CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022580	Mycolicibacterium boenickei strain JCM 15653 plasmid pJCM15653, complete sequence	0 crisprs	NA	0	0	0	0
NZ_AP022579	Mycolicibacterium boenickei strain JCM 15653	4 crisprs	Cas14u_CAS-V,cas3,DEDDh,csa3,c2c9_V-U4,DinG,cas4,WYL	0	2	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022579_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022579_1

712545-712671

Orphan

Consensus_repeat	Method
GGGCTGTGACTCGCGTTTCGGGGCGACCGTCAGGTAGAAACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022579_1

>merge|NZ_AP022579|1|712545-712671|CRISPRCasFinder
GGGCTGTGACTCGCGTTTCGGGGCGACCGTCAGGTAGAAACCGGCGAACGACGCCGCAAAGCCTTTGCGCCGCTTTCCACGCCTGGGCTGTGACTCGCGTTTTGGGGCGACCGTCAGGTAGAAACCG

>NZ_AP022579|1|1|712545-712671|CRISPRCasFinder
GGGCTGTGACTCGCGTTTCGGGGCGACCGTCAGGTAGAAACCG	GCGAACGACGCCGCAAAGCCTTTGCGCCGCTTTCCACGCCT
GGGCTGTGACTCGCGTTTTGGGGCGACCGTCAGGTAGAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022579.1\|WP_077738658.1\|714996_715269_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_162563902.1\|714107_714713_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_AP022579.1\|WP_077738664.1\|707860_710311_+\|transglycosylase/D,D-transpeptidase-PonA2	unknown	unknown	gnl\|CDD\|223815
NZ_AP022579.1\|WP_077738663.1\|710338_711283_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224326
NZ_AP022579.1\|WP_077738655.1\|716822_717137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077738659.1\|714799_714997_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_AP022579.1\|WP_077738669.1\|700632_701766_+\|ArsA-family-ATPase	unknown	unknown	gnl\|CDD\|223082
NZ_AP022579.1\|WP_077738668.1\|701732_702593_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_AP022579.1\|WP_077738654.1\|718273_719428_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_AP022579.1\|WP_077738661.1\|712876_714121_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_AP022579.1\|WP_077738666.1\|704017_705385_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143505
NZ_AP022579.1\|WP_133118332.1\|716571_716823_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_133118331.1\|715381_715774_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077738662.1\|711279_712386_+\|PLP-dependent-cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|223110
NZ_AP022579.1\|WP_077738670.1\|699604_700633_+\|ArsA-family-ATPase	unknown	unknown	gnl\|CDD\|223082
NZ_AP022579.1\|WP_077738665.1\|705508_707110_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379258
NZ_AP022579.1\|WP_162563901.1\|717112_717334_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_003883813.1\|707204_707534_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_AP022579.1\|WP_077738667.1\|702589_704002_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_AP022579.1\|WP_077738653.1\|719517_721737_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|280017

Protein	Function_ID	Function_description	E-value
NZ_AP022579.1\|WP_162563902.1\|714107_714713_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.4235e-07
NZ_AP022579.1\|WP_077738664.1\|707860_710311_+\|transglycosylase/D,D-transpeptidase-PonA2	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	3.62023e-142
NZ_AP022579.1\|WP_077738663.1\|710338_711283_+\|metallophosphoesterase	gnl\|CDD\|224326	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only].	1.74812e-70
NZ_AP022579.1\|WP_077738659.1\|714799_714997_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.43204e-07
NZ_AP022579.1\|WP_077738669.1\|700632_701766_+\|ArsA-family-ATPase	gnl\|CDD\|223082	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning].	1.50783e-77
NZ_AP022579.1\|WP_077738668.1\|701732_702593_-\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	6.97241e-29
NZ_AP022579.1\|WP_077738654.1\|718273_719428_+\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	6.60325e-08
NZ_AP022579.1\|WP_077738661.1\|712876_714121_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.34619e-30
NZ_AP022579.1\|WP_077738666.1\|704017_705385_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143505	cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.	0
NZ_AP022579.1\|WP_077738662.1\|711279_712386_+\|PLP-dependent-cysteine-synthase-family-protein	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	4.65816e-96
NZ_AP022579.1\|WP_077738670.1\|699604_700633_+\|ArsA-family-ATPase	gnl\|CDD\|223082	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning].	9.19018e-56
NZ_AP022579.1\|WP_077738665.1\|705508_707110_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379258	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain. This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Bacillus subtilis pucR and is likely to be DNA-binding.	1.67065e-12
NZ_AP022579.1\|WP_003883813.1\|707204_707534_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	8.94304e-23
NZ_AP022579.1\|WP_077738667.1\|702589_704002_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	4.69557e-157
NZ_AP022579.1\|WP_077738653.1\|719517_721737_+\|hypothetical-protein	gnl\|CDD\|280017	pfam01763, Herpes_UL6, Herpesvirus UL6 like. This family consists of various proteins from the herpesviridae that are similar to herpes simplex virus type I UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome.	0.00139525

>NZ_AP022579.1|WP_077738662.1|711279_712386_+|PLP-dependent-cysteine-synthase-family-protein
MSRPADTASHPRPRRWVDNAVRLIEADSKRSADTHLLRYPLPVKWREDVDVALYLKDESTHITGSLKHRLARSLFLYGLCNGWIGEGTTIIEASSGSTAVSEAYFAALLGLPFIAVVPASTSGSKIALIEAQGGRCHFVAESSQVYAEAHRLAEETGGHYLDQFTNAERATDWRGNNNIAESIYEQMRLEPHPVPEWIVVGAGTGGTSATIGRYIRYRRHATQLCVVDPENSAFFPGYAQGRDDIVTGASSRIEGIGRPRVEPSFLPGVVDRMIAVPDSGSVAAAHHASRVLGRRVGPSTGTNLWGAFQLLAEMIAHGRSGSVVTLLADSGDRYADTYFDADWLSAQGLDTSGSAEVLSEFERSGSWS
>NZ_AP022579.1|WP_077738663.1|710338_711283_+|metallophosphoesterase
MSVKKAAAVTAGSLVAGIGYASLIERNAFVLREATMPVLAPGSSPLRVLHLSDLHMRPNQRRKQAWLRDLARLEPDLVVNTGDNLAHPKAVPAVVQSLSDLLSAPGLFVFGSNDYFAPRLKNPLNYLTNPQHRSHGEPLPWQDLRAAFTERGWLDMTHIRRDVEVAGLHISVAGVDDPHLKRDRYDTIAGRANGAANLTLGLTHSPEPRVLDRFAADGYQLVLAGHTHGGQLCLPFYGAIVTNCELDRSRAKGASKWGSHMQLHVSAGIGTSPFAPVRFCCRPEATLLTLVAAPTGGGHVGTRAGQSSPTVSAR
>NZ_AP022579.1|WP_077738664.1|707860_710311_+|transglycosylase/D,D-transpeptidase-PonA2
MPEQPTRPPAQPPQAVTIIKLAWCCLLASVLVATFMFPVVGGFGLMSNRASDVVANGSAALVDGEVPQVSTMVDAKGNTIAWLYSQRRFEVPSDQIANTMKLALVSIEDKRFAEHNGVDWQGTLTGLTGYMRGDADTRGGSTVEQQYVKNYQLLVVAQTDAERRAAIETTPARKLREIRMALTLDKTFTKPEILTRYLNLVSFGNGAFGVQDAAQTYFGINASELNWQQSALLAGMVQSTSALNPYTNPDGALARRNLVLDTMIENIPQEAEALRAAKQQPLGILPQPNELPRGCIAAGDRAFFCDYALEYLARAGLSKEQVAKGGYLIKTTLDPDVQGSVKAAIDGIARPDAPGIASVMSVIKPGKESHPVLAMGSNRTYGLNTDAGETMQPQPFSLVGDGAGSIFKIFTTAAAMDMGMGINTQLAVPGFFQAKGLGSSDTPGCPKDTWCVKNAGGYRGSMSVTDALATSPNTAFAKLISQIGVQRSVDMAVRLGLRSYALPGTARDYDPESNESLADFVKRQNIGSFTLGPIEVNALELSNVAATLASGGTWCPPNPIAQVLDRHGNEVSVTTETCDQAVPEGLANTLANAMSKDDQAGGTASGSAGSVGWDLPMSGKTGTTEAHRSSGFLGFTNQYAAANYIYDDSTSPGELCSFPLRQCGDGDLFGGNEPARTWFTALKPIANNFGPVVMPPTDPRYVDGGPGSVVPTVNGLDEPVARQRLKEAGFQVADGAASVNSSSRAGTVVGTAPSGQTIPGSIVTIQVSNGIPPAPPPPPIAFPMPGGPPPEIGQTVVEIPGLPPITVPVLGPPPPP
>NZ_AP022579.1|WP_003883813.1|707204_707534_-|WhiB-family-transcriptional-regulator
MNASAPAANLVHRGEGEARIAWVSQARCRQADPDELFVRGAAQRKAAVICRHCPVILECGADALDNRVEFGVWGGMTERQRRALLKQHPEVISWAEFFAAQRKHHRSAV
>NZ_AP022579.1|WP_077738665.1|705508_707110_-|helix-turn-helix-domain-containing-protein
MSEAASVLPLSAMVSGAAGMLMPLPAAETGDDPLLSDVALHEPGVRGTDYSGTIVLVSARVEDRFALGSLLDEVGTAAAVVLPPDATTDVSMLPGHATRLFRRSPWVGWSELFRALIRLLGAGQIVSPAPQVDNLQALARWISGQTGAPVTVEDLDSRVLAYAVVGPGVDPIRNQTILGGAVPAWRVERLMSTGFLPAVWRSDDVVVRNAEDDDPARMVVAMKSGTETLGTIWAALDDDTDREALRQLLLQVRRTAAAMMLREVHRDQYERRLQESALVDLLSRGVDPGVPGALLGLQPDSRHAVLALGADTPASRSLMFHVQALRAGARTARVSDGLLVVLPVLDEESTAADLADNLSAHLSRVSPAHAGPVAVGPVVEAIADLRDSAIVARQVLDAAALDAAHPPHDRRPVLTAADVPDALTLVRAADLLGPMADAITAPLTALRKHDSDHGTAFVATVAAVLDHPGSLTGAARQLGIHANSLRYRLDRIRAVSDIDLQSQAARLRASLSLLIWERCTGTPVDIDKNPGSG
>NZ_AP022579.1|WP_077738666.1|704017_705385_-|diaminopimelate-decarboxylase
MIDAPPRNRDALPTPDTLLRRREQLVADVARQEYIDDLHPLCGVMDLDTLDELMRSLSQAYPAGMPALHTIAAKAITLRPVLARFAQAGFGCEVASPGELRLALAAGFPAERIVFDSPAKTTTEIEQALELGISFNIDNFEELARVDQAIARVGVPRSVIGVRLNPQTGAGAIGAMSTATSTSKFGIGLADHREAVIAAFAVRPWLTQLHVHSGSQGLSLEHAAEGVRLITDLAAEITARTGHQQVRRIDIGGGLPVNFGSDDITPTFADHRTVLERVAPELFDGTYGLVTEFGRALTAKAGTIVARVEYTKVTGGRQIAITHAGVQVATRTIFGPGEWPLRIDVYDAQGRRRGEQPQLQDVAGPACFTGDMLAVGRELPFVYPGDLVAVPDTGGYYFSTHFSYNALPRPAVYAVETGPDGGRRWSLVRRAQTIEEIVTEAGEPSLVPLPIRPCD
>NZ_AP022579.1|WP_077738667.1|702589_704002_-|amino-acid-permease
MLESEPQLSSADEPRSGLARSLKTRHMTMIAIGGAIGAGLFVGSGAVIKTAGPAAILSYVLAGALVLCTLRMLGEMVVAKPRTGAFADYARMGIGPWAGFTLGWLYWYYYVIIIAVEAVAGAKILSVWVGLPLWIMAMLLMAVMTVTNLISVRWFGEFEFWFSGIKVAAIVSFIVLGLLWVLGLWPGDTGGLSNLVAHGGFAPNGVGSILGAVVVVIFAFGGAEIVTIAAAESAEPAKSVARATTGVIWRIILFYVGSIFLVVCILPWNDASVLSSPYVAALDKLQIPGAGVIMNFVILTAVLSVLNSSIYTSSRMLRVLASHGDAPEWLVRTNSRGVPTRAVLASTVIGWISVVLAYIAPDSLFLFLVNSCGVVAIFMYVMIGVSELRVRRAIERDDPSKLTLKMWFFPYLTIVVIACFVLVLLAMLFDVDQRVQLLASVLSLVVVVVAYALRKRFGRVPVDADVAEVA
>NZ_AP022579.1|WP_077738668.1|701732_702593_-|serine-hydrolase
MSGFFSQASSWLTDMATWSARITDLTTGRTLWEHTPHRVLKTASVGKVFLLAEVARRFDDGTLDPGEVVASTAEDQVADSGILYLLRQQDHRIDDLCLLIGAVSDNMATNMLLRRLGLDAVQRATRDLGFTVSGLRDRVRLNRSQDDPLTLSTGSAAELCEFVARLYAGDIHGAAVSERLRRWLGVNTDLSMVARAMGLDPLAHTEPDAGFELWNKTGTISDARIDIGCVGHPGSGRRVGYAVLANWAWGEEHRDPVLETMGRLGTEIRRYLEGAGQAAPTASPVI
>NZ_AP022579.1|WP_077738669.1|700632_701766_+|ArsA-family-ATPase
MSAKPPALDMHSILSDTANRVVVCCGAGGVGKTTTAAAMALRAAEYGRTVVVLTIDPAKRLAQALGIKDLGNTPQRVPLAPEVTGELHAMMLDMRRTFDEMVVQYSGADRADSILENQFYQTVATSLAGTQEYMAMEKLGQLLAEDKWDLVVVDTPPSRNALDFLDAPKRLGSFMDSRLWRMLLAPGRGIGRLVTGAVGLAMKALSTVLGSQMLSDAAGFVQSLDATFGGFREKADRTYELLKRRGTQFVVVSAAEPDALREASFFVDRLSNEHMPLAGLILNRTHPTLCDLHAEKAEEAADELAAEDPESLAAAVLRIHADRAQTAKREVRLLSRFTGANPHVAIVGVPSLPFDVSDLEALRAIADQITGEAVGAA
>NZ_AP022579.1|WP_077738670.1|699604_700633_+|ArsA-family-ATPase
MATTESGAKHVGWPSRLTKARLHFVSGKGGTGKSTVAAALALALAAGGRKVLLVEVEERQGIAQLFDVPPLPYEEVKVATADGGGQVNALAIDIEAAFLEYLDMFYNLGLAGRAMRRIGAIEFATTIAPGLRDVLLTGKIKEIVTREKKDAKGKRGVYDAVVVDSPPTGRIPRFLDVTKAVSDLAKGGPVHSQADGVVKLLHSEQTAIHLVTLLEALPIQETLEAIEELTEMGLPIGSVIVNRNIPAYLPAEDLAKAAEGDIDADAVRAGLDKAGITLTDNDFAGLLTESIQHATRIAARAESAELLDAIDVPRLELPSLADGVDLGSLYELAEALEQQGVR
>NZ_AP022579.1|WP_077738661.1|712876_714121_-|site-specific-integrase
MQRRNRRSGVEDRWTKTTRAADGSTQTVPSAAYGKGKRWRARYVDTDGREVAKGFARKVDAAEWLEGVTSTIVTGTYVAPGAGSVTVGQMREQWLKHQAHVKDSTKAARASAWTVHVQDRWQDVAVVDVQTSAVRAWVDEMHRPQDDGGSGAEAATIENALGVLRMVLALAVEDRRIPRNPCDGVKAPRRKHSVRAYLTHRQVAELAAAMARDALVVRFLAYTGLRYGEMAALKVQSFDMLRRRVNIRESVTEVSGKLVWSTPKNHERRSVPFPKFLVADLAARMEGKGREDLVFSAPAGGVLRIATFRTRVFNKAVDQLRGLGDDGEPTTDWPRPTLHDLRHTAASLAISAGANVKAVQTMLGHKSAALTLDTYADLFPDDLEAVADAFDAAVEALAKTTADALRTETGSGPR
>NZ_AP022579.1|WP_162563902.1|714107_714713_-|helix-turn-helix-domain-containing-protein
MQHEPDGVARNFGKAVRQRRSAIGVSQRKLSELLLDKTGVKLDASAITRIEKGQRDLKLAEAAAIANVLGVGIDQLTREIEEAEPAGLIEIRDAYQELRKRHAVVKAQIQAYYADAYALAVPLAADADARNMLPPDELRKMSNDVIRATDAARKLLAVFGDSPPKFGNMTHERLGNIPLGFGEALKILSQIHSQAAEDAEA
>NZ_AP022579.1|WP_077738659.1|714799_714997_+|helix-turn-helix-domain-containing-protein
MELLGTRAASSLLGIPEATLRYWRHTDEGPPSFKLGGRVVYRRNELERWVEEQEAATVRGGRAAV
>NZ_AP022579.1|WP_077738658.1|714996_715269_+|hypothetical-protein
MERPEEAHVIANRLAASPWFPIPATVDGVRDSAAHIEVDGPAVLITVTDPDGTKREYRAQVVLISNSETVPAEPRCANTGPETAAANQLS
>NZ_AP022579.1|WP_133118331.1|715381_715774_+|hypothetical-protein
MTELHGPLAFPQEDPAEVIRRDQAIMLQEARDQIPFAHVPLPAAAQGAGLWEDSVDDTWTRLVDGTRRTVGPLSVCISGVQSPDGSVVWSAAAETKDDAVTSAQLREYAALLIVAAAELDYLNRPQPSTE
>NZ_AP022579.1|WP_133118332.1|716571_716823_+|hypothetical-protein
MSRKIPAVHQAYVAAEALDHPCPTCGAAIDCPCTRIDDNGRTHYRHVPCIKRCQQPLYVEFADDQGEQAEIDFTEPRHPHKES
>NZ_AP022579.1|WP_077738655.1|716822_717137_+|hypothetical-protein
MTDDKEIRIRIAAEKLAAQICPEFEIADSPRTFANEELHRMVMDWFGHLEPYLPDTDDWRSMPLRLAHDQGQGWHIELGPYDLNRADIELLRRAIAAYDQATGR
>NZ_AP022579.1|WP_162563901.1|717112_717334_-|hypothetical-protein
MLEPSSAAGQCWAGPTLAQSRLVAVLDDVGVLVLMRWVEQCTAATTLGTGQRWGLADGREQIVERTHLPVAWS
>NZ_AP022579.1|WP_077738654.1|718273_719428_+|phage-major-capsid-protein
MDVRERRNLLVKEARTIAEKARAEGRDMLTADEQREIETRITEVKSLNGILADEARSKSILGQLDAMASGGPSPQPGGGGELAPVLGALEPGKMLSFGAKMAEVAAAKVMPAGQKALATSGNILVGQEFSPSPITMEKPANTLLAALPVRQHSTPSWKYLRQSARTNNADVVADGATKPTSVYSVVEVENSLVIIAHLSEGVPRYWFFDNTSMQQFLSNELAYGIGLKVEAKALADINATVGIQTQAYSSSVLETLRKSVTKLEVLGYVPAWFLIHPTDWEALELTLLTQEALDYRSLPFDPVARRLFGVPVIVSTAQAVGVSHTVAKGVVELDTDTAGVLLQWSETSNADDFAKNLVRARMEGRFATTVYSPLGVVKGDLTAA
>NZ_AP022579.1|WP_077738653.1|719517_721737_+|hypothetical-protein
MTTIGTAVLQIIPSLRGVTEAIESQIDGKAIEIQVKPKVDQRATEAAAKETRETVEKQTTEVKVQPKVDKRAAEQAGKDLGDEITKTVEKSSPGKDLAKVLVDGIADGVKDELRGGPLVDEFVDGLADGVKQGIDQGGVSKTILSTISDGLKSGNVGGTIKDAILPTITGIGPAIRGSVGEWSSGIANALRSGEIFGATADVKKAILATTTDAIGEITGLKGALNSVDVGPVQNGLKNISDVLSGFDKNGDSGLERALGKVGGHAGNLAGMVGNAQALINLLNDPKTEEALNKIPGMGVAKDVIANKPAEAGAGVRQWVIDNLGITPPDVSKWEGFRKKEERVYSGGEGTFGDGGYTGNFPVDKIAGVVHGGEFVIRKSATDALQSKAPGLLDALNGYKDGGLVGPDVSVAKALAGIPYSQGNRTDCSGMVSRVILQSLGKSGGLMTTKTADKWLSALGFRSGTGGPGAITVGWYDRGPNPNDGHMAMTLSDGTHAEAGGRNRVFTLGAGARGGEDSSFDRHMFLNLLVGKGSASGDGQITGEGPATGGIPAASTTDAVTAAVNSGGSGSGGVSLASSISGLAGMGGDAISAGHTSSEGHRDPLAPKYFPKAVSAAVSGQVSSALGVFGVNDSPGWLKGISDFVGGISVSDKNGKKVFDGGNIGGTFGDAGSLFGGAAPAAPPAPAPAALPSGAMHGAQAGQKPGPTVNYNIRTALTEDAFIEARKQEQIRIASKVDRY

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Crispr_ID: NZ_AP022579_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022579_2

1331155-1331513

Orphan

Consensus_repeat	Method
CGCCGCCGTAGCCGCCCTGCTGGCCG	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_AP022579_2

>merge|NZ_AP022579|2|1331155-1331513|CRISPRCasFinder
CGCCGCCGTAGCCGCCCTGCTGGCCGCCGTACCCCGGCTGACCCCCCTGCGGTGCGCCGTAGTCGCCGCCGTAGCCGCCCTGCTCGCCGTAACCGGGCTCGCCGTATCCGCCCTGCTCGGGGTAACCACCCTGCTGAGGCTCGGCGTAGCCGCGGCCGTAATCCTGCGGTTGGCCGTACTCCTGGCGCCCGTAGGGCTGACCGCCGCCGTAGCCGCCGCCCTGCTCGGGGTAGCCGCCACCCTGGCGCGGGTCCTGACGTCCGTAGTCGTACTCGCCGCCGCCGTACCCGGGCTGACCACCCGGCGCGGGCTGGCCGTAGCCGCCGCCCGGCTGGCCGCCGTAGCCACGGTCATAACCG

>NZ_AP022579|2|2|1331155-1331513|CRISPRCasFinder
CGCCGCCGTAGCCGCCCTGCTGGCCG	CCGTACCCCGGCTGACCCCCCTGCGGTGCGCCGTAGT
CGCCGCCGTAGCCGCCCTGCTCGCCG	TAACCGGGCTCGCCGTATCCGCCCTGCTCGGGGTAACCACCCTGCTGAGGCTCGGCGTAGC
CGCGGCCGTAATCCTGCGGTTGGCCG	TACTCCTGGCGCCCGTAGGGCTGAC
CGCCGCCGTAGCCGCCGCCCTGCTCG	GGGTAGCCGCCACCCTGGCGCGGGTCCTGACGTCCGTAGTCGTACTCGC
CGCCGCCGTACCCGGGCTGACCACCC	GGCGCGGGCTGGCCGTAGCCGCCGCCCGGCT
GGCCGCCGTAGCCACGGTCATAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022579.1\|WP_077739732.1\|1342274_1343240_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_AP022579.1\|WP_077739723.1\|1325766_1327242_-\|D,D-transpeptidase-PbpA	unknown	unknown	gnl\|CDD\|223839
NZ_AP022579.1\|WP_029110475.1\|1330250_1330718_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224630
NZ_AP022579.1\|WP_077739718.1\|1320214_1320631_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|371225
NZ_AP022579.1\|WP_077739724.1\|1327238_1328654_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|279444
NZ_AP022579.1\|WP_077739730.1\|1340534_1341692_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077739725.1\|1332736_1333540_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP022579.1\|WP_097926323.1\|1328650_1330165_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_AP022579.1\|WP_077739733.1\|1343284_1343551_+\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|188337
NZ_AP022579.1\|WP_077739727.1\|1334461_1335235_-\|4,5-DOPA-dioxygenase-extradiol	unknown	unknown	gnl\|CDD\|153375
NZ_AP022579.1\|WP_097926324.1\|1324466_1325744_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_AP022579.1\|WP_077739728.1\|1335265_1335907_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|376405
NZ_AP022579.1\|WP_077739719.1\|1321165_1321915_+\|DUF881-domain-containing-protein	unknown	unknown	gnl\|CDD\|226396
NZ_AP022579.1\|WP_077739720.1\|1321946_1322621_+\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|181107
NZ_AP022579.1\|WP_077739731.1\|1341774_1342278_+\|PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274679
NZ_AP022579.1\|WP_077739726.1\|1333540_1334407_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_AP022579.1\|WP_077739721.1\|1322598_1324470_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_AP022579.1\|WP_077739729.1\|1338073_1340533_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_036443688.1\|1320786_1321071_-\|cell-division-protein-CrgA	unknown	unknown	gnl\|CDD\|178907
NZ_AP022579.1\|WP_077741792.1\|1336133_1338077_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022579.1\|WP_077739732.1\|1342274_1343240_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.23289e-62
NZ_AP022579.1\|WP_077739723.1\|1325766_1327242_-\|D,D-transpeptidase-PbpA	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	3.34596e-99
NZ_AP022579.1\|WP_029110475.1\|1330250_1330718_-\|FHA-domain-containing-protein	gnl\|CDD\|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	9.1627e-28
NZ_AP022579.1\|WP_077739718.1\|1320214_1320631_-\|PH-domain-containing-protein	gnl\|CDD\|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	1.74028e-12
NZ_AP022579.1\|WP_077739724.1\|1327238_1328654_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|279444	pfam01098, FTSW_RODA_SPOVE, Cell cycle protein. This entry includes the following members; FtsW, RodA, SpoVE.	2.92661e-97
NZ_AP022579.1\|WP_077739733.1\|1343284_1343551_+\|DivIVA-domain-containing-protein	gnl\|CDD\|188337	TIGR03543, divI1A_rptt_fam, DivIVA domain repeat protein. Members of this protein family contain two full and two partial repeats of a domain found at the N-terminus of Bacillus subtilis cell-division initiation protein DivIVA. The portion repeated four times in these proteins includes the motif GYxxxxVD.	2.82916e-08
NZ_AP022579.1\|WP_077739725.1\|1332736_1333540_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.28262e-18
NZ_AP022579.1\|WP_097926323.1\|1328650_1330165_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	4.85224e-82
NZ_AP022579.1\|WP_077739727.1\|1334461_1335235_-\|4,5-DOPA-dioxygenase-extradiol	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	2.55568e-107
NZ_AP022579.1\|WP_097926324.1\|1324466_1325744_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.80767e-113
NZ_AP022579.1\|WP_077739728.1\|1335265_1335907_-\|nitroreductase-family-protein	gnl\|CDD\|376405	pfam00881, Nitroreductase, Nitroreductase family. The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds.	3.43509e-27
NZ_AP022579.1\|WP_077739719.1\|1321165_1321915_+\|DUF881-domain-containing-protein	gnl\|CDD\|226396	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown].	1.9243e-66
NZ_AP022579.1\|WP_077739720.1\|1321946_1322621_+\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|181107	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II.	3.93558e-151
NZ_AP022579.1\|WP_077739731.1\|1341774_1342278_+\|PPOX-class-F420-dependent-oxidoreductase	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	2.71851e-31
NZ_AP022579.1\|WP_077739726.1\|1333540_1334407_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.76316e-174
NZ_AP022579.1\|WP_077739721.1\|1322598_1324470_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.75313e-131
NZ_AP022579.1\|WP_036443688.1\|1320786_1321071_-\|cell-division-protein-CrgA	gnl\|CDD\|178907	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed.	4.95504e-45

>NZ_AP022579.1|WP_029110475.1|1330250_1330718_-|FHA-domain-containing-protein
MQGLVLQLTRVGFLLLLWLFIWSVLRILRTDIYAPTGAVMVRRGLALRGSLLPSRDRRHIARQLVVTEGALAGTRITLGAQPVLIGRADDSTLVLTDDYASTRHARLSPRGSEWYVEDLGSTNGTYLDRAKVTTAVRVSIGTPVRIGKTVIELRP
>NZ_AP022579.1|WP_097926323.1|1328650_1330165_-|serine/threonine-protein-phosphatase
MTLVLRYAARSDRGLVRANNEDSVYAGARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLGKLNTAVGQGNAAIAAHVEADPELEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITAEEAHSHPQRSLIMRALTGHEVEPTLIMREAKAGDRYLLCSDGLSDPVSHETIHEALQIEDVAESADRLIELALRGGGPDNVTVVVADVVDYDYGQTQPILAGAVSGNDDQSAPPDTAAGRASAFNPRRNEPKRVVPQPAEPDRRPRSRRRILIAAVLLVLVLIGGLAIGREIIRNNYYVAEHEGTVSIMRGVQGTFLGVSLQEPYRLGCLNARNELSLISADQDRGRLDCRLMAVDDMRPSARASVRAGLPGGTQDEAIQQINDLARSSVLPVCAPRTATTTSKPTPAPSPSPSPSPSPAPGASPAPTPTPSGEPPAPETPAPETPGPVVPTPAPSPTVTALPPPPPEPGTNCRAVS
>NZ_AP022579.1|WP_077739724.1|1327238_1328654_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MTTQPQSPVTVMPPLPNRRNAELLLLGFAAFITTVALLIVEANQEQGISWDMVSYVLTFIALMGAAHLAIRRFAPYADPLLLPVVALLNGLGLVMIHRLDLAKGQTASDGLGGTANQQMMWTLVGVIGFSVVVALLTDHRMLARYGYICGLTGLVLLVIPALLPAKYSEQYGAKIWIQFPGFSIQPAEFSKILLLIFFAAVLVAKRDLFTSAGKHFLGLDLPRPRDLAPLLLAWAASVGVMVFEKDLGTSLLLYASFLVLLYVATERLSWVVLGLALFAAGSVVAYQVFGHVRVRVETWLDPFADPDGAGYQMVQSLFSFATGGIFGTGLGNGQPGTVPAAATDFIIAAIGEELGLVGLAGVLMLYTILIIRGMRTAIAVRDSFGKLLAAGLASTLAIQLFIVVGGVTKLIPLTGLTTPWMSYGGSSLLANYILLAILVRISHAARRPITTTPTPNPTPIAAASTEVIEKV
>NZ_AP022579.1|WP_077739723.1|1325766_1327242_-|D,D-transpeptidase-PbpA
MNTSLRRVAVTIMVLIVLLLANATITQVFTADGLRADPRNQRVLLDEYSRQRGQITAGGQLLAYSVATDGRFRFLRTYPEPEAYAPVTGFYSLGYSSTGLERAEDAILNGSDERLFGRRLADFFTGRDPRGGNVDTTIKPQVQEAAWDALQHGCDGPCKGSVVALEPSTGKILAMASSPSYDPNQLATHDLNAQSQAWQQLRDNEQSPLLNRAISETYPPGSTFKVITTAAALQSGSTPDTPLTAAPRIPLPDSTATLENFGGASCGPGPTATLREAFAKSCNTAFVELGIKTGADKLKSTAQAFGLDSPPPTIPLQVAESTTGPIADAAALGMSSIGQRDVALTPLQNAQVAATIANDGIAMRPYLVDSLKGPDLTTIATTAPAQERRAVSPQVAATLTDLMVAAEQVTQQKGAIAGVQIASKTGTAEHGTDPRNTPPHAWYIAFAPASDPKVAVSVLIEDGGDRLSATGGALAAPIGRATIAAALREDS
>NZ_AP022579.1|WP_097926324.1|1324466_1325744_-|serine/threonine-protein-kinase
MSPRVGVTLSGRYRLQRLIATGGMGQVWEAVDSRLGRRVAVKVLKAEFSTDAEFVERFRAEARTVAMLNHPGIASVYDYGETELDGEGRTAYLVMELINGEPLNSVLKRTGRLSLRHALDMLEQTGRALQVAHTAGLVHRDVKPGNILITPTGQVKLTDFGIAKAVDAAPVTQTGMVMGTAQYIAPEQALGHDATAASDVYSLGVVGYESVSGKRPFTGDGALTVAMKHIKETPPPLPADLPPNVRELIEITLVKNPGMRYKSGGPFADAVAAVRSGRRPPRPNQAPTLGRAAPAAVPSAAQARAAADLSGRTPVTATRARPTAAAHRPAPPARRTFSSGQRALLWAAGVLGALAIVIAILIVLNAQDRKDQQQSPPPTVTDTVTETTPYQTPAALPDLAFHVIVPSAAGVDAPATSGAPEQILR
>NZ_AP022579.1|WP_077739721.1|1322598_1324470_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MTTPQHLSDRYELGEILGFGGMSEVHLARDTRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPNGPLPYIVMEYVDGVTLRDIVHGEGPIPPRRAIEIIADACQALNFSHQHGIVHRDVKPANIMISKNNAVKVMDFGIARALADTGNSVTQTAAVIGTAQYLSPEQARGETVDARSDVYSLGCVLYEILTGEPPFIGDSPVAVAYQHVREDPIPPSRRHTGISPELDAVVLKALAKNPDNRYQTAAEMRTDLIRVHSGEAPEAPKVLTDAERTSMMNSGPMLAQGGAAPTQNMVVPRPADRNASVARWLIAVAVLAVLTVVVTVAINMFDGRPRDVQVPDVSGQRSADAVAALQNRGFKTRTEPKTDNKVAPGVVIGTDPAANSMVAAGDEITVNVSGGPEQAQIPDVAGLTPAQARQKLKDAKFEKVKETTSPSTPEQKGKVLATNPPANQTAGIIYEVTLVVGSGPENTTVPDCKGQSADVCKQILTASGFTNTVVIDIDHTAPAGQVVDTEPTSGTSVPKDTPVQIHVSKGNQFVMPNLVGQFWDDAYQRLSALGWTGVLDKGPDVRDSGQRTNAVVTQSPPPGTGVSFGSKITLSFAS
>NZ_AP022579.1|WP_077739720.1|1321946_1322621_+|aminodeoxychorismate/anthranilate-synthase-component-II
MQVLVVDNYDSFVFNLVQYLGQLGVDAQVWRNDDDRLATEADLAKVAADFDGVLLSPGPGTPERAGATIPLVRACAAAGTPLLGVCLGHQAIGVAFGGTVDRAPELLHGKTSVVHHADTGVLKGLPDPFTATRYHSLTILPETVPDELEVIGQTDGGVIMAVRHRQLPIHGVQFHPESILTQGGHRMLANWLGVCGAAPEENLVATLEAEVARAVAAATTRNSA
>NZ_AP022579.1|WP_077739719.1|1321165_1321915_+|DUF881-domain-containing-protein
MDQPDRSPWRFGVPVVCLAAGLLLAATHGVSGGDEIRRSDAPRLVDLVREAQQSVDRLTAQRDSLSTEIDSHHGGSPGSHAALGAITRRSAELAADAGTVPMRGPGLVVTLNDAQRDAQGRFPRDASPDDLVVHQQDIQAVLNALWSAGAEGIQMQDQRIIATSAPRCVGNTLLLNGRTYSPPYVITAIGDASAMQAALAAAPNVTLYKQYVVRFGLGYTEEPRAEVELVGHTDPLRMRYAKPAGPVGY
>NZ_AP022579.1|WP_036443688.1|1320786_1321071_-|cell-division-protein-CrgA
MPKSKVRKKNDFTIKQVSRTPVKVKAGPSSVWFVALFIGLMLFGLLWLLVFQLAATNPVDTPSFLQWMADMGPWNYAVAFAFMISGLLLTMRWR
>NZ_AP022579.1|WP_077739718.1|1320214_1320631_-|PH-domain-containing-protein
MQQTHWGPPAAGVAGCGIGGLMMAIAAVTLITDPPGRVLAGIAGVGLLTFATLSWRARPKLAINQDGLTVAGWWSTRTYRRNEIRKIRITEFRRIARKVRLLEIDTVDDRLVVLTRWDLGTDPLDVLDALTEAGYAAP
>NZ_AP022579.1|WP_077739725.1|1332736_1333540_+|alpha/beta-hydrolase
MPSELTAPDGTELVLDATGDGPPVVFVHGSNGGLDSWDAVGEHLSGYRIVRYARRNHSPSGAGRSPNRYATEAADLRCVLNSVPVAAGEKVHVVGGSYGASVALHAALADADRIASLALFEPPLLLSGPHLLPVLERFRRFCGEGRYIEALAVFAREVARVPAEVIEGTPIEMPSEEFGRTVTRSAGADLEAMAHDGQDIDRWAAIELPVLLMQGGLSWSPLPEGMDRLAEVIPHAQRVTWPDQSHFATAMAPERVADALGRFFATV
>NZ_AP022579.1|WP_077739726.1|1333540_1334407_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MRGILLAGGSGTRLHPITTGVSKQLLPVYDKPLVYYPLSTLIMAGIRDILVITTPTDAPAFQRLLGDGSAFGVNLSYAAQQQPEGLAQAFMIGAEHIGTDSVALVLGDNVFYGPGLGTSLRRFQNVSGGAIFAYWVADPAAYGVVEFGPDGTALSLEEKPAVPKSQYAVPGLYFYDNDVIEIARSLRKSARGEYEITEINQTYLKQGRLSVEVLARGTAWLDTGTFDSLLDASDFVRTIERRQGLKIGVPEEIAWRAGYIDDAQLAARANELPKSGYGDYLLELLARK
>NZ_AP022579.1|WP_077739727.1|1334461_1335235_-|4,5-DOPA-dioxygenase-extradiol
MPAAFIGHGSPMNALESNRFTTAWRGFGQAVPRPRAILVISAHWYINATAVTAMPHPRTIHDFYGFPHELFEVRYPAPGLPELAEEVSDVVHPTWVGADVDSWGIDHGTWSVLVHAFPDASIPVVQLAINANEPASYHLQLGAKLAPLRERGVLIVGSGNIVHNLAGMDPAQPEDGFDWARRFDDAAREQLTHSPADVLTLEAHRDYAAAVPTPDHFIPMLYFAGLAGAAADSAGTVDTLVTGYAYGSLSMTSYLLR
>NZ_AP022579.1|WP_077739728.1|1335265_1335907_-|nitroreductase-family-protein
MSPARSTSNDVWEVMSTSRTIRRFTSEPVDDATLTRCLQAAAWAPSGANAQAWRFVVLGSAEQRAVVAKAAAQALAVIEPVYGMTRPAEDDTSRRARTNRATYELHDRAGEFTSVLFTQQRFPTASELLLGGSIFPAMQNFLLAARAQGLGACLTSWASYGGEQLLRAAVGVPEDWMLAGHVVVGWPRGSHGPVRRRPLSELVWLDHWDNPAT
>NZ_AP022579.1|WP_077741792.1|1336133_1338077_+|hypothetical-protein
MPDLYPVDDPDDADPRLAPLLAWRQQLVDSGAVAARSFKEAHLRLVLRSGRTEVEQIREMLPGSVAEHADEMARLLAELEAGAPVNPPVSPPEPAVPAADDVHAIAFRHDTARPGVVDLSWPDYQANGGVVLYRVVSADDRAPKSPENADLVAATPLSAASDDRAMTGPVRYYQVWVITGTSRADALSTRPVLYASGVLVAPVSDMTIREDNGLVMGKWTAPPAASSVHVYRIPADDAADESGIDESRYRILADGEHRTGFVDSGAARGMRYRYRVRCAVEVDGVVRLSEPADADIEVSAVLAAVTDISVDTGFDGETFDVSWAAPGAEVAIYLSQTGPSAGGVSTELPENALEQVGLTPDLRLRQPVTDQAQPDGSHRTLMAGVAWPRGWSRAYVTPVTILAGHAVLGRTVSAVRTGTIRDIELVEYCNKQVLTFEWPDGAAGVVVTLAATGHDPRAGLTGRSFEISLEDYEKYGGMHLTGALPVGGCSLHLAPVAFSGGRRVTGPVASIEYPGMLRLQYAVRIGRDPNGFPTTATVAVRSEHDVPGSPSFVLVNNPQRMPLSVHDGQPVDVAPLDAQGQLADQPSKQLRWTALTASGTGELWAANVSGLHGWIRLFLNIPDPAQLRTVALLDPPVQTLQLTTTVL
>NZ_AP022579.1|WP_077739729.1|1338073_1340533_+|hypothetical-protein
MTSRYGQLAYTSFDAVGSVGGWQVKETSGGLTPTETQALIAGVHTVFRTVGQVPDFPTPEQLEQGPRRLAYRHLGGGAGYWHTFPAGSDSTGRPGNVFAHVLLDRAPETHPRSRAIQRWRSSYWLQPYGAAAVARAVLPGVLPELGSAVTKDSVVAFALDTAHWRLATLFALLDAVAAALAGGPPVVLGVQSPDVAAQWIGLASFLMSPGTAASLSFSTFDRAEQVAPHNGQVLSAVPIEDVAAVEPGLVVISESETVSLGELGGDPHRTAGGHRIEVTRWSVMAQVVLLDVASARRVLDDIDTFSAQVRDDGLHPAWPMAMAVARHPEFADAQVEAHEVIAAHSPSGALVGSEAAHTIADVLSAVVGATTADAWRAVHELPDGAGAAFADATYIARAIADDAWLSQSGPIPLGPRMFHGKPIPSSLRKAIGPALENGRTQGPDRLLRVVDLLLRAGVADDRLWSALTDGVLPGLADPGVRGRIGAVDRLSLGTWLLRDGDAGGTAIDDDLLDWLADAATVPEPAELAGAQPWDPVWIRAALRGLRSQRHGPQLAGDLGAQLWWLRTTEPGHFAAAAAASVWNPSDLLLAIGADPLPRMAALRTLVGAADSDALHQLAGKVIEDNGDNVAVACAAVRHIEPRDWLHQRFLYTHQSAYVPLWDHVLAGLEPGSVHPDFAVRLLAFALLGVLAGQPYPQACNALATENGCGAEAVARVLPLVDGGELAPVTVVAVSLLRAAAAEATAHALDPVDQLAGVLAGQVAATMGGADAESVVVLMAQLSGDASEGTMRGYRKMVNRLVTRRAEQPSLAERLRGSRG
>NZ_AP022579.1|WP_077739730.1|1340534_1341692_+|hypothetical-protein
MSKCPRCFTPLSPNNHLWTLPAQAGGTRYRDDVASAYVGAPADCGPLYTWTRTPGYNGPPPPVSEASRALQGHAVEICPVCHFTLPEGFREGHAICIALAGARATGKSLYIAVLVKQLELLCERFGVVMEPVTRATVQNYATNYEGPLYVQRGLLPPTPTVHTQAPNQREPLVFSIGVWHGVRRFLVLRDVAGEDLENGDLRAPPFQFFGHADGVFFMFDPLRVKAIRDQLQDLLPPQPFSGGEPRSVLGNLLLAVNPGQPKLAVILSKFDVLRALRDVQGSEWALVMSNGGAAFLRDTSDGKRYDDVDGQLLDQEVRSLLVRLHGGSIVAGVENPAAGPRLTSRYFAVSALGHAPTGNRLHARGIAPFRCVDPVRWVTSQFGVL
>NZ_AP022579.1|WP_077739731.1|1341774_1342278_+|PPOX-class-F420-dependent-oxidoreductase
MGKNERTKIVMSDDEIAEFIERSRTATMATVLPNGRPHLVAMWYAVVDGEIWFETKAKSQKAVNLRRDPTITVMIEDGDTYDTLRGVSIDGTAEIVDDPETLLRVGISVWERYTGPYTDEMRPFVDQMMNNRIAVRVVPNRQRSWDHRKLGLGEMPLGGSTAQYLNA
>NZ_AP022579.1|WP_077739732.1|1342274_1343240_-|pirin-family-protein
MSNTDTAPAEVTCANSEFTGVLHPREVPLGGPRAMLVRRTLPQRDRSMIGAWCFADHYGPHDVRAAGRGMDVAPHPHTGLQTVSWLFEGLIEHRDSAGVHAMVRPGELNLITAGAGICHSEVSTPDTTLLHGVQLWVALPDSDRDTGRDFAHYAPRPRAVDGATIRVFLGELVDSASPVHTFTPLLGAQIDLDAGAVLTLDVDPSFEHGVLLDQGAIEVCGTTLAVADLAYQAPGRAQLQLANRSDGPARAILLGGPPFTEELVMWWNFVGRSHDDIATYRELWQANDARFGDVQGYEGPIARLPAPPLPNGRLKPRPRPS
>NZ_AP022579.1|WP_077739733.1|1343284_1343551_+|DivIVA-domain-containing-protein
MTRMTGGLTAEDVRSTEFSKPPLGKRGYDKKSVDDFLALVARRLDGRGHLGADDVRNIVFPKPPMFQRGYDEDDVDALLDAVVAQLER

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Crispr_ID: NZ_AP022579_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022579_3

2344005-2344151

Orphan

Consensus_repeat	Method
GGCGTCCATCGGGGCGGCCTCGGGAGCCGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022579_3

>merge|NZ_AP022579|3|2344005-2344151|CRISPRCasFinder
GTCGGCGATCGGGGCGGCCTCAGGAGCTGGGGCCAGCGCGGCGTCCATCGGGGCGGCCTCGGGAGCCGGGGCCTCAGGGGCCGGCGGCAGCGCTTCGGGGGCGGGCGGCAGCGGGGCGTCCATCGGGGCAGCCTCGGGAGCCGGGGC

>NZ_AP022579|3|3|2344005-2344151|CRISPRCasFinder
GTCGGCGATCGGGGCGGCCTCAGGAGCTGGGGC	CAGCGCGGCGTCCATCGGGGCGGCCTCGGGAGCCGGGGCCTCAGGGGCCGGCGGCAGCGCTTCGGGGGCGGGCGGCAGCGG
GGCGTCCATCGGGGCAGCCTCGGGAGCCGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022579.1\|WP_075919227.1\|2336668_2338318_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_AP022579.1\|WP_077740446.1\|2334395_2334740_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_AP022579.1\|WP_036447637.1\|2342223_2342421_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_075919232.1\|2343404_2343833_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|238385
NZ_AP022579.1\|WP_077740458.1\|2352259_2353690_-\|2-polyprenyl-6-methoxyphenol-hydroxylase-like-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NZ_AP022579.1\|WP_097926209.1\|2348957_2350622_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_AP022579.1\|WP_097926208.1\|2345314_2346388_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_AP022579.1\|WP_003884584.1\|2346939_2347350_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_AP022579.1\|WP_077740452.1\|2345050_2345314_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340452
NZ_AP022579.1\|WP_077740456.1\|2348448_2348961_-\|DUF2771-domain-containing-protein	unknown	unknown	gnl\|CDD\|378520
NZ_AP022579.1\|WP_065460009.1\|2346384_2346777_-\|YccF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236975
NZ_AP022579.1\|WP_077740447.1\|2336324_2336672_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319903
NZ_AP022579.1\|WP_165777804.1\|2338389_2339817_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|223700
NZ_AP022579.1\|WP_077740445.1\|2333583_2334306_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077740450.1\|2342423_2342897_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_AP022579.1\|WP_077740451.1\|2342893_2343379_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NZ_AP022579.1\|WP_077740457.1\|2351516_2352263_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP022579.1\|WP_077740454.1\|2347435_2348452_+\|glutathione-dependent-reductase	unknown	unknown	gnl\|CDD\|223512
NZ_AP022579.1\|WP_077741894.1\|2350709_2351504_+\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
NZ_AP022579.1\|WP_097926451.1\|2339870_2342129_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|379300

Protein	Function_ID	Function_description	E-value
NZ_AP022579.1\|WP_075919227.1\|2336668_2338318_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	2.33896e-119
NZ_AP022579.1\|WP_077740446.1\|2334395_2334740_+\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	1.97852e-21
NZ_AP022579.1\|WP_165777804.1\|2338389_2339817_-\|esterase-family-protein	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	7.63995e-15
NZ_AP022579.1\|WP_075919232.1\|2343404_2343833_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	2.74985e-42
NZ_AP022579.1\|WP_077740458.1\|2352259_2353690_-\|2-polyprenyl-6-methoxyphenol-hydroxylase-like-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.13125e-06
NZ_AP022579.1\|WP_097926209.1\|2348957_2350622_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.18407e-27
NZ_AP022579.1\|WP_097926208.1\|2345314_2346388_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	6.53053e-176
NZ_AP022579.1\|WP_003884584.1\|2346939_2347350_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.8819e-25
NZ_AP022579.1\|WP_077740452.1\|2345050_2345314_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	7.97185e-14
NZ_AP022579.1\|WP_077740456.1\|2348448_2348961_-\|DUF2771-domain-containing-protein	gnl\|CDD\|378520	pfam10969, DUF2771, Protein of unknown function (DUF2771). This bacterial family of proteins has no known function.	1.64289e-61
NZ_AP022579.1\|WP_065460009.1\|2346384_2346777_-\|YccF-domain-containing-protein	gnl\|CDD\|236975	PRK11770, PRK11770, YccF domain-containing protein.	1.08427e-53
NZ_AP022579.1\|WP_077740447.1\|2336324_2336672_-\|glyoxalase	gnl\|CDD\|319903	cd07238, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.27232e-35
NZ_AP022579.1\|WP_097926451.1\|2339870_2342129_-\|DNA-binding-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	3.9444e-39
NZ_AP022579.1\|WP_077740450.1\|2342423_2342897_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	5.54541e-86
NZ_AP022579.1\|WP_077740451.1\|2342893_2343379_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	6.34581e-59
NZ_AP022579.1\|WP_077740457.1\|2351516_2352263_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.8759e-12
NZ_AP022579.1\|WP_077740454.1\|2347435_2348452_+\|glutathione-dependent-reductase	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.9303e-142
NZ_AP022579.1\|WP_077741894.1\|2350709_2351504_+\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	8.10298e-108

>NZ_AP022579.1|WP_075919232.1|2343404_2343833_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MSATVVRVELTETPISLTEYEALVAHEAAGAVVGFSGVVRDHDGGRSVTRLDYSAHPNALQTLQEVAAEVAAQATGVRAIAVSHRIGTLHIGDAALVAAVAADHRRAAFETCAHLVDTVKERLPVWKHQYFSDGTDEWVGSA
>NZ_AP022579.1|WP_077740451.1|2342893_2343379_+|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MTRSARVIIASTRAAAGVYDDRTGPLIVSWLSDRGYDVTEQVVVADGHAVGDALRAALSERVDLIITSGGTGISPTDATPESTMSVLDYQIPGLADAIRRAGAHKVPTAVLSRGVCGVAGRTLIVNLPGSPGGVKDGLGVLAGVLEHALDQLSGMDHPSHR
>NZ_AP022579.1|WP_077740450.1|2342423_2342897_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MGLSHLDESGAAHMVDVSAKDVTKRTASAVGTLHTRPDVVALIASGGLPKGDALATARVAGIMAAKRTPELIPLCHQLALTGVDVDFDIRDAAVAITATVRSTDRTGVEMEALTAVSVAALTLYDMIKAVDPAARIDDIKVVRKEGGKTGLWERTTQ
>NZ_AP022579.1|WP_036447637.1|2342223_2342421_+|hypothetical-protein
MWSVADNKKNHYVDNGWPVLSDGDDHAVSELATDRTGALSPFGDVTFPLPAEELPFIQSATVVNR
>NZ_AP022579.1|WP_097926451.1|2339870_2342129_-|DNA-binding-protein
MTAAQTPGFPLGAWLSDLDDKGLIRLLELRPDLSQPPPGTIAALAARATSRQSVKAATDSLDFLRLAVLDALLVLHADTRPVPVSEVSDLLGERVGADDVTTALEDLRERALVWGDATVRVAPEAAAGLPWFVGQAAVEVSDRGADEIAALLEGLDEAQSDLLARLLEGSPMGRTRDAAPGTPPDRPVPRLVEAGLLRRIDDETVILPRVVGQVMRGEAPGPVELTAPALETTSTTPADVDAVAAGAAIDLLREIDLIIETLGSTPVPELRNGGLGVRDVKRLAKTTGIDEPRLGLLLELAAGAGLIAAGMPEPDPGDGTGPYWAPTVAADRFVESSTAARWHLLAATWLDLPARPALIGSRGPDNKPFAALSDSLYSTAAPLDRRLMLSVLAELPAGTGVDGPEAARAMVWRRPRWAARLQPATVSGLLAEAHSLGMVGRGAISTPARGLLAGDPDEDVLAAMEKALPKPLDHFLLQADLTVIVPGPLERDLAEHLAEVATVESAGAAMVYRISEPSIRRALDAGRTASELHTLFEKHSKTPVPQGLTYLIDDVARRHGQLRVGMATSFLRCEDPALLAQAVASPGADRLELRLLAPTVAVSQAPIADVLTVLREAGFAPAAEDSTGTVVDIRARGSRVVAPTRRRVYRPPTPPTAQTLGAIVAVLRKVASGPFASVRLDPAMAITQLQDAAINQTSVVIGYVDPAGVATQRVVSPINVRGGQLTAFDPAAGRVREFAIHRVTSVVSADTD
>NZ_AP022579.1|WP_165777804.1|2338389_2339817_-|esterase-family-protein
MLMAADQVPPAYRGVSLLHGWLPPALQALAAVALLAAIGWRNRRWRMILLPCAIAVGVGLTVWARWFVRSQGLAGDPAPAALWIWIGLTGLAVAVLALGWRGSHWRRRTAAVAAVPLCLLSVGVAVNLWVGYFPTVTALWNEVTAGPLPGETDLATALDQRRRGDIPSHGELVSVTIPPDESGFKHRDELVYLPPAWFAASAPQLPVVMMIAGEFNTPADWARSGNAIATIDNFAADHGGTTPVFVFVDVGGSFNNDTECVNGPRGNVADHLTKDVPPFMTGNFGVRDAGWGVVGWSMGGTCAVDLTVMHPELFSSFVDIAGDIGPNAGTKDQTIARLYGGDAAAWSTYDPATVIDEHGRYQGVSGWFVISSDAPKKRGSHPANPDAVGLGGQDAGGNPGDQTEAAHTLCDLGRRHGISCAITAVPGKHDWPFAEQVLTTTLPWLAGAVGTPGVPQVPLPSGGAPPPAPTGAAPR
>NZ_AP022579.1|WP_075919227.1|2336668_2338318_-|DEAD/DEAH-box-helicase
MTDGPLIVQSDKTVLLEVDHEQAGAARAAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYPVPQPLLVDIVDTMARYGRLQLIKHPAHGLTLVSLDRAVLEEVLRNKKIAPMLGARIDDDTVIVHNSERGRVKQMLLKIGWPAEDLAGYVDGEAHPIELAQDGWQLRDYQEMAADSFWAGGSGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQWKRELVARTSLTEDEIGEYSGEKKEIRPVTIATYQVITRRTKGEYKHLELFDSRDWGLIIYDEVHLLPAPVFRMTADLQSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAPAECIEVRVTMTDNERMLYATAEPEERYKLCSTVHTKIAVVRSILERHPGEPTLVIGAYLDQLEELGEELNAPVIQGSTKNSEREALFDAFRRGEISTLVVSKVANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKASGGGAVFYSVVSRDSLDAEYAAHRQRFLAEQGYGYVIKDADDLLGPAI
>NZ_AP022579.1|WP_077740447.1|2336324_2336672_-|glyoxalase
MTVLRVMPVLTVSDLATTAAVYTQTLGLTEVMNHGWIVTLADAELRHQVSLMTKDATAPVNPSVSIEVDDVDAAYAAAVEAGVEIVHPLSDEEWGVRRFFFADAAGNVVNVLTHR
>NZ_AP022579.1|WP_077740446.1|2334395_2334740_+|cupin-domain-containing-protein
MEKISLTAIARQQLASARTANSGRSAHTVYGGHEHQLRQTLIAMTAGTGLDEHESPGEATLQVIEGRVKLANSEASWEGSPGDHIVIPRTRHSLHALEDSVVLLTVVKAMGPHT
>NZ_AP022579.1|WP_077740445.1|2333583_2334306_+|hypothetical-protein
MKLLDEVIAAYGGLDRWNEIESIRIHQTIGGALWKIKGVDGILDESIVEIRPREQRAWHSPLPRPGFRSSYSPARVQIETDEESPRVVETLSSPRESFAGHTLETPWTHLQLAYFAGYAMWTYLSEPYSLTFPGVETEELGAWREDGETWRRLGVRYPDSIATHSADQTLYVDSDGLIRRRDYRVDIAADSPAAHYSRNHLMVDGIVLPMNRIVYVADDAGYPLRDMVTVTIDIDDVTVT
>NZ_AP022579.1|WP_077740452.1|2345050_2345314_-|MoaD/ThiS-family-protein
MTEHTVAVTVRYFAAAAAAAGVDTETLDLAKDSTIATLVEHLSGRDAELARVLKRCSYLSDGMAVRDMDKPVSTHQTIDVLPPFAGG
>NZ_AP022579.1|WP_097926208.1|2345314_2346388_-|GTP-3',8-cyclase-MoaA
MTLTPLGLPSIHRPAPPLGPAPTTGPLVDTYGRAATDLRVSLTDKCNLRCTYCMPAEGLDWLPGEALLSAEELSRLLRIAVTRLGITSVRFTGGEPLVTRHLEDVVAAAAALQPRPEITLTTNGIGLARRAAGLKQAGLNRINVSLDSVDATHFARITRRDRLADVLDGLAAAKAAGLEPVKVNAVLDPISGLDDVVNLLGYCLDHGYQLRIIEQMPLDAGHTWQRGTVIDAEAILTTLGRHFDLRPDPKPRGSAPAELWQVSASTDHPAGTVGVIASVSHAFCSACDRTRLTADGQVRSCLFSTEESDLRGLLRGGADDDAIEAAWRTAMWAKPAGHGINDPDFVQPVRPMSAIGG
>NZ_AP022579.1|WP_065460009.1|2346384_2346777_-|YccF-domain-containing-protein
MRVILNIIWLIFGGLWLALGYLLAALICFVLIITIPFGFASLRIASYALWPFGRTIVDKPGTRPGALVGNIIWIILFGWWLALGHLVSAVAMAVTIIGIPLALADLKMIPVSLVPLGKDIVPVDSLKAAV
>NZ_AP022579.1|WP_003884584.1|2346939_2347350_+|cold-shock-protein
MPTGKVKWYDAEKGFGFVSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVAAGRRGPQALSLKLIDPPPSLSRARREAERPEHKHTPDELHGMVSDMITLLEDIVQPELRKGRYPDRKVARRVSEVVKAVAQELDA
>NZ_AP022579.1|WP_077740454.1|2347435_2348452_+|glutathione-dependent-reductase
MTQGSYVATGSGEFNRDTNYITTRITADGRDGYPVEPGRYRLIVARACPWANRTIIVRRLLGLESVLSIGFCGPTHDARSWTFDLDPDGLDPELKIPRLQDAYFKRDPSYPKGITVPAIVEVATGAVVTNDFAQMTLDFSTEWTAYQREGAPQLYPEPLRDEIDTVAKRIYTEVNNGVYRCGFAGSQEAYDAAYDRLFTALDWLTDRLSTQRYLVGDTITEADVRLFTTLARFDPVYHGHFKCNRAKLAEMDVLWAYARDLFQTPGFGDTIDFVQIKQHYYIVHSDINPTQIVPKGPDLANWLTPHGRESLGGRPFGDGTPPGPTPEGERVPAGHSAG
>NZ_AP022579.1|WP_077740456.1|2348448_2348961_-|DUF2771-domain-containing-protein
MKRALAALAAVVVLAIAGTTAGVWRLHSSHGDQLPEISAYSHGHAVRVGPFQYCEVLNLDDCKEPRDAGELRVTKESPVQLSVPSSVARAPWRLLRVYENPIDTTVTYYAPKTTLAVTIPTVDPNRGRLTGLAVQMLTLVQDQNGEEFALPHAEWSVSTVWPDRQPADAR
>NZ_AP022579.1|WP_097926209.1|2348957_2350622_-|MFS-transporter
MTYYPPRPPADHGAEHPGMANYPSDETPRRPRRHSVPSSNRWLPPLDEQHTAAHSTPDDAAQPRGVGSAAGERVTVTRAAAARSREMGSRMYGFVHRAATADGADKSGLTALTWPVVANFAVDAAMAVALANTLFFAAASGESKSKVALYLLITIAPFAVIAPLIGPALDRLQHGRRMALAASFALRTVLIIVLIANYDGATGSYPSWVLYPCALGMMVLSKSFSVLRSAVTPRVLPPSIDLVRVNSRLTTFGLLGGTVVGGGIAAGAEYLFNVAELPGALYVVAAVSVAGAVLSMRIPKWVEVTEGEVPTTLSYHGQSDGHGELRRHPGKPKAERQPLGRNTITALWGNCTIKVMVGFLFLYPAFVAKSHEASGWEQLLILGLIGAAAGIGNFGGNIAAARLKLGHPAQLVVRAAAAVTAVALATALTGNLLVAAGATLVTSAASAIAKASLDASLQDDLPEASRASAFGRSESVLQLAWVAGGATGVLIYTDLTVGFTTITAVLILGLAQTIVSYRGESLIPGLGGNRPVHAAPEGGSHSAAAPTTAQWESR
>NZ_AP022579.1|WP_077741894.1|2350709_2351504_+|DUF3027-domain-containing-protein
MESVTEPAEQACESDRETGPAAPSPEQEALLSGAAEQARAALIEFSGEGAVGEYLGVSIEDAASATHRFLADLPGYRGWQWAVVVAAYPGADHATISELVLVPGPTALLAPQWVPWQDRIRPGDLGPGDLLAPPPNDPRLVPGYVATGDPLIDDAPLGLGLGRRQVLSEWGRAQAAQRWHDGEYGPGSAMARSTRRVCRDCGFYLPLGGALGAMFGVCANDLSADGHVVEAEYGCGAHSDTPQPPGTGSPMYEPYDDGVLDTAE
>NZ_AP022579.1|WP_077740457.1|2351516_2352263_-|alpha/beta-hydrolase
MTIVLVHGNPETDAIWGPLVDALGRDDVTRLSPPGFGAPLPDGFPATYLAYRDWLEAELETIAEPVDLLGHDWGGGHVMNLVMHRPELVRSWASDVVGLFDPDYTWHDLAQVWQTPDEGEQLVETMLGGSVADRAAQMAALDIPLDVATSIASAQGPDMGRAILALYRSARQPAMAEAGRGLDRAQARPGLSLLATEDPYIGSAEIRQRAAERAGARTEVLEGLGHWWMVQDPERAAEVLTRFWDSVG
>NZ_AP022579.1|WP_077740458.1|2352259_2353690_-|2-polyprenyl-6-methoxyphenol-hydroxylase-like-oxidoreductase
MVKLGEHALVLGGSISGLFAARVLSDFYDTVTVVERDELSDDPVHRRGVPQGRHVHALLAQGARTTRELFPGVLDDVVAEGAPVWDDGELSRFHICYGGHLMLRSGKAPGTPADYQEMALYQPSRPLLECHIRRRLAAIDNVTILGGQDVAELTATADRERITGARVVDRATGAERELTADLTMDARGRAAHTPACLEQLGYGRPVEDRIVMHTTYVSQAMRIPPGALEEMLVIISPVPGRPTGMFLFNYENDVSIFTAHGMLGHEPPRDLAGMISYVEEFAPPHLVAALRAGEPVAPVVQHRLPCSQWRRYDKMRRFPAGLLVCGDAMCSFNPIYGQGMSVAAMDAVALRESLRRGSADLPRRYFRAAAKSIGLAWGLAAGSDLAFPEVEGHRTRSMRLTGRYVERILAACETDADVHAQFFRVTGLVDPPARLFHPTFVYRVARANHRRRQRGSQPRQEPFAAPELARRDGMPT

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Crispr_ID: NZ_AP022579_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022579_4

2815516-2815601

Orphan

Consensus_repeat	Method
TCACGAAGGTCGGCAGCGATCCGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022579_4

>merge|NZ_AP022579|4|2815516-2815601|CRISPRCasFinder
TCACGAAGGTCGGCAGCGATCCGGTGGCGCCGGCCAAACCTGGCGGCAACAAAGCCCCCTTCACCAAGGTCGGCAGCGATCCGGTG

>NZ_AP022579|4|4|2815516-2815601|CRISPRCasFinder
TCACGAAGGTCGGCAGCGATCCGGTG	GCGCCGGCCAAACCTGGCGGCAACAAAGCCCCCT
TCACCAAGGTCGGCAGCGATCCGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022579.1\|WP_162564008.1\|2822829_2823276_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_AP022579.1\|WP_077742930.1\|2819475_2820789_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224787
NZ_AP022579.1\|WP_077742928.1\|2816019_2816334_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077742923.1\|2811367_2811793_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_055116753.1\|2809051_2809843_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237825
NZ_AP022579.1\|WP_077743252.1\|2807731_2808106_+\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238404
NZ_AP022579.1\|WP_077742925.1\|2812402_2812975_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077742926.1\|2813953_2815183_+\|DUF885-domain-containing-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077743254.1\|2818447_2819275_+\|acyl-ACP-desaturase	unknown	unknown	gnl\|CDD\|153109
NZ_AP022579.1\|WP_077742929.1\|2816905_2818369_+\|glycine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|184161
NZ_AP022579.1\|WP_077742931.1\|2820870_2821755_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_AP022579.1\|WP_077742935.1\|2824015_2824450_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NZ_AP022579.1\|WP_077742922.1\|2809858_2811232_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077743253.1\|2816377_2816881_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077742924.1\|2811918_2812332_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022579.1\|WP_077742934.1\|2823286_2823934_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_AP022579.1\|WP_097926299.1\|2805690_2807721_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224250
NZ_AP022579.1\|WP_070185470.1\|2812984_2813923_-\|type-I-pantothenate-kinase	unknown	unknown	gnl\|CDD\|235466
NZ_AP022579.1\|WP_077742921.1\|2808251_2808995_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|273425
NZ_AP022579.1\|WP_077742932.1\|2821825_2822809_+\|NAD(P)H-nitroreductase	unknown	unknown	gnl\|CDD\|236122

Protein	Function_ID	Function_description	E-value
NZ_AP022579.1\|WP_162564008.1\|2822829_2823276_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	0.000192401
NZ_AP022579.1\|WP_077742934.1\|2823286_2823934_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.56405e-66
NZ_AP022579.1\|WP_077742935.1\|2824015_2824450_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	1.53673e-23
NZ_AP022579.1\|WP_055116753.1\|2809051_2809843_+\|isoprenyl-transferase	gnl\|CDD\|237825	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional.	4.00531e-123
NZ_AP022579.1\|WP_077743252.1\|2807731_2808106_+\|SnoaL-like-domain-containing-protein	gnl\|CDD\|238404	cd00781, ketosteroid_isomerase, ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.	2.65775e-32
NZ_AP022579.1\|WP_070185470.1\|2812984_2813923_-\|type-I-pantothenate-kinase	gnl\|CDD\|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0
NZ_AP022579.1\|WP_077743254.1\|2818447_2819275_+\|acyl-ACP-desaturase	gnl\|CDD\|153109	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 10 to yield oleic acid in the ACP-bound form. The enzymatic reaction requires molecular oxygen, NAD(P)H, NAD(P)H ferredoxin oxido-reductase and ferredoxin. The enzyme is active in the homodimeric form; the monomer consists mainly of alpha-helices with the catalytic diiron center buried within a four-helix bundle. Integral membrane fatty acid desaturases that introduce double bonds into fatty acid chains, acyl-CoA desaturases of animals, yeasts, and fungi, and acyl-lipid desaturases of cyanobacteria and higher plants, are distinct from soluble acyl-ACP desaturases, lack diiron centers, and are not included in this CD.	2.88083e-45
NZ_AP022579.1\|WP_077742929.1\|2816905_2818369_+\|glycine-hydroxymethyltransferase	gnl\|CDD\|184161	PRK13580, PRK13580, glycine hydroxymethyltransferase.	0
NZ_AP022579.1\|WP_077742930.1\|2819475_2820789_+\|PhoH-family-protein	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0
NZ_AP022579.1\|WP_097926299.1\|2805690_2807721_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|224250	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones].	0
NZ_AP022579.1\|WP_077742931.1\|2820870_2821755_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	3.5693e-65
NZ_AP022579.1\|WP_077742921.1\|2808251_2808995_-\|hemolysin-III-family-protein	gnl\|CDD\|273425	TIGR01065, Hypothetical_UPF0073_protein_yqfA., channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.	1.01425e-65
NZ_AP022579.1\|WP_077742932.1\|2821825_2822809_+\|NAD(P)H-nitroreductase	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	1.09338e-19

>NZ_AP022579.1|WP_077742926.1|2813953_2815183_+|DUF885-domain-containing-protein
MANGMDLGSGSGTDSADFVREYLLLGLRFDRVEDGYVDSFTGDPQLRRTVENEPPPDPADLARRADRLLTQIPDDLDRDRAEYIAAHLRALNCAGRKFAGEQVGFVDEVQAYFDVRISKGDPEKYQQAHAKLDDALGGSGSLTERIQAHRSGDEIPPARLEECIHAFSSALRDKVRAAYPLPETETITYEVVTDKPWSGFNYYLGDYKSTVAVNADLKQQMANLPRLVAHESYPGHHTEHCRKEAGLVARDNQLEQTIFLVNTPQCLMAEGLADLALYAIVGPGWGAWAADIYADLGLRFDGERAEAISEAMAGLADVRQDAALMLHDEHRDIDEVVAFLKRWLLVGDDRARQTLRFLSSPLWRAYTSTYIEGYRLLRGWLDARPDGVTLTQRFGRLLDEPLIPSTLRA
>NZ_AP022579.1|WP_070185470.1|2812984_2813923_-|type-I-pantothenate-kinase
MPRPSEPSPYVEFDRSQWRALRMSTPLKLTEDELLRLRGMGEKLDILEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFVIGVAGSVAVGKSTTARVLQALLARWGHHPRVDLVTTDGFLYPNKELNRRNLMHRKGFPESYDRRGLMRFVTAVKSGADEVCAPVYSHLLYDIVPGEQQVVRHPDILILEGLNVLQTGPALMVSDLFDFSVYVDARIEDIEQWYISRFLTMRSTAFADPASHFHHYSTLTDEQAVFAARDIWHSINRPNLIENILPTRPRATLVLRKDADHSINRLRLRKL
>NZ_AP022579.1|WP_077742925.1|2812402_2812975_+|hypothetical-protein
MELHWAPEHTERLRTVRVGWDGTEVGAPCFPPDWETEPADLDLLRIATGFGACAAGEYPYKRPPADHEYSFFVEKLPESGPFGFTDQHRTLLAHMSWELSDPYVDEDVPGCDPKRPYGDFTFYQLEMALHLGLIPPKKPEGEDPMTPELVTAMTELHQRMQPALQVFLHHFVIADGQRFVGNEWGGWERA
>NZ_AP022579.1|WP_077742924.1|2811918_2812332_+|hypothetical-protein
MSAITAGSYAGTGKSTDSLLRLAMRLDAVLVGISGIALLAAAGWFADLTGLPKSVEYGVGIFSVVYGIAVFALAGIERVRPAGIGTVIANAACTVIALVAVFTMSLTTAGVVAVIGTGIYTLAMAELQYVGVKRIPA
>NZ_AP022579.1|WP_077742923.1|2811367_2811793_+|hypothetical-protein
MTAILNRPHTDSTAGAATDDFLLRFALRADATVCAGVGLLVAMAADQLARIAGLSATAGWFVGAALVGYGALLYVLAGASRVRRVGIAVLAGNVSFAIVTSVAIATGWLALTGTGDELVLGFVGATVVLAWLQYRGVRRLA
>NZ_AP022579.1|WP_077742922.1|2809858_2811232_+|hypothetical-protein
MAALSAVVFTLSWWLGLYLLARDPRKPVLVLAAIGLTSFAAVVALDAVRLVTGSDVLSRIEIYLVALPGIAWFAVMVELARPADTFRSRAGEIAAIFAVAVLAFAGAGLAGSVDGPLRTGHWVMFAVISLSSLGAMIKAVVGGAKPGSVVGFIIVATLFFALGNAILVIPLGLVPSWLALASTGFDVALLGVAVAIWDAFDEGQALRADMRRSIIGTLVIAVPFAAQALIGMTVLDAGTGRTVMTILLFTSLAVAVAVEVLADPLAGLFDRLAFSRSPDLRADREALRQTEAALPLRSDHPLGGIDEEAFARLTRRALGHYGDLSKLVANPLTALPAIDTRLAQRGAPDQPLERANELKALLADRIAALKPRDGGDFGTTEQWRHYNSLYFPYVVGVRAYAQNATAAGLDPVARQAWQWFVTEVPQRSLHNWQNAAARVIAADLRGDLAPVAGSAGR
>NZ_AP022579.1|WP_055116753.1|2809051_2809843_+|isoprenyl-transferase
MDIIPPRLKEPAYRLYEMRLRQELAQSRSELPRHIAVLCDGNRRWARDAGYDDVSIGYRMGAAKIAEMLRWCQAAGIEMTTVYLLSTENLQRDPDELSALLEIITDVVEEICAPTNTWTVRTVGDLELLGEEPARRLREAVESTNGRGGKFHVNVAVAYGGRQEIVDAVRSLLSKELANGATAEQLVEAVTVDGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAYWPAFRRVDFLRALRDYTARHRRFGK
>NZ_AP022579.1|WP_077742921.1|2808251_2808995_-|hemolysin-III-family-protein
MTAPTGSTKPYRSAAALNRPAEDLPEAVAEGVAQFLGRPRARGWIHVYSAVVAFIAGAALVSVSWSLESTRAGLATLLYTFTIVAMFAVSGTYHRVTWKSANARKWMKRLDHSMIFIFIAGSYTPFALLALPESKGMVLFWIVWGGAIAGVLLKMFWPSAPRWLGVPLYILLGWVAAWFIGPIMHGAGVAAVVLLIVGGALYSIGGVLYALKWPNPWPTTFGHHEFFHACTAVAAICHYIAMWFAVF
>NZ_AP022579.1|WP_077743252.1|2807731_2808106_+|SnoaL-like-domain-containing-protein
MPNAEQITQTVNRYLELVGSGTADDIAELYADDATVEDPVGGGEVHIGRAAIRGFYANVENVKGKAELVTLRVAGHEAAFHFRLTLDFGSSSMRIEPIDVMVFNGEGKITSMKAYWSQADAVTL
>NZ_AP022579.1|WP_097926299.1|2805690_2807721_+|thioredoxin-domain-containing-protein
MTTRVSHVSRVAANTLGGSTSPYLRQHADNPVHWREWTPEALAEAASRDVPILLSIGYAACHWCHVMAHESFEDTDVAAVLNDGFVCIKVDREERPDLDAVYMNATVALTGQGGWPMTCFLTPDGRPFFCGTYYPKLGFLQLLDAVAETWRDRRDEVERASDQIATELRSMSAGLPGGGAPVGPELCDHAVAAVLHDEDETYGGFGGAPKFPPSALLEGLLRHHERTGSGPALTAVRRTCTAMARGGIYDQLAGGFARYSVDPHWVVPHFEKMLYDNALLLRAYAHLARRTGDPLARRVAGETAAFIVSDLGAGGMFTSSLDADAGGREGLTYVWTPAELRSVLGEDDGAWAASLFGVTASGTFEQGASVLQLHRDPDDAARFESVRARLSAARARRPQPARDDKVVTAWNGLAITAMAEASVALEQPELLSAALDCARRLLDLHMVDGRLRRASLGGRVGESAAILEDHAALATALLTLYQLTGFGLSEAVGLLDIALDHFADPDQPGRWFDTADDAERLMVRPADPIDGATPAGASLIAEALQAAGYLTGSARHVDAAQATLSSATPILARAARSGGHWLAVAEAQVRGPVQIAVAGDPASPLLAAARRLAPGGALVVGGHVDSSELLRGRDRVDGADAAYVCRGTVCDLPVTTVGDLAVSLGGDPADGASDAV
>NZ_AP022579.1|WP_077742928.1|2816019_2816334_+|hypothetical-protein
MAATGKSSNRIKLMAGVAVVAGSLAGLAGPAVMANADPDPNPGPFVSVNGEEVTIPWPGGAWAGWDWRKGWPGGAWAGHDWSKGWPGGGFANGKAGGAWNHTAD
>NZ_AP022579.1|WP_077743253.1|2816377_2816881_+|hypothetical-protein
MSALRRDIPAIATPVNIALVLWMAIGRGLFVPLGWMTVFVVLASPFLLISLAATTRLMRRLPERELTSGQARAQVVVWSAMFGFGLFGADGGDSGSFPSILMKLLGERPWTETVSLLLWWGCVFVGPAAWFVLLTKLTRGVAVAPPAQPPYPYPGYPPGQPGPGPST
>NZ_AP022579.1|WP_077742929.1|2816905_2818369_+|glycine-hydroxymethyltransferase
MAADSSSTLPAASGADYADTSSAAYAAALQVIESVEPRVAAATRKELADQRDSLKLIASENYASPAVLLTMGTWFSDKYAEGTVGHRFYAGCQNVDTVEALAAEHARELFGAPYAYVQPHSGIDANLVAFWAILATRVEAPELANLGAKHVNDLSEADWETLRNKLGNQRLLGMSLDAGGHLTHGFRPNISGKMFHQHSYGTNPETGFLDYDAVAAAAREFKPLILVAGYSAYPRRVNFAKMREIADEVGATLMVDMAHFAGLVAGKVFTGDEDPVPHAHVTTTTTHKSLRGPRGGMVLATEEFAPAVDKGCPMVLGGPLSHVMAAKAVALAEARQPAFQTYAQQVADNAQALADGFVKRDAGLVTGGTDNHIVLLDVRSFGLTGRQAESALLDAGVVTNRNSVPADPNGAWYTSGIRLGTPALTSRGFGADDFDRVAELIVDVLSNTQPEGTSKAKYKLADGTAERVHAASAELLDANPLYPGLTL
>NZ_AP022579.1|WP_077743254.1|2818447_2819275_+|acyl-ACP-desaturase
MAQKPVANALTLELEPVVEAELRRHLDTEDLWYAHDYVPFDQGENFAFLGGQDWDPSQVTLPKNVTDALEILLITKDNLSGYHRELVEHFILEDKWGRFLGRWTAEEHLHAVALRNYLVVTREIDPTANEDVRVEHVMKGYRADSYSQIETLVFMAFFERAHAVFTRNLRAQIAEPVLGAMVDRIVLDEERHELFFANLVTHLLGTHRDETVAAIAARARELDVIGADIDAYQDKVALVAEAGIFDKAALAQVISDRITAWGLAGEPQLQEFINT
>NZ_AP022579.1|WP_077742930.1|2819475_2820789_+|PhoH-family-protein
MTDTPVRTYVLDTSVLLSDPWACTRFAEHEVVVPLVVISELEAKRHHHELGWFARQALRMFDDLRLEHGRLDQPIPVGAEGGTLQVELNHIDPSVLPTGFRTETNDTRILACAANLAAEGKHVTLVSKDIPLRVKAGAVGLAADEYHAQDVVVSGWTGMTEFDVAAEDIDTLFADGEIDLAEARDLPCHTGIRLLGGSSSALGRVNAEKRVQLVRGDREVFGLRGRSAEQRVALDLLLDESVGIVSLGGKAGTGKSALALCAGLEAVLERRTQRKVVVFRPLYAVGGQDLGYLPGSESEKMGPWAQAVFDTLEGLASPAVLEEVLARGMLEVLPLTHIRGRSLHDSFVIVDEAQSLERNVLLTVLSRLGAGSRVVLTHDVAQRDNLRVGRHDGVAAVIEKLKGHPLFAHITLQRSERSPIAALVTEMLEEFSPGALP
>NZ_AP022579.1|WP_077742931.1|2820870_2821755_+|polysaccharide-deacetylase-family-protein
MARLPNSQAWRWTAVGVTAAVVVVVVGVLTGHIYRDGPDDVDCSKERCVALTFDDGPGPYTDRLLQILKDNDAKATFFEIGNKVAANPEGAKRVVEAGMELGSHTWEHPNMTTIPPGEIPAQFSKASDAIEAATGQRPKLVRTAGGLINDQVLAEARKQGLADINWDVIPFDWANDANIAATRYMLMTQIKPNSVVLFHDTYSSTVDLVYQFIPVLKANGYHLVTVSHMLGEREPGTSYGSRENGPPVPPAEALKDIPPEEIPSLPATPSPAPMPNFPITDIPGANSGGPNNGA
>NZ_AP022579.1|WP_077742932.1|2821825_2822809_+|NAD(P)H-nitroreductase
MPDTMFDTATLTRAVQLASRAPSLHNTQPWRLVAEGDCLHLHLDPHRVVTATDRSAREAVISCGVLLDHLRVAMAAAGWTTIVDRFPNPNDLDHLATLQFSPMAFVTEAHRRRADAILARRTDRLPMTAYADWDAFEVLLRARLAEGPVHLDVLAEDMRSTVAEAAELTESLRLYDSGYHAELAWWTTPFATEDGIPQSSLVSASESERVGVARTFPVTAHSDRRPTVGDDSATLVVLSTDGYSRADALDAGEALSALLLECTLSGLSTCPVSHVTELHASRDIIGTLIGRDACPQLLVRIGIAPTITDAPPPTPRRAVEAFLTFES
>NZ_AP022579.1|WP_162564008.1|2822829_2823276_+|universal-stress-protein
MTDTLIDPTSVTTAAGAAVVVEADGRTASNDALHSAIEEALRRGAPLRVVTTWGARHREMYDASAVAERDRLSEAQLQRRLTRALKRSPELDVQSIDGYDSVAEYLTTYPESAQLLVVGADHPDSAELQTALAGSGCAVLTCDRRHRL
>NZ_AP022579.1|WP_077742934.1|2823286_2823934_+|response-regulator-transcription-factor
MIRVFLVDDHEVVRRGLIDLLSADPELDVIGEADSVAQALARVPVLVPDVAVLDVRLPDGNGIELCRELLSRMPDLRCLMLTSFTSDEAMLDAILAGASGYVVKDIKGMELAQAIKDVGAGKSLLDNRAATALMAKLRGDAERSDPLAGLTQQERVLLDLLGEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASTLDRRNQPQS
>NZ_AP022579.1|WP_077742935.1|2824015_2824450_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MGIELSTRSEPVEILSERESWELLGGVSLGRLVTAVDDEAHIFPVNFVVQNRTILFRTAAGTKLISAAINNQVLFEADDHTAAEGWSVIVRGIARTLRSDEELEEAEQAQLLPWTATSKTHYIRVSPVRVTGRRFRFGPEPDAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3539268-3539298	5	0.839
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	162529-162559	6	0.806
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP011053	Halomonas sp. KO116 plasmid unnamed1, complete sequence	268578-268608	6	0.806
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	1393-1423	7	0.774
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	382185-382215	7	0.774
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	AP019515	Halomonas sulfidaeris ATCC BAA-803 plasmid pBAA-803-A DNA, complete genome	218114-218144	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	2122344-2122374	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	1051199-1051229	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP011523	Streptomyces sp. CFMR 7 strain CFMR-7 plasmid unnamed, complete sequence	30822-30852	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	10785-10815	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	645565-645595	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	82626-82656	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_LR134459	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence	110830-110860	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP024587	Roseomonas sp. FDAARGOS_362 plasmid unnamed3, complete sequence	107979-108009	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP039426	Citricoccus sp. SGAir0253 plasmid unnamed2, complete sequence	72803-72833	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	725359-725389	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	26437-26467	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	300592-300622	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP039431	Citricoccus sp. SGAir0453 plasmid unnamed2, complete sequence	72804-72834	8	0.742
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP047222	Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed4, complete sequence	10114-10144	8	0.742
NZ_AP022579_2	2.1\|1331181\|37\|NZ_AP022579\|CRISPRCasFinder	1331181-1331217	37	CP054935	Nocardiopsis flavescens strain NA01583 plasmid unnamed2, complete sequence	16039-16075	9	0.757
NZ_AP022579_2	2.1\|1331181\|37\|NZ_AP022579\|CRISPRCasFinder	1331181-1331217	37	CP054935	Nocardiopsis flavescens strain NA01583 plasmid unnamed2, complete sequence	34395-34431	9	0.757
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3495243-3495273	10	0.677
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1022063-1022093	10	0.677
NZ_AP022579_2	2.5\|1331457\|31\|NZ_AP022579\|CRISPRCasFinder	1331457-1331487	31	NZ_CP025552	Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence	256643-256673	10	0.677

1. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.839

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
gccgggggctggccgtagccgccgcccgcgg	Protospacer
* ** ***********************

2. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
gtggcgggcaggccgtagccgccggccgcca	Protospacer
*  ****** ************** *** *

3. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP011053 (Halomonas sp. KO116 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

-ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
aggcg-gggctggccgctgccgccgcccgtgg	Protospacer
 **** **********. ***********

4. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

ggcgcgggctggccgtagccgccgc--ccggct	CRISPR spacer
cgcgcgcgctggccgtcgccgccgcgttcga--	Protospacer
 ***** ********* ********  .**.

5. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 7, identity: 0.774

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
gcggcgggctggccgtagccatcgccatgat	Protospacer
*  *****************..****  * *

6. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to AP019515 (Halomonas sulfidaeris ATCC BAA-803 plasmid pBAA-803-A DNA, complete genome) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
aaggcgggctggccgctgccgccgcccgtgg	Protospacer
.. ************. ***********

7. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
agcgtgggctggcggtagccgccgtcttcca	Protospacer
.***.******** **********.*.  *

8. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
agcgtgggctggcggtagccgccgtcttcca	Protospacer
.***.******** **********.*.  *

9. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP011523 (Streptomyces sp. CFMR 7 strain CFMR-7 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
acaccggcctggccgtacccgccgcccgtat	Protospacer
.   *** ********* **********  *

10. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
tcgccgcgctggccggagccgccgcccgccc	Protospacer
    ** ******** ************ *.

11. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
tcgccgcgctggccggagccgccgcccgccc	Protospacer
    ** ******** ************ *.

12. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
tcgccgcgctggccggagccgccgcccgccc	Protospacer
    ** ******** ************ *.

13. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_LR134459 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
tggtcggggtggccgtagccgccgacctcgt	Protospacer
 *  **** *************** **   *

14. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP024587 (Roseomonas sp. FDAARGOS_362 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
acgccgccctggccgaagccgtcgcccggct	Protospacer
.   **  ******* *****.*********

15. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP039426 (Citricoccus sp. SGAir0253 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
ccgacgacctggccgaagccgtcgcccggct	Protospacer
   .**. ******* *****.*********

16. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
gtggcgggcgcgccgtagccgccgccgcccg	Protospacer
*  ******  ***************   *

17. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
caggcgggatcgccgtagccgccgccgcgca	Protospacer
 . ***** * ***************  **

18. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
attgcgggcaggccgcagccgccgccggctt	Protospacer
. .****** *****.********** * .*

19. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP039431 (Citricoccus sp. SGAir0453 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
ccgacgacctggccgaagccgtcgcccggct	Protospacer
   .**. ******* *****.*********

20. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP047222 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgggctggccgtagccgcc--gcccggct	CRISPR spacer
cgcgcgcgctggccgtcgccgccgtgttcag--	Protospacer
 ***** ********* ******  *..*.*

21. spacer 2.1|1331181|37|NZ_AP022579|CRISPRCasFinder matches to CP054935 (Nocardiopsis flavescens strain NA01583 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.757

ccgtaccccggctgacccccctgcggtgcgccgtagt	CRISPR spacer
cctgggcccggctgaccaccttgcggtgcgccgtcac	Protospacer
**  . *********** **.************* ..

22. spacer 2.1|1331181|37|NZ_AP022579|CRISPRCasFinder matches to CP054935 (Nocardiopsis flavescens strain NA01583 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.757

ccgtaccccggctgacccccctgcggtgcgccgtagt	CRISPR spacer
cctgggcccggctgaccaccttgcggtgcgccgtcac	Protospacer
**  . *********** **.************* ..

23. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.677

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
caggcgggctggccgcagcagccgccgcctc	Protospacer
 . ************.*** ******   ..

24. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 10, identity: 0.677

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
tcggcgggttggccgtggccgccgccttctc	Protospacer
   *****.*******.*********.  ..

25. spacer 2.5|1331457|31|NZ_AP022579|CRISPRCasFinder matches to NZ_CP025552 (Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

ggcgcgggctggccgtagccgccgcccggct	CRISPR spacer
ccggcgggcaggccgtggccgccgccgacga	Protospacer
   ****** ******.********* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5457415 : 5465158

Lactococcus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077743819.1\|5457415_5459584_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	5.0e-204	50.8
WP_065462752.1\|5459550_5460003_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_075919479.1\|5460037_5460277_-	redoxin NrdH	V5UN81	Mycobacterium_phage	2.0e-21	64.9
WP_077743818.1\|5460779_5461322_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	5.7e-08	37.8
WP_077743817.1\|5461422_5462028_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_077743816.1\|5462032_5463097_+	DNA polymerase IV	A0A218MNF2	uncultured_virus	1.5e-15	32.7
WP_077743815.1\|5463107_5464280_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	2.3e-62	39.5
WP_077743814.1\|5464276_5465158_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	3.5e-07	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022579

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection