASLSLYEWGFIIGMAFSIILGLATFFMNRREQRKRTRLFEELVNKTDPLNPSATARKATELMAKAPKDI

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Crispr_ID: NZ_CP048796_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048796_3

2877805-2877881

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048796_3

>merge|NZ_CP048796|3|2877805-2877881|CRISPRCasFinder
GTATTAATCTACCTGTACGGCAGTGAACGTTAACAGTAAAATCATCGATTTCTAAGCTGATAAGATATCAGTAAAAT

>NZ_CP048796|3|3|2877805-2877881|CRISPRCasFinder
GTATTAATCTACCTGTACGGCAGTGAAC	GTTAACAGTAAAATCATCGA
TTTCTAAGCTGATAAGATATCAGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048796.1\|WP_163862340.1\|2880375_2882016_-\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
NZ_CP048796.1\|WP_154622978.1\|2887959_2888793_-\|flagellar-basal-body-rod-modification-protein	unknown	unknown	gnl\|CDD\|235847
NZ_CP048796.1\|WP_154622979.1\|2886708_2887929_-\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NZ_CP048796.1\|WP_163862346.1\|2888805_2889210_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_CP048796.1\|WP_163862337.1\|2876405_2876675_+\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP048796.1\|WP_154623802.1\|2874738_2875155_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181183
NZ_CP048796.1\|WP_154623804.1\|2875615_2876359_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP048796.1\|WP_154622981.1\|2885135_2885918_-\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP048796.1\|WP_154623803.1\|2875174_2875603_+\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|183160
NZ_CP048796.1\|WP_163862332.1\|2871728_2873087_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|236652
NZ_CP048796.1\|WP_163862343.1\|2882156_2883137_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
NZ_CP048796.1\|WP_154622985.1\|2879411_2880347_-\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
NZ_CP048796.1\|WP_154623798.1\|2871284_2871728_+\|flagella-biosynthesis-chaperone-FliJ	unknown	unknown	gnl\|CDD\|235563
NZ_CP048796.1\|WP_163862334.1\|2873250_2873733_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|235909
NZ_CP048796.1\|WP_154623806.1\|2876677_2877460_+\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP048796.1\|WP_154622988.1\|2884277_2885009_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP048796.1\|WP_163862329.1\|2869909_2871277_+\|flagellum-specific-ATP-synthase-FliI	unknown	unknown	gnl\|CDD\|181182
NZ_CP048796.1\|WP_154622982.1\|2883136_2884240_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP048796.1\|WP_154622980.1\|2885937_2886693_-\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP048796.1\|WP_154623801.1\|2873738_2874746_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849

Protein	Function_ID	Function_description	E-value
NZ_CP048796.1\|WP_163862340.1\|2880375_2882016_-\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
NZ_CP048796.1\|WP_154622978.1\|2887959_2888793_-\|flagellar-basal-body-rod-modification-protein	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	8.56493e-48
NZ_CP048796.1\|WP_154622979.1\|2886708_2887929_-\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	8.12661e-152
NZ_CP048796.1\|WP_163862346.1\|2888805_2889210_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	1.25563e-69
NZ_CP048796.1\|WP_163862337.1\|2876405_2876675_+\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	1.40857e-32
NZ_CP048796.1\|WP_154623802.1\|2874738_2875155_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181183	PRK07963, fliN, flagellar motor switch protein FliN; Validated.	1.1408e-76
NZ_CP048796.1\|WP_154623804.1\|2875615_2876359_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	1.46039e-123
NZ_CP048796.1\|WP_154622981.1\|2885135_2885918_-\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	5.85854e-154
NZ_CP048796.1\|WP_154623803.1\|2875174_2875603_+\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	2.12625e-30
NZ_CP048796.1\|WP_163862332.1\|2871728_2873087_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|236652	PRK10118, PRK10118, flagellar hook length control protein FliK.	4.14906e-31
NZ_CP048796.1\|WP_163862343.1\|2882156_2883137_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	1.76073e-139
NZ_CP048796.1\|WP_154622985.1\|2879411_2880347_-\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	6.62002e-100
NZ_CP048796.1\|WP_154623798.1\|2871284_2871728_+\|flagella-biosynthesis-chaperone-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	9.43183e-35
NZ_CP048796.1\|WP_163862334.1\|2873250_2873733_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.42144e-59
NZ_CP048796.1\|WP_154623806.1\|2876677_2877460_+\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	3.63224e-68
NZ_CP048796.1\|WP_154622988.1\|2884277_2885009_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	5.34018e-98
NZ_CP048796.1\|WP_163862329.1\|2869909_2871277_+\|flagellum-specific-ATP-synthase-FliI	gnl\|CDD\|181182	PRK07960, fliI, flagellum-specific ATP synthase FliI.	0
NZ_CP048796.1\|WP_154622982.1\|2883136_2884240_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP048796.1\|WP_154622980.1\|2885937_2886693_-\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	1.28146e-111
NZ_CP048796.1\|WP_154623801.1\|2873738_2874746_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	5.33949e-163

>NZ_CP048796.1|WP_154623806.1|2876677_2877460_+|flagellar-type-III-secretion-system-protein-FliR
MLTMTSETLTLWLSQGFYPFIRLLALFGTAPFFNEKQSITKVRVILAFFVILIVSPQLPVVNIPLFSAMGLWVIVQQLVIGVAIGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRILNLIMLLLFLSFDGHLWLIYILVHSFELIPIQVSPLNRDGFWSLVQFANSIFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYSERLIHQAFEQLSLMFGLFSG
>NZ_CP048796.1|WP_163862337.1|2876405_2876675_+|flagellar-biosynthesis-protein-FliQ
MTPESVMAMGTEAMKIALMLAAPLLLAALFAGLIISLLQAATQVNEMTLSFIPKILSVIAVIIIAGPWMLNLLLDYMRTLFSNLPFIIG
>NZ_CP048796.1|WP_154623804.1|2875615_2876359_+|flagellar-type-III-secretion-system-pore-protein-FliP
MFPLKSTTVIASLLFILPTHALAALPPIMSQTLPDGGQSWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSEDKISLETALERGTAPFRTFMLGQTRETDLALFARIAKVGDIQEAKDVPMRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSFFN
>NZ_CP048796.1|WP_154623803.1|2875174_2875603_+|flagellar-biosynthetic-protein-FliO
MKTTPFISHTEQPSSQTPPAISNSDSLAQISGALGGIILLILAGAWLVKKIGFAPKSFGKNPLVNVKSHCSLGNKERVVVVEINNEWLVLGVTAQSVNLLHQCPAKQATTLTSVTEPLTFQSLLKKKQEAAQQAASNISSCQ
>NZ_CP048796.1|WP_154623802.1|2874738_2875155_+|flagellar-motor-switch-protein-FliN
MSEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSDINLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSDNYGIRITDIITPSERMRRLSR
>NZ_CP048796.1|WP_154623801.1|2873738_2874746_+|flagellar-motor-switch-protein-FliM
MSDNILSQAEIDALLNDDAPASNESATQSKDKEHIRPYDPNTQRRVIRERMQSLEIINERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIINRMLKLALSAYRDAWKPIADIDVEYVRSEMQVKFTNITTSPNDIVVTTPFLVEIGNTIGEFSICIPIAMIEPLRERLINPPVEQGHQENEAWVSNLVTQVKRSELELVANFVDIPLRISRLLQLQKGDVIPIEKPDRLIVSVDGVPVLTSQYGAQNGQYALRVEHLINPVLNTLDEESTNE
>NZ_CP048796.1|WP_163862334.1|2873250_2873733_+|flagellar-basal-body-associated-protein-FliL
MSSSSNASKSSNKGLLVLLTLLAIAGVGFGGYTWWTTQQIAKSANEEDTPSNISQPIFMDLEPFTVNLPGLNEAPDRVLYINITLRLGNEKSRKQLHDYLPEVRSRLLLLLSEQKSKVLSSHEGKLQLMQSIKDTLSPTMIPGEKDQQITDVLFTTFILR
>NZ_CP048796.1|WP_163862332.1|2871728_2873087_+|flagellar-hook-length-control-protein-FliK
MDVNTHNAAKAAITNSKNIGNAQQNEPRFEDNQAPAVPFQAVLDNQQPAPQKTSTNHSTLENAPNSTSVSTNTPTAAAERDTSPIKDKTEHAIDQLNYSRHIRNEANQPALQAQLLNQADAVEQVWLTNLKSDLNQQALASVSTKFADGHRSALVPFAQKTSPLNSQLVANPDADESIDFRAQMQLAEDEESTSIAAFIKNEKQERKDQPLFSLNDKREIPAKELTHDFMPLNKKLTDKDPLSVTQNVSVVDNSQNIKGAFTSTVENGSFQVTPTQTVVGTTVNLAAPLVNSHAASANMPVVPMPSGVPLGSDAWQQQLNQHMLFFSRQGISHAQIRLHPEELGSLNVHLRIEDNQAVMHFVSPHSHVRAAMETMMPMLRNALQESGIHLAQGSVGQDNFSDQNGSDAHSQNSHEHQLHTRHSVGGVVNSDSVTATHITSIAHSRGGIDTFA
>NZ_CP048796.1|WP_154623798.1|2871284_2871728_+|flagella-biosynthesis-chaperone-FliJ
MSKNNALTTLLSLAIEASEEAAKVLAQVRQTQVQMTQQLNMLENYQTEYRQKLNQTLHSGIDADKWQNYQQFLVTLELTIEQQQQQLSLWEQRVNEANRHWQEKQQRVNAFDTLIQRAEQTKNQRLSRLEQKQMDEYAQRATLRRNQ
>NZ_CP048796.1|WP_163862329.1|2869909_2871277_+|flagellum-specific-ATP-synthase-FliI
MTVRMSRWIAALEGFESRMKGIPMTRHYGRLTKITGLVMEAEGIKMPLGATCIIERTINGRHDEVVCEVVGFNGSRMLLMPLADLEGIAPGARVYAQTTGDDGQTSRLLPLGDELLGRILDAQGTPLDGKGPLDVKQRAPLITPPINPLERTPIHSVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARFTQADIIVVGLIGERGREVKDFIENILGAEGLKRAVVVAAPADVSPLLRMQGASYATRIAEYFRDLGKNVLLIMDSLTRYSMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKNGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAIDIEASISRAMTELIDKQHYRQIQRFKQLTSSYQRNRDLINVGAYAAGSDPLLDMAIQYYPRMSKFLQQDIDERCDYQSACEQLAHAVPNES
>NZ_CP048796.1|WP_154622985.1|2879411_2880347_-|flagellar-hook-associated-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRINQSENRNQQYVASRGFAKTGMLLQMSILTQMTDITTQIDTTIIQASNQASLSDSDRLSLAEQLSGLKDQLVALGNTTDGNGRYIFAGFKSDKPPFEVDASGEVIYKGGDKAIMQNVSSDREMTTYFTGAQVFTTDSTNTVEVFKRLNAGIAALKTPQENATQAEREAAQKALGEANSAIKSALDKISNIEAKQGLQLQEIDKLDFLADTRSIQNSQRMSNLLDTNWTGATSDYYKEMAMFQASQDIFKDLNSMSLFGGR
>NZ_CP048796.1|WP_163862340.1|2880375_2882016_-|flagellar-hook-associated-protein-FlgK
MLNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYFSHVRREFDEFINQQYGQSRARSGEYEAYAKNSSQVDDLLTNDIEDISSNIGSFFTALDAASSDASDKTLIDVFLGKSNALVGQFKEANRRLQDMERDVNRQIETKVRDINTYAEKIAGLNQQIARVRSVSGSEPNDLLDVRDRLVSEINSLVGVKVIEQNGNYNVTFANGLPLVTGEHANRLEAVPSSQDDSRFSIGFVGANGQAREIPDDAFRGGELSGVLRSRKEVIDPAYQKINKLALVFASKFNEIHQKGFDANGNTGKDFFEIGKGNVVSNTFNRGQADFDFHYSDVSQVTGNNYEMRFDGKNWDVTRLPEGTKVTVDASTADTLKFDGIALKISNNNAQSGDAFLVKPVNGVINGMQTLVSEAANFAAAGSKGSGPGDNENLKELVKLQDQKLVGGTSTFSDYYATIVNDVGNQTKQAQIDSETQNKMTESFYEQQQAISGVNMNEESIQMQKIQQFFNANAQVLKTVDDLFNALMRAF
>NZ_CP048796.1|WP_163862343.1|2882156_2883137_-|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MNDMQLMQGAAFDLQSLSSLKREIADSPDKGLRQVTQQLEATFVQMMLKSMRDALPQDGLFSSDQTRMLTSMYDQQIAQDLSNKGLGFGEMMYQQLKQTQGETSSPEEPIKPFSMESKLLDSLPNPAMAQIVRRFAPLGDALSSPMGKVKSLSLNSQNFISQLIEPAKAASQKSGISPLLVLAQAALESGWGRREILTAEGKASHNLFGIKAGKSWQGPVTNIMTTEVINGKSMKMRDNFRVYASYEEAIADYINLLTENPRYHSVKHAQSPEVAARRLHQAGYATDPNYSDKLIALINQIRSHHGVDKTASKAVQAYTVDLSDIF
>NZ_CP048796.1|WP_154622982.1|2883136_2884240_-|flagellar-basal-body-P-ring-protein-FlgI
MNKLVTLLLTLLCVFVAPVNGERIKDLTTVQGVRDNALIGYGLVVGLDGTGDQTMQTPFTTQSLSNMLSQMGITVPPGTNMQLKNVAAVMVTAKLPPFARSGQSLDVVVSSMGNAKSLRGGTLLMTPLKGVDGQIYAMAQGNILVGGAGASAGGSSIKVNQLAGGRITGGATIERELPTSFGQNGVINLQLNDDSFTLAQDISDAINRLRGAGTATPLDSRTVQLRVPMTNSEQVRFLAQVQELNVRTPIAEAKVILNSRTGSVVINRSVTLESCAVAHGSLSVMVDRQTQVSQPDTPFAGGQTVVTRNTNIGLREQGGALQKVNASVQLNQVIQALNTLGATPTDLMSILQAMESAGCLRAKLEII
>NZ_CP048796.1|WP_154622988.1|2884277_2885009_-|flagellar-basal-body-L-ring-protein-FlgH
MMKSGIVPQNKENSLFSPSKVLVLTLVFAISGCAYVKPRPLVDTQTSALPTAPTAPAPNGAIFQSAQPAYYGYQPLFEDRRPRNVGDILTINLQENVSASKNSSANANRSGKTGFLAAILPGFMQGWLGGSNTELDVKGSSDFTGKGGANANNTFKGTITVTVDQLLANGNLHVVGEKRIAINQGTESIRFSGVVNPRTIGADNNVSSTQVADARIEYVGDGYINESQTMGWLQRFFLNVSPY
>NZ_CP048796.1|WP_154622981.1|2885135_2885918_-|flagellar-basal-body-rod-protein-FlgG
MIRSLWIAKTGLDTQQTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNVRQPGAMSSEQTSLPSGLQLGTGSRPVATMRIHSQGALNKTGNTTDIAIKGQGFLHVQMPDGSDAYTRDGALQPNQDGQLVTSSGYQIVPAITIPDNANSLSIASDGTVSITVYGDNQPQQIGQITLTTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGLLYQHMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQMLQRLTQL
>NZ_CP048796.1|WP_154622980.1|2885937_2886693_-|flagellar-basal-body-rod-protein-FlgF
MDHVIYTAMGGARHALENQAIVSNNIANVSTSGFKAQLAAMRAVPINGDSEQTRTLVVASTPGADMSQGPLNYTGRPMDVSLNDKHFLAVELADGSEAYTRNGNIQISSEGELVIGEHRLQGDGGPINVPPNAELTIGEDGTVTALLATDPPTMLGQIGRLKIVEAQPQDLLRGEDGLFHLSPQAIAANGDVLAQSERASLTSGVIEGSNVNAAEAMVSMIANARYFEMQMKVVRSADENAQKANQLLAVS
>NZ_CP048796.1|WP_154622979.1|2886708_2887929_-|flagellar-hook-protein-FlgE
MSFSQAVSGLNAASAGLDTIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNFKDGPITRTDRPTDVAISGNGFFRVQNQNGDIFYSRDGQFTRDKSGNLVNNQGMIITGYPAGLDENGNIVVQSGGVPQGLNIPTDMMDARASDTAKLTINLNSEDKVKSKPFDVNNPDDTGSYNFSTTMSAFDSQGNTHEISVYFVKTDDNKWTAYGRDSGDKVAKKLGDLEFDGNGRLASPTNAVFAFDYNGLNGANDGTLQVDLNKTRQQKVSESSVSAIDVNGYPAGEYTNFKIEDNGLIVANYSNQQKRVVGQVALSAFANPSGLVSQGGNVWASSNASGNPMDGVPGVGQFGKLTSGALESSNVDMSQELINMIVMQRNYQSNAQTIKTQDQMLQTMVNLR
>NZ_CP048796.1|WP_154622978.1|2887959_2888793_-|flagellar-basal-body-rod-modification-protein
MGIAATMYDSLDNTTTGPEPLKSNIPTKSQTDDMRDTFLKMIVTQMQNQDPTKPMENTDLTSQLAQIATLESMNKLSDKVSGISSQIGSGQSLQATQLVGKGVLIPRNEIVLAPLKKQESGENSDISKPTNPLPDDELNRSLSVLNDSGDESEVSQDDYISSPFGFFLPKHADSVEITIRDKNRAVVRTISYETEVKPDIYDMSWDGRDNNGQLVADTKSKYFFDVKAIKNGAEIEVTKLGYTRVNGVTPGTDAPLLDVGIGQSVPLSSIFKVYPSS
>NZ_CP048796.1|WP_163862346.1|2888805_2889210_-|flagellar-basal-body-rod-protein-FlgC
MALLSIFDISASALTAQSQRLNVSASNMANAESVVGPDSEPFRAKQLVFQMSPQGRNEVGGVRVSQLIEDPTPPRMEYKPGHPLADEKGYVRMPNVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTLTIGQ

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Crispr_ID: NZ_CP048796_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048796_4

2878170-2879157

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRT

16 spacers

The CRISPR arrays of NZ_CP048796_4

>merge|NZ_CP048796|4|2878170-2879157|PILER-CR,CRISPRCasFinder,CRT
TTCCTAAGCTGCCTATACGGCAGTGAACCTTCTGTCTGCTCAGTTACTCTTGCATCGATCTTTCTAAGCTGCCTATACGGCAGTGAACGTGATGCTGCGGGTAACTTTATTGCGTTTGATTTTCTAAGCTGCCTATACGGCAGTGAACCAGGGAAATTTCCCTCAGTCGCATTATTCAAATTTCTAAGCTGCCTATACGGCAGTGAACTCAGCGAGATTGTGCATGATTGGTTTCTGTGTTTTCTAAGCTGCCTATACGGCAGTGAACTTGTTTCACCGTTTTTGATATATTCACCTATATTTCTAAGCTGCCTATACGGCAGTGAACATTCAGGTACTAAATTTTGGGTGGGAGAAATATTTCTAAGCTGCCTATACGGCAGTGAACCAGATAAAAGTTAGTATTTGTTGTATTCGCTCTTTCTAAGCTGCCTATACGGCAGTGAACATGTAAAATAATCTTTTACACGCAAATTTACTTTTCTAAGCTGCCTATACGGCAGTGAACTTATCACTACACCGGTCGTGCTGGATGATAAATTTCTAAGCTGCCTATACGGCAGTGAACGATTATCTTGTGTCTCAGCTGCTTGTTTGTCTTTTCTAAGCTGCCTATACGGCAGTGAACATGTAAAATAATCTTTTACACGCAAATTTACGTTTCTAAGCTGCCTATACGGCAGTGAACATGACTGTTGCTCTTTAAGTGCCGCAACTGACTTTCTAAGCTGCCTATACGGCAGTGAACTGACAATGCTTGTTAATCCTATTATATTTATATTTCTAAGCTGCCTATACGGCAGTGAACCTGGCGTATCCTCAGCACCTCTTTGCTGATCTTTTCTAAGCTGCCTATACGGCAGTGAACCCAAAACGCCAGCTCCGGTGTCCCATTCGCGGTTTCTAAGCTGCCTATACGGCAGTGAACTATCTTTTGTAACTGATACAATATTTCCTACCTTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP048796|4|3|2878170-2879157|PILER-CR
TTCCTAAGCTGCCTATACGGCAGTGAAC	CTTCTGTCTGCTCAGTTACTCTTGCATCGATC
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTGATGCTGCGGGTAACTTTATTGCGTTTGAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CAGGGAAATTTCCCTCAGTCGCATTATTCAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCAGCGAGATTGTGCATGATTGGTTTCTGTGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTGTTTCACCGTTTTTGATATATTCACCTATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTCAGGTACTAAATTTTGGGTGGGAGAAATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CAGATAAAAGTTAGTATTTGTTGTATTCGCTC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGTAAAATAATCTTTTACACGCAAATTTACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTATCACTACACCGGTCGTGCTGGATGATAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATTATCTTGTGTCTCAGCTGCTTGTTTGTCT
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGTAAAATAATCTTTTACACGCAAATTTACG
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGACTGTTGCTCTTTAAGTGCCGCAACTGAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TGACAATGCTTGTTAATCCTATTATATTTATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTGGCGTATCCTCAGCACCTCTTTGCTGATCT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCAAAACGCCAGCTCCGGTGTCCCATTCGCGG
TTTCTAAGCTGCCTATACGGCAGTGAAC	TATCTTTTGTAACTGATACAATATTTCCTACC
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP048796|4|4|2878170-2879157|CRISPRCasFinder
TTCCTAAGCTGCCTATACGGCAGTGAAC	CTTCTGTCTGCTCAGTTACTCTTGCATCGATC
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTGATGCTGCGGGTAACTTTATTGCGTTTGAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CAGGGAAATTTCCCTCAGTCGCATTATTCAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCAGCGAGATTGTGCATGATTGGTTTCTGTGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTGTTTCACCGTTTTTGATATATTCACCTATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTCAGGTACTAAATTTTGGGTGGGAGAAATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CAGATAAAAGTTAGTATTTGTTGTATTCGCTC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGTAAAATAATCTTTTACACGCAAATTTACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTATCACTACACCGGTCGTGCTGGATGATAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATTATCTTGTGTCTCAGCTGCTTGTTTGTCT
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGTAAAATAATCTTTTACACGCAAATTTACG
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGACTGTTGCTCTTTAAGTGCCGCAACTGAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TGACAATGCTTGTTAATCCTATTATATTTATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTGGCGTATCCTCAGCACCTCTTTGCTGATCT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCAAAACGCCAGCTCCGGTGTCCCATTCGCGG
TTTCTAAGCTGCCTATACGGCAGTGAAC	TATCTTTTGTAACTGATACAATATTTCCTACC
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP048796|4|2|2878170-2879157|CRT
TTCCTAAGCTGCCTATACGGCAGTGAAC	CTTCTGTCTGCTCAGTTACTCTTGCATCGATC
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTGATGCTGCGGGTAACTTTATTGCGTTTGAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CAGGGAAATTTCCCTCAGTCGCATTATTCAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCAGCGAGATTGTGCATGATTGGTTTCTGTGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTGTTTCACCGTTTTTGATATATTCACCTATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTCAGGTACTAAATTTTGGGTGGGAGAAATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CAGATAAAAGTTAGTATTTGTTGTATTCGCTC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGTAAAATAATCTTTTACACGCAAATTTACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTATCACTACACCGGTCGTGCTGGATGATAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATTATCTTGTGTCTCAGCTGCTTGTTTGTCT
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGTAAAATAATCTTTTACACGCAAATTTACG
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGACTGTTGCTCTTTAAGTGCCGCAACTGAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TGACAATGCTTGTTAATCCTATTATATTTATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTGGCGTATCCTCAGCACCTCTTTGCTGATCT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCAAAACGCCAGCTCCGGTGTCCCATTCGCGG
TTTCTAAGCTGCCTATACGGCAGTGAAC	TATCTTTTGTAACTGATACAATATTTCCTACC
TTTCTAAGCTGCCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048796.1\|WP_163862340.1\|2880375_2882016_-\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
NZ_CP048796.1\|WP_154622978.1\|2887959_2888793_-\|flagellar-basal-body-rod-modification-protein	unknown	unknown	gnl\|CDD\|235847
NZ_CP048796.1\|WP_154622979.1\|2886708_2887929_-\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NZ_CP048796.1\|WP_163862346.1\|2888805_2889210_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_CP048796.1\|WP_163862337.1\|2876405_2876675_+\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP048796.1\|WP_154623802.1\|2874738_2875155_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181183
NZ_CP048796.1\|WP_154623804.1\|2875615_2876359_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP048796.1\|WP_154622981.1\|2885135_2885918_-\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP048796.1\|WP_154623803.1\|2875174_2875603_+\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|183160
NZ_CP048796.1\|WP_163862332.1\|2871728_2873087_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|236652
NZ_CP048796.1\|WP_163862343.1\|2882156_2883137_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
NZ_CP048796.1\|WP_154622985.1\|2879411_2880347_-\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
NZ_CP048796.1\|WP_154623798.1\|2871284_2871728_+\|flagella-biosynthesis-chaperone-FliJ	unknown	unknown	gnl\|CDD\|235563
NZ_CP048796.1\|WP_163862334.1\|2873250_2873733_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|235909
NZ_CP048796.1\|WP_154623806.1\|2876677_2877460_+\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP048796.1\|WP_154622988.1\|2884277_2885009_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP048796.1\|WP_163862329.1\|2869909_2871277_+\|flagellum-specific-ATP-synthase-FliI	unknown	unknown	gnl\|CDD\|181182
NZ_CP048796.1\|WP_154622982.1\|2883136_2884240_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP048796.1\|WP_154622980.1\|2885937_2886693_-\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP048796.1\|WP_154623801.1\|2873738_2874746_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849

Protein	Function_ID	Function_description	E-value
NZ_CP048796.1\|WP_163862340.1\|2880375_2882016_-\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
NZ_CP048796.1\|WP_154622978.1\|2887959_2888793_-\|flagellar-basal-body-rod-modification-protein	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	8.56493e-48
NZ_CP048796.1\|WP_154622979.1\|2886708_2887929_-\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	8.12661e-152
NZ_CP048796.1\|WP_163862346.1\|2888805_2889210_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	1.25563e-69
NZ_CP048796.1\|WP_163862337.1\|2876405_2876675_+\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	1.40857e-32
NZ_CP048796.1\|WP_154623802.1\|2874738_2875155_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181183	PRK07963, fliN, flagellar motor switch protein FliN; Validated.	1.1408e-76
NZ_CP048796.1\|WP_154623804.1\|2875615_2876359_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	1.46039e-123
NZ_CP048796.1\|WP_154622981.1\|2885135_2885918_-\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	5.85854e-154
NZ_CP048796.1\|WP_154623803.1\|2875174_2875603_+\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	2.12625e-30
NZ_CP048796.1\|WP_163862332.1\|2871728_2873087_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|236652	PRK10118, PRK10118, flagellar hook length control protein FliK.	4.14906e-31
NZ_CP048796.1\|WP_163862343.1\|2882156_2883137_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	1.76073e-139
NZ_CP048796.1\|WP_154622985.1\|2879411_2880347_-\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	6.62002e-100
NZ_CP048796.1\|WP_154623798.1\|2871284_2871728_+\|flagella-biosynthesis-chaperone-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	9.43183e-35
NZ_CP048796.1\|WP_163862334.1\|2873250_2873733_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.42144e-59
NZ_CP048796.1\|WP_154623806.1\|2876677_2877460_+\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	3.63224e-68
NZ_CP048796.1\|WP_154622988.1\|2884277_2885009_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	5.34018e-98
NZ_CP048796.1\|WP_163862329.1\|2869909_2871277_+\|flagellum-specific-ATP-synthase-FliI	gnl\|CDD\|181182	PRK07960, fliI, flagellum-specific ATP synthase FliI.	0
NZ_CP048796.1\|WP_154622982.1\|2883136_2884240_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP048796.1\|WP_154622980.1\|2885937_2886693_-\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	1.28146e-111
NZ_CP048796.1\|WP_154623801.1\|2873738_2874746_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	5.33949e-163

>NZ_CP048796.1|WP_154623806.1|2876677_2877460_+|flagellar-type-III-secretion-system-protein-FliR
MLTMTSETLTLWLSQGFYPFIRLLALFGTAPFFNEKQSITKVRVILAFFVILIVSPQLPVVNIPLFSAMGLWVIVQQLVIGVAIGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRILNLIMLLLFLSFDGHLWLIYILVHSFELIPIQVSPLNRDGFWSLVQFANSIFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYSERLIHQAFEQLSLMFGLFSG
>NZ_CP048796.1|WP_163862337.1|2876405_2876675_+|flagellar-biosynthesis-protein-FliQ
MTPESVMAMGTEAMKIALMLAAPLLLAALFAGLIISLLQAATQVNEMTLSFIPKILSVIAVIIIAGPWMLNLLLDYMRTLFSNLPFIIG
>NZ_CP048796.1|WP_154623804.1|2875615_2876359_+|flagellar-type-III-secretion-system-pore-protein-FliP
MFPLKSTTVIASLLFILPTHALAALPPIMSQTLPDGGQSWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSEDKISLETALERGTAPFRTFMLGQTRETDLALFARIAKVGDIQEAKDVPMRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSFFN
>NZ_CP048796.1|WP_154623803.1|2875174_2875603_+|flagellar-biosynthetic-protein-FliO
MKTTPFISHTEQPSSQTPPAISNSDSLAQISGALGGIILLILAGAWLVKKIGFAPKSFGKNPLVNVKSHCSLGNKERVVVVEINNEWLVLGVTAQSVNLLHQCPAKQATTLTSVTEPLTFQSLLKKKQEAAQQAASNISSCQ
>NZ_CP048796.1|WP_154623802.1|2874738_2875155_+|flagellar-motor-switch-protein-FliN
MSEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSDINLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSDNYGIRITDIITPSERMRRLSR
>NZ_CP048796.1|WP_154623801.1|2873738_2874746_+|flagellar-motor-switch-protein-FliM
MSDNILSQAEIDALLNDDAPASNESATQSKDKEHIRPYDPNTQRRVIRERMQSLEIINERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIINRMLKLALSAYRDAWKPIADIDVEYVRSEMQVKFTNITTSPNDIVVTTPFLVEIGNTIGEFSICIPIAMIEPLRERLINPPVEQGHQENEAWVSNLVTQVKRSELELVANFVDIPLRISRLLQLQKGDVIPIEKPDRLIVSVDGVPVLTSQYGAQNGQYALRVEHLINPVLNTLDEESTNE
>NZ_CP048796.1|WP_163862334.1|2873250_2873733_+|flagellar-basal-body-associated-protein-FliL
MSSSSNASKSSNKGLLVLLTLLAIAGVGFGGYTWWTTQQIAKSANEEDTPSNISQPIFMDLEPFTVNLPGLNEAPDRVLYINITLRLGNEKSRKQLHDYLPEVRSRLLLLLSEQKSKVLSSHEGKLQLMQSIKDTLSPTMIPGEKDQQITDVLFTTFILR
>NZ_CP048796.1|WP_163862332.1|2871728_2873087_+|flagellar-hook-length-control-protein-FliK
MDVNTHNAAKAAITNSKNIGNAQQNEPRFEDNQAPAVPFQAVLDNQQPAPQKTSTNHSTLENAPNSTSVSTNTPTAAAERDTSPIKDKTEHAIDQLNYSRHIRNEANQPALQAQLLNQADAVEQVWLTNLKSDLNQQALASVSTKFADGHRSALVPFAQKTSPLNSQLVANPDADESIDFRAQMQLAEDEESTSIAAFIKNEKQERKDQPLFSLNDKREIPAKELTHDFMPLNKKLTDKDPLSVTQNVSVVDNSQNIKGAFTSTVENGSFQVTPTQTVVGTTVNLAAPLVNSHAASANMPVVPMPSGVPLGSDAWQQQLNQHMLFFSRQGISHAQIRLHPEELGSLNVHLRIEDNQAVMHFVSPHSHVRAAMETMMPMLRNALQESGIHLAQGSVGQDNFSDQNGSDAHSQNSHEHQLHTRHSVGGVVNSDSVTATHITSIAHSRGGIDTFA
>NZ_CP048796.1|WP_154623798.1|2871284_2871728_+|flagella-biosynthesis-chaperone-FliJ
MSKNNALTTLLSLAIEASEEAAKVLAQVRQTQVQMTQQLNMLENYQTEYRQKLNQTLHSGIDADKWQNYQQFLVTLELTIEQQQQQLSLWEQRVNEANRHWQEKQQRVNAFDTLIQRAEQTKNQRLSRLEQKQMDEYAQRATLRRNQ
>NZ_CP048796.1|WP_163862329.1|2869909_2871277_+|flagellum-specific-ATP-synthase-FliI
MTVRMSRWIAALEGFESRMKGIPMTRHYGRLTKITGLVMEAEGIKMPLGATCIIERTINGRHDEVVCEVVGFNGSRMLLMPLADLEGIAPGARVYAQTTGDDGQTSRLLPLGDELLGRILDAQGTPLDGKGPLDVKQRAPLITPPINPLERTPIHSVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARFTQADIIVVGLIGERGREVKDFIENILGAEGLKRAVVVAAPADVSPLLRMQGASYATRIAEYFRDLGKNVLLIMDSLTRYSMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKNGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAIDIEASISRAMTELIDKQHYRQIQRFKQLTSSYQRNRDLINVGAYAAGSDPLLDMAIQYYPRMSKFLQQDIDERCDYQSACEQLAHAVPNES
>NZ_CP048796.1|WP_154622985.1|2879411_2880347_-|flagellar-hook-associated-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRINQSENRNQQYVASRGFAKTGMLLQMSILTQMTDITTQIDTTIIQASNQASLSDSDRLSLAEQLSGLKDQLVALGNTTDGNGRYIFAGFKSDKPPFEVDASGEVIYKGGDKAIMQNVSSDREMTTYFTGAQVFTTDSTNTVEVFKRLNAGIAALKTPQENATQAEREAAQKALGEANSAIKSALDKISNIEAKQGLQLQEIDKLDFLADTRSIQNSQRMSNLLDTNWTGATSDYYKEMAMFQASQDIFKDLNSMSLFGGR
>NZ_CP048796.1|WP_163862340.1|2880375_2882016_-|flagellar-hook-associated-protein-FlgK
MLNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYFSHVRREFDEFINQQYGQSRARSGEYEAYAKNSSQVDDLLTNDIEDISSNIGSFFTALDAASSDASDKTLIDVFLGKSNALVGQFKEANRRLQDMERDVNRQIETKVRDINTYAEKIAGLNQQIARVRSVSGSEPNDLLDVRDRLVSEINSLVGVKVIEQNGNYNVTFANGLPLVTGEHANRLEAVPSSQDDSRFSIGFVGANGQAREIPDDAFRGGELSGVLRSRKEVIDPAYQKINKLALVFASKFNEIHQKGFDANGNTGKDFFEIGKGNVVSNTFNRGQADFDFHYSDVSQVTGNNYEMRFDGKNWDVTRLPEGTKVTVDASTADTLKFDGIALKISNNNAQSGDAFLVKPVNGVINGMQTLVSEAANFAAAGSKGSGPGDNENLKELVKLQDQKLVGGTSTFSDYYATIVNDVGNQTKQAQIDSETQNKMTESFYEQQQAISGVNMNEESIQMQKIQQFFNANAQVLKTVDDLFNALMRAF
>NZ_CP048796.1|WP_163862343.1|2882156_2883137_-|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MNDMQLMQGAAFDLQSLSSLKREIADSPDKGLRQVTQQLEATFVQMMLKSMRDALPQDGLFSSDQTRMLTSMYDQQIAQDLSNKGLGFGEMMYQQLKQTQGETSSPEEPIKPFSMESKLLDSLPNPAMAQIVRRFAPLGDALSSPMGKVKSLSLNSQNFISQLIEPAKAASQKSGISPLLVLAQAALESGWGRREILTAEGKASHNLFGIKAGKSWQGPVTNIMTTEVINGKSMKMRDNFRVYASYEEAIADYINLLTENPRYHSVKHAQSPEVAARRLHQAGYATDPNYSDKLIALINQIRSHHGVDKTASKAVQAYTVDLSDIF
>NZ_CP048796.1|WP_154622982.1|2883136_2884240_-|flagellar-basal-body-P-ring-protein-FlgI
MNKLVTLLLTLLCVFVAPVNGERIKDLTTVQGVRDNALIGYGLVVGLDGTGDQTMQTPFTTQSLSNMLSQMGITVPPGTNMQLKNVAAVMVTAKLPPFARSGQSLDVVVSSMGNAKSLRGGTLLMTPLKGVDGQIYAMAQGNILVGGAGASAGGSSIKVNQLAGGRITGGATIERELPTSFGQNGVINLQLNDDSFTLAQDISDAINRLRGAGTATPLDSRTVQLRVPMTNSEQVRFLAQVQELNVRTPIAEAKVILNSRTGSVVINRSVTLESCAVAHGSLSVMVDRQTQVSQPDTPFAGGQTVVTRNTNIGLREQGGALQKVNASVQLNQVIQALNTLGATPTDLMSILQAMESAGCLRAKLEII
>NZ_CP048796.1|WP_154622988.1|2884277_2885009_-|flagellar-basal-body-L-ring-protein-FlgH
MMKSGIVPQNKENSLFSPSKVLVLTLVFAISGCAYVKPRPLVDTQTSALPTAPTAPAPNGAIFQSAQPAYYGYQPLFEDRRPRNVGDILTINLQENVSASKNSSANANRSGKTGFLAAILPGFMQGWLGGSNTELDVKGSSDFTGKGGANANNTFKGTITVTVDQLLANGNLHVVGEKRIAINQGTESIRFSGVVNPRTIGADNNVSSTQVADARIEYVGDGYINESQTMGWLQRFFLNVSPY
>NZ_CP048796.1|WP_154622981.1|2885135_2885918_-|flagellar-basal-body-rod-protein-FlgG
MIRSLWIAKTGLDTQQTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNVRQPGAMSSEQTSLPSGLQLGTGSRPVATMRIHSQGALNKTGNTTDIAIKGQGFLHVQMPDGSDAYTRDGALQPNQDGQLVTSSGYQIVPAITIPDNANSLSIASDGTVSITVYGDNQPQQIGQITLTTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGLLYQHMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQMLQRLTQL
>NZ_CP048796.1|WP_154622980.1|2885937_2886693_-|flagellar-basal-body-rod-protein-FlgF
MDHVIYTAMGGARHALENQAIVSNNIANVSTSGFKAQLAAMRAVPINGDSEQTRTLVVASTPGADMSQGPLNYTGRPMDVSLNDKHFLAVELADGSEAYTRNGNIQISSEGELVIGEHRLQGDGGPINVPPNAELTIGEDGTVTALLATDPPTMLGQIGRLKIVEAQPQDLLRGEDGLFHLSPQAIAANGDVLAQSERASLTSGVIEGSNVNAAEAMVSMIANARYFEMQMKVVRSADENAQKANQLLAVS
>NZ_CP048796.1|WP_154622979.1|2886708_2887929_-|flagellar-hook-protein-FlgE
MSFSQAVSGLNAASAGLDTIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNFKDGPITRTDRPTDVAISGNGFFRVQNQNGDIFYSRDGQFTRDKSGNLVNNQGMIITGYPAGLDENGNIVVQSGGVPQGLNIPTDMMDARASDTAKLTINLNSEDKVKSKPFDVNNPDDTGSYNFSTTMSAFDSQGNTHEISVYFVKTDDNKWTAYGRDSGDKVAKKLGDLEFDGNGRLASPTNAVFAFDYNGLNGANDGTLQVDLNKTRQQKVSESSVSAIDVNGYPAGEYTNFKIEDNGLIVANYSNQQKRVVGQVALSAFANPSGLVSQGGNVWASSNASGNPMDGVPGVGQFGKLTSGALESSNVDMSQELINMIVMQRNYQSNAQTIKTQDQMLQTMVNLR
>NZ_CP048796.1|WP_154622978.1|2887959_2888793_-|flagellar-basal-body-rod-modification-protein
MGIAATMYDSLDNTTTGPEPLKSNIPTKSQTDDMRDTFLKMIVTQMQNQDPTKPMENTDLTSQLAQIATLESMNKLSDKVSGISSQIGSGQSLQATQLVGKGVLIPRNEIVLAPLKKQESGENSDISKPTNPLPDDELNRSLSVLNDSGDESEVSQDDYISSPFGFFLPKHADSVEITIRDKNRAVVRTISYETEVKPDIYDMSWDGRDNNGQLVADTKSKYFFDVKAIKNGAEIEVTKLGYTRVNGVTPGTDAPLLDVGIGQSVPLSSIFKVYPSS
>NZ_CP048796.1|WP_163862346.1|2888805_2889210_-|flagellar-basal-body-rod-protein-FlgC
MALLSIFDISASALTAQSQRLNVSASNMANAESVVGPDSEPFRAKQLVFQMSPQGRNEVGGVRVSQLIEDPTPPRMEYKPGHPLADEKGYVRMPNVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTLTIGQ

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Crispr_ID: NZ_CP048796_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048796_5

4058747-4058864

Orphan

Consensus_repeat	Method
AAAGGAGGTTATCCCAAGGAACATACATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048796_5

>merge|NZ_CP048796|5|4058747-4058864|CRISPRCasFinder
AAAGGAGGTTATCCCAAGGAACATACATTAAATATGTGACTTGGGTAACCGAGTGAAGCAAACGCACCTATCACGCGAAGAGTGACGAAAAAGGAGGTTATCCCAAGGAGCATACATT

>NZ_CP048796|5|5|4058747-4058864|CRISPRCasFinder
AAAGGAGGTTATCCCAAGGAACATACATT	AAATATGTGACTTGGGTAACCGAGTGAAGCAAACGCACCTATCACGCGAAGAGTGACGAA
AAAGGAGGTTATCCCAAGGAGCATACATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048796.1\|WP_154623518.1\|4060581_4061478_+\|HTH-type-transcriptional-activator-IlvY	unknown	unknown	gnl\|CDD\|236961
NZ_CP048796.1\|WP_163863298.1\|4068529_4070056_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP048796.1\|WP_163863289.1\|4056528_4058553_-\|DNA-helicase-Rep	unknown	unknown	gnl\|CDD\|182838
NZ_CP048796.1\|WP_154623520.1\|4064962_4065889_-\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|235841
NZ_CP048796.1\|WP_154624223.1\|4044830_4045898_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|236649
NZ_CP048796.1\|WP_004915426.1\|4070258_4070597_-\|DUF413-domain-containing-protein	unknown	unknown	gnl\|CDD\|236825
NZ_CP048796.1\|WP_096617953.1\|4053675_4054962_+\|ATP-dependent-RNA-helicase-RhlB	unknown	unknown	gnl\|CDD\|235314
NZ_CP048796.1\|WP_163863296.1\|4066167_4067814_-\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NZ_CP048796.1\|WP_096617951.1\|4053231_4053558_-\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|181812
NZ_CP048796.1\|WP_163863294.1\|4063046_4064897_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP048796.1\|WP_154624222.1\|4045894_4047157_-\|UDP-N-acetyl-D-mannosamine-dehydrogenase	unknown	unknown	gnl\|CDD\|182940
NZ_CP048796.1\|WP_154623515.1\|4054973_4056479_+\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236826
NZ_CP048796.1\|WP_071599630.1\|4067948_4068050_-\|ilv-operon-leader-peptide	unknown	unknown	gnl\|CDD\|170429
NZ_CP048796.1\|WP_163863291.1\|4061469_4063044_-\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NZ_CP048796.1\|WP_163863287.1\|4049472_4050561_-\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	unknown	unknown	gnl\|CDD\|237913
NZ_CP048796.1\|WP_154623521.1\|4065901_4066171_-\|acetolactate-synthase-2-small-subunit	unknown	unknown	gnl\|CDD\|236862
NZ_CP048796.1\|WP_163863285.1\|4048382_4049441_-\|ECA-polysaccharide-chain-length-modulation-protein	unknown	unknown	gnl\|CDD\|236943
NZ_CP048796.1\|WP_163863284.1\|4047153_4048284_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_CP048796.1\|WP_154623517.1\|4058928_4060404_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235368
NZ_CP048796.1\|WP_004915469.1\|4051291_4052551_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490

Protein	Function_ID	Function_description	E-value
NZ_CP048796.1\|WP_154623518.1\|4060581_4061478_+\|HTH-type-transcriptional-activator-IlvY	gnl\|CDD\|236961	PRK11716, PRK11716, HTH-type transcriptional activator IlvY.	0
NZ_CP048796.1\|WP_163863298.1\|4068529_4070056_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP048796.1\|WP_163863289.1\|4056528_4058553_-\|DNA-helicase-Rep	gnl\|CDD\|182838	PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.	0
NZ_CP048796.1\|WP_154623520.1\|4064962_4065889_-\|branched-chain-amino-acid-transaminase	gnl\|CDD\|235841	PRK06606, PRK06606, branched-chain amino acid transaminase.	0
NZ_CP048796.1\|WP_154624223.1\|4044830_4045898_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|236649	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.	0
NZ_CP048796.1\|WP_004915426.1\|4070258_4070597_-\|DUF413-domain-containing-protein	gnl\|CDD\|236825	PRK11027, PRK11027, hypothetical protein; Provisional.	2.60658e-70
NZ_CP048796.1\|WP_096617953.1\|4053675_4054962_+\|ATP-dependent-RNA-helicase-RhlB	gnl\|CDD\|235314	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.	0
NZ_CP048796.1\|WP_163863296.1\|4066167_4067814_-\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NZ_CP048796.1\|WP_096617951.1\|4053231_4053558_-\|thioredoxin-TrxA	gnl\|CDD\|181812	PRK09381, trxA, thioredoxin TrxA.	1.50643e-61
NZ_CP048796.1\|WP_163863294.1\|4063046_4064897_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP048796.1\|WP_154624222.1\|4045894_4047157_-\|UDP-N-acetyl-D-mannosamine-dehydrogenase	gnl\|CDD\|182940	PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional.	0
NZ_CP048796.1\|WP_154623515.1\|4054973_4056479_+\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	gnl\|CDD\|236826	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase.	0
NZ_CP048796.1\|WP_071599630.1\|4067948_4068050_-\|ilv-operon-leader-peptide	gnl\|CDD\|170429	PRK10424, PRK10424, ilv operon leader peptide.	2.33667e-05
NZ_CP048796.1\|WP_163863291.1\|4061469_4063044_-\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NZ_CP048796.1\|WP_163863287.1\|4049472_4050561_-\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	gnl\|CDD\|237913	PRK15119, PRK15119, UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase.	0
NZ_CP048796.1\|WP_154623521.1\|4065901_4066171_-\|acetolactate-synthase-2-small-subunit	gnl\|CDD\|236862	PRK11152, ilvM, acetolactate synthase 2 small subunit.	1.98937e-35
NZ_CP048796.1\|WP_163863285.1\|4048382_4049441_-\|ECA-polysaccharide-chain-length-modulation-protein	gnl\|CDD\|236943	PRK11638, PRK11638, ECA polysaccharide chain length modulation protein.	0
NZ_CP048796.1\|WP_163863284.1\|4047153_4048284_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP048796.1\|WP_154623517.1\|4058928_4060404_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235368	PRK05225, PRK05225, ketol-acid reductoisomerase; Validated.	0
NZ_CP048796.1\|WP_004915469.1\|4051291_4052551_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0

>NZ_CP048796.1|WP_163863289.1|4056528_4058553_-|DNA-helicase-Rep
MRLNPSQQQAVEFVDGPCLVLAGAGSGKTRVITNKIAHLIRHCGYQPRQIAAVTFTNKAAREMKERVAQTLGKKEARGLIISTFHTLGLEIIKREYKALGIKANFSLFDDQDQMALLKELTFDLLEEDKDLLQQLISSISNWKNDLLSPDQALARARSEKEHHFAECYRRYELHLRSCNVLDFDDLISKPTLLLSHNEEVRERWQQKIRYLLVDEYQDTNTSQYQLVKLLVGQRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPKLNVIKLEQNYRSSERILKAANILIANNPHVFEKQLFSTLGYGAPLKVITANNEDHEAERVIGELIAHHFINKTQYKDYAILYRGNHQSRIFEKMLMQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPEDDSAFLRIVNTPRREIGPKTIQKLGEWANQRGKSLYQASFDLGLEQTLTGKGLNALQQFAHWMDKIVKLAEREPLIAVRDLLREMDYESWLYETSASTKAAEMRMKNVNQLFTWMSEMVEGDDLNDPMSLDQVVTRFTLRDMMERGEDDEESDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSIDEDNIDEERRLAYVGITRAQKELFFSHCRERRQYGELIRPELSRFLLELPQDDLEWEQQRKVVTAEERMQKGQSALADIKARLGLNKKDK
>NZ_CP048796.1|WP_154623515.1|4054973_4056479_+|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase
MLKSSSLYAAIDLGSNSFHMLVVREVAGSIQIISRVKRKVRLAAGLDSQNRLSEQAMERGWQCLRLFSEHLQDIPSSQIRVVATATLRLAKNADIFVQKASEILGNTVKVIQGEEEARLIYQGVAHTTGGPDQRLVVDIGGGSTELVAGTGAKAEQLFSLEMGCVTWLEKYFSDRALTEENFAQAERAARAVIAPVAETLTRHGWKICVGASGTVQAIQEIMISQGMDELITLDKLQQLKYKAIQCHKLEELEIEGLTFERALVFPSGLSILIAIFETLSIDNMTLAGGALREGLVYGMLELPIEQDVRARTLRNIQRRFQVDIEQAARVSQLAEHFFLQVAKHWELDLRCRELLSSACALHEIGLSVDFRKGPEHASYLITNLDLPGFTPAQKRLLAALLRNQQGPVDLATLSQQNALPMQQAYYLCRLLRLAIIFASRRRDDTLPALRLQAESDTLTIVLPYRWLAEHPLRSENLQQEVQWQGYVNWPLKLEERNSSNS
>NZ_CP048796.1|WP_096617953.1|4053675_4054962_+|ATP-dependent-RNA-helicase-RhlB
MSKAHLTEKKFSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHYLLTHPAIEGKQANQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLKVLQRGVDILIGTTGRLIDYAKQGHVDLGAVQVVVLDEADRMYDLGFIKDIRWLFRRMPSVAERLNLLFSATLSYRVRELAFEQMSNPEYIEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWPERCIIFANTKHRCDEIWAHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIEDYIQHSIPVSKYNSEALLTDLPTPKRRHRPRPGGPRRNSNSPRRHNGPRNNHKRSG
>NZ_CP048796.1|WP_096617951.1|4053231_4053558_-|thioredoxin-TrxA
MSNKIIHITDASFETAVLKAGSPVLVDFWAAWCGPCKMIAPILDEVAEEYTGKLTIAKLNIDDNPATAPKYGIRGIPTLLLFKNGSVAATKVGALSKAQLKEFLDENL
>NZ_CP048796.1|WP_004915469.1|4051291_4052551_-|transcription-termination-factor-Rho
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQDELQKMWILRKIIHPMGEIDAMEFLISKLAMTKTNEEFFDFMKRA
>NZ_CP048796.1|WP_163863287.1|4049472_4050561_-|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase
MDTAQFIASLFYVFLFTLVFIFIARVVATKIGLVDKPNFRKKHVGLVPLVGGITVFFGICFAFVITEEYIPHKWLYLICAGLLVLIGALDDRFDISVKLRAGVQAIVAVVMMTVADLKLESLGYAFGPWELVLGPFGYIVTLFAVWAAINAFNMVDGIDGLLGGLSCVSFGALGFLLYQSGNYALAFWCFAFIAAILPYIFLNLGLLGRRFKVFMGDAGSTLIGFTIIWILVESTQETVHPLNPVTALWIIAIPLMDMVAIMYRRIRKGMSPFSPDRQHIHHLIMRSGFTPKGAFVLITLAAAFLACIGIIGERLTFIPEWVMLALFLLVFFMYGYCIKRAWKVARFIKRIRRRMRRGGAVR
>NZ_CP048796.1|WP_163863285.1|4048382_4049441_-|ECA-polysaccharide-chain-length-modulation-protein
MKNSETQPNQYQPPIEPELDIRGLCRSLWQGKILIVAFAVIFAAVALGASYFMQQKWSATAITDLPTVNNLGSYYSQQQFLRNLDSRINTTGQEGQLPTIANEAYQEFIKQVGSYDTRRQFWLTTDYYKQRLENDPKADAALLDELINNIEFTPADNLKNLTDNIKLIAETSTDANQLLRQYIQFANQRATANLNDEIKGTWATKMQSMKALVKREDMVAQSAYERRLNVLEQALKVAQKQGISRNQSTTPVDEIPDSKMFMLGVPLLEAQIETLKATGPDHDTDYDQNMAMLSTLSVGPTLQDRFQAYRYLRTPEDPVKRDSPRRAFMMVLWGAIGALVGAGVVLARRRPS
>NZ_CP048796.1|WP_163863284.1|4047153_4048284_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKVLTVFGTRPEAIKMAPLVHALANDAAFEAKVCVTAQHREMLDQVLKLFEITPDYDLNIMKPGQDLTDITCRILEGLKTVFADFQPDVVLVHGDTATTMATSLAAFYHRIPVGHVEAGLRTGNLYSPWPEEANRKIAGHLAMYHFAPTENSRQNLLKESIPDKHIFVTGNSVIDALLWVRDKVMSDQHMAEKLAANYPFIDPNKKMILVTGHRRESFGGGFERICHALAEIAQSHPDVQVVYPVHLNPNVSEPVKRILHGIDNIILITPQEYLPFVYLMNHAYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVDAGTVRLVGTDTQKIVAEVNRLLTDEAEYHAMSRAHNPYGDGHACQRILEALKSNQVKL
>NZ_CP048796.1|WP_154624222.1|4045894_4047157_-|UDP-N-acetyl-D-mannosamine-dehydrogenase
MSFETISVIGLGYIGLPTAAAFASRKKQVIGVDVNQHAVDTINRGKIHIVEPELDLVVKTAVEAGHLKAFTKPQPADAYLIAVPTPFKGEHEPDLTYVRAAAESIAPVLKKGDLVILESTSPVGTTEQMAEWMAQVRPDLTFPHQAGEDADIDMAYCPERVLPGQVMVELIKNDRVVGGMTPKSSLRASELYNIFLEGECVITNARTAEMCKLTENSFRDVNIAFANELSLICAEQDINVWELISLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQNPKQSRLIHTARLVNDGKPIWVVDQVKAAVADCLSETGKKASEVTIACFGLSFKPNIDDLRESPAMHITKMIANWNTGKTYAVEPHIEALPTSLKGIAELVSIETAVNEADIILMLVDHTVFKGIQGSAIPQKWVVDTKGVWR
>NZ_CP048796.1|WP_154624223.1|4044830_4045898_-|dTDP-glucose-4,6-dehydratase
MKRILITGGAGFIGSAVVRHIIENTRDSAIVVDCLTYAGNLESLSEVSNSDRYAFEQVNICDRIALDRVFAEYQPDAVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARHYWMGLDGNKKAQFRFHHISTDEVYGDLEGPDGFFTETTPYAPSSPYSASKASSDHLVRAWHRTYGLPTMITNCSNNYGPYHFPEKLIPLIILNALAGKPLPVYGKGEQIRDWLFVEDHARALHLVATTAQPGTTYNIGGHNERRNIDVVNTICELLEELHPQKPQGVAHYRDLITYVTDRPGHDMRYAIDADKIARELGWTPQETFESGIRKTVLWYLNNETWWRRVQDGSYAGERLGLGA
>NZ_CP048796.1|WP_154623517.1|4058928_4060404_-|ketol-acid-reductoisomerase
MANYFNTLNLRQQLEQLGKCRFMKREEFADEAGYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIAYALRAEAIAEKRASWRKATENGFKVGTYEELIPEADLVINLTPDKQHSTVVRAVQPMMKQGAALGYSHGFNIVEVGEEIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGALLSYDKMVADGVEPGYAGKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAFALSEQLKTIMAPLFQKHMDDIISGEFSATMMADWANDDKNLLAWREETGKTAFENYPEYTGKISEQEYFDHGVLLVAMVKAGVELAFDTMLEAGILEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNYLFSFAAVPMLKDFMSKLQAGDLAKPVADNGTDNAQLRDVNEAIRNHPIEKIGKTLRGYMTDMKKISSAQ
>NZ_CP048796.1|WP_154623518.1|4060581_4061478_+|HTH-type-transcriptional-activator-IlvY
MDIRDLKLFLHLAESCHFGRTSKAMYVSPSTLSRQIQRLEEQLGHPLFIRDNRSVKLTQAGEHLKQFAQQTLLQYQQLQHVLNQQSPSLTGELRLFCSVTAAYSHLPQVLDKFRALHPLVEIKLTTGDAADAVDKVETKEADLGIAGKPERLPDNVKFTKIGEIPLVLIAPALPCAVRTMATEPQPDWSAIPFILPEHGPSRKRIELWFRRHHINNPVIYATVSGHEAIVSMVALGCGIALIPSVVVDNSPEPVRSRILQLDNISLVEPFELGVCSLSKRLSEPLIKSFWQLLPESLI
>NZ_CP048796.1|WP_163863291.1|4061469_4063044_-|threonine-ammonia-lyase,-biosynthetic
MAAAKPLPSAPTSADYLKAALSAPVYEVAQVTPLQEMSKVSARMGNTILVKREDRQPVHSFKLRGAYAMIAGLTDEQKAKGVVTASAGNHAQGVALSASRVGVKAKIVMPVATADIKVDAVRNFGGEAILHGANFDEAKAKAIEMATQEGYTFVPPFDHPAVIAGQATIALELLQQDVHLDRIFIPVGGGGLIAGVAVLIKQLMPEIKIIGVEAEDAACLKAALEAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQQYVDDVITVDSDAICAALKDIFEDVRAIAEPSGALALAGLKKYVQQHNIKGERLAHILSGANMNFHGLRYVSERCEIGEQREALLAVTIPEQKGSFLRFCQLLGHRSITEFNYRYTDADPDRACIFVGVRLNGGESERIEIIQELQQNGYEVADLSDDEMAKLHVRYMIGGRPSKPLEERLYSFEFPESPGALLKFLETLGTYWNITLFHYRSHGTDYGRVLAAFELSGPEVRFDRHLDALGYEYHDETGNPSFRFFLAPQRLPQTLD
>NZ_CP048796.1|WP_163863294.1|4063046_4064897_-|dihydroxy-acid-dehydratase
MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGANPNVSDADSEQIERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKTLFINAGKRIVELTKRYYEQNDESALPRNIANKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEVDFTMADIDRLSRQVPHLCKVAPSTQKYHMEDVHRAGGVIGILGELSRAGLLQENVKNILGLTFKQTLEQYDVMLTKDESVKSMFLAGPAGIRTTQAFSQSCRWPSLDTDRENGCIRNIEHAYSLDGGLAVLAGNIAEDGCIVKTAGVDEGSLTFRGPAKVYESQDDAVEAILGGKVVEGDVVVIRYEGPKGGPGMQEMLYPTSYLKSMGLGKACALITDGRFSGGSSGLSIGHISPEAASGGLLALVQDGDIIDIDIPKRTIALDVSEDELNKRRDAELARGDKAYTPRDRQREVSFALRAYASLATSADKGAVRDKSKLGG
>NZ_CP048796.1|WP_154623520.1|4064962_4065889_-|branched-chain-amino-acid-transaminase
MTKKADYIWFNGEMTPWADAKVHVMSHALHYGTSVFEGVRCYDSHKGPVVFRHREHMQRLRDSAKIYRMPVSYSVDELMEACRATLRKNNLVSAYIRPLVFIGDVGMGVNPPDGYKTDVIMAAFPWGAYLGEEALDQGIDAMVSSWNRVAPNTIPTGAKAGGNYLSSLLVGSEARRHGYQEGIALDVHGYLSEGAGENIFEVKDGILFTPPFTSSALPGITRDAILTLAKDMGIEVREQTLSRESLYLADEVFMTGTAAEITPVRSVDGIQVGIGRCGPVTKKIQQAFFGLFDGSTEDKWGWLDPVNP
>NZ_CP048796.1|WP_154623521.1|4065901_4066171_-|acetolactate-synthase-2-small-subunit
MMQHQLAIQARFRPEVLERILRVTRHRGFQISSMTMDHMPDGDNVNIEMTVNSQRPLTQLYAQLTKLSDVSEVEIREQESRLLRTQSAM
>NZ_CP048796.1|WP_163863296.1|4066167_4067814_-|acetolactate-synthase-2-catalytic-subunit
MNGAQWLVQALRTQGVETVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAVIAAIGYARSTSKTGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSEFIGTDAFQEIDVLGLSLACTKHSFLVESLEDLPRIVAEAFAIANSGRPGPVLIDIPKDIQLQQADLAPFLMPVEQDLPIQTDEVQQARALLQQSQKPMLYIGGGVGMSGAVAELRHFIACTGIPSVATLKGLGAVAATEPYYLGMLGMHGTKAANLAVQRCDLLIAVGARFDDRVTGKLNTFAPDAKVIHIDIDHVELDKLRQTHVALLGDAKQLLPELTMEKNISSWQEEVQQLKHEFSWRYDHPGEAIYAPLLLKQLSDRMGPNTVVTTDVGQHQMWSAQHLEFDAPENFITSSGLGTMGFGIPAAVGAQVARPEDTVICVSGDGSFMMNVQELGTIKRKQLPVKILLLDNQRLGMVRQWQELFFEQRYSETILTDNPDFVALAQAFDIPGRRITAKSEVDAALDELLNSEGAYILQVSINELENVWPLVPPGASNEKMMEKPL
>NZ_CP048796.1|WP_071599630.1|4067948_4068050_-|ilv-operon-leader-peptide
MNAFFRVISLIIISVVVIIIPPCGAALGRRRLN
>NZ_CP048796.1|WP_163863298.1|4068529_4070056_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MALAIVYTRASIGMDAPLVTVEAHISNGLPGLTLVGLPETAVKESRDRVRSALINSGFEYPTKKMTINLAPADLPKEGGRYDLAIAIAILVSSGQVPAKILHQYEFLGELALSGQIRHVNGAIPAALAALTKKRQLILAAENPQQLNLLPDNSVMFAGTLLELCHFLYEKTALPRNFHPTNIPASLNCNDNISDIIGQEQGKRALEICASGGHNLLLLGPPGTGKTMLASRLKTLLPTLTPQEALEVASIHSLCQSTHLSYDWPPRPFRAPHHSASMAALIGGGSLPKPGEISLAHNGILFLDELPEFSRTVLDALREPLESRQIIISRAKAKVSFPANFQLIAALNPSPTGQYQGNFCRSSPTKILRYLSRISGPFLDRFDLSIEIPLLPLGTLSHPSSHSENSEQIRSRVLLARNIQMKRIGKLNSQLTEKETTALCQLNTKDAFFLEQALNKLGLSIRAWHKILRVARTIADLQNTDNIEKPHLLEALGYRAMDKLLLHLQKQVS
>NZ_CP048796.1|WP_004915426.1|4070258_4070597_-|DUF413-domain-containing-protein
MAESFITTNRFFDNKHYPRGFSRHGDFTIKEAQLLERHGQAFSELDSGKRAAQTDEEKLFVAVCRGEREPVTPEEKVWAKYSSRINRPKRFHTLSGGKPQIDPSDDYTDTDD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048796_1	1.3\|2741644\|32\|NZ_CP048796\|CRISPRCasFinder,CRT,PILER-CR	2741644-2741675	32	MW057859	Providencia phage PSTCR8lys, complete genome	5758-5789	0	1.0
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	40262-40287	4	0.846
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	91421-91446	4	0.846
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	MN856003	Bacteriophage sp. isolate 1, complete genome	32354-32379	4	0.846
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	204729-204754	4	0.846
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	KJ749827	Escherichia phage ECBP5, complete genome	5226-5251	4	0.846
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NZ_CP024788	Nostoc flagelliforme CCNUN1 plasmid pNFSY03, complete sequence	47585-47610	5	0.808
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NZ_CP024790	Nostoc flagelliforme CCNUN1 plasmid pNFSY05, complete sequence	149530-149555	5	0.808
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	270610-270635	5	0.808
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	JQ182729	Enterobacterial phage mEp390, complete genome	25465-25490	5	0.808
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	JF974339	Enterobacteria phage IME10, complete genome	2910-2935	5	0.808
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	139307-139332	5	0.808
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NC_016158	Escherichia phage HK639, complete genome	40405-40430	5	0.808
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NC_031077	Enterobacter phage Tyrion, complete genome	38148-38173	5	0.808
NZ_CP048796_2	2.2\|2750870\|26\|NZ_CP048796\|PILER-CR	2750870-2750895	26	NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	85391-85416	5	0.808
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	336345-336370	6	0.769
NZ_CP048796_2	2.1\|2750810\|26\|NZ_CP048796\|PILER-CR	2750810-2750835	26	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	773007-773032	6	0.769
NZ_CP048796_4	4.9\|2878678\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2878678-2878709	32	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	121337-121368	6	0.812
NZ_CP048796_4	4.9\|2878678\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2878678-2878709	32	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	52755-52786	6	0.812
NZ_CP048796_4	4.16\|2879098\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2879098-2879129	32	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	41957-41988	6	0.812
NZ_CP048796_1	1.2\|2741584\|32\|NZ_CP048796\|CRISPRCasFinder,CRT,PILER-CR	2741584-2741615	32	NZ_CP046705	Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence	131889-131920	7	0.781
NZ_CP048796_1	1.2\|2741584\|32\|NZ_CP048796\|CRISPRCasFinder,CRT,PILER-CR	2741584-2741615	32	NZ_CP026682	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM1, complete sequence	2175-2206	7	0.781
NZ_CP048796_1	1.2\|2741584\|32\|NZ_CP048796\|CRISPRCasFinder,CRT,PILER-CR	2741584-2741615	32	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	44326-44357	7	0.781
NZ_CP048796_1	1.4\|2741704\|32\|NZ_CP048796\|CRISPRCasFinder,CRT,PILER-CR	2741704-2741735	32	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	42664-42695	7	0.781
NZ_CP048796_1	1.4\|2741704\|32\|NZ_CP048796\|CRISPRCasFinder,CRT,PILER-CR	2741704-2741735	32	NC_007497	Burkholderia phage Bcep176, complete genome	42664-42695	7	0.781
NZ_CP048796_4	4.3\|2878318\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2878318-2878349	32	NZ_CP024791	Nostoc flagelliforme CCNUN1 plasmid pNFSY06, complete sequence	84696-84727	7	0.781
NZ_CP048796_4	4.5\|2878438\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2878438-2878469	32	MN693858	Marine virus AFVG_250M1106, complete genome	35465-35496	7	0.781
NZ_CP048796_4	4.15\|2879038\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2879038-2879069	32	NZ_CP011772	Croceicoccus naphthovorans strain PQ-2 plasmid p2, complete sequence	38554-38585	7	0.781
NZ_CP048796_1	1.3\|2741644\|32\|NZ_CP048796\|CRISPRCasFinder,CRT,PILER-CR	2741644-2741675	32	MN693045	Marine virus AFVG_25M135, complete genome	31070-31101	8	0.75
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	NZ_CP024788	Nostoc flagelliforme CCNUN1 plasmid pNFSY03, complete sequence	47581-47612	8	0.75
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	NC_047854	Cronobacter phage ESSI-2, complete genome	12717-12748	8	0.75
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	MN856003	Bacteriophage sp. isolate 1, complete genome	32350-32381	8	0.75
NZ_CP048796_4	4.16\|2879098\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2879098-2879129	32	NZ_CP047617	Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence	48668-48699	8	0.75
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP037431	Lactobacillus plantarum strain EM plasmid pEM2, complete sequence	27972-28003	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP037431	Lactobacillus plantarum strain EM plasmid pEM2, complete sequence	43203-43234	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NC_021233	Lactobacillus plantarum subsp. plantarum P-8 plasmid LBPp1, complete sequence	31453-31484	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP012296	Pediococcus damnosus strain TMW 2.1536 plasmid pL21536-2, complete sequence	31188-31219	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP053341	Lactobacillus paraplantarum strain CK401 plasmid pCK401D, complete sequence	36632-36663	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP021933	Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence	40561-40592	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP032758	Lactobacillus pentosus strain DSM 20314 plasmid unnamed1, complete sequence	43536-43567	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP014929	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-5, complete sequence	15597-15628	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP035028	Lactobacillus plantarum strain YW11 plasmid plsm_YW11_pC, complete sequence	4479-4510	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP035028	Lactobacillus plantarum strain YW11 plasmid plsm_YW11_pC, complete sequence	49896-49927	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP035023	Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pC	4479-4510	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP035023	Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pC	49897-49928	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP018212	Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_3, complete sequence	5398-5429	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP023773	Lactobacillus plantarum strain PC520 plasmid p1, complete sequence	51622-51653	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP032461	Lactobacillus plantarum strain ATG-K2 plasmid pK2-1, complete sequence	11250-11281	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP032461	Lactobacillus plantarum strain ATG-K2 plasmid pK2-1, complete sequence	52864-52895	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP032660	Lactobacillus pentosus strain ZFM94 plasmid unnamed1, complete sequence	53575-53606	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP035145	Lactobacillus plantarum strain SRCM103357 plasmid unnamed2	44051-44082	9	0.719
NZ_CP048796_1	1.1\|2741524\|32\|NZ_CP048796\|CRISPRCasFinder,CRT	2741524-2741555	32	NZ_CP032655	Lactobacillus pentosus strain ZFM222 plasmid unnamed1, complete sequence	58173-58204	9	0.719
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	40258-40289	9	0.719
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	204727-204758	9	0.719
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	222207-222238	9	0.719
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	91417-91448	9	0.719
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	JQ182729	Enterobacterial phage mEp390, complete genome	25461-25492	9	0.719
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	NC_016158	Escherichia phage HK639, complete genome	40403-40434	9	0.719
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	KJ749827	Escherichia phage ECBP5, complete genome	5224-5255	9	0.719
NZ_CP048796_4	4.13\|2878918\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2878918-2878949	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	29904-29935	9	0.719
NZ_CP048796_4	4.16\|2879098\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2879098-2879129	32	MN694411	Marine virus AFVG_250M1188, complete genome	36167-36198	9	0.719
NZ_CP048796_4	4.16\|2879098\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2879098-2879129	32	MN693004	Marine virus AFVG_117M22, complete genome	36136-36167	9	0.719
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	NC_031077	Enterobacter phage Tyrion, complete genome	38146-38177	10	0.688
NZ_CP048796_2	2.3\|2750805\|32\|NZ_CP048796\|CRISPRCasFinder	2750805-2750836	32	JF974339	Enterobacteria phage IME10, complete genome	2906-2937	10	0.688
NZ_CP048796_4	4.1\|2878198\|32\|NZ_CP048796\|PILER-CR,CRISPRCasFinder,CRT	2878198-2878229	32	LR134127	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 7	194476-194507	10	0.688
NZ_CP048796_2	2.4\|2750865\|32\|NZ_CP048796\|CRISPRCasFinder	2750865-2750896	32	NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	85387-85418	11	0.656

1. spacer 1.3|2741644|32|NZ_CP048796|CRISPRCasFinder,CRT,PILER-CR matches to MW057859 (Providencia phage PSTCR8lys, complete genome) position: , mismatch: 0, identity: 1.0

ttaattattgtcagtggtcttatatattgtgt	CRISPR spacer
ttaattattgtcagtggtcttatatattgtgt	Protospacer
********************************

2. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 4, identity: 0.846

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gatgcggcgaatgcggcgctgaactc	Protospacer
* ************** ** *****

3. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 4, identity: 0.846

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gatgcggcgaatgcggcgctgaactc	Protospacer
* ************** ** *****

4. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 4, identity: 0.846

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gctgcggagaatgcggggctgaagtc	Protospacer
******* *********** *** *

5. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 4, identity: 0.846

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gatgcggcgaatgcggcgctgaactc	Protospacer
* ************** ** *****

6. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to KJ749827 (Escherichia phage ECBP5, complete genome) position: , mismatch: 4, identity: 0.846

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gctgcggagaatgcggggctgaagag	Protospacer
******* *********** ***  *

7. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NZ_CP024788 (Nostoc flagelliforme CCNUN1 plasmid pNFSY03, complete sequence) position: , mismatch: 5, identity: 0.808

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gttgcggcgaattcggggcagaatcc	Protospacer
*.********** **********..

8. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NZ_CP024790 (Nostoc flagelliforme CCNUN1 plasmid pNFSY05, complete sequence) position: , mismatch: 5, identity: 0.808

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gttgcggcgaattcggggcagaatcc	Protospacer
*.********** **********..

9. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 5, identity: 0.808

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gttgcggcgaattcggggcagaatcc	Protospacer
*.********** **********..

10. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 5, identity: 0.808

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gctgcggagaatgcggggctgaagac	Protospacer
******* *********** ***

11. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 5, identity: 0.808

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gctgcggagaatgcggggctgaagga	Protospacer
******* *********** ***  .

12. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 5, identity: 0.808

gctgcggcgaatgcggggcagaactg	CRISPR spacer
ggcgcggcgaatgcggggcagatcgc	Protospacer
* .******************* *

13. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NC_016158 (Escherichia phage HK639, complete genome) position: , mismatch: 5, identity: 0.808

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gctgcggagaatgcggggctgaaggc	Protospacer
******* *********** ***

14. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NC_031077 (Enterobacter phage Tyrion, complete genome) position: , mismatch: 5, identity: 0.808

gctgcggcgaatgcggggcagaactg	CRISPR spacer
gctgcggagaatgcggggctgaatga	Protospacer
******* *********** ***. .

15. spacer 2.2|2750870|26|NZ_CP048796|PILER-CR matches to NZ_CP053022 (Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence) position: , mismatch: 5, identity: 0.808

tgtcgtagtcaggctcaatgccaaac	CRISPR spacer
gctcctcgtcaggctcaatgccaaaa	Protospacer
  ** * ******************

16. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.769

gctgcggcgaatgcggggcagaactg	CRISPR spacer
actgcggcgaatgcgcggcagaggat	Protospacer
.************** ******.

17. spacer 2.1|2750810|26|NZ_CP048796|PILER-CR matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 6, identity: 0.769

gctgcggcgaatgcggggcagaactg	CRISPR spacer
attgcggcgaattcggggcagaatcc	Protospacer
..********** **********..

18. spacer 4.9|2878678|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 6, identity: 0.812

ttatcact-acaccggtcgtgctggatgataaa	CRISPR spacer
-cgtcactcgcacctgtcatgctggatgataaa	Protospacer
 ..***** .**** ***.**************

19. spacer 4.9|2878678|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 6, identity: 0.812

ttatcact-acaccggtcgtgctggatgataaa	CRISPR spacer
-cgtcactcgcacctgtcatgctggatgataaa	Protospacer
 ..***** .**** ***.**************

20. spacer 4.16|2879098|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 6, identity: 0.812

tatcttttgtaactgatacaatatttcctacc	CRISPR spacer
tatcttttttaactgatacaatgttcattaca	Protospacer
******** *************.**. .***

21. spacer 1.2|2741584|32|NZ_CP048796|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 7, identity: 0.781

taaacaagtattacttgagcatcgtagtgata	CRISPR spacer
tagtcaagtattacttgagcttcgtagcagaa	Protospacer
**. **************** ******... *

22. spacer 1.2|2741584|32|NZ_CP048796|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026682 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM1, complete sequence) position: , mismatch: 7, identity: 0.781

taaacaagtattacttgagcatcgtagtgata	CRISPR spacer
tagtcaagtattacttgagcttcgtagcagaa	Protospacer
**. **************** ******... *

23. spacer 1.2|2741584|32|NZ_CP048796|CRISPRCasFinder,CRT,PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 7, identity: 0.781

taaacaagtattacttgagcatcgtagtgata	CRISPR spacer
tagtcaagtattacttgagcttcgtagcagaa	Protospacer
**. **************** ******... *

24. spacer 1.4|2741704|32|NZ_CP048796|CRISPRCasFinder,CRT,PILER-CR matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.781

-gatagatcagagcgtcatgagcgagtctgcgt	CRISPR spacer
gggcggatt-gagcgccatgagcgagactgcgt	Protospacer
 *...***. *****.********** ******

25. spacer 1.4|2741704|32|NZ_CP048796|CRISPRCasFinder,CRT,PILER-CR matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.781

-gatagatcagagcgtcatgagcgagtctgcgt	CRISPR spacer
gggcggatt-gagcgccatgagcgagactgcgt	Protospacer
 *...***. *****.********** ******

26. spacer 4.3|2878318|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024791 (Nostoc flagelliforme CCNUN1 plasmid pNFSY06, complete sequence) position: , mismatch: 7, identity: 0.781

cagggaaat-----ttccctcagtcgcattattcaaa	CRISPR spacer
-----agatccagattccctcagacgcattattcaaa	Protospacer
     *.**     ********* *************

27. spacer 4.5|2878438|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to MN693858 (Marine virus AFVG_250M1106, complete genome) position: , mismatch: 7, identity: 0.781

ttgtttcaccgtttttgatatattcacctata	CRISPR spacer
aagttaacccgtttttgatatcttcagctata	Protospacer
  ***   ************* **** *****

28. spacer 4.15|2879038|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011772 (Croceicoccus naphthovorans strain PQ-2 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ccaaaacgc-----cagctccggtgtcccattcgcgg	CRISPR spacer
-----acgttcatgcagccccggtgtcccattcgcgg	Protospacer
     ***.     ****.******************

29. spacer 1.3|2741644|32|NZ_CP048796|CRISPRCasFinder,CRT,PILER-CR matches to MN693045 (Marine virus AFVG_25M135, complete genome) position: , mismatch: 8, identity: 0.75

ttaattattgtcagtggtcttatatattgtgt	CRISPR spacer
ttagttattgttagtggtcttattttgttcat	Protospacer
***.*******.*********** *  * ..*

30. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to NZ_CP024788 (Nostoc flagelliforme CCNUN1 plasmid pNFSY03, complete sequence) position: , mismatch: 8, identity: 0.75

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
aagttgcggcgaattcggggcagaatccgggt	Protospacer
 **.********** **********.. *  *

31. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to NC_047854 (Cronobacter phage ESSI-2, complete genome) position: , mismatch: 8, identity: 0.75

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
cggcgcaggcgaacgcgggccagaactggtgg	Protospacer
*.**   ******.***** **********

32. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 8, identity: 0.75

cagctgcggcgaatgcggggcagaactggttt---	CRISPR spacer
tggctgcggagaatgcggggctgaa---gtctgcg	Protospacer
..******* *********** ***   **.*

33. spacer 4.16|2879098|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047617 (Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence) position: , mismatch: 8, identity: 0.75

tatcttttgtaactgatacaatatttcctacc	CRISPR spacer
taaaatatgtaactcatccaatatttcctatg	Protospacer
**   * ******* ** ************.

34. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP037431 (Lactobacillus plantarum strain EM plasmid pEM2, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

35. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP037431 (Lactobacillus plantarum strain EM plasmid pEM2, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

36. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NC_021233 (Lactobacillus plantarum subsp. plantarum P-8 plasmid LBPp1, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

37. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP012296 (Pediococcus damnosus strain TMW 2.1536 plasmid pL21536-2, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

38. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP053341 (Lactobacillus paraplantarum strain CK401 plasmid pCK401D, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

39. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP021933 (Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

40. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP032758 (Lactobacillus pentosus strain DSM 20314 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

41. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP014929 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-5, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

42. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP035028 (Lactobacillus plantarum strain YW11 plasmid plsm_YW11_pC, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

43. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP035028 (Lactobacillus plantarum strain YW11 plasmid plsm_YW11_pC, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

44. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP035023 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pC) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

45. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP035023 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pC) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

46. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP018212 (Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_3, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

47. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP023773 (Lactobacillus plantarum strain PC520 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

48. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP032461 (Lactobacillus plantarum strain ATG-K2 plasmid pK2-1, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

49. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP032461 (Lactobacillus plantarum strain ATG-K2 plasmid pK2-1, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

50. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP032660 (Lactobacillus pentosus strain ZFM94 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

51. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP035145 (Lactobacillus plantarum strain SRCM103357 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

52. spacer 1.1|2741524|32|NZ_CP048796|CRISPRCasFinder,CRT matches to NZ_CP032655 (Lactobacillus pentosus strain ZFM222 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acactattgttttcccttggcgtaaacattca	CRISPR spacer
ttaagttcgttttcccttgacgtaaaaattct	Protospacer
 .*   *.***********.****** ****

53. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
tggatgcggcgaatgcggcgctgaactccatc	Protospacer
..* ************** ** *****   *.

54. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
tggatgcggcgaatgcggcgctgaactccatc	Protospacer
..* ************** ** *****   *.

55. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
cagcggcggcgaatgccgggcagcatgcccat	Protospacer
**** *********** ****** *.   . *

56. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 9, identity: 0.719

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
tggatgcggcgaatgcggcgctgaactccatc	Protospacer
..* ************** ** *****   *.

57. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 9, identity: 0.719

cagctgcggcgaatgcggggcagaactggttt--	CRISPR spacer
tggctgcggagaatgcggggctgaa--gactcag	Protospacer
..******* *********** ***  *..*.

58. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to NC_016158 (Escherichia phage HK639, complete genome) position: , mismatch: 9, identity: 0.719

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
tggctgcggagaatgcggggctgaaggcggtg	Protospacer
..******* *********** ***   * *

59. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to KJ749827 (Escherichia phage ECBP5, complete genome) position: , mismatch: 9, identity: 0.719

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
tggctgcggagaatgcggggctgaagagtata	Protospacer
..******* *********** ***  *  *

60. spacer 4.13|2878918|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719

tgacaatgcttgttaatcctattatatttata	CRISPR spacer
caaggatgcttgtcagtcctattatattagtg	Protospacer
..* .********.*.************ .*.

61. spacer 4.16|2879098|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to MN694411 (Marine virus AFVG_250M1188, complete genome) position: , mismatch: 9, identity: 0.719

tatcttttgtaactgatacaatatttcctacc	CRISPR spacer
tttctcttgtaactgatacaattttatttgtt	Protospacer
* ***.**************** ** ..*...

62. spacer 4.16|2879098|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to MN693004 (Marine virus AFVG_117M22, complete genome) position: , mismatch: 9, identity: 0.719

tatcttttgtaactgatacaatatttcctacc	CRISPR spacer
tttctcttgtaactgatacaattttatttgtt	Protospacer
* ***.**************** ** ..*...

63. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to NC_031077 (Enterobacter phage Tyrion, complete genome) position: , mismatch: 10, identity: 0.688

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
ttgctgcggagaatgcggggctgaatgagaaa	Protospacer
. ******* *********** ***. .*

64. spacer 2.3|2750805|32|NZ_CP048796|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 10, identity: 0.688

cagctgcggcgaatgcggggcagaactggttt	CRISPR spacer
tggctgcggagaatgcggggctgaaggattac	Protospacer
..******* *********** ***  . * .

65. spacer 4.1|2878198|32|NZ_CP048796|PILER-CR,CRISPRCasFinder,CRT matches to LR134127 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 7) position: , mismatch: 10, identity: 0.688

cttctgtctgctcagttactcttgcatcgatc	CRISPR spacer
taagcgtctgctcggttactcttccatctcac	Protospacer
.   .********.********* ****   *

66. spacer 2.4|2750865|32|NZ_CP048796|CRISPRCasFinder matches to NZ_CP053022 (Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence) position: , mismatch: 11, identity: 0.656

cttgtcgtagtcaggctcaatgccaaacgtta	CRISPR spacer
aagctcctcgtcaggctcaatgccaaaatgcg	Protospacer
    ** * ******************   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1472922 : 1524732

Escherichia_phage(18.6%)

terminase,tail,integrase,lysis,holin

attL 1472861:1472878|attR 1525423:1525440

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1472861:1472878	attL	NA	NA	NA	NA
WP_163860917.1\|1472922_1473969_-\|integrase	tyrosine-type recombinase/integrase	G8C7S0	Escherichia_phage	1.2e-57	36.5
WP_163860918.1\|1474390_1474597_-	DUF4060 family protein	NA	NA	NA	NA
WP_163860919.1\|1474613_1474805_-	hypothetical protein	NA	NA	NA	NA
WP_163860920.1\|1474826_1475078_-	hypothetical protein	NA	NA	NA	NA
WP_163860921.1\|1475080_1475404_-	DUF2591 family protein	A0A1P8DTH6	Proteus_phage	2.5e-11	44.9
WP_163860922.1\|1475396_1475633_-	hypothetical protein	NA	NA	NA	NA
WP_163860923.1\|1475839_1476541_-	hypothetical protein	NA	NA	NA	NA
WP_167520913.1\|1476661_1476823_-	hypothetical protein	C8XUQ9	Shigella_phage	2.7e-14	70.2
WP_163860924.1\|1476863_1477217_-	hypothetical protein	NA	NA	NA	NA
WP_163860925.1\|1477255_1477711_-	single-stranded DNA-binding protein	D5LH30	Escherichia_phage	4.6e-43	56.7
WP_163860926.1\|1477704_1478400_-	YqaJ viral recombinase family protein	A0A2R2Z325	Escherichia_phage	1.5e-74	57.6
WP_163860927.1\|1478396_1479281_-	recombinase RecT	A0A2L1IV84	Escherichia_phage	4.1e-96	62.2
WP_163860928.1\|1479277_1479484_-	hypothetical protein	NA	NA	NA	NA
WP_163860929.1\|1479480_1479954_-	class I SAM-dependent methyltransferase	A0A1W6JP48	Morganella_phage	1.1e-66	74.8
WP_163860930.1\|1480154_1480304_-	hypothetical protein	NA	NA	NA	NA
WP_167520914.1\|1480368_1480533_-	hypothetical protein	A0A1W6JP47	Morganella_phage	3.0e-13	57.4
WP_163860435.1\|1480626_1480875_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	1.5e-11	44.1
WP_163860436.1\|1480876_1481107_-	hypothetical protein	A0A2H4JA69	uncultured_Caudovirales_phage	4.5e-07	50.7
WP_163860931.1\|1481096_1481327_-	hypothetical protein	NA	NA	NA	NA
WP_163860932.1\|1481356_1481557_-	hypothetical protein	NA	NA	NA	NA
WP_163860933.1\|1481849_1482296_+	hypothetical protein	NA	NA	NA	NA
WP_060554528.1\|1482841_1483330_-	hypothetical protein	NA	NA	NA	NA
WP_163860934.1\|1483326_1483587_-	hypothetical protein	NA	NA	NA	NA
WP_163860935.1\|1483721_1484414_-	helix-turn-helix transcriptional regulator	G8C7L8	Escherichia_phage	6.3e-44	51.4
WP_071548404.1\|1484522_1484750_+	Cro/Cl family transcriptional regulator	K7PHA1	Enterobacteria_phage	7.6e-23	69.3
WP_163860936.1\|1484929_1485310_+	hypothetical protein	NA	NA	NA	NA
WP_163860937.1\|1485401_1485581_+	hypothetical protein	NA	NA	NA	NA
WP_163860938.1\|1485573_1486434_+	replication protein	K7PL20	Enterobacteria_phage	2.2e-86	59.3
WP_163860939.1\|1486548_1488435_+	AAA family ATPase	I6S1U6	Salmonella_phage	5.7e-273	69.6
WP_163860940.1\|1488460_1488709_+	hypothetical protein	NA	NA	NA	NA
WP_163860941.1\|1488724_1488931_+	hypothetical protein	NA	NA	NA	NA
WP_163860942.1\|1489108_1489315_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_163860943.1\|1489311_1489776_+	DUF2591 family protein	NA	NA	NA	NA
WP_163860944.1\|1489778_1490099_+	DUF2591 family protein	A0A2H4J8F6	uncultured_Caudovirales_phage	4.1e-06	35.4
WP_163860945.1\|1490266_1490710_+	recombination protein NinB	A0A1W6JNZ4	Morganella_phage	5.8e-43	61.7
WP_163860946.1\|1491007_1491391_+	hypothetical protein	NA	NA	NA	NA
WP_163860947.1\|1491387_1491600_+	hypothetical protein	NA	NA	NA	NA
WP_163860948.1\|1491596_1491881_+	DUF1364 domain-containing protein	K7P7Q1	Enterobacteria_phage	2.3e-32	73.4
WP_163860949.1\|1491877_1492243_+	RusA family crossover junction endodeoxyribonuclease	A0A2H4J472	uncultured_Caudovirales_phage	1.5e-33	59.2
WP_163863507.1\|1492232_1492421_+	NinH	NA	NA	NA	NA
WP_163860950.1\|1492420_1493260_+	antitermination protein	H6WRZ1	Salmonella_phage	1.3e-51	42.9
WP_036979452.1\|1493604_1493910_+\|holin	holin	F1C5D1	Cronobacter_phage	1.3e-14	43.9
WP_163860951.1\|1493902_1494295_+	M15 family metallopeptidase	E7C9S9	Salmonella_phage	1.5e-55	83.7
WP_163860952.1\|1494291_1494741_+\|lysis	lysis protein	NA	NA	NA	NA
WP_163860953.1\|1495431_1495857_+	hypothetical protein	NA	NA	NA	NA
WP_163860954.1\|1495979_1496468_+	hypothetical protein	NA	NA	NA	NA
WP_163860955.1\|1496837_1497440_+	hypothetical protein	A0A077KBY7	Edwardsiella_phage	2.5e-65	69.6
WP_163860956.1\|1497442_1498930_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	1.6e-262	87.8
WP_163860957.1\|1498929_1500300_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	2.5e-121	49.4
WP_163860958.1\|1500296_1501418_+	hypothetical protein	I6PD76	Cronobacter_phage	4.8e-102	50.1
WP_163860959.1\|1501529_1502294_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	3.2e-65	57.6
WP_163860960.1\|1502307_1503261_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	3.4e-125	70.9
WP_163863509.1\|1503263_1503551_+	hypothetical protein	NA	NA	NA	NA
WP_163860961.1\|1503598_1504081_+	hypothetical protein	G8C7P9	Escherichia_phage	4.9e-35	50.3
WP_154623727.1\|1504083_1504437_+	hypothetical protein	I6PD77	Cronobacter_phage	1.9e-20	44.7
WP_163860962.1\|1504438_1505020_+	hypothetical protein	G8C7Q1	Escherichia_phage	8.4e-50	54.9
WP_163860963.1\|1505016_1505418_+	hypothetical protein	NA	NA	NA	NA
WP_163860964.1\|1505467_1506127_+\|tail	phage tail protein	G8C7Q3	Escherichia_phage	5.6e-42	41.8
WP_163863511.1\|1506102_1506390_+	hypothetical protein	K7PKX6	Enterobacterial_phage	8.2e-06	50.0
WP_163860965.1\|1506382_1506697_+	hypothetical protein	NA	NA	NA	NA
WP_163860966.1\|1506747_1506984_+	DUF1799 domain-containing protein	K7PMK8	Enterobacteria_phage	7.7e-10	40.3
WP_163863513.1\|1507008_1507095_+	hypothetical protein	NA	NA	NA	NA
WP_163860967.1\|1507170_1507584_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.2e-50	72.5
WP_163860968.1\|1507583_1508846_+	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	1.9e-195	80.5
WP_163863515.1\|1509016_1510018_+	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	2.0e-30	29.0
WP_163860969.1\|1510123_1510438_-	hypothetical protein	NA	NA	NA	NA
WP_163860970.1\|1510673_1511156_+	hypothetical protein	NA	NA	NA	NA
WP_163860971.1\|1511298_1511757_+	hypothetical protein	NA	NA	NA	NA
WP_163860972.1\|1511819_1515314_+\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	2.4e-144	38.2
WP_163860437.1\|1515325_1515526_+	hypothetical protein	NA	NA	NA	NA
WP_163860973.1\|1515508_1515787_-	hypothetical protein	NA	NA	NA	NA
WP_163860974.1\|1515959_1516304_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	8.8e-23	45.5
WP_163860975.1\|1516300_1517038_+\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	2.1e-82	56.2
WP_163860976.1\|1517034_1517745_+	peptidase P60	F1C573	Cronobacter_phage	1.8e-86	66.4
WP_163860977.1\|1517741_1518347_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	5.5e-52	58.5
WP_163860978.1\|1518403_1523131_+	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	1.0e-20	44.4
WP_163860979.1\|1523196_1524732_+	hypothetical protein	A0A1W6JNW0	Morganella_phage	1.4e-40	29.8
1525423:1525440	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1605280 : 1616793

Bacteriophage(11.11%)

lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163861011.1\|1605280_1605982_-	hypothetical protein	Q3LZP9	Bacteriophage	1.6e-23	37.9
WP_154621888.1\|1606271_1606667_+	hypothetical protein	NA	NA	NA	NA
WP_163861012.1\|1606696_1606933_-	hypothetical protein	NA	NA	NA	NA
WP_154621886.1\|1607417_1608041_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	1.8e-34	43.0
WP_154621885.1\|1608156_1608369_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_163861013.1\|1608372_1610610_+	ATPase	Q9T1U5	Acyrthosiphon_pisum_secondary_endosymbiont_phage	1.2e-311	69.3
WP_163861014.1\|1610911_1611343_+	antitermination protein Q	K7PGW2	Enterobacterial_phage	5.0e-15	38.0
WP_154621882.1\|1611971_1612241_+	hypothetical protein	A0A2H4FNF0	Salmonella_phage	2.5e-25	65.6
WP_163861015.1\|1612240_1612711_+	glycoside hydrolase family protein	A0A1W6JNW4	Morganella_phage	5.4e-47	57.2
WP_167520916.1\|1612692_1612866_+	hypothetical protein	NA	NA	NA	NA
WP_154621880.1\|1612886_1613336_+\|lysis	lysis protein	NA	NA	NA	NA
WP_154621879.1\|1613808_1614324_+	hypothetical protein	NA	NA	NA	NA
WP_163861016.1\|1614334_1615822_+	DUF3383 family protein	A0A088C3U1	Shewanella_sp._phage	3.2e-77	36.5
WP_154621877.1\|1615831_1616284_+	hypothetical protein	I7ATP4	Escherichia_phage	2.3e-23	38.9
WP_154621876.1\|1616334_1616793_+	hypothetical protein	Q6IWV4	Burkholderia_phage	4.0e-23	47.0

DBSCAN-SWA_3

1913803 : 1948928

Enterobacteria_phage(28.57%)

protease,terminase,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163861178.1\|1913803_1914979_-	recombinase	A0A2H4J1K3	uncultured_Caudovirales_phage	2.3e-30	30.3
WP_163861181.1\|1914978_1915194_-	hypothetical protein	NA	NA	NA	NA
WP_163861184.1\|1915223_1915796_-	3'-5' exoribonuclease	A0A1W6JP74	Morganella_phage	1.6e-53	58.4
WP_163861186.1\|1915807_1916605_-	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	8.0e-67	47.9
WP_163861189.1\|1916607_1917213_-	hypothetical protein	M1F3E2	Salmonella_phage	2.4e-39	47.4
WP_163861192.1\|1917224_1918010_-	hypothetical protein	A0A0U4IID7	Pseudomonas_phage	1.2e-11	23.0
WP_163863563.1\|1918094_1918997_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	3.3e-85	54.0
WP_163861195.1\|1919094_1919280_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	8.4e-12	68.6
WP_163861198.1\|1919389_1919614_+	hypothetical protein	NA	NA	NA	NA
WP_163861201.1\|1919753_1919963_-	hypothetical protein	NA	NA	NA	NA
WP_163861204.1\|1920103_1920793_-	helix-turn-helix domain-containing protein	S5FUZ3	Shigella_phage	1.8e-67	56.1
WP_163861206.1\|1920891_1921140_+	helix-turn-helix domain-containing protein	A0A1C9IHV8	Salmonella_phage	2.3e-09	47.1
WP_163861209.1\|1921142_1921598_+	hypothetical protein	K7PJS5	Enterobacterial_phage	2.4e-31	46.7
WP_163860439.1\|1921659_1921869_+	hypothetical protein	NA	NA	NA	NA
WP_163861212.1\|1921858_1922038_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.8e-09	51.0
WP_163861215.1\|1922046_1923096_+	GntR family transcriptional regulator	U5P0A0	Shigella_phage	3.5e-62	47.8
WP_080739799.1\|1923092_1923341_+	hypothetical protein	A0A1W6JP32	Morganella_phage	5.8e-08	37.0
WP_163861223.1\|1923340_1923985_+	phage N-6-adenine-methyltransferase	K7PGU4	Enterobacteria_phage	4.3e-87	69.4
WP_163861227.1\|1923981_1924491_+	hypothetical protein	NA	NA	NA	NA
WP_036940668.1\|1924487_1924691_+	hypothetical protein	NA	NA	NA	NA
WP_163861240.1\|1924683_1925070_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.0e-24	47.5
WP_163861243.1\|1925156_1925963_+	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	6.8e-90	62.7
WP_163861246.1\|1925959_1926928_+	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	2.3e-60	38.3
WP_163861249.1\|1926958_1927615_+	hypothetical protein	A0A1W6JP37	Morganella_phage	3.0e-43	44.4
WP_163861251.1\|1928232_1929030_-	hypothetical protein	NA	NA	NA	NA
WP_163861255.1\|1929207_1929528_+	negative regulator GrlR	NA	NA	NA	NA
WP_140181293.1\|1929836_1930250_+	hypothetical protein	NA	NA	NA	NA
WP_163861258.1\|1930615_1931044_+	structural protein	A0A0A1IX72	Pseudomonas_phage	4.8e-26	49.6
WP_163863565.1\|1931052_1931421_+	hypothetical protein	A0A1W6JP00	Morganella_phage	8.3e-19	49.0
WP_163861261.1\|1931623_1931881_+	hypothetical protein	NA	NA	NA	NA
WP_163860440.1\|1932061_1932757_+	hypothetical protein	NA	NA	NA	NA
WP_163861264.1\|1932761_1933010_+	hypothetical protein	NA	NA	NA	NA
WP_163861267.1\|1933271_1933775_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	2.8e-41	56.2
WP_163861270.1\|1933771_1935886_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	1.0e-278	68.4
WP_163861273.1\|1935882_1936098_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.0e-13	55.7
WP_163861276.1\|1936094_1937600_+\|portal	phage portal protein	S5MW34	Escherichia_phage	2.6e-191	65.3
WP_163863567.1\|1937592_1939587_+\|protease	Clp protease ClpP	Q8VNN5	Enterobacteria_phage	1.9e-242	62.5
WP_163861279.1\|1939669_1940020_+	DUF2190 family protein	S5MQJ5	Escherichia_phage	3.8e-13	43.5
WP_163861281.1\|1940023_1940329_+	ATP-binding protein	Q8VNN4	Enterobacteria_phage	1.4e-11	42.5
WP_163863570.1\|1940303_1940855_+\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	7.0e-30	40.7
WP_163861284.1\|1940854_1941253_+\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	9.6e-29	43.5
WP_163861286.1\|1941262_1941775_+\|tail	phage tail protein	O64327	Escherichia_phage	6.9e-56	61.2
WP_163861288.1\|1941842_1942217_+	hypothetical protein	A5LH36	Enterobacteria_phage	4.5e-12	34.4
WP_163861292.1\|1942529_1945514_+\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	8.3e-101	39.2
WP_163861295.1\|1945562_1945892_+\|tail	phage tail protein	NA	NA	NA	NA
WP_163861299.1\|1945987_1946857_+	hypothetical protein	NA	NA	NA	NA
WP_163861302.1\|1946926_1947625_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.5e-72	55.2
WP_163861306.1\|1947633_1948362_+\|tail	phage tail protein	A0A0P0ZDJ9	Stx2-converting_phage	4.1e-86	60.5
WP_163861309.1\|1948265_1948928_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.6e-50	47.6

DBSCAN-SWA_4

2759275 : 2854535

106

Salmonella_phage(25.93%)

terminase,tail,integrase,lysis,tRNA,holin,portal,head,plate,capsid

attL 2764084:2764099|attR 2791423:2791438

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163862127.1\|2759275_2759737_-\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	4.7e-11	39.6
WP_167520922.1\|2759745_2759919_-	hypothetical protein	NA	NA	NA	NA
WP_004918815.1\|2759900_2760371_-	lysozyme	A0A1W6JNW4	Morganella_phage	2.0e-46	55.9
WP_163862130.1\|2760370_2760640_-	hypothetical protein	A0A2H4FNF0	Salmonella_phage	7.4e-25	65.6
WP_120752678.1\|2760789_2760909_-	hypothetical protein	NA	NA	NA	NA
WP_163862133.1\|2761189_2761522_+	hypothetical protein	NA	NA	NA	NA
WP_163862136.1\|2761836_2762616_-	antitermination protein	F1C595	Cronobacter_phage	3.9e-66	49.6
WP_163862139.1\|2762660_2762975_-	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	1.0e-33	68.8
WP_163862143.1\|2762986_2763580_-	DUF1367 family protein	H9C173	Pectobacterium_phage	6.8e-63	57.1
WP_163862146.1\|2763656_2764544_-	DUF2971 domain-containing protein	NA	NA	NA	NA
2764084:2764099	attL	NA	NA	NA	NA
WP_163862149.1\|2764664_2765003_-	hypothetical protein	H9C172	Pectobacterium_phage	6.9e-28	53.2
WP_163862152.1\|2765041_2765515_-	hypothetical protein	NA	NA	NA	NA
WP_163862155.1\|2765551_2765782_-	hypothetical protein	NA	NA	NA	NA
WP_163862157.1\|2766006_2767425_-	AAA family ATPase	H9C165	Pectobacterium_phage	8.1e-171	63.4
WP_163862161.1\|2767414_2768245_-	replication protein	I6NW17	Burkholderia_virus	1.5e-39	61.7
WP_163862164.1\|2768246_2768471_-	hypothetical protein	H9C163	Pectobacterium_phage	1.4e-16	56.8
WP_163862168.1\|2768485_2768941_-\|tRNA	tRNA-(guanine-N1)-methyltransferase	H9C162	Pectobacterium_phage	2.7e-27	52.1
WP_150375409.1\|2768979_2769165_-	hypothetical protein	A0A1W6JP24	Morganella_phage	5.6e-08	60.0
WP_150375407.1\|2769270_2769912_+	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	2.5e-34	37.9
WP_163862172.1\|2770415_2770748_+	hypothetical protein	NA	NA	NA	NA
WP_163862175.1\|2770760_2772779_+	hypothetical protein	H9C157	Pectobacterium_phage	4.3e-125	39.5
WP_163862178.1\|2772778_2773279_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	5.0e-35	51.5
WP_163862181.1\|2773324_2773504_+	hypothetical protein	NA	NA	NA	NA
WP_163862184.1\|2773529_2773760_+	hypothetical protein	A0A1V0E8D1	Vibrio_phage	3.6e-12	52.6
WP_163862187.1\|2773756_2774350_+	HNH endonuclease	M1PKJ5	Streptococcus_phage	5.4e-20	37.9
WP_167520923.1\|2774343_2774514_+	hypothetical protein	NA	NA	NA	NA
WP_163860442.1\|2774510_2774684_+	hypothetical protein	NA	NA	NA	NA
WP_167520924.1\|2774757_2774928_+	hypothetical protein	H9C154	Pectobacterium_phage	4.1e-05	47.2
WP_163862191.1\|2774924_2775143_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.3e-11	50.7
WP_163863608.1\|2775187_2776168_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	5.1e-124	65.0
WP_163862194.1\|2776456_2777467_-\|integrase	tyrosine-type recombinase/integrase	Q94N03	Haemophilus_virus	8.7e-111	58.8
WP_163862197.1\|2777475_2778060_-	hypothetical protein	NA	NA	NA	NA
WP_163862200.1\|2778086_2778698_-	hypothetical protein	NA	NA	NA	NA
WP_121875194.1\|2778716_2779106_-	helix-turn-helix transcriptional regulator	Q6QID2	Burkholderia_phage	6.9e-24	60.4
WP_121875193.1\|2779183_2779375_+	hypothetical protein	NA	NA	NA	NA
WP_121875190.1\|2779826_2779985_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_121875189.1\|2779997_2780429_+	DUF5347 family protein	NA	NA	NA	NA
WP_121875188.1\|2780503_2780764_+	DUF2732 family protein	NA	NA	NA	NA
WP_121875187.1\|2780756_2780978_+	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	3.4e-12	47.2
WP_163862203.1\|2780979_2781246_+	DUF3850 domain-containing protein	A0A2D1GP44	Escherichia_phage	2.4e-07	43.3
WP_163862206.1\|2781268_2782069_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L011	Salmonella_phage	2.9e-61	50.4
WP_163862210.1\|2782068_2782392_+	hypothetical protein	NA	NA	NA	NA
WP_163862212.1\|2782384_2784775_+	replication endonuclease	M1SV59	Escherichia_phage	1.2e-166	48.2
WP_163862215.1\|2784777_2785647_+	DNA cytosine methyltransferase	A0A120HUM8	Bacillus_phage	1.1e-24	26.0
WP_163862218.1\|2785657_2786695_-	hypothetical protein	NA	NA	NA	NA
WP_121875179.1\|2787214_2788240_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.9e-138	68.6
WP_163862221.1\|2788239_2789997_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	3.5e-272	75.3
WP_163862225.1\|2790140_2790974_+\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	7.8e-57	50.9
WP_163862228.1\|2790998_2792084_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-139	72.4
2791423:2791438	attR	NA	NA	NA	NA
WP_163862231.1\|2792083_2792776_+	hypothetical protein	F1BUQ7	Erwinia_phage	3.3e-45	45.8
WP_163862233.1\|2792842_2793307_+\|head	head completion/stabilization protein	A0A0F7LDJ1	Escherichia_phage	7.5e-25	44.0
WP_121875173.1\|2793335_2793539_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	4.4e-14	55.2
WP_121875199.1\|2793572_2793878_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	1.2e-20	49.5
WP_121875172.1\|2793874_2794276_+	structural protein	A0A2I7RXE2	Vibrio_phage	7.6e-26	45.8
WP_163862237.1\|2794795_2795227_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.6e-29	45.7
WP_163862240.1\|2795219_2795834_+	phage virion morphogenesis protein	E5FFH6	Burkholderia_phage	4.3e-12	31.0
WP_163862243.1\|2795903_2796542_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	6.2e-54	54.5
WP_121875247.1\|2796538_2796880_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	4.8e-29	54.1
WP_163862246.1\|2796883_2797792_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.8e-107	66.2
WP_163862249.1\|2797784_2798396_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.0e-74	64.8
WP_163863610.1\|2800545_2800806_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	4.9e-18	60.0
WP_163862253.1\|2800916_2802089_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.0e-171	75.3
WP_163767839.1\|2802091_2802607_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	8.0e-52	56.7
WP_163862256.1\|2802617_2802926_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.3e-22	62.2
WP_121875239.1\|2802937_2803060_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	6.9e-07	64.1
WP_163862259.1\|2803052_2805992_+\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	4.8e-117	46.2
WP_163767912.1\|2806000_2806462_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.9e-39	53.0
WP_163862262.1\|2806458_2807556_+	phage late control D family protein	E5G6Q3	Salmonella_phage	1.2e-113	59.9
WP_163862265.1\|2807642_2807855_+	transcriptional regulator	A0A0F7LDQ9	Escherichia_phage	2.3e-13	55.7
WP_154624726.1\|2808487_2809036_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_163862268.1\|2809093_2810926_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_154624725.1\|2810892_2811579_-	response regulator	NA	NA	NA	NA
WP_154624724.1\|2811799_2813032_-	peptidase T	NA	NA	NA	NA
WP_154624723.1\|2813065_2814619_-	TIGR00366 family protein	NA	NA	NA	NA
WP_154624556.1\|2814911_2815328_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_154624558.1\|2815987_2816269_-	hypothetical protein	NA	NA	NA	NA
WP_163863613.1\|2816477_2817953_-	DUF3999 family protein	NA	NA	NA	NA
WP_163862271.1\|2817939_2820714_-	DUF2339 domain-containing protein	NA	NA	NA	NA
WP_163862274.1\|2821251_2822175_+	AEC family transporter	NA	NA	NA	NA
WP_154621836.1\|2822310_2823294_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_154621837.1\|2823482_2823971_+	DUF4822 domain-containing protein	NA	NA	NA	NA
WP_163862279.1\|2824037_2825507_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_163862282.1\|2826545_2827571_+	SEL1-like repeat protein	NA	NA	NA	NA
WP_154621838.1\|2827620_2828304_-	two-component response regulator DpiA	NA	NA	NA	NA
WP_154621839.1\|2828305_2829934_-	sensor histidine kinase DpiB	NA	NA	NA	NA
WP_163862286.1\|2830302_2831379_+	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
WP_154622461.1\|2831375_2831672_+	citrate lyase acyl carrier protein	NA	NA	NA	NA
WP_154622462.1\|2831671_2832568_+	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
WP_154622463.1\|2832578_2834105_+	citrate lyase subunit alpha	NA	NA	NA	NA
WP_163862289.1\|2834109_2834655_+	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_163862292.1\|2834635_2835520_+	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
WP_154623068.1\|2835756_2837190_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_163862295.1\|2837385_2838423_+	4-oxalomesaconate tautomerase	NA	NA	NA	NA
WP_154623070.1\|2838490_2839612_-	AAA family ATPase	NA	NA	NA	NA
WP_154623071.1\|2839608_2840319_-	2'-5' RNA ligase	A0A292GKV8	Xanthomonas_phage	2.9e-20	32.6
WP_163862299.1\|2840595_2841912_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_154622928.1\|2842517_2843609_+	oxidoreductase	NA	NA	NA	NA
WP_154622929.1\|2843663_2843984_-	hypothetical protein	NA	NA	NA	NA
WP_154622930.1\|2844143_2845016_-	EamA family transporter	NA	NA	NA	NA
WP_154622931.1\|2845324_2845540_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
WP_163862302.1\|2845624_2847097_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_154624575.1\|2847785_2848133_+	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_163862306.1\|2848470_2850138_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.0e-52	30.9
WP_163862311.1\|2850177_2851656_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_154624572.1\|2851685_2852282_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_154624571.1\|2852492_2854535_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	1.5e-21	28.2

DBSCAN-SWA_5

3002696 : 3049165

uncultured_Caudovirales_phage(50.0%)

protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154623941.1\|3002696_3004034_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_154623940.1\|3004030_3004687_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_154623939.1\|3004689_3006426_+	OmpA family protein	NA	NA	NA	NA
WP_004912469.1\|3006428_3006920_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_154623938.1\|3007090_3009751_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.3e-97	30.7
WP_154623937.1\|3009776_3010289_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_163863623.1\|3010942_3011518_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_163862449.1\|3011850_3012348_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_163862451.1\|3012332_3012542_+	hypothetical protein	NA	NA	NA	NA
WP_163862454.1\|3012560_3013103_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_163862457.1\|3013090_3013516_+	hypothetical protein	NA	NA	NA	NA
WP_163862460.1\|3013512_3013878_+	hypothetical protein	NA	NA	NA	NA
WP_163862462.1\|3013883_3014141_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_163862465.1\|3014964_3017364_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	7.1e-18	31.3
WP_163862468.1\|3017356_3018145_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_163862471.1\|3018181_3018718_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_163862474.1\|3018761_3019304_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_163862476.1\|3019291_3021754_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_163862479.1\|3021824_3022082_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_163862483.1\|3022078_3023209_+	hypothetical protein	NA	NA	NA	NA
WP_163862486.1\|3023195_3026564_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_163862506.1\|3026584_3028195_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_154623924.1\|3028235_3029987_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_163862522.1\|3029962_3031054_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_163862538.1\|3031069_3031609_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_154623921.1\|3031611_3032040_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_163863624.1\|3032096_3033449_+	hypothetical protein	NA	NA	NA	NA
WP_163862540.1\|3033501_3034680_+	DUF3828 domain-containing protein	NA	NA	NA	NA
WP_154635717.1\|3034778_3035501_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_163862543.1\|3035735_3036023_-	hypothetical protein	NA	NA	NA	NA
WP_154635719.1\|3036174_3036687_-	hypothetical protein	NA	NA	NA	NA
WP_154635720.1\|3036748_3037141_-	hypothetical protein	NA	NA	NA	NA
WP_154635721.1\|3037207_3037720_-	DUF2569 family protein	NA	NA	NA	NA
WP_163862546.1\|3037928_3038747_-	hypothetical protein	NA	NA	NA	NA
WP_163862549.1\|3038715_3038922_-	hypothetical protein	NA	NA	NA	NA
WP_154625018.1\|3039050_3040262_-	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	1.2e-08	25.8
WP_163862552.1\|3040266_3041274_-	DUF3396 domain-containing protein	NA	NA	NA	NA
WP_163862555.1\|3041377_3041845_-	hypothetical protein	NA	NA	NA	NA
WP_163862558.1\|3041902_3043843_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_163862560.1\|3043835_3044348_-	hypothetical protein	NA	NA	NA	NA
WP_163862563.1\|3044347_3045175_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_163862565.1\|3045177_3047511_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.7e-14	28.5
WP_163862568.1\|3047515_3048037_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_154624970.1\|3048082_3049165_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_6

3387255 : 3394135

Mycobacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014657708.1\|3387255_3387465_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	7.7e-22	79.7
WP_154622611.1\|3387684_3388143_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2P1EL10	Moumouvirus	3.9e-18	35.9
WP_154622610.1\|3388433_3388661_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.6e-17	54.8
WP_154622609.1\|3388670_3389084_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	9.0e-14	40.2
WP_163862818.1\|3389093_3391226_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.5e-213	52.3
WP_154622607.1\|3391239_3392211_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.7e-135	73.1
WP_154635681.1\|3392932_3394135_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	9.9e-29	37.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048797

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP048796

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection