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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP022604 Mycolicibacterium chitae strain JCM 12403 4 crisprs c2c9_V-U4,csa3,DEDDh,cas3,DinG,cas4,PD-DExK,WYL 0 2 0 0

Results visualization

1. NZ_AP022604
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP022604_1 547423-547523 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP022604_2 1595275-1595415 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP022604_3 2747993-2748075 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP022604_4 5212627-5212697 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 NC_008712 Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence 118685-118709 3 0.88
NZ_AP022604_2 2.2|1595386|26|NZ_AP022604|PILER-CR 1595386-1595411 26 NC_011044 Mycobacterium phage Nigel, complete genome 4612-4637 4 0.846
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 NZ_CP035419 Leisingera sp. NJS204 plasmid unnamed2, complete sequence 130517-130541 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 NZ_CP038239 Leisingera sp. NJS201 plasmid unnamed5, complete sequence 74336-74360 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 NZ_CP022416 Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence 274466-274490 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 1718169-1718193 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 NC_006569 Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence 155668-155692 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 NZ_CP044217 Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence 174344-174368 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 NZ_CP042268 Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence 60388-60412 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 MH576962 Streptomyces phage Satis, complete genome 13591-13615 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 MK620894 Streptomyces phage Kradal, complete genome 13595-13619 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 MT110073 Stenotrophomonas phage vB_SmaS_DLP_3, complete genome 26738-26762 4 0.84
NZ_AP022604_4 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder 5212650-5212674 25 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1825886-1825910 5 0.8

1. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 3, identity: 0.88

tcatctcggcggtggccatccccgg	CRISPR spacer
caatctcggcggtggccatcccggg	Protospacer
. ******************** **

2. spacer 2.2|1595386|26|NZ_AP022604|PILER-CR matches to NC_011044 (Mycobacterium phage Nigel, complete genome) position: , mismatch: 4, identity: 0.846

accctggcgcggtgggtagttcgggt	CRISPR spacer
atcctggcgcggtgggttgctcgggg	Protospacer
*.*************** *.***** 

3. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to NZ_CP035419 (Leisingera sp. NJS204 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
ccatctcggcggtggcaatgcccga	Protospacer
.*************** ** ****.

4. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to NZ_CP038239 (Leisingera sp. NJS201 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
ccatctcggcggtggcaatgcccga	Protospacer
.*************** ** ****.

5. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to NZ_CP022416 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
acatctcggccgtggcgatccccga	Protospacer
 ********* ***** *******.

6. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
ggatctcgccggtggccatccgcgg	Protospacer
  ****** ************ ***

7. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
acatctcggcggtggcgatgcccga	Protospacer
 *************** ** ****.

8. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to NZ_CP044217 (Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
atatctcggcggtggcgatcccccg	Protospacer
 .************** ****** *

9. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
tcatctcggcggtggccttcgccac	Protospacer
***************** ** **. 

10. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
gcatctcgtcggtgaccatccccgt	Protospacer
 ******* *****.********* 

11. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
gcatctcgtcggtgaccatccccgt	Protospacer
 ******* *****.********* 

12. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
tcatcttggcggtggccatccgtcg	Protospacer
******.************** . *

13. spacer 4.1|5212650|25|NZ_AP022604|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 5, identity: 0.8

tcatctcggcggtggccatccccgg	CRISPR spacer
cgtgctcggcggtggcgatccccgg	Protospacer
.   ************ ********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage